BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10738
(609 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 558 bits (1439), Expect = e-159, Method: Compositional matrix adjust.
Identities = 267/403 (66%), Positives = 335/403 (83%), Gaps = 9/403 (2%)
Query: 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQ 81
CLELALEGERLCK+GDCRAGV+FF+AA+Q GT+DL+TLSAIYSQLGNAYFYL DY KA++
Sbjct: 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 68
Query: 82 YHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141
YH DLTLAR + D+LGEAK+SGNLGNTLKV+G +DEA+VCC+RHL+ISR+LNDK+ E R
Sbjct: 69 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
ALYNLGNVYHAKGK+ G G QD GE+PEEV+ LQ A+ +YE+NL+L+ + D AAQGR
Sbjct: 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGR 188
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A GNLGNT+YLLGNF+ A+ H++RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE
Sbjct: 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321
+YK+TL+LA+ L DRAVEAQ+CYSLGNTYTLL+DY AIDYHL+HL IAQ+L DR+GEGR
Sbjct: 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 308
Query: 322 ACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGM--STND 379
ACWSLGNA+ A GNH++A++FA KHLEIS+++GD G++TA++N++DL+ LG+ STN+
Sbjct: 309 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNN 368
Query: 380 LSPDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLDLIKLTP 422
I+S N +P G RR SME ++L+KLTP
Sbjct: 369 SIMSENTEIDSSLNGVRPKLG-------RRHSMENMELMKLTP 404
>pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex
pdb|4A1S|B Chain B, Crystallographic Structure Of The Pins:insc Complex
Length = 411
Score = 524 bits (1350), Expect = e-149, Method: Compositional matrix adjust.
Identities = 244/330 (73%), Positives = 294/330 (89%), Gaps = 3/330 (0%)
Query: 21 MCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAM 80
MCLELALEGERLC AGDCRAGVAFFQAAIQAGT+DLRTLSAIYSQLGNAYFYLGDY KAM
Sbjct: 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAM 106
Query: 81 QYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEG 140
QYHK DLTLA++M D+LGEAKSSGNLGNTLKVMG++DEA +CC+RHL ++RQL D+LSEG
Sbjct: 107 QYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166
Query: 141 RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQG 200
RALYNLGNVYHAKGK +GQ++PG++ ++VK L A+++Y++NL LM+++ D AQG
Sbjct: 167 RALYNLGNVYHAKGK---HLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQG 223
Query: 201 RACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAAS 260
RACGNLGNTYYLLG+F+ AI +HQERL+IAREFGD+AAERRANSNLGNSHIFLG+++ A+
Sbjct: 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA 283
Query: 261 EHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 320
EHYKRTL LA +LG+R VEAQ+CYSLGNTYTLL ++ TAI+YH RHL IAQ+L DR+GE
Sbjct: 284 EHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA 343
Query: 321 RACWSLGNAHAARGNHEKALYFATKHLEIS 350
RACWSLGNAH+A G HE+AL +A +HL+++
Sbjct: 344 RACWSLGNAHSAIGGHERALKYAEQHLQLA 373
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 282 ACYS-LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKAL 340
A YS LGN Y L DY A+ YH L +A+ + DR+GE ++ +LGN G ++A
Sbjct: 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAA 146
Query: 341 YFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLSP 382
+HL +++QLGD L + A N+ ++ A G +P
Sbjct: 147 ICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNP 188
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 516 bits (1329), Expect = e-146, Method: Compositional matrix adjust.
Identities = 240/334 (71%), Positives = 294/334 (88%)
Query: 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQ 81
CLELALEGERLCK+GDCRAGV+FF+AA+Q GT+DL+TLSAIYSQLGNAYFYL DY KA++
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 64
Query: 82 YHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141
YH DLTLAR + D+LGEAK+SGNLGNTLKV+G +DEA+VCC+RHL+ISR+LNDK+ E R
Sbjct: 65 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
ALYNLGNVYHAKGK+ G G QD GE+PE+V+ LQ A+ YE+NL+L+ + D AAQGR
Sbjct: 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGR 184
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A GNLGNT+YLLGNF+ A+ H++RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE
Sbjct: 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321
+YK+TL+LA+ L DRAVEAQ+CYSLGNTYTLL+DY AIDYHL+HL IAQ+L DR+GEGR
Sbjct: 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304
Query: 322 ACWSLGNAHAARGNHEKALYFATKHLEISKQLGD 355
ACWSLGNA+ A GNH++A++FA KHLEIS+++GD
Sbjct: 305 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 338
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 282 ACYS-LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKAL 340
A YS LGN Y L DY A++YH L +A+ + D++GE +A +LGN GN ++A+
Sbjct: 44 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAI 103
Query: 341 YFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMS 376
+HL+IS++L D +G+ A N+ ++ A G S
Sbjct: 104 VCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS 139
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 516 bits (1328), Expect = e-146, Method: Compositional matrix adjust.
Identities = 240/334 (71%), Positives = 294/334 (88%)
Query: 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQ 81
CLELALEGERLCK+GDCRAGV+FF+AA+Q GT+DL+TLSAIYSQLGNAYFYL DY KA++
Sbjct: 7 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 66
Query: 82 YHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141
YH DLTLAR + D+LGEAK+SGNLGNTLKV+G +DEA+VCC+RHL+ISR+LNDK+ E R
Sbjct: 67 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 126
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
ALYNLGNVYHAKGK+ G G QD GE+PE+V+ LQ A+ YE+NL+L+ + D AAQGR
Sbjct: 127 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGR 186
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A GNLGNT+YLLGNF+ A+ H++RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE
Sbjct: 187 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 246
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321
+YK+TL+LA+ L DRAVEAQ+CYSLGNTYTLL+DY AIDYHL+HL IAQ+L DR+GEGR
Sbjct: 247 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 306
Query: 322 ACWSLGNAHAARGNHEKALYFATKHLEISKQLGD 355
ACWSLGNA+ A GNH++A++FA KHLEIS+++GD
Sbjct: 307 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 340
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 282 ACYS-LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKAL 340
A YS LGN Y L DY A++YH L +A+ + D++GE +A +LGN GN ++A+
Sbjct: 46 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAI 105
Query: 341 YFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLSP 382
+HL+IS++L D +G+ A N+ ++ A G S P
Sbjct: 106 VCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGP 147
>pdb|3RO3|A Chain A, Crystal Structure Of LgnMINSCUTEABLE COMPLEX
Length = 164
Score = 247 bits (631), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 115/159 (72%), Positives = 142/159 (89%)
Query: 197 AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEY 256
AAQGRA GNLGNT+YLLGNF+ A+ H++RL IA+EFGDKAAER A SNLGN++IFLGE+
Sbjct: 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEF 65
Query: 257 QAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR 316
+ ASE+YK+TL+LA+ L DRAVEAQ+CYSLGNTYTLL+DY AIDYHL+HL IAQ+L DR
Sbjct: 66 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 125
Query: 317 VGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGD 355
+GEGRACWSLGNA+ A GNH++A++FA KHLEIS+++GD
Sbjct: 126 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 164
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 98/173 (56%), Gaps = 20/173 (11%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ LGN ++ LG+++ A+ H+Q L +A+ DK E + NLGN +G+++ A
Sbjct: 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEY 71
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
K+ L ++RQL D+ E ++ Y+LGN Y QD ++AI Y
Sbjct: 72 YKKTLLLARQLKDRAVEAQSCYSLGNTY---------TLLQD-----------YEKAIDY 111
Query: 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD 235
+ ++LA+ +E+ D +GRAC +LGN Y LGN QA+++ ++ L+I+RE GD
Sbjct: 112 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 164
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 101/177 (57%), Gaps = 20/177 (11%)
Query: 99 EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIG 158
+ ++ GNLGNT ++G + +A++ ++ L I+++ DK +E A NLGN Y G+
Sbjct: 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE--- 64
Query: 159 KVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQ 218
+ A +YY++ L L +++ D A + ++C +LGNTY LL ++++
Sbjct: 65 -----------------FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK 107
Query: 219 AIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD 275
AI YH + L IA+E D+ E RA +LGN++ LG + A ++ L +++++GD
Sbjct: 108 AIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 164
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 87/150 (58%), Gaps = 18/150 (12%)
Query: 200 GRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAA 259
A NLGN YY G++ +AI Y+Q+ L E ++AE A NLGN++ G+Y A
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKAL----ELDPRSAE--AWYNLGNAYYKQGDYDEA 54
Query: 260 SEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 319
E+Y++ L +L R+ A+A Y+LGN Y DY AI+Y+ + L +L R E
Sbjct: 55 IEYYQKAL----ELDPRS--AEAWYNLGNAYYKQGDYDEAIEYYQKAL----ELDPRSAE 104
Query: 320 GRACWSLGNAHAARGNHEKALYFATKHLEI 349
A ++LGNA+ +G++++A+ + K LE+
Sbjct: 105 --AWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 38/164 (23%)
Query: 66 LGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKR 125
LGNAY+ GDY +A++Y+++ L L A++ NLGN G YDEA+ ++
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 126 HLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185
LE+ + A YNLGN Y+ +G EAI+YY++
Sbjct: 61 ALELDPR------SAEAWYNLGNAYYKQGD--------------------YDEAIEYYQK 94
Query: 186 NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKI 229
L E++ +A+ A NLGN YY G++ +AI Y+Q+ L++
Sbjct: 95 AL----ELDPRSAE--AWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 85/170 (50%), Gaps = 38/170 (22%)
Query: 100 AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGK 159
A++ NLGN G YDEA+ ++ LE+ + A YNLGN Y+ +G
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGD---- 50
Query: 160 VGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQA 219
EAI+YY++ L E++ +A+ A NLGN YY G++ +A
Sbjct: 51 ----------------YDEAIEYYQKAL----ELDPRSAE--AWYNLGNAYYKQGDYDEA 88
Query: 220 IYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 269
I Y+Q+ L E ++AE A NLGN++ G+Y A E+Y++ L L
Sbjct: 89 IEYYQKAL----ELDPRSAE--AWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 87/168 (51%), Gaps = 38/168 (22%)
Query: 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQ 199
A YNLGN Y+ +G EAI+YY++ L E++ +A+
Sbjct: 1 AEAWYNLGNAYYKQGD--------------------YDEAIEYYQKAL----ELDPRSAE 36
Query: 200 GRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAA 259
A NLGN YY G++ +AI Y+Q+ L E ++AE A NLGN++ G+Y A
Sbjct: 37 --AWYNLGNAYYKQGDYDEAIEYYQKAL----ELDPRSAE--AWYNLGNAYYKQGDYDEA 88
Query: 260 SEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 307
E+Y++ L +L R+ A+A Y+LGN Y DY AI+Y+ + L
Sbjct: 89 IEYYQKAL----ELDPRS--AEAWYNLGNAYYKQGDYDEAIEYYQKAL 130
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 18/140 (12%)
Query: 195 DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG 254
D A NLGN YY G++ +AI Y+Q+ L++ + + A A NLGN++ G
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---YPNNA---EAWYNLGNAYYKQG 57
Query: 255 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM 314
+Y A E+Y++ L L + A+A Y+LGN Y DY AI+Y+ + L +L
Sbjct: 58 DYDEAIEYYQKALELYPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKAL----ELY 107
Query: 315 DRVGEGRACWSLGNAHAARG 334
E + +LGNA +G
Sbjct: 108 PNNAEAKQ--NLGNAKQKQG 125
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 12/103 (11%)
Query: 52 GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLK 111
G D + + LGNAY+ GDY +A++Y+++ L L N A++ NLGN
Sbjct: 1 GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN------NAEAWYNLGNAYY 54
Query: 112 VMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKG 154
G YDEA+ ++ LE+ + A YNLGN Y+ +G
Sbjct: 55 KQGDYDEAIEYYQKALELYP------NNAEAWYNLGNAYYKQG 91
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 12/115 (10%)
Query: 235 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR 294
D A NLGN++ G+Y A E+Y++ L L + A+A Y+LGN Y
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN------NAEAWYNLGNAYYKQG 57
Query: 295 DYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
DY AI+Y+ + L + A ++LGNA+ +G++++A+ + K LE+
Sbjct: 58 DYDEAIEYYQKALEL------YPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 18/140 (12%)
Query: 195 DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG 254
D A NLGN YY G++ +AI Y+Q+ L++ A NLGN++ G
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAWYNLGNAYYKQG 57
Query: 255 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM 314
+Y A E+Y++ L L + A+A Y+LGN Y DY AI+Y+ + L +L
Sbjct: 58 DYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKAL----ELD 107
Query: 315 DRVGEGRACWSLGNAHAARG 334
E + +LGNA +G
Sbjct: 108 PNNAEAKQ--NLGNAKQKQG 125
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 12/103 (11%)
Query: 52 GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLK 111
G D + + LGNAY+ GDY +A++Y+++ L L N A++ NLGN
Sbjct: 1 GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYY 54
Query: 112 VMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKG 154
G YDEA+ ++ LE+ + A YNLGN Y+ +G
Sbjct: 55 KQGDYDEAIEYYQKALELDP------NNAEAWYNLGNAYYKQG 91
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 275 DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARG 334
D A+A Y+LGN Y DY AI+Y+ + L + A ++LGNA+ +G
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAWYNLGNAYYKQG 57
Query: 335 NHEKALYFATKHLEI 349
++++A+ + K LE+
Sbjct: 58 DYDEAIEYYQKALEL 72
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 18/140 (12%)
Query: 195 DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG 254
D A NLGN YY G++++AI Y+Q+ L++ A NLGN++ G
Sbjct: 4 DPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALEL------DPNNASAWYNLGNAYYKQG 57
Query: 255 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM 314
+YQ A E+Y++ L L + A+A Y GN Y DY AI+ + + L +
Sbjct: 58 DYQKAIEYYQKALELDPN------NAKAWYRRGNAYYKQGDYQKAIEDYQKALEL----- 106
Query: 315 DRVGEGRACWSLGNAHAARG 334
+A +LGNA +G
Sbjct: 107 -DPNNAKAKQNLGNAKQKQG 125
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 12/103 (11%)
Query: 52 GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLK 111
G D + + LGNAY+ GDYQKA++Y+++ L L N A + NLGN
Sbjct: 1 GAMDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPN------NASAWYNLGNAYY 54
Query: 112 VMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKG 154
G Y +A+ ++ LE+ + +A Y GN Y+ +G
Sbjct: 55 KQGDYQKAIEYYQKALELDP------NNAKAWYRRGNAYYKQG 91
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 24/118 (20%)
Query: 275 DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARG 334
D A+A +LGN Y DY AI+Y+ + L + A ++LGNA+ +G
Sbjct: 4 DPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALEL------DPNNASAWYNLGNAYYKQG 57
Query: 335 NHEKALYFATKHLEISKQLGDP-------------LGQVTAQMNVTDLRKALGMSTND 379
+++KA+ + K LE+ DP Q Q + D +KAL + N+
Sbjct: 58 DYQKAIEYYQKALEL-----DPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
G K GD + + ++Q A++ D A Y + GNAY+ GDYQKA++ +++ L
Sbjct: 50 GNAYYKQGDYQKAIEYYQKALEL---DPNNAKAWYRR-GNAYYKQGDYQKAIEDYQKALE 105
Query: 89 LARNMEDKLGEAKSSGNLGNTLKVMG 114
L N AK+ NLGN + G
Sbjct: 106 LDPN------NAKAKQNLGNAKQKQG 125
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 12/103 (11%)
Query: 52 GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLK 111
G D + + LGNAY+ GDY +A++Y+++ L L N A++ NLGN
Sbjct: 1 GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYY 54
Query: 112 VMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKG 154
G YDEA+ ++ LE+ + A NLGN +G
Sbjct: 55 KQGDYDEAIEYYQKALELDP------NNAEAKQNLGNAKQKQG 91
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 275 DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARG 334
D A+A Y+LGN Y DY AI+Y+ + L + A ++LGNA+ +G
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAWYNLGNAYYKQG 57
Query: 335 NHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALG 374
++++A+ + K LE+ DP A+ N+ + ++ G
Sbjct: 58 DYDEAIEYYQKALEL-----DP-NNAEAKQNLGNAKQKQG 91
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 195 DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG 254
D A NLGN YY G++ +AI Y+Q+ L++ A NLGN++ G
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAWYNLGNAYYKQG 57
Query: 255 EYQAASEHYKRTLVL 269
+Y A E+Y++ L L
Sbjct: 58 DYDEAIEYYQKALEL 72
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 201 RACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAAS 260
A NLGN YY G++ +AI Y+Q+ L E ++AE A NLGN++ G+Y A
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKAL----ELDPRSAE--AWYNLGNAYYKQGDYDEAI 57
Query: 261 EHYKRTLVL 269
E+Y++ L L
Sbjct: 58 EYYQKALEL 66
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
Query: 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKA 339
A+A Y+LGN Y DY AI+Y+ + L +L R E A ++LGNA+ +G++++A
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKAL----ELDPRSAE--AWYNLGNAYYKQGDYDEA 56
Query: 340 LYFATKHLEI 349
+ + K LE+
Sbjct: 57 IEYYQKALEL 66
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ LGNAY+ GDY +A++Y+++ L L A++ NLGN G YDEA+
Sbjct: 6 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEY 59
Query: 123 CKRHLEI 129
++ LE+
Sbjct: 60 YQKALEL 66
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 98 GEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKG 154
G A++ NLGN G YDEA+ ++ LE+ + A YNLGN Y+ +G
Sbjct: 1 GSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQG 51
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 96/253 (37%), Gaps = 48/253 (18%)
Query: 59 LSAIYSQLGNAYFYLGDYQKAMQYHKQDLTL-----------------ARNMEDKLGEAK 101
L+ YS LGN Y G Q+A+++++ L L A +ME +
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 102 SS-----------GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVY 150
S+ +LGN LK +G+ +EA C + +E A NLG V+
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF------AVAWSNLGCVF 179
Query: 151 HAKGKA------IGKVGQQDPGEYPEEVKV--CLQEAIKYYEQNLALMKEINDTAAQGRA 202
+A+G+ K DP + + L+EA + A ++ ++ +
Sbjct: 180 NAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239
Query: 203 CGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEH 262
GNL YY G AI ++ +++ F D A NL N+ G A +
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD------AYCNLANALKEKGSVAEAEDC 293
Query: 263 YKRTLVLAQDLGD 275
Y L L D
Sbjct: 294 YNTALRLCPTHAD 306
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 90/229 (39%), Gaps = 47/229 (20%)
Query: 195 DTAAQGRACGNLG-----NTYYLLGNFKQAIYYHQERLKIAREFGDKAAER-----RANS 244
D A R C L NT LL +I++ RL + F A ++ A S
Sbjct: 14 DFEAAERHCMQLWRQEPDNTGVLL--LLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS 71
Query: 245 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVE-AQACYSLGNTYTLLRDYPTAIDYH 303
NLGN + G+ Q A EHY+ L L D D + A A + G+ ++ Y +A+ Y+
Sbjct: 72 NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131
Query: 304 LRHLIIAQQL------MDRVGEGRAC--------------WS-LGNAHAARGNHEKALYF 342
+ L + R+ E +AC WS LG A+G ++
Sbjct: 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE----IWL 187
Query: 343 ATKHLEISKQLGDP--------LGQVTAQMNVTDLRKALGMSTNDLSPD 383
A H E + L DP LG V + + D A + LSP+
Sbjct: 188 AIHHFEKAVTL-DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 103/253 (40%), Gaps = 46/253 (18%)
Query: 58 TLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYD 117
+ +S LG + G+ A+ + ++ +TL N D + NLGN LK +D
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD------AYINLGNVLKEARIFD 220
Query: 118 EAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKG----------KAIGKVGQQDPGE 167
A+ R L +S N + G NL VY+ +G +AI ++ P
Sbjct: 221 RAVAAYLRALSLSP--NHAVVHG----NLACVYYEQGLIDLAIDTYRRAI-ELQPHFPDA 273
Query: 168 YPE-----EVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYY 222
Y + K + EA Y L L D+ NL N GN ++A+
Sbjct: 274 YCNLANALKEKGSVAEAEDCYNTALRLCPTHADS------LNNLANIKREQGNIEEAVRL 327
Query: 223 HQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQA 282
+++ L++ EF A+SNL + G+ Q A HYK + ++ D A
Sbjct: 328 YRKALEVFPEFA------AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD------A 375
Query: 283 CYSLGNTYTLLRD 295
++GNT ++D
Sbjct: 376 YSNMGNTLKEMQD 388
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 84/216 (38%), Gaps = 47/216 (21%)
Query: 100 AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGK 159
A S NL N + G +EA+ ++ LE+ + A NL +V +GK
Sbjct: 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQGK---- 58
Query: 160 VGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQA 219
LQEA+ +Y++ + + D A N+GNT + + + A
Sbjct: 59 ----------------LQEALMHYKEAIRISPTFAD------AYSNMGNTLKEMQDVQGA 96
Query: 220 IYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVE 279
+ + ++I F D A+SNL + H G A Y+ L L D D
Sbjct: 97 LQCYTRAIQINPAFAD------AHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCN 150
Query: 280 AQACYSLGNTYTLLRDYPTAIDYHLRHL--IIAQQL 313
C + +T DY D ++ L I+A QL
Sbjct: 151 LAHCLQIVCDWT---DY----DERMKKLVSIVADQL 179
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 11/118 (9%)
Query: 36 GDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMED 95
G+ V ++ A++ + +A +S L + G Q+A+ ++K+ + ++ D
Sbjct: 23 GNIEEAVRLYRKALEVFPE----FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 78
Query: 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALY-NLGNVYHA 152
+ N+GNTLK M A+ C R ++I+ D S +++ + GN+ A
Sbjct: 79 ------AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 130
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 57/135 (42%), Gaps = 26/135 (19%)
Query: 108 NTLKVM----GKYDEAMVCCKRHLEISRQL--NDKLSEGRALYNLGNVYHAKGKAIGKVG 161
N L V+ GKY EA CKR LEI ++ D + L NL + +GK
Sbjct: 115 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKY----- 169
Query: 162 QQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIY 221
EEV+ Q A++ Y+ L D + NL + Y G FKQA
Sbjct: 170 --------EEVEYYYQRALEIYQTKLG-----PDDPNVAKTKNNLASCYLKQGKFKQAET 216
Query: 222 YHQERLKIA--REFG 234
++E L A REFG
Sbjct: 217 LYKEILTRAHEREFG 231
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 36 GDCRAGVAFFQAAIQAGTD---DLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLAR 91
G+ ++ A++ G + D + +S ++++GNAY LGD +K ++Y+++ LT R
Sbjct: 52 GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR 110
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 11/46 (23%)
Query: 193 INDTAAQGR-----------ACGNLGNTYYLLGNFKQAIYYHQERL 227
+ND QGR + +GN Y+ LG+ K+ I Y+Q+ L
Sbjct: 61 LNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL 106
>pdb|1FW3|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli
pdb|1FW3|B Chain B, Outer Membrane Phospholipase A From Escherichia Coli
Length = 275
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 15/170 (8%)
Query: 216 FKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR--TLVLAQDL 273
F++ Y Q L A ++ R + +G +H G S + R T ++A++
Sbjct: 115 FRETNYEPQLFLGFATDYRFAGWTLR-DVEMGYNHDXNGRSDPTSRSWNRLYTRLMAEN- 172
Query: 274 GDRAVEAQACYSLGNTYTLLRDYPTAIDYH-LRHLIIAQQLMDRV--GEGRACWSLGNAH 330
G+ VE + Y +GNT D P Y L I L D V +G+ W+ G
Sbjct: 173 GNWLVEVKPWYVVGNT----DDNPDITKYMGYYQLKIGYHLGDAVLSAKGQYNWNTGYGG 228
Query: 331 AARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDL 380
A G Y TKH+ + Q+ G+ N R +G+ NDL
Sbjct: 229 AELG----LSYPITKHVRLYTQVYSGYGESLIDYNFNQTRVGVGVMLNDL 274
>pdb|1QD5|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli
pdb|1FW2|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli
Length = 275
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 15/170 (8%)
Query: 216 FKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR--TLVLAQDL 273
F++ Y Q L A ++ R + +G +H G S + R T ++A++
Sbjct: 115 FRETNYEPQLFLGFATDYRFAGWTLR-DVEMGYNHDSNGRSDPTSRSWNRLYTRLMAEN- 172
Query: 274 GDRAVEAQACYSLGNTYTLLRDYPTAIDYH-LRHLIIAQQLMDRV--GEGRACWSLGNAH 330
G+ VE + Y +GNT D P Y L I L D V +G+ W+ G
Sbjct: 173 GNWLVEVKPWYVVGNT----DDNPDITKYMGYYQLKIGYHLGDAVLSAKGQYNWNTGYGG 228
Query: 331 AARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDL 380
A G Y TKH+ + Q+ G+ N R +G+ NDL
Sbjct: 229 AELG----LSYPITKHVRLYTQVYSGYGESLIDYNFNQTRVGVGVMLNDL 274
>pdb|1QD6|C Chain C, Outer Membrane Phospholipase A From Escherichia Coli
pdb|1QD6|D Chain D, Outer Membrane Phospholipase A From Escherichia Coli
Length = 240
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 15/170 (8%)
Query: 216 FKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR--TLVLAQDL 273
F++ Y Q L A ++ R + +G +H G S + R T ++A++
Sbjct: 80 FRETNYEPQLFLGFATDYRFAGWTLR-DVEMGYNHDSNGRSDPTSRSWNRLYTRLMAEN- 137
Query: 274 GDRAVEAQACYSLGNTYTLLRDYPTAIDYH-LRHLIIAQQLMDRV--GEGRACWSLGNAH 330
G+ VE + Y +GNT D P Y L I L D V +G+ W+ G
Sbjct: 138 GNWLVEVKPWYVVGNT----DDNPDITKYMGYYQLKIGYHLGDAVLSAKGQYNWNTGYGG 193
Query: 331 AARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDL 380
A G Y TKH+ + Q+ G+ N R +G+ NDL
Sbjct: 194 AELG----LSYPITKHVRLYTQVYSGYGESLIDYNFNQTRVGVGVMLNDL 239
>pdb|1ILD|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli N156a
Active Site Mutant Ph 4.6
pdb|1ILZ|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli N156a
Active Site Mutant Ph 6.1
pdb|1IM0|A Chain A, Outer Membrane Phospholipase A From Escherichia Coli N156a
Active Site Mutant Ph 8.3
Length = 275
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 15/170 (8%)
Query: 216 FKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR--TLVLAQDL 273
F++ Y Q L A ++ R + +G +H G S + R T ++A++
Sbjct: 115 FRETNYEPQLFLGFATDYRFAGWTLR-DVEMGYNHDSNGRSDPTSRSWARLYTRLMAEN- 172
Query: 274 GDRAVEAQACYSLGNTYTLLRDYPTAIDYH-LRHLIIAQQLMDRV--GEGRACWSLGNAH 330
G+ VE + Y +GNT D P Y L I L D V +G+ W+ G
Sbjct: 173 GNWLVEVKPWYVVGNT----DDNPDITKYMGYYQLKIGYHLGDAVLSAKGQYNWNTGYGG 228
Query: 331 AARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDL 380
A G Y TKH+ + Q+ G+ N R +G+ NDL
Sbjct: 229 AELG----LSYPITKHVRLYTQVYSGYGESLIDYNFNQTRVGVGVMLNDL 274
>pdb|4G5S|E Chain E, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|G Chain G, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|Z Chain Z, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|F Chain F, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 25
Score = 35.4 bits (80), Expect = 0.082, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 536 DDGFLDMLIRCQGARLEDQRSHLP 559
D+ F D+L++CQG+RL+DQR P
Sbjct: 1 DEDFFDILVKCQGSRLDDQRCAPP 24
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 567 DEDFFSLITRLQSGRMEDQRATVPS 591
DEDFF ++ + Q R++DQR PS
Sbjct: 1 DEDFFDILVKCQGSRLDDQRCAPPS 25
>pdb|3TVT|B Chain B, Structural Basis For Discs Large Interaction With Pins
Length = 50
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 403 RYNRVRRSSMEQLDLIKLTP 422
R RVRR MEQLDLIK+TP
Sbjct: 18 RMVRVRRQDMEQLDLIKITP 37
>pdb|2JJD|A Chain A, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|B Chain B, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|C Chain C, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|D Chain D, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|E Chain E, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|F Chain F, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
Length = 599
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 256 YQAASEHYKRTLVLAQDLGDRAVEA-------QACYSLGNTYTLLRDYPTAIDYHLRHLI 308
++ E T+V+ +L +R E Q C++ GN + D +DY +R
Sbjct: 114 WRMVWEQKSATIVMLTNLKERKEEKCHQYWPDQGCWTYGNIRVCVEDCVVLVDYTIRKFC 173
Query: 309 IAQQLMD 315
I QL D
Sbjct: 174 IQPQLPD 180
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 26/135 (19%)
Query: 108 NTLKVM----GKYDEAMVCCKRHLEISRQLNDKLSE--GRALYNLGNVYHAKGKAIGKVG 161
N L V+ GKY EA CKR LEI ++ K + L NL + +GKA
Sbjct: 89 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKA----- 143
Query: 162 QQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIY 221
EEV+ + A++ Y L D + NL + Y G ++ A
Sbjct: 144 --------EEVEYYYRRALEIYATRLG-----PDDPNVAKTKNNLASCYLKQGKYQDAET 190
Query: 222 YHQERLKIA--REFG 234
++E L A +EFG
Sbjct: 191 LYKEILTRAHEKEFG 205
>pdb|4G5O|E Chain E, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|F Chain F, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|G Chain G, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|H Chain H, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 26
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 567 DEDFFSLITRLQSGRMEDQRATV 589
DEDFFSLI R Q+ RM++QR +
Sbjct: 1 DEDFFSLILRSQAKRMDEQRVLL 23
>pdb|1Z9H|A Chain A, Microsomal Prostaglandin E Synthase Type-2
pdb|1Z9H|B Chain B, Microsomal Prostaglandin E Synthase Type-2
pdb|1Z9H|C Chain C, Microsomal Prostaglandin E Synthase Type-2
pdb|1Z9H|D Chain D, Microsomal Prostaglandin E Synthase Type-2
pdb|2PBJ|A Chain A, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
pdb|2PBJ|B Chain B, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
pdb|2PBJ|C Chain C, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
pdb|2PBJ|D Chain D, Gsh-Heme Bound Microsomal Prostaglandin E Synthase
Length = 290
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQA 219
L+E I YY MK +ND QG+ GN Y+L+ N K+A
Sbjct: 95 LEEIITYYPA----MKAVND---QGKEVTEFGNKYWLMLNEKEA 131
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 26/135 (19%)
Query: 108 NTLKVM----GKYDEAMVCCKRHLEISRQLNDKLSE--GRALYNLGNVYHAKGKAIGKVG 161
N L V+ GKY EA CKR LEI ++ K + L NL + +GKA
Sbjct: 89 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA----- 143
Query: 162 QQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIY 221
EEV+ + A++ Y L D + NL + Y G ++ A
Sbjct: 144 --------EEVEYYYRRALEIYATRLG-----PDDPNVAKTKNNLASCYLKQGKYQDAET 190
Query: 222 YHQERLKIA--REFG 234
++E L A +EFG
Sbjct: 191 LYKEILTRAHEKEFG 205
>pdb|4G5Q|E Chain E, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|F Chain F, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|G Chain G, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|H Chain H, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5R|E Chain E, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|F Chain F, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|G Chain G, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|Z Chain Z, Structure Of Lgn Gl4GALPHAI3 COMPLEX
Length = 25
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 14/20 (70%), Positives = 17/20 (85%)
Query: 567 DEDFFSLITRLQSGRMEDQR 586
DEDFFSLI R Q+ RM++QR
Sbjct: 1 DEDFFSLILRSQAKRMDEQR 20
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 36 GDCRAGVAFFQAAIQAGTD---DLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLAR 91
GD + AI+ G + D R ++ Y+++GN+YF Y+ A+ ++ + L R
Sbjct: 52 GDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 36 GDCRAGVAFFQAAIQAGTD---DLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLAR 91
GD + AI+ G + D R ++ Y+++GN+YF Y+ A+ ++ + L R
Sbjct: 52 GDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
>pdb|1GMW|D Chain D, Structure Of Uree
Length = 143
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLI 308
A+ACY+LGN + L+ P + YH H++
Sbjct: 86 AKACYALGNRHVPLQIXPGELRYHHDHVL 114
>pdb|1GMW|A Chain A, Structure Of Uree
pdb|1GMW|B Chain B, Structure Of Uree
pdb|1GMW|C Chain C, Structure Of Uree
Length = 143
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLI 308
A+ACY+LGN + L+ P + YH H++
Sbjct: 86 AKACYALGNRHVPLQIXPGELRYHHDHVL 114
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 36 GDCRAGVAFFQAAIQAGTD---DLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLAR 91
GD + AI+ G + D R ++ Y+++GN+YF Y+ A+ ++ + L R
Sbjct: 52 GDYNKCRELCEKAIEVGRENREDYRMIAYAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
>pdb|1GMU|A Chain A, Structure Of Uree
pdb|1GMU|B Chain B, Structure Of Uree
pdb|1GMU|C Chain C, Structure Of Uree
pdb|1GMU|D Chain D, Structure Of Uree
Length = 143
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLI 308
A+ACY+LGN + L+ P + YH H++
Sbjct: 86 AKACYALGNRHVPLQIMPGELRYHHDHVL 114
>pdb|1GMV|A Chain A, Structure Of Uree
pdb|1GMV|B Chain B, Structure Of Uree
Length = 143
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLI 308
A+ACY LGN + L+ P + YH H++
Sbjct: 86 AKACYHLGNRHVPLQIMPGELRYHADHVL 114
>pdb|1ORJ|A Chain A, Flagellar Export Chaperone
pdb|1ORJ|B Chain B, Flagellar Export Chaperone
pdb|1ORJ|C Chain C, Flagellar Export Chaperone
pdb|1ORJ|D Chain D, Flagellar Export Chaperone
Length = 130
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 116 YDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVY-----------HAKGKAIGK 159
YD+A+ C +R +EI Q+N+ + N+ VY H KGK I K
Sbjct: 26 YDKAIECLERAIEIYDQVNELEKRKEFVENIDRVYDIISALKSFLDHEKGKEIAK 80
>pdb|1ORY|A Chain A, Flagellar Export Chaperone In Complex With Its Cognate
Binding Partner
Length = 130
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 116 YDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVY-----------HAKGKAIGK 159
YD+A+ C +R +EI Q+N+ + N+ VY H KGK I K
Sbjct: 26 YDKAIECLERAIEIYDQVNELEKRKEFVENIDRVYDIISALKSFLDHEKGKEIAK 80
>pdb|3OOU|A Chain A, The Structure Of A Protein With Unkown Function From
Listeria Innocua
Length = 108
Score = 28.9 bits (63), Expect = 8.1, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 133 LNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEY 168
+ + SEG +L LGN +H +G++ Q++ GE+
Sbjct: 14 ITEHFSEGXSLKTLGNDFHINAVYLGQLFQKEXGEH 49
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 184 EQNLALMKEINDTAAQGRAC--GNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERR 241
E ++A +K ++ + Q A N GN ++ NF +AI Y+Q +++ E
Sbjct: 3 EPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL------DPNEPV 56
Query: 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV-EAQACYSLGN 288
SN+ +I G+ + E + L + D + A A SLGN
Sbjct: 57 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGN 104
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 184 EQNLALMKEINDTAAQGRAC--GNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERR 241
E ++A +K ++ + Q A N GN ++ NF +AI Y+Q +++ E
Sbjct: 7 EPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL------DPNEPV 60
Query: 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV-EAQACYSLGN 288
SN+ +I G+ + E + L + D + A A SLGN
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGN 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,214,953
Number of Sequences: 62578
Number of extensions: 660333
Number of successful extensions: 1813
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1532
Number of HSP's gapped (non-prelim): 112
length of query: 609
length of database: 14,973,337
effective HSP length: 105
effective length of query: 504
effective length of database: 8,402,647
effective search space: 4234934088
effective search space used: 4234934088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)