Query psy10738
Match_columns 609
No_of_seqs 1704 out of 2401
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 17:16:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1130|consensus 100.0 3.8E-91 8.3E-96 665.9 41.4 563 16-590 11-616 (639)
2 KOG1130|consensus 100.0 2.1E-53 4.5E-58 407.0 31.1 510 7-570 24-626 (639)
3 KOG4626|consensus 100.0 1.8E-33 3.9E-38 282.4 17.4 313 3-381 153-477 (966)
4 KOG4626|consensus 100.0 8.9E-33 1.9E-37 277.4 15.2 314 2-381 118-443 (966)
5 TIGR00990 3a0801s09 mitochondr 99.9 7.4E-25 1.6E-29 242.8 30.0 325 3-381 130-563 (615)
6 TIGR00990 3a0801s09 mitochondr 99.9 5.7E-23 1.2E-27 227.7 30.9 301 22-380 127-487 (615)
7 KOG1840|consensus 99.9 8.6E-21 1.9E-25 197.2 39.0 279 58-356 197-486 (508)
8 KOG1840|consensus 99.9 5.1E-20 1.1E-24 191.5 36.8 273 22-314 199-484 (508)
9 PRK11447 cellulose synthase su 99.9 6.3E-21 1.4E-25 225.0 31.3 338 5-386 274-737 (1157)
10 PRK15174 Vi polysaccharide exp 99.9 1.7E-20 3.8E-25 207.6 32.3 324 7-385 49-416 (656)
11 PRK15174 Vi polysaccharide exp 99.9 7E-21 1.5E-25 210.7 29.1 297 25-381 45-373 (656)
12 TIGR02917 PEP_TPR_lipo putativ 99.9 2E-20 4.4E-25 217.4 29.4 317 3-381 536-892 (899)
13 PRK11788 tetratricopeptide rep 99.9 1.8E-19 3.9E-24 189.3 32.4 277 23-350 36-312 (389)
14 PRK11447 cellulose synthase su 99.9 3.8E-20 8.2E-25 218.4 29.8 326 27-381 274-692 (1157)
15 TIGR02917 PEP_TPR_lipo putativ 99.9 8.1E-20 1.8E-24 212.3 30.0 316 5-381 436-791 (899)
16 KOG1126|consensus 99.9 1.2E-20 2.7E-25 193.6 18.6 294 21-380 318-611 (638)
17 KOG1941|consensus 99.8 1.4E-18 3E-23 165.7 28.6 333 24-378 8-349 (518)
18 KOG1126|consensus 99.8 4E-20 8.7E-25 189.9 17.4 266 25-351 356-622 (638)
19 PRK11788 tetratricopeptide rep 99.8 4.6E-18 1E-22 178.6 33.7 294 4-349 39-347 (389)
20 KOG2003|consensus 99.8 4E-20 8.7E-25 180.5 11.5 195 176-421 506-700 (840)
21 KOG1155|consensus 99.8 7.3E-18 1.6E-22 165.8 26.6 286 28-373 268-554 (559)
22 KOG0547|consensus 99.8 5.7E-18 1.2E-22 167.6 24.9 277 22-352 115-494 (606)
23 KOG0547|consensus 99.8 3.1E-18 6.7E-23 169.4 22.4 310 2-353 117-570 (606)
24 KOG1155|consensus 99.8 1.1E-17 2.5E-22 164.5 24.5 292 28-379 233-526 (559)
25 KOG2002|consensus 99.8 3E-17 6.6E-22 174.7 29.3 315 22-381 164-517 (1018)
26 KOG2002|consensus 99.8 2.3E-17 5E-22 175.6 27.8 288 38-377 252-547 (1018)
27 KOG1941|consensus 99.8 2.1E-16 4.6E-21 150.9 30.0 304 29-353 50-364 (518)
28 KOG1173|consensus 99.8 2.3E-17 5E-22 166.3 23.7 287 24-370 246-533 (611)
29 PRK09782 bacteriophage N4 rece 99.8 5.5E-17 1.2E-21 183.9 25.9 229 62-350 479-707 (987)
30 PRK10049 pgaA outer membrane p 99.8 2.9E-16 6.3E-21 177.7 31.5 328 3-381 52-448 (765)
31 PRK09782 bacteriophage N4 rece 99.8 1.3E-16 2.7E-21 181.1 26.9 283 26-379 481-763 (987)
32 PRK10049 pgaA outer membrane p 99.8 4.8E-16 1E-20 175.8 31.0 344 8-381 23-414 (765)
33 PRK04841 transcriptional regul 99.8 1.3E-14 2.8E-19 169.2 42.6 308 27-356 414-767 (903)
34 KOG2076|consensus 99.7 1.2E-15 2.6E-20 161.7 30.0 311 19-381 136-504 (895)
35 PRK12370 invasion protein regu 99.7 5.7E-16 1.2E-20 169.0 27.4 268 18-347 254-533 (553)
36 KOG2003|consensus 99.7 4.4E-16 9.6E-21 152.5 21.7 285 28-377 425-711 (840)
37 KOG0548|consensus 99.7 2.2E-15 4.7E-20 151.8 25.6 329 24-381 4-447 (539)
38 PF13429 TPR_15: Tetratricopep 99.7 4E-17 8.7E-22 163.1 10.6 263 28-350 14-278 (280)
39 KOG1173|consensus 99.7 7.7E-16 1.7E-20 155.5 18.9 234 31-312 287-521 (611)
40 cd05804 StaR_like StaR_like; a 99.7 3.5E-14 7.6E-19 147.2 31.9 326 1-363 7-350 (355)
41 PRK04841 transcriptional regul 99.7 1.5E-13 3.3E-18 160.2 39.4 327 29-381 381-752 (903)
42 PRK11189 lipoprotein NlpI; Pro 99.7 7.2E-15 1.6E-19 147.3 22.8 226 34-310 38-266 (296)
43 TIGR02521 type_IV_pilW type IV 99.7 5.9E-15 1.3E-19 142.4 21.5 205 56-308 27-231 (234)
44 KOG0550|consensus 99.7 1.9E-15 4.1E-20 147.1 16.8 289 20-352 47-353 (486)
45 KOG1125|consensus 99.7 2E-15 4.3E-20 153.3 16.8 271 26-341 289-563 (579)
46 PRK12370 invasion protein regu 99.7 7.9E-15 1.7E-19 160.0 23.0 260 60-382 258-529 (553)
47 KOG2076|consensus 99.7 1E-13 2.2E-18 147.3 29.8 327 6-378 145-544 (895)
48 COG2956 Predicted N-acetylgluc 99.7 1.5E-13 3.2E-18 130.2 26.9 280 18-348 31-310 (389)
49 TIGR02521 type_IV_pilW type IV 99.7 2.5E-14 5.3E-19 138.1 22.7 202 22-269 31-232 (234)
50 KOG1129|consensus 99.6 3.3E-15 7.2E-20 141.0 15.1 240 21-312 222-461 (478)
51 KOG0624|consensus 99.6 4.3E-14 9.3E-19 134.4 22.6 281 22-350 38-371 (504)
52 KOG0548|consensus 99.6 3.8E-13 8.3E-18 135.8 30.1 319 6-373 8-473 (539)
53 KOG1129|consensus 99.6 7.6E-15 1.6E-19 138.7 16.5 268 29-350 186-459 (478)
54 COG3063 PilF Tfp pilus assembl 99.6 2.4E-14 5.1E-19 129.9 18.6 211 54-312 29-239 (250)
55 PF13429 TPR_15: Tetratricopep 99.6 3.8E-15 8.2E-20 148.8 14.3 258 64-381 12-269 (280)
56 PRK11189 lipoprotein NlpI; Pro 99.6 4.4E-14 9.5E-19 141.6 21.6 244 74-375 40-286 (296)
57 TIGR00540 hemY_coli hemY prote 99.6 3.8E-13 8.3E-18 141.5 28.6 286 22-356 84-406 (409)
58 COG3063 PilF Tfp pilus assembl 99.6 1.2E-13 2.7E-18 125.3 18.4 207 96-350 31-237 (250)
59 KOG1174|consensus 99.6 1.3E-12 2.9E-17 127.3 25.7 279 29-374 239-519 (564)
60 COG2956 Predicted N-acetylgluc 99.6 7.8E-13 1.7E-17 125.3 23.2 241 64-350 39-279 (389)
61 cd05804 StaR_like StaR_like; a 99.6 2.2E-12 4.7E-17 133.8 28.4 318 24-381 8-328 (355)
62 PRK10747 putative protoheme IX 99.6 2E-12 4.4E-17 135.3 27.6 272 21-350 83-391 (398)
63 TIGR00540 hemY_coli hemY prote 99.6 1.8E-12 4E-17 136.3 27.4 270 62-381 86-391 (409)
64 PF14938 SNAP: Soluble NSF att 99.6 1.2E-12 2.6E-17 130.3 24.3 227 98-346 33-263 (282)
65 PF14938 SNAP: Soluble NSF att 99.5 2.1E-12 4.6E-17 128.5 25.2 232 55-308 30-265 (282)
66 PRK14574 hmsH outer membrane p 99.5 8E-12 1.7E-16 139.5 29.1 346 5-379 73-503 (822)
67 KOG0550|consensus 99.5 8E-13 1.7E-17 129.1 17.6 270 5-312 54-353 (486)
68 KOG1125|consensus 99.5 4.2E-13 9E-18 136.6 16.2 256 64-377 289-559 (579)
69 PLN03218 maturation of RBCL 1; 99.5 2.3E-11 5E-16 139.5 31.0 319 3-378 440-772 (1060)
70 KOG1174|consensus 99.5 9.8E-12 2.1E-16 121.3 21.5 297 22-385 196-496 (564)
71 PLN03218 maturation of RBCL 1; 99.4 1E-10 2.2E-15 134.3 30.7 297 2-349 474-783 (1060)
72 PLN03081 pentatricopeptide (PP 99.4 6.6E-12 1.4E-16 141.6 20.8 252 2-306 160-452 (697)
73 PRK10747 putative protoheme IX 99.4 2.7E-11 5.9E-16 126.8 23.7 253 7-310 91-391 (398)
74 KOG4162|consensus 99.4 1.8E-10 3.8E-15 121.1 27.3 322 5-379 328-773 (799)
75 PRK14574 hmsH outer membrane p 99.4 1.6E-10 3.4E-15 129.2 28.8 327 5-354 107-518 (822)
76 KOG0495|consensus 99.4 1.3E-10 2.7E-15 119.7 23.6 264 29-347 591-878 (913)
77 PLN02789 farnesyltranstransfer 99.4 9.1E-11 2E-15 117.6 21.9 207 32-292 47-267 (320)
78 KOG4162|consensus 99.4 2.2E-10 4.7E-15 120.5 25.3 290 38-354 460-788 (799)
79 PLN03081 pentatricopeptide (PP 99.4 4.9E-11 1.1E-15 134.6 22.2 285 3-348 262-556 (697)
80 TIGR03302 OM_YfiO outer membra 99.4 5.6E-11 1.2E-15 115.5 19.6 195 19-269 30-232 (235)
81 smart00390 GoLoco LGN motif, p 99.4 2.9E-13 6.2E-18 77.2 1.9 24 536-559 1-24 (26)
82 PF02188 GoLoco: GoLoco motif; 99.4 1.6E-13 3.5E-18 76.5 0.6 21 537-557 2-22 (23)
83 PLN03077 Protein ECB2; Provisi 99.3 2.5E-10 5.4E-15 132.0 26.4 254 62-379 426-710 (857)
84 KOG1156|consensus 99.3 1.4E-09 3.1E-14 112.3 28.2 285 24-350 43-435 (700)
85 KOG0624|consensus 99.3 1.7E-10 3.7E-15 110.2 19.4 266 4-312 76-373 (504)
86 TIGR03302 OM_YfiO outer membra 99.3 1.2E-10 2.6E-15 113.2 18.2 194 58-309 31-232 (235)
87 KOG2300|consensus 99.3 3.8E-08 8.3E-13 98.5 35.6 236 116-377 291-542 (629)
88 PF02188 GoLoco: GoLoco motif; 99.3 5.6E-13 1.2E-17 74.3 0.9 23 567-589 1-23 (23)
89 PLN02789 farnesyltranstransfer 99.3 4.3E-10 9.3E-15 112.8 21.8 217 62-332 39-267 (320)
90 PF12569 NARP1: NMDA receptor- 99.3 2.8E-09 6.1E-14 113.0 28.7 301 27-355 9-340 (517)
91 KOG0495|consensus 99.2 2.5E-09 5.3E-14 110.3 24.2 293 29-375 523-866 (913)
92 PF12569 NARP1: NMDA receptor- 99.2 1.8E-08 3.9E-13 107.0 31.4 322 7-377 11-392 (517)
93 smart00390 GoLoco LGN motif, p 99.2 3.3E-12 7.1E-17 72.9 1.6 24 567-590 1-24 (26)
94 KOG1127|consensus 99.2 1.2E-09 2.7E-14 117.3 19.9 194 3-230 495-701 (1238)
95 PLN03077 Protein ECB2; Provisi 99.2 4E-09 8.7E-14 122.1 25.7 257 30-348 432-719 (857)
96 KOG2376|consensus 99.2 3.1E-07 6.7E-12 94.4 34.9 338 6-373 85-505 (652)
97 PRK15359 type III secretion sy 99.2 3E-10 6.5E-15 100.8 11.9 125 42-211 13-137 (144)
98 KOG1156|consensus 99.2 2.5E-08 5.3E-13 103.4 27.3 242 24-313 9-252 (700)
99 KOG3785|consensus 99.1 1.5E-08 3.3E-13 97.5 22.6 299 29-380 64-448 (557)
100 KOG1127|consensus 99.1 8.8E-09 1.9E-13 110.9 23.2 233 73-353 471-704 (1238)
101 KOG1128|consensus 99.1 5.4E-09 1.2E-13 109.6 18.9 312 5-374 403-733 (777)
102 PRK15359 type III secretion sy 99.1 1.3E-09 2.9E-14 96.6 12.5 112 26-153 28-139 (144)
103 KOG0553|consensus 99.1 1.1E-09 2.3E-14 104.0 12.2 116 24-155 83-198 (304)
104 PRK10370 formate-dependent nit 99.1 8.2E-09 1.8E-13 96.7 17.9 127 73-235 52-179 (198)
105 PRK14720 transcript cleavage f 99.1 1.1E-08 2.5E-13 113.2 21.3 242 60-351 31-285 (906)
106 KOG1585|consensus 99.0 2.4E-07 5.1E-12 85.2 25.2 241 40-304 11-251 (308)
107 PRK10370 formate-dependent nit 99.0 5.9E-09 1.3E-13 97.7 15.4 152 7-194 23-178 (198)
108 COG3071 HemY Uncharacterized e 99.0 2.4E-07 5.1E-12 91.3 26.4 273 24-353 86-394 (400)
109 PRK15179 Vi polysaccharide bio 99.0 1.4E-08 3E-13 111.8 19.7 168 63-271 52-219 (694)
110 PRK14720 transcript cleavage f 99.0 1.4E-08 3.1E-13 112.5 18.6 231 94-371 25-268 (906)
111 KOG3617|consensus 99.0 7.7E-07 1.7E-11 94.3 30.2 251 66-348 832-1173(1416)
112 PF10345 Cohesin_load: Cohesin 99.0 6E-06 1.3E-10 91.4 38.9 322 38-381 37-425 (608)
113 COG5010 TadD Flp pilus assembl 99.0 1.2E-08 2.5E-13 95.3 14.4 180 37-265 48-227 (257)
114 PRK10866 outer membrane biogen 98.9 3.1E-07 6.7E-12 88.8 23.2 188 21-264 31-236 (243)
115 KOG1128|consensus 98.9 2E-08 4.3E-13 105.4 15.6 221 26-315 402-622 (777)
116 PRK15179 Vi polysaccharide bio 98.9 4.4E-08 9.6E-13 107.8 19.2 160 31-232 58-220 (694)
117 PF10345 Cohesin_load: Cohesin 98.9 4.1E-05 8.8E-10 84.9 42.5 327 29-376 66-465 (608)
118 COG5010 TadD Flp pilus assembl 98.9 2.4E-08 5.3E-13 93.2 14.0 158 26-225 70-227 (257)
119 KOG2376|consensus 98.9 2.4E-06 5.3E-11 88.0 29.4 206 24-269 14-253 (652)
120 KOG2300|consensus 98.9 9E-06 2E-10 81.9 32.6 299 21-345 211-552 (629)
121 KOG3785|consensus 98.9 1.7E-07 3.7E-12 90.4 19.5 274 30-355 30-351 (557)
122 PF13424 TPR_12: Tetratricopep 98.9 3.3E-08 7.1E-13 77.7 11.5 75 197-271 2-77 (78)
123 TIGR02552 LcrH_SycD type III s 98.9 2.5E-08 5.5E-13 87.6 11.5 112 43-190 4-115 (135)
124 PLN03088 SGT1, suppressor of 98.9 3.7E-08 8.1E-13 101.2 14.1 98 24-131 4-101 (356)
125 KOG1585|consensus 98.8 1.4E-06 3E-11 80.2 22.4 212 136-370 27-238 (308)
126 KOG4340|consensus 98.8 2.6E-07 5.6E-12 87.3 18.1 223 32-304 20-265 (459)
127 KOG1586|consensus 98.8 3.2E-06 7E-11 77.4 24.3 194 61-275 35-230 (288)
128 PF13525 YfiO: Outer membrane 98.8 6.4E-07 1.4E-11 84.5 21.0 107 23-133 6-123 (203)
129 KOG1586|consensus 98.8 2E-06 4.3E-11 78.8 22.7 204 112-356 26-231 (288)
130 PF13424 TPR_12: Tetratricopep 98.8 6.2E-08 1.3E-12 76.1 11.4 76 137-232 2-78 (78)
131 KOG3060|consensus 98.8 1.4E-06 3.1E-11 80.8 21.5 195 74-312 26-223 (289)
132 PRK15363 pathogenicity island 98.8 7.9E-08 1.7E-12 84.0 12.6 99 23-131 36-134 (157)
133 KOG3617|consensus 98.8 1.4E-05 3.1E-10 85.0 30.9 232 55-306 853-1171(1416)
134 COG3071 HemY Uncharacterized e 98.8 3.7E-06 7.9E-11 83.1 24.6 238 23-311 119-392 (400)
135 KOG0553|consensus 98.8 6.5E-08 1.4E-12 92.1 12.0 122 98-257 79-200 (304)
136 KOG4340|consensus 98.8 3E-06 6.5E-11 80.2 22.6 170 25-224 47-265 (459)
137 CHL00033 ycf3 photosystem I as 98.8 2.1E-07 4.5E-12 85.2 14.9 130 33-193 10-146 (168)
138 TIGR02552 LcrH_SycD type III s 98.8 9.6E-08 2.1E-12 83.9 12.2 114 82-233 5-118 (135)
139 PF13525 YfiO: Outer membrane 98.8 1.5E-06 3.3E-11 82.0 21.0 194 60-300 5-198 (203)
140 PF09976 TPR_21: Tetratricopep 98.8 8.4E-07 1.8E-11 78.9 18.1 133 24-187 13-145 (145)
141 PF12895 Apc3: Anaphase-promot 98.7 7.5E-08 1.6E-12 76.8 9.8 83 35-126 2-84 (84)
142 PRK02603 photosystem I assembl 98.7 1.4E-06 3E-11 80.0 19.1 103 94-225 29-131 (172)
143 PF09976 TPR_21: Tetratricopep 98.7 1.3E-06 2.8E-11 77.8 18.2 123 212-347 23-145 (145)
144 KOG2047|consensus 98.7 3.6E-05 7.8E-10 80.3 30.6 287 58-377 246-603 (835)
145 KOG3060|consensus 98.7 8.8E-06 1.9E-10 75.6 23.6 198 31-272 21-223 (289)
146 CHL00033 ycf3 photosystem I as 98.7 4.9E-07 1.1E-11 82.7 15.8 113 238-353 33-146 (168)
147 PRK10866 outer membrane biogen 98.7 5.7E-06 1.2E-10 80.0 23.8 188 99-344 31-236 (243)
148 PRK02603 photosystem I assembl 98.7 1E-06 2.3E-11 80.9 17.3 109 193-310 28-143 (172)
149 PRK15363 pathogenicity island 98.7 3.3E-07 7.1E-12 80.2 12.8 103 97-231 32-134 (157)
150 KOG1915|consensus 98.7 4.4E-05 9.5E-10 76.9 28.3 302 29-361 214-597 (677)
151 KOG1915|consensus 98.7 2.8E-05 6.1E-10 78.3 26.7 271 35-348 187-499 (677)
152 COG2909 MalT ATP-dependent tra 98.6 7.6E-05 1.7E-09 81.1 31.5 261 62-346 417-685 (894)
153 COG2909 MalT ATP-dependent tra 98.6 7.4E-05 1.6E-09 81.2 31.0 322 29-381 354-680 (894)
154 KOG2047|consensus 98.6 4.8E-05 1E-09 79.4 28.3 304 29-375 394-709 (835)
155 COG4783 Putative Zn-dependent 98.6 3.2E-06 6.9E-11 85.7 17.5 112 28-155 312-423 (484)
156 PLN03088 SGT1, suppressor of 98.6 6.9E-07 1.5E-11 91.9 12.8 96 63-190 5-100 (356)
157 PF13414 TPR_11: TPR repeat; P 98.5 3.2E-07 7E-12 70.0 7.6 65 60-130 3-68 (69)
158 COG4785 NlpI Lipoprotein NlpI, 98.5 1.4E-05 3.1E-10 72.4 18.7 242 42-336 47-291 (297)
159 TIGR02795 tol_pal_ybgF tol-pal 98.5 1.4E-06 3.1E-11 74.3 12.1 103 25-131 5-107 (119)
160 COG4783 Putative Zn-dependent 98.5 3.7E-05 8E-10 78.2 23.6 152 138-350 304-455 (484)
161 KOG2471|consensus 98.5 1.4E-05 3E-10 80.6 20.1 125 23-153 241-382 (696)
162 KOG1463|consensus 98.5 0.00027 5.9E-09 68.5 27.4 298 26-348 8-315 (411)
163 KOG1464|consensus 98.5 2E-05 4.3E-10 73.8 18.8 241 34-294 39-286 (440)
164 cd00189 TPR Tetratricopeptide 98.5 1.2E-06 2.6E-11 70.5 9.6 96 25-130 3-98 (100)
165 PRK10803 tol-pal system protei 98.4 2.7E-06 5.8E-11 83.0 12.3 104 25-132 145-249 (263)
166 PRK10153 DNA-binding transcrip 98.4 6.3E-06 1.4E-10 88.4 16.2 143 17-190 334-483 (517)
167 COG5159 RPN6 26S proteasome re 98.4 0.00036 7.7E-09 66.1 25.1 228 28-276 9-242 (421)
168 COG0457 NrfG FOG: TPR repeat [ 98.4 0.00018 3.8E-09 68.2 24.2 232 35-312 36-268 (291)
169 PF12895 Apc3: Anaphase-promot 98.4 3.3E-06 7.1E-11 67.3 10.0 83 73-186 2-84 (84)
170 KOG3616|consensus 98.4 0.00037 8.1E-09 73.6 27.1 288 60-350 661-1025(1636)
171 KOG0543|consensus 98.4 3.4E-06 7.4E-11 83.9 11.8 116 28-155 214-340 (397)
172 PF04733 Coatomer_E: Coatomer 98.4 7.2E-07 1.6E-11 88.5 7.0 253 28-348 7-264 (290)
173 cd00189 TPR Tetratricopeptide 98.4 2.6E-06 5.5E-11 68.5 9.2 96 62-189 2-97 (100)
174 TIGR02795 tol_pal_ybgF tol-pal 98.3 5.8E-06 1.3E-10 70.5 11.5 104 61-190 3-106 (119)
175 COG3898 Uncharacterized membra 98.3 0.00084 1.8E-08 66.4 27.2 269 24-348 122-391 (531)
176 PF13414 TPR_11: TPR repeat; P 98.3 1.8E-06 4E-11 65.8 7.4 63 141-229 4-67 (69)
177 KOG0543|consensus 98.3 5.5E-06 1.2E-10 82.5 12.5 109 200-314 208-325 (397)
178 COG4105 ComL DNA uptake lipopr 98.3 0.00011 2.4E-09 69.3 20.3 190 20-262 32-226 (254)
179 KOG1464|consensus 98.3 7.7E-05 1.7E-09 70.0 18.2 240 73-334 40-286 (440)
180 KOG3616|consensus 98.3 0.0024 5.2E-08 67.8 30.9 187 100-307 661-909 (1636)
181 PRK11906 transcriptional regul 98.3 2.3E-05 5E-10 80.1 16.1 164 21-225 252-432 (458)
182 PF10300 DUF3808: Protein of u 98.3 0.00096 2.1E-08 71.2 28.3 299 28-352 2-379 (468)
183 COG3898 Uncharacterized membra 98.3 0.0026 5.7E-08 63.0 28.5 291 26-377 88-380 (531)
184 PF13432 TPR_16: Tetratricopep 98.3 4E-06 8.6E-11 63.1 7.5 59 27-89 2-60 (65)
185 KOG4234|consensus 98.3 1.9E-05 4.1E-10 70.7 12.6 103 24-132 97-200 (271)
186 PF12688 TPR_5: Tetratrico pep 98.3 2.9E-05 6.4E-10 65.7 13.3 100 25-128 4-103 (120)
187 KOG2471|consensus 98.3 7.8E-05 1.7E-09 75.4 18.2 314 22-374 17-383 (696)
188 COG4785 NlpI Lipoprotein NlpI, 98.2 6.8E-05 1.5E-09 68.1 16.0 234 14-297 57-292 (297)
189 COG0457 NrfG FOG: TPR repeat [ 98.2 0.00045 9.7E-09 65.4 23.3 205 24-272 61-268 (291)
190 PRK10153 DNA-binding transcrip 98.2 3.9E-05 8.5E-10 82.3 17.0 149 51-234 332-487 (517)
191 PF12688 TPR_5: Tetratrico pep 98.2 2.9E-05 6.3E-10 65.7 12.7 102 141-268 2-103 (120)
192 KOG4555|consensus 98.2 6.3E-05 1.4E-09 62.6 13.4 103 22-130 43-145 (175)
193 PRK10803 tol-pal system protei 98.2 3E-05 6.5E-10 75.6 13.3 103 242-350 144-247 (263)
194 KOG1070|consensus 98.2 0.00081 1.7E-08 76.2 25.6 224 39-310 1441-1664(1710)
195 PRK15331 chaperone protein Sic 98.2 3.1E-05 6.8E-10 68.2 11.9 96 23-128 38-133 (165)
196 COG1729 Uncharacterized protei 98.2 1.8E-05 3.9E-10 75.3 11.2 103 25-131 144-246 (262)
197 KOG1070|consensus 98.1 0.00073 1.6E-08 76.6 24.4 197 31-270 1467-1664(1710)
198 PRK11906 transcriptional regul 98.1 9.8E-05 2.1E-09 75.6 16.4 147 48-232 240-404 (458)
199 PF13432 TPR_16: Tetratricopep 98.1 6.3E-06 1.4E-10 62.0 5.9 62 64-131 1-62 (65)
200 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 6.9E-05 1.5E-09 77.0 14.6 117 30-185 177-293 (395)
201 COG4105 ComL DNA uptake lipopr 98.1 0.00096 2.1E-08 63.1 20.5 194 60-303 34-227 (254)
202 KOG1463|consensus 98.1 0.0014 3E-08 63.7 21.7 250 105-375 9-264 (411)
203 KOG4234|consensus 98.0 6.9E-05 1.5E-09 67.2 11.8 107 200-313 95-201 (271)
204 KOG4555|consensus 98.0 0.00018 3.8E-09 60.0 13.2 102 202-311 45-146 (175)
205 PF14559 TPR_19: Tetratricopep 98.0 1.7E-05 3.7E-10 60.1 6.9 66 32-107 1-66 (68)
206 KOG4648|consensus 98.0 2.8E-05 6.1E-10 75.1 9.5 98 25-132 100-197 (536)
207 COG4235 Cytochrome c biogenesi 98.0 0.00013 2.9E-09 70.3 14.2 120 37-192 137-259 (287)
208 KOG2796|consensus 98.0 0.0015 3.1E-08 61.4 19.3 142 101-273 178-319 (366)
209 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00011 2.4E-09 75.5 13.0 117 207-344 176-292 (395)
210 KOG3081|consensus 97.9 0.0013 2.8E-08 62.0 18.4 149 202-381 110-262 (299)
211 PF04733 Coatomer_E: Coatomer 97.9 6.2E-06 1.3E-10 81.9 3.4 156 64-266 106-262 (290)
212 PF08631 SPO22: Meiosis protei 97.9 0.013 2.8E-07 58.2 26.9 98 32-130 3-113 (278)
213 KOG4642|consensus 97.9 6.2E-05 1.3E-09 69.4 9.3 109 17-135 5-113 (284)
214 COG4235 Cytochrome c biogenesi 97.9 0.00018 3.9E-09 69.4 12.6 111 96-235 152-262 (287)
215 PF08631 SPO22: Meiosis protei 97.9 0.031 6.7E-07 55.5 28.8 250 70-347 3-273 (278)
216 KOG3081|consensus 97.9 0.0035 7.5E-08 59.2 20.1 247 29-344 15-265 (299)
217 COG5159 RPN6 26S proteasome re 97.9 0.0037 8.1E-08 59.4 20.2 233 104-356 7-242 (421)
218 PF13512 TPR_18: Tetratricopep 97.9 0.00016 3.6E-09 62.3 10.5 108 21-132 9-131 (142)
219 PRK15331 chaperone protein Sic 97.8 0.0003 6.6E-09 62.0 11.9 97 60-188 37-133 (165)
220 COG1729 Uncharacterized protei 97.8 0.00023 5.1E-09 67.8 11.6 102 243-350 144-245 (262)
221 KOG2610|consensus 97.8 0.011 2.4E-07 57.5 22.6 165 29-227 110-274 (491)
222 PF13371 TPR_9: Tetratricopept 97.8 0.00015 3.3E-09 55.7 8.5 57 29-89 2-58 (73)
223 KOG0551|consensus 97.8 0.00017 3.7E-09 69.8 10.2 102 24-131 83-184 (390)
224 KOG2796|consensus 97.7 0.0031 6.7E-08 59.3 17.6 177 27-234 127-320 (366)
225 COG4700 Uncharacterized protei 97.7 0.0025 5.5E-08 56.8 15.5 161 107-310 63-223 (251)
226 PF10602 RPN7: 26S proteasome 97.7 0.0029 6.2E-08 58.0 16.4 132 176-310 12-143 (177)
227 PLN03098 LPA1 LOW PSII ACCUMUL 97.7 0.00016 3.6E-09 73.9 8.9 65 59-129 74-141 (453)
228 PF02259 FAT: FAT domain; Int 97.7 0.078 1.7E-06 54.6 29.0 129 196-332 142-304 (352)
229 KOG0545|consensus 97.6 0.00082 1.8E-08 62.4 11.4 112 15-132 171-296 (329)
230 COG4700 Uncharacterized protei 97.6 0.0033 7.1E-08 56.1 14.5 134 202-351 91-224 (251)
231 PF12862 Apc5: Anaphase-promot 97.6 0.00086 1.9E-08 54.4 10.3 81 291-371 9-92 (94)
232 PF10602 RPN7: 26S proteasome 97.6 0.0029 6.4E-08 57.9 14.7 130 218-350 14-143 (177)
233 PF13371 TPR_9: Tetratricopept 97.6 0.00028 6E-09 54.2 6.8 60 66-131 1-60 (73)
234 PF14559 TPR_19: Tetratricopep 97.5 0.00021 4.5E-09 54.1 5.8 55 71-131 2-56 (68)
235 PF12968 DUF3856: Domain of Un 97.5 0.018 3.9E-07 47.4 16.4 112 242-353 9-133 (144)
236 PLN03098 LPA1 LOW PSII ACCUMUL 97.5 0.00025 5.3E-09 72.6 7.3 71 96-189 71-141 (453)
237 KOG4648|consensus 97.5 0.00035 7.5E-09 67.8 7.8 96 64-191 101-196 (536)
238 PF12862 Apc5: Anaphase-promot 97.5 0.0025 5.5E-08 51.7 11.8 81 250-330 8-91 (94)
239 PF11817 Foie-gras_1: Foie gra 97.4 0.11 2.4E-06 50.5 24.7 84 260-343 158-241 (247)
240 PF12968 DUF3856: Domain of Un 97.4 0.018 3.9E-07 47.4 15.7 115 59-193 6-133 (144)
241 PF04184 ST7: ST7 protein; In 97.4 0.0088 1.9E-07 61.6 17.0 210 106-353 174-418 (539)
242 PF10300 DUF3808: Protein of u 97.4 0.015 3.2E-07 62.2 19.7 109 75-216 248-356 (468)
243 KOG2610|consensus 97.4 0.016 3.5E-07 56.5 17.4 161 69-265 112-272 (491)
244 PF13512 TPR_18: Tetratricopep 97.4 0.0017 3.7E-08 56.1 9.8 106 201-312 11-131 (142)
245 KOG4322|consensus 97.4 0.11 2.3E-06 52.7 23.5 191 138-348 271-470 (482)
246 COG2976 Uncharacterized protei 97.3 0.034 7.3E-07 50.4 18.0 137 204-350 35-189 (207)
247 KOG3783|consensus 97.3 0.24 5.2E-06 51.9 26.5 78 273-350 442-521 (546)
248 KOG0551|consensus 97.3 0.0022 4.7E-08 62.4 11.1 127 35-189 55-182 (390)
249 KOG2053|consensus 97.3 0.16 3.5E-06 56.0 25.9 212 23-269 44-255 (932)
250 KOG2053|consensus 97.3 0.12 2.6E-06 57.0 24.7 230 30-309 17-255 (932)
251 KOG4322|consensus 97.2 0.13 2.9E-06 52.0 22.7 194 96-309 269-471 (482)
252 KOG3783|consensus 97.2 0.17 3.6E-06 53.0 23.7 246 40-312 251-523 (546)
253 PF06552 TOM20_plant: Plant sp 97.2 0.0038 8.3E-08 55.8 10.2 84 38-131 7-104 (186)
254 KOG2581|consensus 97.1 0.34 7.5E-06 48.8 24.2 250 28-302 36-309 (493)
255 KOG4642|consensus 97.1 0.0013 2.8E-08 60.9 6.6 101 63-195 13-113 (284)
256 PF04184 ST7: ST7 protein; In 97.1 0.052 1.1E-06 56.1 18.6 127 68-226 176-321 (539)
257 KOG1550|consensus 97.1 0.13 2.9E-06 56.3 23.4 255 36-349 263-538 (552)
258 KOG1839|consensus 97.0 0.011 2.4E-07 67.5 14.7 189 23-232 933-1131(1236)
259 PF03704 BTAD: Bacterial trans 97.0 0.031 6.7E-07 49.5 15.0 103 23-131 7-127 (146)
260 PF09986 DUF2225: Uncharacteri 97.0 0.0092 2E-07 56.3 12.0 107 112-231 89-196 (214)
261 KOG2581|consensus 97.0 0.45 9.7E-06 48.0 23.6 180 19-220 123-307 (493)
262 PF06552 TOM20_plant: Plant sp 97.0 0.0084 1.8E-07 53.6 10.7 93 76-189 7-109 (186)
263 KOG1839|consensus 97.0 0.014 3E-07 66.8 14.8 192 60-272 932-1131(1236)
264 PF02259 FAT: FAT domain; Int 97.0 0.56 1.2E-05 48.2 28.5 132 236-375 142-307 (352)
265 PF11817 Foie-gras_1: Foie gra 97.0 0.41 8.9E-06 46.5 23.9 35 62-96 12-46 (247)
266 KOG1550|consensus 97.0 0.11 2.5E-06 56.8 21.5 268 37-371 227-517 (552)
267 PF09986 DUF2225: Uncharacteri 96.9 0.013 2.9E-07 55.2 12.0 98 253-350 90-195 (214)
268 PF13176 TPR_7: Tetratricopept 96.8 0.0031 6.7E-08 40.8 5.0 32 202-233 1-32 (36)
269 PF13431 TPR_17: Tetratricopep 96.8 0.0012 2.7E-08 42.0 3.0 34 44-81 1-34 (34)
270 PF13176 TPR_7: Tetratricopept 96.8 0.0035 7.6E-08 40.5 5.0 30 323-352 2-31 (36)
271 COG2976 Uncharacterized protei 96.8 0.13 2.8E-06 46.7 16.4 99 62-190 91-189 (207)
272 PF00515 TPR_1: Tetratricopept 96.7 0.0023 4.9E-08 40.7 3.7 31 201-231 2-32 (34)
273 PF08626 TRAPPC9-Trs120: Trans 96.6 0.5 1.1E-05 56.8 25.0 265 98-370 240-573 (1185)
274 PF00515 TPR_1: Tetratricopept 96.6 0.0034 7.5E-08 39.9 3.9 31 101-131 2-32 (34)
275 KOG2041|consensus 96.5 1.5 3.3E-05 47.3 24.7 63 60-125 692-759 (1189)
276 PF10579 Rapsyn_N: Rapsyn N-te 96.5 0.038 8.1E-07 42.1 9.5 73 23-96 7-79 (80)
277 COG5187 RPN7 26S proteasome re 96.5 0.51 1.1E-05 45.4 19.2 153 207-362 82-234 (412)
278 KOG0545|consensus 96.5 0.032 6.9E-07 52.1 10.9 104 60-189 178-293 (329)
279 KOG4507|consensus 96.5 0.033 7.1E-07 58.3 12.0 99 242-351 608-707 (886)
280 KOG0376|consensus 96.4 0.0041 8.9E-08 63.7 4.8 98 24-131 6-103 (476)
281 PF07719 TPR_2: Tetratricopept 96.4 0.005 1.1E-07 39.0 3.6 29 202-230 3-31 (34)
282 PF13428 TPR_14: Tetratricopep 96.4 0.0072 1.6E-07 41.1 4.5 41 62-108 3-43 (44)
283 PF03704 BTAD: Bacterial trans 96.3 0.14 3.1E-06 45.1 14.2 75 280-360 62-137 (146)
284 KOG4814|consensus 96.3 2 4.3E-05 46.1 26.4 107 58-190 352-458 (872)
285 PF07719 TPR_2: Tetratricopept 96.3 0.0067 1.4E-07 38.4 3.9 31 101-131 2-32 (34)
286 PF13281 DUF4071: Domain of un 96.2 0.72 1.6E-05 47.1 19.9 202 75-310 114-335 (374)
287 KOG0985|consensus 96.2 0.46 1E-05 53.2 19.1 193 98-342 1102-1334(1666)
288 PF13428 TPR_14: Tetratricopep 96.2 0.013 2.8E-07 39.8 5.1 39 26-68 5-43 (44)
289 KOG0687|consensus 96.1 0.69 1.5E-05 45.4 18.0 146 217-365 81-226 (393)
290 PF13431 TPR_17: Tetratricopep 96.0 0.0057 1.2E-07 38.9 2.5 33 82-120 1-33 (34)
291 PF13181 TPR_8: Tetratricopept 96.0 0.016 3.4E-07 36.7 4.6 31 201-231 2-32 (34)
292 PF13181 TPR_8: Tetratricopept 96.0 0.017 3.7E-07 36.5 4.5 31 101-131 2-32 (34)
293 KOG1308|consensus 95.9 0.0033 7.2E-08 61.5 1.3 94 27-130 119-212 (377)
294 PF08626 TRAPPC9-Trs120: Trans 95.9 1.6 3.4E-05 52.7 23.8 167 58-230 240-475 (1185)
295 PF05843 Suf: Suppressor of fo 95.9 0.098 2.1E-06 51.9 11.7 63 208-273 78-140 (280)
296 PF13281 DUF4071: Domain of un 95.8 0.28 6.1E-06 50.0 14.8 169 31-230 150-335 (374)
297 COG0790 FOG: TPR repeat, SEL1 95.8 0.98 2.1E-05 45.1 19.0 186 110-349 51-266 (292)
298 PF05843 Suf: Suppressor of fo 95.8 0.062 1.3E-06 53.4 10.1 136 202-352 3-139 (280)
299 COG0790 FOG: TPR repeat, SEL1 95.7 0.69 1.5E-05 46.2 17.3 177 29-254 48-236 (292)
300 KOG0687|consensus 95.6 1.7 3.6E-05 42.8 18.0 134 118-274 82-215 (393)
301 COG5187 RPN7 26S proteasome re 95.4 2.4 5.1E-05 41.0 18.2 137 114-273 89-225 (412)
302 KOG0890|consensus 95.3 7.5 0.00016 48.3 26.0 68 275-350 1665-1732(2382)
303 KOG0985|consensus 95.3 4.4 9.6E-05 45.9 22.1 208 35-303 1088-1335(1666)
304 PF04781 DUF627: Protein of un 95.3 0.22 4.7E-06 41.0 9.5 95 28-129 2-107 (111)
305 PF12739 TRAPPC-Trs85: ER-Golg 95.2 1.5 3.2E-05 46.3 18.4 178 141-352 209-402 (414)
306 PF10579 Rapsyn_N: Rapsyn N-te 95.2 0.21 4.5E-06 38.2 8.4 71 63-136 9-79 (80)
307 PF13374 TPR_10: Tetratricopep 95.1 0.054 1.2E-06 35.9 5.0 32 201-232 3-34 (42)
308 PF12739 TRAPPC-Trs85: ER-Golg 95.1 2.2 4.8E-05 44.9 19.3 178 61-272 209-402 (414)
309 PF13374 TPR_10: Tetratricopep 94.8 0.077 1.7E-06 35.1 4.9 33 321-353 3-35 (42)
310 KOG1914|consensus 94.7 7.1 0.00015 41.3 21.5 157 176-352 347-504 (656)
311 PF04910 Tcf25: Transcriptiona 94.4 2.5 5.4E-05 43.5 17.1 170 176-350 10-223 (360)
312 KOG4814|consensus 94.4 8.9 0.00019 41.4 25.3 108 99-232 353-460 (872)
313 KOG1538|consensus 94.4 2.3 5E-05 45.6 16.5 50 208-266 781-830 (1081)
314 PF04910 Tcf25: Transcriptiona 94.2 3 6.5E-05 42.9 17.2 175 96-312 36-225 (360)
315 KOG0686|consensus 94.2 3.6 7.9E-05 41.8 16.8 124 220-346 130-255 (466)
316 PF04781 DUF627: Protein of un 94.1 0.8 1.7E-05 37.7 10.0 104 106-227 2-105 (111)
317 PRK13184 pknD serine/threonine 93.8 16 0.00035 42.3 28.1 105 29-134 482-586 (932)
318 COG3118 Thioredoxin domain-con 93.8 3.3 7.1E-05 40.5 15.3 103 25-131 137-267 (304)
319 PF13174 TPR_6: Tetratricopept 93.7 0.079 1.7E-06 33.0 2.9 29 102-130 2-30 (33)
320 KOG0686|consensus 93.6 7.1 0.00015 39.8 17.6 108 136-266 146-255 (466)
321 KOG1308|consensus 93.4 0.021 4.6E-07 56.0 -0.1 120 213-344 127-246 (377)
322 KOG0376|consensus 93.4 0.083 1.8E-06 54.4 4.0 96 63-190 7-102 (476)
323 KOG2908|consensus 93.4 9.3 0.0002 38.0 17.8 100 252-351 87-188 (380)
324 KOG0890|consensus 93.2 22 0.00047 44.6 23.7 130 217-354 1646-1789(2382)
325 COG3118 Thioredoxin domain-con 93.2 4.2 9E-05 39.8 14.8 152 204-377 138-289 (304)
326 KOG1538|consensus 93.0 16 0.00034 39.6 21.3 189 64-306 636-830 (1081)
327 PF13174 TPR_6: Tetratricopept 93.0 0.21 4.6E-06 30.9 4.2 29 26-54 4-32 (33)
328 KOG4014|consensus 92.9 2.3 5E-05 38.3 11.7 95 74-189 41-141 (248)
329 KOG4014|consensus 92.9 2.1 4.6E-05 38.5 11.4 149 182-354 50-238 (248)
330 KOG2041|consensus 92.8 17 0.00038 39.6 27.7 80 28-126 740-822 (1189)
331 PF00244 14-3-3: 14-3-3 protei 92.7 9.9 0.00021 36.6 25.0 189 25-232 4-201 (236)
332 KOG1497|consensus 92.6 11 0.00025 37.1 22.7 128 237-367 100-229 (399)
333 PF15015 NYD-SP12_N: Spermatog 92.5 2.9 6.3E-05 42.6 13.1 105 24-134 178-296 (569)
334 PF04053 Coatomer_WDAD: Coatom 92.3 3.4 7.4E-05 43.8 14.3 95 29-155 268-362 (443)
335 KOG3824|consensus 92.0 0.45 9.8E-06 46.2 6.7 75 25-109 119-193 (472)
336 KOG4507|consensus 92.0 0.44 9.5E-06 50.2 7.0 96 28-132 613-708 (886)
337 PF07079 DUF1347: Protein of u 91.6 19 0.00041 37.4 29.0 142 23-190 7-158 (549)
338 PF07079 DUF1347: Protein of u 91.3 21 0.00045 37.2 25.9 165 195-374 374-544 (549)
339 PF08424 NRDE-2: NRDE-2, neces 91.1 19 0.00041 36.5 19.0 83 43-131 6-96 (321)
340 COG4649 Uncharacterized protei 90.8 11 0.00023 34.0 13.2 149 107-308 46-195 (221)
341 PF10516 SHNi-TPR: SHNi-TPR; 90.5 0.61 1.3E-05 30.4 4.1 32 322-353 3-34 (38)
342 PF14853 Fis1_TPR_C: Fis1 C-te 90.1 1.5 3.2E-05 31.0 6.2 28 62-89 3-30 (53)
343 smart00028 TPR Tetratricopepti 90.0 0.36 7.8E-06 28.9 2.9 28 202-229 3-30 (34)
344 smart00028 TPR Tetratricopepti 89.9 0.3 6.5E-06 29.3 2.5 28 102-129 3-30 (34)
345 PF09613 HrpB1_HrpK: Bacterial 89.5 4.2 9.1E-05 36.1 9.9 82 26-117 14-95 (160)
346 PF04190 DUF410: Protein of un 89.5 22 0.00048 34.7 21.3 143 107-269 17-170 (260)
347 PF10516 SHNi-TPR: SHNi-TPR; 89.3 0.91 2E-05 29.5 4.3 32 282-313 3-34 (38)
348 KOG2114|consensus 88.8 13 0.00029 41.4 14.9 50 82-131 349-399 (933)
349 PF14853 Fis1_TPR_C: Fis1 C-te 88.7 1.3 2.8E-05 31.3 5.1 33 25-57 4-36 (53)
350 PF04053 Coatomer_WDAD: Coatom 88.6 23 0.00051 37.5 16.7 158 70-306 271-428 (443)
351 PF04190 DUF410: Protein of un 88.2 27 0.00059 34.1 26.1 23 207-229 148-170 (260)
352 KOG2561|consensus 88.0 10 0.00022 39.0 12.6 126 100-235 163-302 (568)
353 PF08424 NRDE-2: NRDE-2, neces 87.9 31 0.00067 35.0 16.6 122 38-189 47-183 (321)
354 KOG2114|consensus 87.7 11 0.00024 42.0 13.6 50 181-230 348-398 (933)
355 PF09670 Cas_Cas02710: CRISPR- 87.5 31 0.00067 35.9 16.6 63 25-89 134-198 (379)
356 KOG1497|consensus 87.3 32 0.0007 34.1 23.3 108 197-305 100-209 (399)
357 PF00244 14-3-3: 14-3-3 protei 87.1 29 0.00064 33.3 21.9 178 63-271 4-200 (236)
358 KOG2908|consensus 86.8 36 0.00079 34.0 17.8 100 210-309 85-186 (380)
359 smart00101 14_3_3 14-3-3 homol 86.4 33 0.00071 33.1 24.5 187 26-231 5-202 (244)
360 PF10952 DUF2753: Protein of u 85.4 10 0.00023 31.8 9.2 70 243-312 4-82 (140)
361 PF10952 DUF2753: Protein of u 85.3 13 0.00029 31.2 9.7 70 283-352 4-82 (140)
362 PF04097 Nic96: Nup93/Nic96; 84.9 71 0.0015 35.7 19.2 18 30-47 266-283 (613)
363 PF07721 TPR_4: Tetratricopept 84.8 1.2 2.7E-05 26.0 2.8 21 203-223 4-24 (26)
364 PF14561 TPR_20: Tetratricopep 84.6 7.7 0.00017 30.9 8.1 46 41-90 7-52 (90)
365 PF07721 TPR_4: Tetratricopept 84.1 1.4 3E-05 25.8 2.8 22 322-343 3-24 (26)
366 KOG3364|consensus 84.0 4.1 8.8E-05 34.9 6.4 60 28-89 38-100 (149)
367 PF15015 NYD-SP12_N: Spermatog 83.9 32 0.00069 35.5 13.6 103 62-190 178-292 (569)
368 PRK10941 hypothetical protein; 83.7 7.6 0.00017 38.1 9.4 72 55-132 176-247 (269)
369 KOG2460|consensus 83.4 66 0.0014 34.2 24.1 57 37-93 121-185 (593)
370 PF05053 Menin: Menin; InterP 83.1 26 0.00056 37.5 13.2 98 272-370 269-368 (618)
371 KOG3824|consensus 82.5 2.1 4.6E-05 41.7 4.8 62 64-131 120-181 (472)
372 TIGR03504 FimV_Cterm FimV C-te 82.5 3.5 7.6E-05 27.8 4.5 39 324-366 3-41 (44)
373 TIGR02561 HrpB1_HrpK type III 82.1 13 0.00028 32.6 9.0 78 30-117 18-95 (153)
374 KOG2561|consensus 81.9 21 0.00046 36.8 11.6 48 319-366 266-313 (568)
375 PF09613 HrpB1_HrpK: Bacterial 81.7 38 0.00082 30.2 12.8 85 59-155 9-93 (160)
376 PF09670 Cas_Cas02710: CRISPR- 81.4 72 0.0016 33.2 18.7 67 60-130 131-199 (379)
377 KOG3364|consensus 80.7 17 0.00036 31.3 8.9 68 240-311 32-102 (149)
378 COG5107 RNA14 Pre-mRNA 3'-end 80.6 78 0.0017 33.1 22.6 217 96-350 298-532 (660)
379 PRK13184 pknD serine/threonine 80.0 1.3E+02 0.0028 35.2 23.3 104 67-193 482-585 (932)
380 PF10255 Paf67: RNA polymerase 79.6 9.7 0.00021 39.5 8.8 72 20-92 120-196 (404)
381 PF10255 Paf67: RNA polymerase 79.0 16 0.00034 38.0 10.1 72 142-234 124-198 (404)
382 COG2178 Predicted RNA-binding 78.4 27 0.00059 32.0 10.1 62 243-304 32-93 (204)
383 KOG1310|consensus 78.3 8.2 0.00018 40.7 7.6 93 29-131 381-476 (758)
384 PRK10941 hypothetical protein; 77.2 15 0.00032 36.1 8.9 68 239-312 180-247 (269)
385 KOG4521|consensus 77.1 1.6E+02 0.0035 34.7 18.7 31 100-130 920-950 (1480)
386 COG3914 Spy Predicted O-linked 76.7 82 0.0018 34.1 14.5 131 34-192 43-174 (620)
387 PF05053 Menin: Menin; InterP 76.2 36 0.00078 36.5 11.7 89 184-273 261-351 (618)
388 PF11207 DUF2989: Protein of u 75.9 15 0.00033 34.0 7.9 55 62-119 143-197 (203)
389 PRK14707 hypothetical protein; 75.8 2.3E+02 0.0051 35.9 21.1 269 65-353 794-1074(2710)
390 COG5091 SGT1 Suppressor of G2 73.8 9.6 0.00021 36.5 6.2 75 176-250 55-129 (368)
391 COG4976 Predicted methyltransf 73.7 5 0.00011 37.7 4.3 55 31-89 4-58 (287)
392 PF11207 DUF2989: Protein of u 73.1 15 0.00032 34.0 7.2 51 31-81 149-199 (203)
393 TIGR03504 FimV_Cterm FimV C-te 72.3 7.2 0.00016 26.3 3.7 25 244-268 3-27 (44)
394 PF04840 Vps16_C: Vps16, C-ter 71.7 1.2E+02 0.0026 30.7 25.2 101 210-345 187-287 (319)
395 KOG3024|consensus 71.6 1.1E+02 0.0023 30.1 12.7 133 211-343 17-150 (312)
396 TIGR02561 HrpB1_HrpK type III 71.3 26 0.00057 30.7 7.8 82 62-155 12-93 (153)
397 COG4649 Uncharacterized protei 70.4 84 0.0018 28.5 14.8 136 24-188 60-195 (221)
398 PF10373 EST1_DNA_bind: Est1 D 69.7 13 0.00028 36.6 6.7 62 41-112 1-62 (278)
399 COG4976 Predicted methyltransf 69.4 5.3 0.00011 37.5 3.4 58 69-132 4-61 (287)
400 KOG1258|consensus 69.4 1.7E+02 0.0038 31.7 32.1 125 239-380 296-420 (577)
401 COG3947 Response regulator con 69.3 32 0.0007 33.7 8.7 65 61-131 280-344 (361)
402 PF10373 EST1_DNA_bind: Est1 D 68.9 12 0.00026 36.8 6.3 62 299-372 1-62 (278)
403 PRK14707 hypothetical protein; 68.3 3.4E+02 0.0074 34.7 22.3 273 64-356 835-1119(2710)
404 cd02682 MIT_AAA_Arch MIT: doma 67.9 38 0.00082 25.9 7.2 31 21-51 5-35 (75)
405 PF14561 TPR_20: Tetratricopep 67.4 28 0.00061 27.7 6.9 66 80-155 8-73 (90)
406 COG5091 SGT1 Suppressor of G2 67.4 16 0.00034 35.1 6.2 85 294-378 53-137 (368)
407 PRK15180 Vi polysaccharide bio 67.1 34 0.00073 35.8 8.9 93 24-126 291-383 (831)
408 KOG1953|consensus 67.1 2.2E+02 0.0048 33.0 15.6 137 237-373 436-615 (1235)
409 COG3014 Uncharacterized protei 65.8 1.6E+02 0.0034 29.8 17.1 50 41-93 40-91 (449)
410 KOG0530|consensus 65.8 1.4E+02 0.0029 29.1 16.5 173 32-252 53-233 (318)
411 COG3629 DnrI DNA-binding trans 65.2 36 0.00079 33.5 8.5 65 59-129 152-216 (280)
412 COG3629 DnrI DNA-binding trans 65.2 43 0.00094 32.9 9.0 58 28-89 159-216 (280)
413 KOG0276|consensus 65.0 50 0.0011 35.7 9.8 25 103-127 669-693 (794)
414 PF08311 Mad3_BUB1_I: Mad3/BUB 64.4 65 0.0014 27.5 9.1 84 214-307 40-126 (126)
415 PF12309 KBP_C: KIF-1 binding 64.2 1.8E+02 0.004 30.1 18.0 160 74-233 138-342 (371)
416 PF08311 Mad3_BUB1_I: Mad3/BUB 63.4 85 0.0018 26.8 9.6 84 254-347 40-126 (126)
417 cd09241 BRO1_ScRim20-like Prot 62.3 1.7E+02 0.0038 30.0 13.4 18 138-155 104-121 (355)
418 COG2178 Predicted RNA-binding 61.9 1.3E+02 0.0029 27.7 11.4 63 202-264 31-93 (204)
419 COG3947 Response regulator con 61.4 1.1E+02 0.0024 30.1 10.7 64 100-189 279-342 (361)
420 cd02680 MIT_calpain7_2 MIT: do 60.8 73 0.0016 24.4 7.6 25 288-312 14-38 (75)
421 KOG1914|consensus 60.7 2.5E+02 0.0053 30.4 30.2 174 141-349 287-464 (656)
422 PHA02537 M terminase endonucle 60.6 1.1E+02 0.0023 29.3 10.5 105 32-137 93-215 (230)
423 PF03097 BRO1: BRO1-like domai 58.9 1.1E+02 0.0024 31.7 11.6 44 138-192 105-148 (377)
424 cd09034 BRO1_Alix_like Protein 57.5 2.3E+02 0.0049 28.9 13.8 18 138-155 109-126 (345)
425 PRK15180 Vi polysaccharide bio 56.9 33 0.00071 35.9 6.7 51 213-269 302-352 (831)
426 cd02681 MIT_calpain7_1 MIT: do 56.0 27 0.00058 26.8 4.6 28 23-50 7-34 (76)
427 KOG4521|consensus 55.2 4.3E+02 0.0093 31.5 23.0 151 178-357 981-1140(1480)
428 PHA02537 M terminase endonucle 55.2 1E+02 0.0023 29.3 9.4 111 250-361 93-219 (230)
429 PF04212 MIT: MIT (microtubule 55.1 30 0.00065 25.8 4.8 28 23-50 6-33 (69)
430 cd02680 MIT_calpain7_2 MIT: do 54.9 95 0.0021 23.8 9.5 20 73-92 19-38 (75)
431 smart00101 14_3_3 14-3-3 homol 54.1 2.1E+02 0.0046 27.6 22.8 59 64-125 5-64 (244)
432 cd02683 MIT_1 MIT: domain cont 53.9 99 0.0022 23.7 7.8 31 21-51 5-35 (77)
433 cd09239 BRO1_HD-PTP_like Prote 53.3 2.8E+02 0.006 28.7 13.1 18 138-155 112-129 (361)
434 PF12854 PPR_1: PPR repeat 52.4 32 0.00069 21.5 3.9 23 242-264 9-31 (34)
435 cd02682 MIT_AAA_Arch MIT: doma 52.2 1.1E+02 0.0023 23.5 7.8 34 280-313 6-39 (75)
436 KOG1310|consensus 52.1 70 0.0015 34.1 8.2 89 67-187 381-472 (758)
437 KOG2280|consensus 52.1 3.9E+02 0.0085 30.1 18.7 103 209-345 693-795 (829)
438 PRK12798 chemotaxis protein; R 51.8 3E+02 0.0066 28.7 20.4 206 66-308 118-323 (421)
439 PF07720 TPR_3: Tetratricopept 50.9 55 0.0012 20.9 4.8 23 102-124 3-25 (36)
440 PF07720 TPR_3: Tetratricopept 50.7 56 0.0012 20.9 4.8 22 282-303 3-24 (36)
441 PF12854 PPR_1: PPR repeat 50.4 37 0.0008 21.2 3.9 26 200-225 7-32 (34)
442 cd09242 BRO1_ScBro1_like Prote 49.6 2.2E+02 0.0048 29.2 11.7 38 236-273 240-277 (348)
443 cd09034 BRO1_Alix_like Protein 49.4 3E+02 0.0065 28.0 13.8 36 280-315 251-286 (345)
444 KOG0128|consensus 49.2 4.5E+02 0.0098 30.0 22.2 158 42-229 99-260 (881)
445 KOG2063|consensus 49.0 3.2E+02 0.007 31.7 13.5 99 250-348 601-712 (877)
446 KOG2422|consensus 48.8 3.9E+02 0.0085 29.1 17.5 170 174-350 252-449 (665)
447 cd09242 BRO1_ScBro1_like Prote 48.7 2E+02 0.0044 29.4 11.3 43 138-191 105-147 (348)
448 cd02679 MIT_spastin MIT: domai 48.4 49 0.0011 25.6 5.0 28 326-353 14-41 (79)
449 PF06783 UPF0239: Uncharacteri 47.5 14 0.0003 28.6 1.9 16 562-577 9-24 (85)
450 PF12309 KBP_C: KIF-1 binding 46.8 3.5E+02 0.0076 28.0 29.2 174 167-355 138-344 (371)
451 KOG2396|consensus 46.7 2.2E+02 0.0047 30.4 10.7 83 40-132 89-172 (568)
452 PF04212 MIT: MIT (microtubule 45.0 80 0.0017 23.4 5.8 25 207-231 12-36 (69)
453 TIGR02710 CRISPR-associated pr 44.5 3.8E+02 0.0083 27.8 15.6 58 28-85 136-196 (380)
454 cd09240 BRO1_Alix Protein-inte 44.4 3.7E+02 0.008 27.5 13.0 36 280-315 255-290 (346)
455 KOG4151|consensus 44.2 46 0.00099 37.2 5.9 95 22-122 53-149 (748)
456 KOG2422|consensus 44.0 4.6E+02 0.01 28.6 16.1 98 34-131 250-373 (665)
457 PF01535 PPR: PPR repeat; Int 43.9 37 0.00081 19.9 3.2 24 203-226 3-26 (31)
458 cd02679 MIT_spastin MIT: domai 43.5 73 0.0016 24.7 5.3 23 210-232 18-40 (79)
459 PF03745 DUF309: Domain of unk 43.3 1.3E+02 0.0028 22.0 6.5 57 26-82 3-61 (62)
460 cd02681 MIT_calpain7_1 MIT: do 42.6 1.5E+02 0.0033 22.7 7.8 30 281-310 7-36 (76)
461 cd09243 BRO1_Brox_like Protein 42.4 4E+02 0.0086 27.4 16.0 17 138-154 107-123 (353)
462 PF03097 BRO1: BRO1-like domai 41.5 2.8E+02 0.006 28.7 11.3 36 280-315 239-274 (377)
463 COG5107 RNA14 Pre-mRNA 3'-end 41.5 4.6E+02 0.0099 27.8 16.7 92 210-311 442-533 (660)
464 cd09241 BRO1_ScRim20-like Prot 41.4 3.6E+02 0.0079 27.7 11.8 34 280-313 237-270 (355)
465 TIGR00756 PPR pentatricopeptid 39.6 63 0.0014 19.3 3.9 25 203-227 3-27 (35)
466 PF07163 Pex26: Pex26 protein; 39.1 3.9E+02 0.0085 26.4 11.7 123 176-303 51-181 (309)
467 KOG0889|consensus 39.1 1.2E+03 0.026 31.9 17.6 163 20-207 2734-2901(3550)
468 cd09239 BRO1_HD-PTP_like Prote 38.9 4.6E+02 0.0099 27.1 13.2 34 280-313 252-285 (361)
469 cd02656 MIT MIT: domain contai 38.7 70 0.0015 24.2 4.7 27 24-50 8-34 (75)
470 cd02678 MIT_VPS4 MIT: domain c 38.7 1.7E+02 0.0038 22.1 7.8 30 22-51 6-35 (75)
471 cd02683 MIT_1 MIT: domain cont 38.4 82 0.0018 24.2 4.9 28 104-131 10-37 (77)
472 COG2912 Uncharacterized conser 38.1 1.2E+02 0.0027 29.5 7.2 72 55-132 176-247 (269)
473 KOG0128|consensus 37.9 6.7E+02 0.015 28.7 22.4 224 96-345 109-337 (881)
474 cd09240 BRO1_Alix Protein-inte 37.8 4.6E+02 0.01 26.8 14.8 33 322-354 257-289 (346)
475 smart00745 MIT Microtubule Int 37.7 1.8E+02 0.0039 22.0 8.0 30 22-51 8-37 (77)
476 PF09205 DUF1955: Domain of un 37.0 2.8E+02 0.0061 24.1 8.2 55 31-89 95-149 (161)
477 KOG0546|consensus 36.8 34 0.00075 34.4 3.2 97 29-131 229-340 (372)
478 PF03635 Vps35: Vacuolar prote 36.3 7.3E+02 0.016 28.6 18.4 172 178-349 569-757 (762)
479 KOG2034|consensus 36.1 7.4E+02 0.016 28.6 22.7 53 30-89 366-418 (911)
480 PF10938 YfdX: YfdX protein; 35.9 3.1E+02 0.0068 24.3 9.7 69 280-348 75-145 (155)
481 KOG0546|consensus 35.9 34 0.00074 34.5 3.1 104 203-312 225-341 (372)
482 cd08977 SusD starch binding ou 35.8 3.2E+02 0.007 27.9 10.7 91 138-228 97-209 (359)
483 PF02064 MAS20: MAS20 protein 35.8 1.1E+02 0.0024 25.9 5.7 34 22-55 63-96 (121)
484 PF10932 DUF2783: Protein of u 35.7 36 0.00079 24.5 2.3 23 534-556 8-30 (60)
485 smart00386 HAT HAT (Half-A-TPR 35.6 94 0.002 18.2 4.2 22 36-57 1-22 (33)
486 PF13041 PPR_2: PPR repeat fam 35.3 87 0.0019 21.2 4.4 27 202-228 5-31 (50)
487 PF13041 PPR_2: PPR repeat fam 34.7 89 0.0019 21.2 4.3 27 242-268 5-31 (50)
488 PF14863 Alkyl_sulf_dimr: Alky 34.3 1.3E+02 0.0029 26.2 6.2 46 25-74 73-118 (141)
489 KOG2063|consensus 34.1 8.2E+02 0.018 28.6 14.3 28 241-268 685-712 (877)
490 KOG4563|consensus 34.0 1.4E+02 0.003 30.5 6.8 62 19-80 38-103 (400)
491 TIGR03362 VI_chp_7 type VI sec 33.9 5E+02 0.011 26.0 15.1 76 287-365 220-295 (301)
492 cd09246 BRO1_Alix_like_1 Prote 33.6 5.4E+02 0.012 26.4 14.1 18 138-155 109-126 (353)
493 smart00745 MIT Microtubule Int 33.3 1.3E+02 0.0028 22.8 5.4 27 105-131 13-39 (77)
494 PF09797 NatB_MDM20: N-acetylt 33.2 5.5E+02 0.012 26.3 12.7 46 36-85 197-242 (365)
495 KOG0276|consensus 32.9 1.2E+02 0.0027 33.0 6.6 26 283-308 669-694 (794)
496 PF13812 PPR_3: Pentatricopept 32.0 1.1E+02 0.0025 18.2 4.2 27 62-88 3-29 (34)
497 PF07163 Pex26: Pex26 protein; 31.2 5.3E+02 0.011 25.5 12.6 130 209-343 44-181 (309)
498 KOG1938|consensus 31.2 2.9E+02 0.0062 32.0 9.5 60 247-307 323-382 (960)
499 cd02684 MIT_2 MIT: domain cont 31.2 2.4E+02 0.0052 21.5 7.6 30 22-51 6-35 (75)
500 smart00671 SEL1 Sel1-like repe 30.9 89 0.0019 19.1 3.6 13 295-307 20-32 (36)
No 1
>KOG1130|consensus
Probab=100.00 E-value=3.8e-91 Score=665.92 Aligned_cols=563 Identities=55% Similarity=0.860 Sum_probs=492.9
Q ss_pred CcchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q psy10738 16 ADGGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMED 95 (609)
Q Consensus 16 ~~~a~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d 95 (609)
+.+..+|++++++|+.+|+.|++...+.+|+.|++.+++|..++..+|.+||++|+++++|++|++|...-+.+++.++|
T Consensus 11 ~~q~~SCleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgd 90 (639)
T KOG1130|consen 11 YMQDRSCLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGD 90 (639)
T ss_pred hhhhhHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc
Confidence 44566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHh
Q psy10738 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVC 175 (609)
Q Consensus 96 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 175 (609)
..+.+++..+||+++..+|.|++|+.++.+.+.++++++|....+++++++|++|...|+..+.....+.+.+++++...
T Consensus 91 klGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~a 170 (639)
T KOG1130|consen 91 KLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSA 170 (639)
T ss_pred hhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888877889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCC
Q psy10738 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGE 255 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 255 (609)
++.|.++|...+++.+..+|....++++.+||+.|+.+|+|+.|+.+.+..+.+++++++.....+++.++|++|+.+|+
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCC
Q psy10738 256 YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGN 335 (609)
Q Consensus 256 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~ 335 (609)
++.|+++|+.++.++.++++....+..++.||+.|....++++||.|+.+.+.|+++++++.+..+++|.||..|..+|.
T Consensus 251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCCCchhhhhhhccc-CCCCCCCCCCcchhhhccccc
Q psy10738 336 HEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLSPDSLQLINSYAN-ANQPSPGVRRYNRVRRSSMEQ 414 (609)
Q Consensus 336 ~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 414 (609)
+++|+.+.++++++..+++++.++.+++.+|.++...+|.++.-..+ ....+++... ...+..+. .++.-+|++|++
T Consensus 331 h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds~~~~-te~~i~s~a~~~~as~ng~-~~~~grR~sme~ 408 (639)
T KOG1130|consen 331 HRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDSLVDD-TELIIDSSADPAPASINGV-HPKLGRRESMET 408 (639)
T ss_pred HHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcccCCc-HHHHhhccCCCCCcccccc-ccchhhHHHHHH
Confidence 99999999999999999999999999999999999999998774443 3333333322 22222333 455568999999
Q ss_pred ccccccCCCccCCCCCCCCCCCCCCCCccchHHHHHhhhccCCCcccccCcccc-cCCCccccc----------------
Q psy10738 415 LDLIKLTPENKGKQSGSSNSSELSKCDEEESFFELLSRFQSERMDDQRCSLSAR-QSENKENLQ---------------- 477 (609)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ll~~~q~~rmddqr~~~~~~-~~~~~~~~~---------------- 477 (609)
++++|.||++...-+..+-.........++.|||+|+++||+||||||||.... |....+...
T Consensus 409 ~~l~k~tpdk~~n~~ee~La~q~~~kak~~~ff~ml~rlqsKrm~dQr~s~sv~~pn~~~~v~~~~t~~~~~~~l~s~~q 488 (639)
T KOG1130|consen 409 YFLKKNTPDKPVNTPEEPLAEQRYEKAKPSAFFDMLARLQSKRMNDQRVSASVLSPNLDFRVRQVDTEPDNSSTLGSEVQ 488 (639)
T ss_pred HHHHhcCCCCccCCchhhhhhhhhhhcCchHHHHHHHHHhhccccchhccccccCcCccccccccccCCCcchhhHHHHH
Confidence 999999999865332211111122345668899999999999999999998865 211110000
Q ss_pred ---------------ccCCCCCCC---CCC-CCCCCCCCCCCCCchHHHHHHhhhcccchhhhhcCCCCCCC---CCCCC
Q psy10738 478 ---------------RITNTKKSQ---PSA-PRATTIPAHTPGDDDLLDMIVGLQSKRMDEQRAALPHLADR---ENAIP 535 (609)
Q Consensus 478 ---------------~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~l~~~Q~~R~~~qr~~~~~~~~~---~~~~~ 535 (609)
.++..|..+ +.+ ..-+..+...|.+|+|+||||+|||+||||||+.+|++.+. +..++
T Consensus 489 ~~l~~d~~~~~~~k~~~~a~p~~~~~gp~~ll~~st~p~~~p~~d~fld~Lmr~Qg~RLdeQRSeLP~~~~tm~~~~ee~ 568 (639)
T KOG1130|consen 489 IDLLLDAQGRRMDKQRAPALPGLNPNGPIILLRLSTDPGNEPLDDHFLDWLMRVQGERLDEQRSELPPIKPTMTNGQEEV 568 (639)
T ss_pred HHHhhccccCccccCCCCCCCCCCCCCCceeeeccCCCCCCCChHHHHHHHHHhhhhhhhhhhhcCCCCCCccCCccccC
Confidence 000011111 111 11223333468889999999999999999999999987654 77889
Q ss_pred CchHHHHHHHhhhcchhhhcccCC---CCCCCCCchhHHHHHHHhhccccchhcccCC
Q psy10738 536 DDGFLDMLIRCQGARLEDQRSHLP---QEGSTVPDEDFFSLITRLQSGRMEDQRATVP 590 (609)
Q Consensus 536 ~~~~~~~~~~~q~~r~~~qr~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (609)
|.|||+++++| +|| .+|||||||||||||||||+|||||||+.+|
T Consensus 569 d~~~~d~~v~~----------ap~~~t~~g~tvpdeDffslimr~Q~gRmedQRa~lp 616 (639)
T KOG1130|consen 569 DKDFFDILVKC----------APPPKTEEGPTVPDEDFFSLIMRMQAGRMEDQRAHLP 616 (639)
T ss_pred Cchhhhhhccc----------CCCcccCCCCCCCchHHHHHHHHHhhcchhhhhhcCC
Confidence 99999999999 444 6899999999999999999999999999999
No 2
>KOG1130|consensus
Probab=100.00 E-value=2.1e-53 Score=407.02 Aligned_cols=510 Identities=26% Similarity=0.373 Sum_probs=394.9
Q ss_pred hhHhhhcCCCcchhHHHHHHHH----------------HHHHHhcCChHHHHHHHHHHHHhC--CcchhHHHHHHHHHHH
Q psy10738 7 SSSDSQSGGADGGNMCLELALE----------------GERLCKAGDCRAGVAFFQAAIQAG--TDDLRTLSAIYSQLGN 68 (609)
Q Consensus 7 g~~~~~~g~~~~a~~~~~l~~~----------------g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~a~~~~~lg~ 68 (609)
|.-+.+.|+.+..+.++..+++ |..|+..++|.+|+++-..-+.+. -+|....+..--+||+
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 6778889999988888876665 777888888888888766554432 2344444566788999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHH
Q psy10738 69 AYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGK--------------------YDEAMVCCKRHLE 128 (609)
Q Consensus 69 ~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~--------------------~~~A~~~~~~al~ 128 (609)
.+...|.|++|+.++.+-+.++++++|......+++++|++|...|+ ++.|.++|..-++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999886 6789999999999
Q ss_pred HHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q psy10738 129 ISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGN 208 (609)
Q Consensus 129 l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 208 (609)
+...++|.....+++.+||+.|+.+|+ |+.|+.+.+.-+.+.++.+|....-+++.|+|+
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGd--------------------f~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN 243 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGD--------------------FDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGN 243 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeecc--------------------HHHHHHHHHHHHHHHHHhhhHHHHHHhhcccch
Confidence 999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q psy10738 209 TYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGN 288 (609)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 288 (609)
+|..+|+++.|+++|+.++.++.+.++....+...+.||+.|....++++|+.|+.+-+.+++++++......+|+.||.
T Consensus 244 ~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgn 323 (639)
T KOG1130|consen 244 CHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGN 323 (639)
T ss_pred hhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-----HHHcC-CCchHHHH
Q psy10738 289 TYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI-----SKQLG-DPLGQVTA 362 (609)
Q Consensus 289 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l-----~~~~~-~~~~~~~a 362 (609)
.|...|..++|+.+.++++++..++++..+...+..+|...-..+|..+.-..-.+..+.- ...++ ..+... -
T Consensus 324 a~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds~~~~te~~i~s~a~~~~as~ng~~~~~g-r 402 (639)
T KOG1130|consen 324 AFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDSLVDDTELIIDSSADPAPASINGVHPKLG-R 402 (639)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcccCCcHHHHhhccCCCCCccccccccchh-h
Confidence 9999999999999999999999999999999999999999999998765422222221111 01111 011111 1
Q ss_pred HHHHHHHHHHcCCCCCCCCCchhhhhhhcccCCCCCCCCCCcchhhhcccccccc-cccC-CCccCCC------------
Q psy10738 363 QMNVTDLRKALGMSTNDLSPDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLDL-IKLT-PENKGKQ------------ 428 (609)
Q Consensus 363 ~~~la~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~------------ 428 (609)
+..+-.......-++.-..|....+.........++..++...+.+.+.|...++ .+.. |...++-
T Consensus 403 R~sme~~~l~k~tpdk~~n~~ee~La~q~~~kak~~~ff~ml~rlqsKrm~dQr~s~sv~~pn~~~~v~~~~t~~~~~~~ 482 (639)
T KOG1130|consen 403 RESMETYFLKKNTPDKPVNTPEEPLAEQRYEKAKPSAFFDMLARLQSKRMNDQRVSASVLSPNLDFRVRQVDTEPDNSST 482 (639)
T ss_pred HHHHHHHHHHhcCCCCccCCchhhhhhhhhhhcCchHHHHHHHHHhhccccchhccccccCcCccccccccccCCCcchh
Confidence 1112222222223344343444444434333333333444566777777777666 2322 2221000
Q ss_pred -----------------------CCCCCCC---C--------C-CCCCccchHHHHHhhhccCCCcccccCcccccCCCc
Q psy10738 429 -----------------------SGSSNSS---E--------L-SKCDEEESFFELLSRFQSERMDDQRCSLSARQSENK 473 (609)
Q Consensus 429 -----------------------~~~~~~~---~--------~-~~~~~~~~f~~ll~~~q~~rmddqr~~~~~~~~~~~ 473 (609)
+..+... + . ...+.+|+|+|+|.|+||+|+||||..|+...
T Consensus 483 l~s~~q~~l~~d~~~~~~~k~~~~a~p~~~~~gp~~ll~~st~p~~~p~~d~fld~Lmr~Qg~RLdeQRSeLP~~~---- 558 (639)
T KOG1130|consen 483 LGSEVQIDLLLDAQGRRMDKQRAPALPGLNPNGPIILLRLSTDPGNEPLDDHFLDWLMRVQGERLDEQRSELPPIK---- 558 (639)
T ss_pred hHHHHHHHHhhccccCccccCCCCCCCCCCCCCCceeeeccCCCCCCCChHHHHHHHHHhhhhhhhhhhhcCCCCC----
Confidence 0000000 0 0 12457789999999999999999996665110
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHhhhcccchhhhhcCCCCCCCCCCCCCchHHHHHHHhhhcchhh
Q psy10738 474 ENLQRITNTKKSQPSAPRATTIPAHTPGDDDLLDMIVGLQSKRMDEQRAALPHLADRENAIPDDGFLDMLIRCQGARLED 553 (609)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~R~~~qr~~~~~~~~~~~~~~~~~~~~~~~~~q~~r~~~ 553 (609)
...+....+++++|||++++| .+|+-...+|++||||||++|||+|++||||
T Consensus 559 ------------------~tm~~~~ee~d~~~~d~~v~~----------ap~~~t~~g~tvpdeDffslimr~Q~gRmed 610 (639)
T KOG1130|consen 559 ------------------PTMTNGQEEVDKDFFDILVKC----------APPPKTEEGPTVPDEDFFSLIMRMQAGRMED 610 (639)
T ss_pred ------------------CccCCccccCCchhhhhhccc----------CCCcccCCCCCCCchHHHHHHHHHhhcchhh
Confidence 112223357889999999999 3333336789999999999999999999999
Q ss_pred hcccCCCCCCCCCchhH
Q psy10738 554 QRSHLPQEGSTVPDEDF 570 (609)
Q Consensus 554 qr~~~~~~~~~~~~~~~ 570 (609)
||..+|. -||-.+.||
T Consensus 611 QRa~lp~-r~~n~n~d~ 626 (639)
T KOG1130|consen 611 QRAHLPN-RPTNKNTDF 626 (639)
T ss_pred hhhcCCC-CCCCCCccc
Confidence 9999994 344555666
No 3
>KOG4626|consensus
Probab=100.00 E-value=1.8e-33 Score=282.41 Aligned_cols=313 Identities=24% Similarity=0.278 Sum_probs=269.9
Q ss_pred hhhhhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHH
Q psy10738 3 VGNISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAY 70 (609)
Q Consensus 3 l~~Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~ 70 (609)
+.++|.++...|+...|..|+..+++ |..+-..|...+|..+|.+|++..|. .+.+|.+||.++
T Consensus 153 ~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~----fAiawsnLg~~f 228 (966)
T KOG4626|consen 153 YINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPC----FAIAWSNLGCVF 228 (966)
T ss_pred HhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCc----eeeeehhcchHH
Confidence 45566666666666666666655554 66666667777777777777776664 356788999999
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q psy10738 71 FYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVY 150 (609)
Q Consensus 71 ~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~ 150 (609)
...|+...|+.+|++|+++ +|....+|++||++|...+.|++|+.+|.+|+.+.+ ..+.++.++|.+|
T Consensus 229 ~~~Gei~~aiq~y~eAvkl------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp------n~A~a~gNla~iY 296 (966)
T KOG4626|consen 229 NAQGEIWLAIQHYEEAVKL------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP------NHAVAHGNLACIY 296 (966)
T ss_pred hhcchHHHHHHHHHHhhcC------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC------cchhhccceEEEE
Confidence 9999999999999999998 889999999999999999999999999999998877 7788999999999
Q ss_pred HHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 151 HAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIA 230 (609)
Q Consensus 151 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 230 (609)
+.+|. .+-|+..|++++++ .+....+|.|+|+.+...|+..+|..+|.+++.+.
T Consensus 297 yeqG~--------------------ldlAI~~Ykral~~------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 297 YEQGL--------------------LDLAIDTYKRALEL------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred ecccc--------------------HHHHHHHHHHHHhc------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 99999 99999999999988 55566799999999999999999999999999998
Q ss_pred HHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy10738 231 REFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 310 (609)
Q Consensus 231 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 310 (609)
+...+ +.+|||++|..+|.+++|...|++++++.+.. +.++.+||.+|..+|++++|+.+|++++.|.
T Consensus 351 p~had------am~NLgni~~E~~~~e~A~~ly~~al~v~p~~------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~ 418 (966)
T KOG4626|consen 351 PNHAD------AMNNLGNIYREQGKIEEATRLYLKALEVFPEF------AAAHNNLASIYKQQGNLDDAIMCYKEALRIK 418 (966)
T ss_pred CccHH------HHHHHHHHHHHhccchHHHHHHHHHHhhChhh------hhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 88777 89999999999999999999999999999885 8889999999999999999999999999987
Q ss_pred HHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 311 QQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 311 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
+. .+.++.++|..|..+|+...|+.+|.+|+.+. +..++|+.+||.+|+..|+...|+.
T Consensus 419 P~------fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n------Pt~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 419 PT------FADALSNMGNTYKEMGDVSAAIQCYTRAIQIN------PTFAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred ch------HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC------cHHHHHHhhHHHHhhccCCcHHHHH
Confidence 76 46699999999999999999999999999876 7888999999999999999877664
No 4
>KOG4626|consensus
Probab=100.00 E-value=8.9e-33 Score=277.43 Aligned_cols=314 Identities=24% Similarity=0.263 Sum_probs=289.9
Q ss_pred chhhhhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHH
Q psy10738 2 SVGNISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNA 69 (609)
Q Consensus 2 ~l~~Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~ 69 (609)
++.|+|.+|...|+.+.|+..|..+.+ |.++...|+.+.|..+|..|++++|.. .-+...+|+.
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l----~ca~s~lgnL 193 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDL----YCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcch----hhhhcchhHH
Confidence 467899999999999999988877665 778889999999999999999999875 3477889999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q psy10738 70 YFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNV 149 (609)
Q Consensus 70 ~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~ 149 (609)
+...|...+|..+|.+|++. .+..+.+|.+||-++...|+...|+.+|++|+.+.+ ....+|++||++
T Consensus 194 lka~Grl~ea~~cYlkAi~~------qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP------~f~dAYiNLGnV 261 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIET------QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP------NFLDAYINLGNV 261 (966)
T ss_pred HHhhcccchhHHHHHHHHhh------CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC------cchHHHhhHHHH
Confidence 99999999999999999998 788899999999999999999999999999999887 777899999999
Q ss_pred HHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 150 YHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKI 229 (609)
Q Consensus 150 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 229 (609)
|...+. |+.|+..|.+|+.+ .+..+.++.|+|.+|+.+|..+-|+..|++++++
T Consensus 262 ~ke~~~--------------------~d~Avs~Y~rAl~l------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~ 315 (966)
T KOG4626|consen 262 YKEARI--------------------FDRAVSCYLRALNL------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL 315 (966)
T ss_pred HHHHhc--------------------chHHHHHHHHHHhc------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc
Confidence 999999 99999999999988 7788899999999999999999999999999999
Q ss_pred HHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 230 AREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 309 (609)
Q Consensus 230 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 309 (609)
.+.+.+ +|.|+|+++-..|+..+|..+|.+++.+.+.. +.+.++||++|..+|.+++|..+|.+++++
T Consensus 316 ~P~F~~------Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h------adam~NLgni~~E~~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 316 QPNFPD------AYNNLANALKDKGSVTEAVDCYNKALRLCPNH------ADAMNNLGNIYREQGKIEEATRLYLKALEV 383 (966)
T ss_pred CCCchH------HHhHHHHHHHhccchHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 888887 99999999999999999999999999998874 889999999999999999999999999999
Q ss_pred HHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 310 AQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 310 ~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
.+. .+.++.+||.+|..+|++++|+.+|++|+.|. +..+.++.++|..|+.+|+...|+.
T Consensus 384 ~p~------~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~------P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 384 FPE------FAAAHNNLASIYKQQGNLDDAIMCYKEALRIK------PTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred Chh------hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC------chHHHHHHhcchHHHHhhhHHHHHH
Confidence 887 46699999999999999999999999999987 8889999999999999999887765
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=7.4e-25 Score=242.78 Aligned_cols=325 Identities=15% Similarity=0.083 Sum_probs=237.6
Q ss_pred hhhhhhHhhhcCCCcchhHHHHHHHH-----------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHH
Q psy10738 3 VGNISSSDSQSGGADGGNMCLELALE-----------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYF 71 (609)
Q Consensus 3 l~~Lg~~~~~~g~~~~a~~~~~l~~~-----------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~ 71 (609)
+..+|..+...|+++.|+.+|..++. |.++...|++++|+..+.++++++|++. .+++.+|.+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~----~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYS----KALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHH
Confidence 56789999999999999999987654 7889999999999999999999999874 48899999999
Q ss_pred HhCCHHHHHHHHHHHHHH--------------------------------------------------------------
Q psy10738 72 YLGDYQKAMQYHKQDLTL-------------------------------------------------------------- 89 (609)
Q Consensus 72 ~~g~~~~A~~~~~~al~~-------------------------------------------------------------- 89 (609)
.+|++++|+..+..+...
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999998765443210
Q ss_pred -------------------------------HHHc----CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q psy10738 90 -------------------------------ARNM----EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLN 134 (609)
Q Consensus 90 -------------------------------~~~~----~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 134 (609)
+... ...+..+.++..+|.++..+|++++|+.++++++++.+
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P--- 362 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP--- 362 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---
Confidence 0000 01233445667777777777777788777777777655
Q ss_pred CcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcC
Q psy10738 135 DKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLG 214 (609)
Q Consensus 135 d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g 214 (609)
....++..+|.++...|+ +++|+.++++++++ .+....++.++|.++...|
T Consensus 363 ---~~~~~~~~la~~~~~~g~--------------------~~eA~~~~~~al~~------~p~~~~~~~~lg~~~~~~g 413 (615)
T TIGR00990 363 ---RVTQSYIKRASMNLELGD--------------------PDKAEEDFDKALKL------NSEDPDIYYHRAQLHFIKG 413 (615)
T ss_pred ---CcHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcC
Confidence 445577777888877777 88888888877765 2333567778888888888
Q ss_pred CHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhC
Q psy10738 215 NFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR 294 (609)
Q Consensus 215 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 294 (609)
++++|+.+|++++.+.+... .++.++|.++..+|++++|+..|++++...+.. ..++..+|.++...|
T Consensus 414 ~~~~A~~~~~kal~l~P~~~------~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 414 EFAQAGKDYQKSIDLDPDFI------FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA------PDVYNYYGELLLDQN 481 (615)
T ss_pred CHHHHHHHHHHHHHcCccCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcc
Confidence 88888888888877755432 267778888888888888888888887765542 557777888888888
Q ss_pred CHHHHHHHHHHHHHHHHHhcchhhHHHHHHHH-HHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q psy10738 295 DYPTAIDYHLRHLIIAQQLMDRVGEGRACWSL-GNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKAL 373 (609)
Q Consensus 295 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~L-a~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~ 373 (609)
++++|+.+|++++.+.+...........++.. +.++...|++++|+.++++++.+. +....++..+|.++...
T Consensus 482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~------p~~~~a~~~la~~~~~~ 555 (615)
T TIGR00990 482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID------PECDIAVATMAQLLLQQ 555 (615)
T ss_pred CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHc
Confidence 88888888888887766533222222222233 333444688888888888888753 34455788899999999
Q ss_pred CCCCCCCC
Q psy10738 374 GMSTNDLS 381 (609)
Q Consensus 374 g~~~~al~ 381 (609)
|+..+|+.
T Consensus 556 g~~~eAi~ 563 (615)
T TIGR00990 556 GDVDEALK 563 (615)
T ss_pred cCHHHHHH
Confidence 99887765
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=5.7e-23 Score=227.74 Aligned_cols=301 Identities=16% Similarity=0.158 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
+..+...|..++..|+|++|+..|++++...|+ + ..|.++|.+|..+|++++|+..+.+++++ .+....
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~----~~~~n~a~~~~~l~~~~~Ai~~~~~al~l------~p~~~~ 195 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-P----VYYSNRAACHNALGDWEKVVEDTTAALEL------DPDYSK 195 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-h----HHHHHHHHHHHHhCCHHHHHHHHHHHHHc------CCCCHH
Confidence 345666799999999999999999999999985 2 37899999999999999999999999998 788899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------------------cCCc-------------------
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQ--------------------------LNDK------------------- 136 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~--------------------------~~d~------------------- 136 (609)
+++.+|.+|..+|++++|+..+..+..+... ....
T Consensus 196 a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 275 (615)
T TIGR00990 196 ALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKP 275 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCc
Confidence 9999999999999999999877654321100 0000
Q ss_pred ------------HHHHHHHHHHHHHHH---HcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHH
Q psy10738 137 ------------LSEGRALYNLGNVYH---AKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201 (609)
Q Consensus 137 ------------~~~~~~~~~lg~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 201 (609)
......+..+|..+. ..+. |++|+.+|++++... ...+..+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~--------------------y~~A~~~~~~al~~~---~~~~~~a~ 332 (615)
T TIGR00990 276 RPAGLEDSNELDEETGNGQLQLGLKSPESKADES--------------------YEEAARAFEKALDLG---KLGEKEAI 332 (615)
T ss_pred chhhhhcccccccccccchHHHHHHHHHhhhhhh--------------------HHHHHHHHHHHHhcC---CCChhhHH
Confidence 000001111221111 1234 777777777777642 11344556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQ 281 (609)
Q Consensus 202 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 281 (609)
++..+|.++..+|++++|+.++++++.+.+... .++..+|.++...|++++|+.+|++++.+.+.. ..
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~ 400 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELDPRVT------QSYIKRASMNLELGDPDKAEEDFDKALKLNSED------PD 400 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HH
Confidence 677777777777777777777777776654332 266677777777777777777777776654332 45
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHH
Q psy10738 282 ACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVT 361 (609)
Q Consensus 282 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 361 (609)
+++.+|.++...|++++|+.+|++++.+.+. ...++..+|.++..+|++++|+.++++++... +....
T Consensus 401 ~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------P~~~~ 468 (615)
T TIGR00990 401 IYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD------FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF------PEAPD 468 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCChH
Confidence 6677777777777777777777777766543 23356667777777777777777777776654 34456
Q ss_pred HHHHHHHHHHHcCCCCCCC
Q psy10738 362 AQMNVTDLRKALGMSTNDL 380 (609)
Q Consensus 362 a~~~la~l~~~~g~~~~al 380 (609)
++..+|.++...|+...|+
T Consensus 469 ~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 469 VYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HHHHHHHHHHHccCHHHHH
Confidence 6666777777777665553
No 7
>KOG1840|consensus
Probab=99.91 E-value=8.6e-21 Score=197.21 Aligned_cols=279 Identities=22% Similarity=0.251 Sum_probs=246.2
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--
Q psy10738 58 TLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM--EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL-- 133 (609)
Q Consensus 58 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~-- 133 (609)
....+...+|..|...|+|++|+..+++++....+. .+.+..+.....+|.+|..+++|.+|+..|++|+.+....
T Consensus 197 ~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 197 ERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 345667779999999999999999999999997544 2455666677789999999999999999999999999876
Q ss_pred CCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHH
Q psy10738 134 NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI--NDTAAQGRACGNLGNTYY 211 (609)
Q Consensus 134 ~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~~~ 211 (609)
.+.+..+.++.+||.+|...|+ |.+|..++++|++|.++. ...+..+..+.+++.++.
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GK--------------------f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~ 336 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGK--------------------FAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQ 336 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCC--------------------hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHH
Confidence 4567889999999999999999 999999999999999884 456778889999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHH
Q psy10738 212 LLGNFKQAIYYHQERLKIAREFG--DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD--RAVEAQACYSLG 287 (609)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la 287 (609)
.++++++|+.++++++++..... +....+..+.++|.+|..+|+|++|.++|++|+.+...... .......++.+|
T Consensus 337 ~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la 416 (508)
T KOG1840|consen 337 SMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLA 416 (508)
T ss_pred HhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHH
Confidence 99999999999999999988532 33467889999999999999999999999999999988754 667788999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCC
Q psy10738 288 NTYTLLRDYPTAIDYHLRHLIIAQQLMD-RVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDP 356 (609)
Q Consensus 288 ~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 356 (609)
..|...+++.+|...|.++..|.+..+. .+.....|.+||.+|..+|++++|+++.++++...+..+..
T Consensus 417 ~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~ 486 (508)
T KOG1840|consen 417 EAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGT 486 (508)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999976654 55788899999999999999999999999999887766543
No 8
>KOG1840|consensus
Probab=99.89 E-value=5.1e-20 Score=191.47 Aligned_cols=273 Identities=20% Similarity=0.265 Sum_probs=238.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhC----CcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CC
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAG----TDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM--ED 95 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~d 95 (609)
.......|..|..+|+|++|+..++.|++.- -.+...++.....+|.+|..+++|.+|+..|++|+.+.+.. .+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 3344447999999999999999999999871 12333456666779999999999999999999999998866 56
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhH
Q psy10738 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL--NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVK 173 (609)
Q Consensus 96 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~ 173 (609)
.+..+.++.+||..|...|+|++|..++++|+++.... ......+..+.+++.++..+++
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~------------------ 340 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNE------------------ 340 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc------------------
Confidence 88899999999999999999999999999999999873 3455778889999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHH
Q psy10738 174 VCLQEAIKYYEQNLALMKEI--NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD--KAAERRANSNLGNS 249 (609)
Q Consensus 174 ~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~ 249 (609)
+++|..++++++++.... .+++..+..+.++|.+|..+|+|.+|.++|++|+.+.+.... .......+.++|..
T Consensus 341 --~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~ 418 (508)
T KOG1840|consen 341 --YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEA 418 (508)
T ss_pred --hhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHH
Confidence 999999999999998854 445678999999999999999999999999999999988655 45667799999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q psy10738 250 HIFLGEYQAASEHYKRTLVLAQDLG-DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM 314 (609)
Q Consensus 250 ~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 314 (609)
|...+++.+|...|.++..+.+..+ +.+.....|.+||.+|..+|++++|+++.++++.......
T Consensus 419 ~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~ 484 (508)
T KOG1840|consen 419 YEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRL 484 (508)
T ss_pred HHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999997665 5557788999999999999999999999999998766643
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=6.3e-21 Score=224.95 Aligned_cols=338 Identities=17% Similarity=0.119 Sum_probs=238.3
Q ss_pred hhhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCCcchhH----------HHHH
Q psy10738 5 NISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRT----------LSAI 62 (609)
Q Consensus 5 ~Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~a~~ 62 (609)
.+|.++...|++++|+.++..++. |.++...|++++|+.+|+++++..|++... ....
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 346777777777777777765544 778888888888888888888877754321 1112
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcH-----
Q psy10738 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKL----- 137 (609)
Q Consensus 63 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~----- 137 (609)
...+|.++...|++++|+..|++++.+ .+....++..+|.++...|++++|+.+|++++++.+......
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQV------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN 427 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 334577777788888888888887777 555667777788888888888888888887776644211100
Q ss_pred -------------------------------HHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHH
Q psy10738 138 -------------------------------SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQN 186 (609)
Q Consensus 138 -------------------------------~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 186 (609)
.....+..+|.++...|+ +++|+..|+++
T Consensus 428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~--------------------~~eA~~~~~~A 487 (1157)
T PRK11447 428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK--------------------WAQAAELQRQR 487 (1157)
T ss_pred HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC--------------------HHHHHHHHHHH
Confidence 001233456777777887 88888888887
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChH-----------------------------
Q psy10738 187 LALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKA----------------------------- 237 (609)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------------------- 237 (609)
+++ .+....++..+|.+|...|++++|+..+++++...+......
T Consensus 488 l~~------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~ 561 (1157)
T PRK11447 488 LAL------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWN 561 (1157)
T ss_pred HHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcC
Confidence 776 233345677777778888888888777777766433211000
Q ss_pred ---------------------------------------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHH
Q psy10738 238 ---------------------------------------AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV 278 (609)
Q Consensus 238 ---------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 278 (609)
.....+..+|.++...|++++|+..|++++...+..
T Consensus 562 ~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~----- 636 (1157)
T PRK11447 562 SNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGN----- 636 (1157)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Confidence 001255678889999999999999999999876653
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCch
Q psy10738 279 EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLG 358 (609)
Q Consensus 279 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~ 358 (609)
..++..+|.+|...|++++|+..+++++...+. ...++..+|.++...|++++|..++++++...........
T Consensus 637 -~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~ 709 (1157)
T PRK11447 637 -ADARLGLIEVDIAQGDLAAARAQLAKLPATAND------SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSME 709 (1157)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchh
Confidence 668889999999999999999999987765332 3446778999999999999999999999887643332223
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCchhh
Q psy10738 359 QVTAQMNVTDLRKALGMSTNDLSPDSLQ 386 (609)
Q Consensus 359 ~~~a~~~la~l~~~~g~~~~al~~~~~~ 386 (609)
...++..+|.++...|++..|+......
T Consensus 710 ~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 710 SALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566777899999999988887644443
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=1.7e-20 Score=207.58 Aligned_cols=324 Identities=14% Similarity=0.039 Sum_probs=227.6
Q ss_pred hhHhhhcCCCcchhHHHHHHH------------HHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhC
Q psy10738 7 SSSDSQSGGADGGNMCLELAL------------EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLG 74 (609)
Q Consensus 7 g~~~~~~g~~~~a~~~~~l~~------------~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g 74 (609)
+....+.|+...|...+...+ .|......|++++|+..|++++..+|++.. ++..+|.++...|
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~----a~~~la~~l~~~g 124 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPE----DVLLVASVLLKSK 124 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHcC
Confidence 444556677776666654433 266667778888888888888887777644 6677777878888
Q ss_pred CHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc------------------
Q psy10738 75 DYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDK------------------ 136 (609)
Q Consensus 75 ~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~------------------ 136 (609)
++++|+..+++++.+ .+....++..+|.++...|++++|+..+.+++...+.....
T Consensus 125 ~~~~Ai~~l~~Al~l------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~ 198 (656)
T PRK15174 125 QYATVADLAEQAWLA------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHD 198 (656)
T ss_pred CHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888887777 56666677777777777777777777777655443211000
Q ss_pred ----------HHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy10738 137 ----------LSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNL 206 (609)
Q Consensus 137 ----------~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 206 (609)
.........++.++...|+ +++|+..+.+++.. .+....++.++
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~--------------------~~eA~~~~~~al~~------~p~~~~~~~~L 252 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGK--------------------YQEAIQTGESALAR------GLDGAALRRSL 252 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHhc------CCCCHHHHHHH
Confidence 0000112234455555666 77777777777765 23345677888
Q ss_pred HHHHHHcCCHHH----HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHH
Q psy10738 207 GNTYYLLGNFKQ----AIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQA 282 (609)
Q Consensus 207 g~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 282 (609)
|.++...|++++ |+.++++++.+.+... .++.++|.++...|++++|+.++++++.+.+.. ..+
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~------~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~------~~a 320 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQFNSDNV------RIVTLYADALIRTGQNEKAIPLLQQSLATHPDL------PYV 320 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHH
Confidence 888988998885 7888888888765432 378888999999999999999999988876543 556
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHH
Q psy10738 283 CYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTA 362 (609)
Q Consensus 283 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a 362 (609)
+..+|.++...|++++|+..|++++...+. ....+..+|.++...|++++|+.+|++++++...... .....+
T Consensus 321 ~~~La~~l~~~G~~~eA~~~l~~al~~~P~------~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~-~~~~ea 393 (656)
T PRK15174 321 RAMYARALRQVGQYTAASDEFVQLAREKGV------TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP-QSFEEG 393 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch-hhHHHH
Confidence 778899999999999999999888876443 2235556788888999999999999999888665442 344567
Q ss_pred HHHHHHHHHHcCCCCCCCCCchh
Q psy10738 363 QMNVTDLRKALGMSTNDLSPDSL 385 (609)
Q Consensus 363 ~~~la~l~~~~g~~~~al~~~~~ 385 (609)
...+.+.+...+.+.....|...
T Consensus 394 ~~~~~~~~~~~~~~~~~~~W~~~ 416 (656)
T PRK15174 394 LLALDGQISAVNLPPERLDWAWE 416 (656)
T ss_pred HHHHHHHHHhcCCccchhhHHHH
Confidence 88888888888877655444444
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=7e-21 Score=210.71 Aligned_cols=297 Identities=10% Similarity=0.024 Sum_probs=235.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
+..-+..+...|++++|...++.++...|++.. +++.+|.+....|++++|+..+++++.. .|....++.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~----~l~~l~~~~l~~g~~~~A~~~l~~~l~~------~P~~~~a~~ 114 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRD----LLRRWVISPLASSQPDAVLQVVNKLLAV------NVCQPEDVL 114 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh----HHHHHhhhHhhcCCHHHHHHHHHHHHHh------CCCChHHHH
Confidence 444477889999999999999999999998855 7899999999999999999999999999 788889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYE 184 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 184 (609)
.+|.++...|++++|+..|++++.+.+ ....++..+|.++...|+ +++|+..+.
T Consensus 115 ~la~~l~~~g~~~~Ai~~l~~Al~l~P------~~~~a~~~la~~l~~~g~--------------------~~eA~~~~~ 168 (656)
T PRK15174 115 LVASVLLKSKQYATVADLAEQAWLAFS------GNSQIFALHLRTLVLMDK--------------------ELQAISLAR 168 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHCCC--------------------hHHHHHHHH
Confidence 999999999999999999999999866 445678888888888888 666666555
Q ss_pred HHHHHHHH-------------hCC---------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCh
Q psy10738 185 QNLALMKE-------------IND---------------TAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDK 236 (609)
Q Consensus 185 ~al~~~~~-------------~~~---------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 236 (609)
+++..... .++ +.........++.++...|++++|+..+++++...+..
T Consensus 169 ~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~--- 245 (656)
T PRK15174 169 TQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG--- 245 (656)
T ss_pred HHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---
Confidence 44332100 000 00011123445677777888888888888887764332
Q ss_pred HHHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 237 AAERRANSNLGNSHIFLGEYQA----ASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 237 ~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 312 (609)
..++.++|.++...|++++ |+.+|++++.+.+.. ..++..+|.++...|++++|+.++++++.+.+.
T Consensus 246 ---~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~------~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~ 316 (656)
T PRK15174 246 ---AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN------VRIVTLYADALIRTGQNEKAIPLLQQSLATHPD 316 (656)
T ss_pred ---HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3477889999999999985 789999998877653 678889999999999999999999999987554
Q ss_pred hcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 313 LMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 313 ~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
...++..+|.++...|++++|+..|++++... +....+...++.++...|+.++|+.
T Consensus 317 ------~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~------P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 317 ------LPYVRAMYARALRQVGQYTAASDEFVQLAREK------GVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred ------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------ccchHHHHHHHHHHHHCCCHHHHHH
Confidence 34477889999999999999999999888753 3344566667888999999887765
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.87 E-value=2e-20 Score=217.41 Aligned_cols=317 Identities=21% Similarity=0.244 Sum_probs=225.7
Q ss_pred hhhhhhHhhhcCCCcchhHHHHHH------------HHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHH
Q psy10738 3 VGNISSSDSQSGGADGGNMCLELA------------LEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAY 70 (609)
Q Consensus 3 l~~Lg~~~~~~g~~~~a~~~~~l~------------~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~ 70 (609)
+..++.++...|+.+++..++..+ ..+..+...|++++|+..+++++...|.++. ++..+|.++
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~ 611 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPE----AWLMLGRAQ 611 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHH
Confidence 456777888888888777776544 2377788888888888888888887776643 677888888
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---------------
Q psy10738 71 FYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLND--------------- 135 (609)
Q Consensus 71 ~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d--------------- 135 (609)
...|++++|+..++++++. .+....++..+|.++...|++++|+.++++++...+....
T Consensus 612 ~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 685 (899)
T TIGR02917 612 LAAGDLNKAVSSFKKLLAL------QPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRT 685 (899)
T ss_pred HHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Confidence 8888888888888888776 4555667778888888888888888888887765432100
Q ss_pred -------------cHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHH
Q psy10738 136 -------------KLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRA 202 (609)
Q Consensus 136 -------------~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 202 (609)
.+....++..+|.++...|+ +++|+..|++++..... . ..
T Consensus 686 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------------------~~~A~~~~~~~~~~~~~---~----~~ 738 (899)
T TIGR02917 686 ESAKKIAKSLQKQHPKAALGFELEGDLYLRQKD--------------------YPAAIQAYRKALKRAPS---S----QN 738 (899)
T ss_pred HHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHhhCCC---c----hH
Confidence 00122344455666666666 66666666666654211 1 34
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHH
Q psy10738 203 CGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQA 282 (609)
Q Consensus 203 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 282 (609)
+.+++.++...|++++|+..+++++...+.. ..+++.+|.+|...|++++|+.+|+++++..+. ...+
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~ 806 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKTHPND------AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD------NAVV 806 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC------CHHH
Confidence 5566777777777777777777766643322 236777888888888888888888888776543 2556
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHH
Q psy10738 283 CYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTA 362 (609)
Q Consensus 283 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a 362 (609)
+..+|.++...|+ .+|+.++++++.+.+. ...++..+|.++...|++++|+.++++++++. +....+
T Consensus 807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~------~~~~~~ 873 (899)
T TIGR02917 807 LNNLAWLYLELKD-PRALEYAEKALKLAPN------IPAILDTLGWLLVEKGEADRALPLLRKAVNIA------PEAAAI 873 (899)
T ss_pred HHHHHHHHHhcCc-HHHHHHHHHHHhhCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCChHH
Confidence 7778888888888 7788888888876543 23366788999999999999999999999866 335678
Q ss_pred HHHHHHHHHHcCCCCCCCC
Q psy10738 363 QMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 363 ~~~la~l~~~~g~~~~al~ 381 (609)
+..++.++...|++++|..
T Consensus 874 ~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 874 RYHLALALLATGRKAEARK 892 (899)
T ss_pred HHHHHHHHHHcCCHHHHHH
Confidence 8889999999998776643
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=1.8e-19 Score=189.25 Aligned_cols=277 Identities=17% Similarity=0.149 Sum_probs=228.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
...+..|..+...|++++|+..|+++++.+|++. .++..+|.++...|++++|+.++++++... .........+
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~~ 109 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETV----ELHLALGNLFRRRGEVDRAIRIHQNLLSRP--DLTREQRLLA 109 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHcCcHHHHHHHHHHHhcCC--CCCHHHHHHH
Confidence 3445568899999999999999999999998764 478999999999999999999999887631 1112334568
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 182 (609)
+..+|.+|...|++++|+.+|.++++..+ ....++..++.++...|+ +++|+..
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~------~~~~~~~~la~~~~~~g~--------------------~~~A~~~ 163 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGD------FAEGALQQLLEIYQQEKD--------------------WQKAIDV 163 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCc------chHHHHHHHHHHHHHhch--------------------HHHHHHH
Confidence 89999999999999999999999987532 445688899999999999 9999999
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Q psy10738 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEH 262 (609)
Q Consensus 183 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 262 (609)
+++++...... ........+..+|.++...|++++|+.+++++++..+... .++..+|.++...|++++|+.+
T Consensus 164 ~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~ 236 (389)
T PRK11788 164 AERLEKLGGDS-LRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCV------RASILLGDLALAQGDYAAAIEA 236 (389)
T ss_pred HHHHHHhcCCc-chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCH------HHHHHHHHHHHHCCCHHHHHHH
Confidence 99987653221 1123455678899999999999999999999998755432 3788899999999999999999
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHH
Q psy10738 263 YKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYF 342 (609)
Q Consensus 263 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~ 342 (609)
+++++...+. ....++..++.+|...|++++|+.++++++...+.. ..+..++.++...|++++|+..
T Consensus 237 ~~~~~~~~p~-----~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-------~~~~~la~~~~~~g~~~~A~~~ 304 (389)
T PRK11788 237 LERVEEQDPE-----YLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA-------DLLLALAQLLEEQEGPEAAQAL 304 (389)
T ss_pred HHHHHHHChh-----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------hHHHHHHHHHHHhCCHHHHHHH
Confidence 9999876443 234567889999999999999999999998874321 2347899999999999999999
Q ss_pred HHHHHHHH
Q psy10738 343 ATKHLEIS 350 (609)
Q Consensus 343 ~~~al~l~ 350 (609)
++++++..
T Consensus 305 l~~~l~~~ 312 (389)
T PRK11788 305 LREQLRRH 312 (389)
T ss_pred HHHHHHhC
Confidence 99999874
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=3.8e-20 Score=218.42 Aligned_cols=326 Identities=17% Similarity=0.151 Sum_probs=241.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCh--------hh
Q psy10738 27 LEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDK--------LG 98 (609)
Q Consensus 27 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~--------~~ 98 (609)
..|..+...|++++|+..|+++++.+|++.. ++..+|.+|...|++++|+.+|+++++........ ..
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~----a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSE----ALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 4599999999999999999999999998854 88999999999999999999999999876644321 11
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCC------CCCCCCchH-
Q psy10738 99 EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQ------QDPGEYPEE- 171 (609)
Q Consensus 99 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~------~~~~~~~~~- 171 (609)
.......+|.++...|++++|+.+|++++.+.+ ....++..+|.++...|++.++... .+|.. ...
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P------~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~-~~a~ 422 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDN------TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN-TNAV 422 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHH
Confidence 334456679999999999999999999999866 3456788889999998887654331 12221 110
Q ss_pred -------hHHhHHHHHHHHHHHHHHHHHh-C--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHH
Q psy10738 172 -------VKVCLQEAIKYYEQNLALMKEI-N--DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERR 241 (609)
Q Consensus 172 -------~~~~~~~A~~~~~~al~~~~~~-~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 241 (609)
....+++|+.++++........ . ........+..+|.++...|++++|+.+|++++++.+... .
T Consensus 423 ~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~------~ 496 (1157)
T PRK11447 423 RGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSV------W 496 (1157)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------H
Confidence 0123566766665433222111 0 0122234678899999999999999999999999866543 2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCc---------------------------------------------
Q psy10738 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDR--------------------------------------------- 276 (609)
Q Consensus 242 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------------------------- 276 (609)
+++.+|.+|...|++++|+..+++++...+.....
T Consensus 497 ~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~ 576 (1157)
T PRK11447 497 LTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQV 576 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHH
Confidence 78899999999999999999999887753321100
Q ss_pred -----------------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHc
Q psy10738 277 -----------------------AVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAAR 333 (609)
Q Consensus 277 -----------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~ 333 (609)
......+..+|.++...|++++|+..|++++...+. ...++..++.+|...
T Consensus 577 l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~------~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 577 LETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG------NADARLGLIEVDIAQ 650 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHC
Confidence 001124567888888889999999999888887554 345888899999999
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 334 GNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 334 g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
|++++|+.+++++++.. +....++..++.++...|++.+|..
T Consensus 651 g~~~eA~~~l~~ll~~~------p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 651 GDLAAARAQLAKLPATA------NDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred CCHHHHHHHHHHHhccC------CCChHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999988776543 3455677788888888888877654
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.86 E-value=8.1e-20 Score=212.35 Aligned_cols=316 Identities=20% Similarity=0.185 Sum_probs=183.4
Q ss_pred hhhhHhhhcCCCcchhHHHHHH------------HHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH
Q psy10738 5 NISSSDSQSGGADGGNMCLELA------------LEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFY 72 (609)
Q Consensus 5 ~Lg~~~~~~g~~~~a~~~~~l~------------~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~ 72 (609)
.++..+...|+++++...+... ..|..+...|++++|+.+|+++++..|.+.. ++..+|.++..
T Consensus 436 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~la~~~~~ 511 (899)
T TIGR02917 436 LLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFP----AAANLARIDIQ 511 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHH
Confidence 4556666666666666554332 2377777777777777777777777776533 56667777777
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 73 LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHA 152 (609)
Q Consensus 73 ~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~ 152 (609)
.|++++|+..+++++.. .+....++..++.++...|++++|+.++.+++...+ .....+..++.+|..
T Consensus 512 ~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~ 579 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTI------DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP------QEIEPALALAQYYLG 579 (899)
T ss_pred CCCHHHHHHHHHHHHHh------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------cchhHHHHHHHHHHH
Confidence 77777777777777665 444555666667777677777777777766655433 222344455555555
Q ss_pred cccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 153 KGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 153 ~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 232 (609)
.|+ +++|+.++++++... +....++..+|.++...|++++|+.+|+++++..+.
T Consensus 580 ~~~--------------------~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 633 (899)
T TIGR02917 580 KGQ--------------------LKKALAILNEAADAA------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD 633 (899)
T ss_pred CCC--------------------HHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 555 555555555544321 112234555555555555555555555555544322
Q ss_pred hCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC----------------------------CcHHHHHHHH
Q psy10738 233 FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG----------------------------DRAVEAQACY 284 (609)
Q Consensus 233 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------------------------~~~~~~~~~~ 284 (609)
.. .++..+|.++...|++++|+.+|++++...+... ........+.
T Consensus 634 ~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 707 (899)
T TIGR02917 634 SA------LALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFE 707 (899)
T ss_pred Ch------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHH
Confidence 11 1444455555555555555555555444322210 0001234455
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHH
Q psy10738 285 SLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQM 364 (609)
Q Consensus 285 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~ 364 (609)
.+|.++...|++++|+.+|++++...+.. ..+..++.++...|++++|...+++++... +....++.
T Consensus 708 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~------~~~~~~~~ 774 (899)
T TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALKRAPSS-------QNAIKLHRALLASGNTAEAVKTLEAWLKTH------PNDAVLRT 774 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCc-------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHH
Confidence 66677777777777777777766653321 345566777777777777777777766543 34456777
Q ss_pred HHHHHHHHcCCCCCCCC
Q psy10738 365 NVTDLRKALGMSTNDLS 381 (609)
Q Consensus 365 ~la~l~~~~g~~~~al~ 381 (609)
.++.++...|+...|..
T Consensus 775 ~la~~~~~~g~~~~A~~ 791 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIK 791 (899)
T ss_pred HHHHHHHHCcCHHHHHH
Confidence 77777777777666543
No 16
>KOG1126|consensus
Probab=99.86 E-value=1.2e-20 Score=193.63 Aligned_cols=294 Identities=17% Similarity=0.160 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHH
Q psy10738 21 MCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEA 100 (609)
Q Consensus 21 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~ 100 (609)
..+..+.+|......-+..+|+..|++.-...++ ..+++.++|.+|+.+++|++|..+|+.+-.+ .+...
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~n----t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~------~p~rv 387 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYN----TGWVLSQLGRAYFELIEYDQAERIFSLVRRI------EPYRV 387 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCC----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------ccccc
Confidence 3444555577777788889999999994333333 2478999999999999999999999988765 33322
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHH
Q psy10738 101 KSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAI 180 (609)
Q Consensus 101 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~ 180 (609)
+..-....+++.+.+--+--...+..++..+ .....|..+|++|..+++ ++.|+
T Consensus 388 ~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~------~sPesWca~GNcfSLQkd--------------------h~~Ai 441 (638)
T KOG1126|consen 388 KGMEIYSTTLWHLQDEVALSYLAQDLIDTDP------NSPESWCALGNCFSLQKD--------------------HDTAI 441 (638)
T ss_pred cchhHHHHHHHHHHhhHHHHHHHHHHHhhCC------CCcHHHHHhcchhhhhhH--------------------HHHHH
Confidence 2222223333333222221122222222222 334456666666666666 66666
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHH
Q psy10738 181 KYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAAS 260 (609)
Q Consensus 181 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 260 (609)
++|++|+.+ .+..+.+|..+|.=+....+|+.|..+|++|+.+.+++-. +|+.+|.+|.++++++.|.
T Consensus 442 k~f~RAiQl------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn------AwYGlG~vy~Kqek~e~Ae 509 (638)
T KOG1126|consen 442 KCFKRAIQL------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN------AWYGLGTVYLKQEKLEFAE 509 (638)
T ss_pred HHHHHhhcc------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH------HHHhhhhheeccchhhHHH
Confidence 666666665 3444556666666666666666666666666665554443 6666666666666666666
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHH
Q psy10738 261 EHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKAL 340 (609)
Q Consensus 261 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~ 340 (609)
-+|++|+++.+.. ......+|.++.+.|+.++|+.++++|+.+.+.. .-..+..|.++..++++++|+
T Consensus 510 ~~fqkA~~INP~n------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn------~l~~~~~~~il~~~~~~~eal 577 (638)
T KOG1126|consen 510 FHFQKAVEINPSN------SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN------PLCKYHRASILFSLGRYVEAL 577 (638)
T ss_pred HHHHhhhcCCccc------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC------chhHHHHHHHHHhhcchHHHH
Confidence 6666666665543 3445556666666666666666666666554432 224455566666666666666
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCC
Q psy10738 341 YFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDL 380 (609)
Q Consensus 341 ~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al 380 (609)
..+++..++. +.+..++..+|.+|..+|+...|+
T Consensus 578 ~~LEeLk~~v------P~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 578 QELEELKELV------PQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred HHHHHHHHhC------cchHHHHHHHHHHHHHHccchHHH
Confidence 6666655555 556666666666666666655544
No 17
>KOG1941|consensus
Probab=99.85 E-value=1.4e-18 Score=165.73 Aligned_cols=333 Identities=18% Similarity=0.282 Sum_probs=293.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.....|..++...++++|+..+.+.+..-.+ .......|-.+..+...+|.|++++.+.-..+..+....|......++
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~-~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ 86 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSD-LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAY 86 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHH-HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999876432 233445677788889999999999999999999999999899999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
.+++..+....++.+++.+....+.+-. ......-..+...+|+.+..++. +++++++|
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpg-t~~~~~~gq~~l~~~~Ahlgls~--------------------fq~~Lesf 145 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPG-TRAGQLGGQVSLSMGNAHLGLSV--------------------FQKALESF 145 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCC-CCcccccchhhhhHHHHhhhHHH--------------------HHHHHHHH
Confidence 9999999999999999999887765422 11112334567779999999999 99999999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCh----HHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 184 EQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDK----AAERRANSNLGNSHIFLGEYQAA 259 (609)
Q Consensus 184 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A 259 (609)
++|++++...+|+.....++..||.++..+.++++|+-+..+|.++....+-. .....+++.++..+..+|..-.|
T Consensus 146 e~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA 225 (518)
T KOG1941|consen 146 EKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDA 225 (518)
T ss_pred HHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccH
Confidence 99999999999999889999999999999999999999999999999886522 23466888999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHH-
Q psy10738 260 SEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEK- 338 (609)
Q Consensus 260 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~- 338 (609)
.++.+++.++.-..++....+.....+|.+|...|+.+.|..-|+.|..+...++++.+...++...|.++....-..+
T Consensus 226 ~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~ 305 (518)
T KOG1941|consen 226 MECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKI 305 (518)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887766666
Q ss_pred ----HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCC
Q psy10738 339 ----ALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTN 378 (609)
Q Consensus 339 ----A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~ 378 (609)
|+++-++.++++.++|........+..++.+|...|..++
T Consensus 306 ~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~ 349 (518)
T KOG1941|consen 306 CNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDE 349 (518)
T ss_pred cccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhH
Confidence 9999999999999999999999999999999999987543
No 18
>KOG1126|consensus
Probab=99.84 E-value=4e-20 Score=189.93 Aligned_cols=266 Identities=18% Similarity=0.194 Sum_probs=223.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHcCChhhHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQ-DLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~~~~~d~~~~~~a~ 103 (609)
+...|..|+..++|++|.++|+.+-+..|--.+ -.-....+++++.+ +-++.++-+ .++. .+....+|
T Consensus 356 l~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~----~meiyST~LWHLq~-~v~Ls~Laq~Li~~------~~~sPesW 424 (638)
T KOG1126|consen 356 LSQLGRAYFELIEYDQAERIFSLVRRIEPYRVK----GMEIYSTTLWHLQD-EVALSYLAQDLIDT------DPNSPESW 424 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc----chhHHHHHHHHHHh-hHHHHHHHHHHHhh------CCCCcHHH
Confidence 445599999999999999999999998883222 11122334444433 223333332 2232 66778899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
..+|++|..+++++.|+++|++|+.+.+ ..+.+|..+|.-+....+ |++|..+|
T Consensus 425 ca~GNcfSLQkdh~~Aik~f~RAiQldp------~faYayTLlGhE~~~~ee--------------------~d~a~~~f 478 (638)
T KOG1126|consen 425 CALGNCFSLQKDHDTAIKCFKRAIQLDP------RFAYAYTLLGHESIATEE--------------------FDKAMKSF 478 (638)
T ss_pred HHhcchhhhhhHHHHHHHHHHHhhccCC------ccchhhhhcCChhhhhHH--------------------HHhHHHHH
Confidence 9999999999999999999999999987 677889999988888888 99999999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q psy10738 184 EQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHY 263 (609)
Q Consensus 184 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 263 (609)
.+|+.+ .+....+|+.+|.+|.++++++.|.-+|++|+++.+.... ....+|.++...|+.++|+.+|
T Consensus 479 r~Al~~------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv------i~~~~g~~~~~~k~~d~AL~~~ 546 (638)
T KOG1126|consen 479 RKALGV------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV------ILCHIGRIQHQLKRKDKALQLY 546 (638)
T ss_pred HhhhcC------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchh------HHhhhhHHHHHhhhhhHHHHHH
Confidence 999988 5667889999999999999999999999999999877654 7888999999999999999999
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHH
Q psy10738 264 KRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFA 343 (609)
Q Consensus 264 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~ 343 (609)
++|+.+.+.. ....+..|.++..++++++|+..+++..++.++ ++.++..+|.+|..+|+.+.|+..|
T Consensus 547 ~~A~~ld~kn------~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~------es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 547 EKAIHLDPKN------PLCKYHRASILFSLGRYVEALQELEELKELVPQ------ESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred HHHHhcCCCC------chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc------hHHHHHHHHHHHHHHccchHHHHhh
Confidence 9999988764 567788999999999999999999999888876 6779999999999999999999999
Q ss_pred HHHHHHHH
Q psy10738 344 TKHLEISK 351 (609)
Q Consensus 344 ~~al~l~~ 351 (609)
.-|.++..
T Consensus 615 ~~A~~ldp 622 (638)
T KOG1126|consen 615 SWALDLDP 622 (638)
T ss_pred HHHhcCCC
Confidence 98888653
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=4.6e-18 Score=178.60 Aligned_cols=294 Identities=15% Similarity=0.070 Sum_probs=233.5
Q ss_pred hhhhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHH
Q psy10738 4 GNISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYF 71 (609)
Q Consensus 4 ~~Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~ 71 (609)
+.+|..+...|+++.|...+..++. |..+...|++++|+..+++++...+........++..+|.+|.
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 3457777788888888877765554 8889999999999999999998654444444568899999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Q psy10738 72 YLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYH 151 (609)
Q Consensus 72 ~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~ 151 (609)
..|++++|+.+++++++. .+....++..++.++...|++++|+..+.+++...+.. ........+..+|.++.
T Consensus 119 ~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDE------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS-LRVEIAHFYCELAQQAL 191 (389)
T ss_pred HCCCHHHHHHHHHHHHcC------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHH
Confidence 999999999999999876 45567789999999999999999999999988765422 11234556788999999
Q ss_pred HcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 152 AKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAR 231 (609)
Q Consensus 152 ~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 231 (609)
..|+ +++|+.+++++++.. +....++..+|.++...|++++|+.++++++...+
T Consensus 192 ~~~~--------------------~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 192 ARGD--------------------LDAARALLKKALAAD------PQCVRASILLGDLALAQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred hCCC--------------------HHHHHHHHHHHHhHC------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence 9999 999999999998863 23456788999999999999999999999987643
Q ss_pred HhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q psy10738 232 EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 311 (609)
Q Consensus 232 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 311 (609)
. ....++..++.+|...|++++|+.++++++...+. ...+..+|.++...|++++|+..+++++...+
T Consensus 246 ~-----~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~-------~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P 313 (389)
T PRK11788 246 E-----YLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG-------ADLLLALAQLLEEQEGPEAAQALLREQLRRHP 313 (389)
T ss_pred h-----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------chHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc
Confidence 2 22346788999999999999999999999887543 12347899999999999999999999998754
Q ss_pred HhcchhhHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHH
Q psy10738 312 QLMDRVGEGRACWSLGNAHAA---RGNHEKALYFATKHLEI 349 (609)
Q Consensus 312 ~~~~~~~~~~~~~~La~~~~~---~g~~~~A~~~~~~al~l 349 (609)
+. . .+..+...+.. .|+..+|+..+++.++.
T Consensus 314 ~~------~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 314 SL------R-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred CH------H-HHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 31 2 22223333332 56899999999888763
No 20
>KOG2003|consensus
Probab=99.82 E-value=4e-20 Score=180.45 Aligned_cols=195 Identities=20% Similarity=0.160 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCC
Q psy10738 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGE 255 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 255 (609)
+++|.+.|++++.- ......+++++|..+..+|+.++|+.+|-+.-.+...... +++.++.+|..+.+
T Consensus 506 ~dka~~~ykeal~n------dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~e------vl~qianiye~led 573 (840)
T KOG2003|consen 506 LDKAAEFYKEALNN------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAE------VLVQIANIYELLED 573 (840)
T ss_pred HHHHHHHHHHHHcC------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHH------HHHHHHHHHHHhhC
Confidence 56666666655542 3445556666666666666666666666665555443322 56666666666666
Q ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCC
Q psy10738 256 YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGN 335 (609)
Q Consensus 256 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~ 335 (609)
..+|++++.++..+.+. ...++..||.+|-+.|+-.+|..++-.....++. ..+...+||..|....-
T Consensus 574 ~aqaie~~~q~~slip~------dp~ilskl~dlydqegdksqafq~~ydsyryfp~------nie~iewl~ayyidtqf 641 (840)
T KOG2003|consen 574 PAQAIELLMQANSLIPN------DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC------NIETIEWLAAYYIDTQF 641 (840)
T ss_pred HHHHHHHHHHhcccCCC------CHHHHHHHHHHhhcccchhhhhhhhhhcccccCc------chHHHHHHHHHHHhhHH
Confidence 66666666666655543 2455666666666666666666666555544443 33456678888888888
Q ss_pred hHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCCCchhhhhhhcccCCCCCCCCCCcchhhhcccccc
Q psy10738 336 HEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLSPDSLQLINSYANANQPSPGVRRYNRVRRSSMEQL 415 (609)
Q Consensus 336 ~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (609)
+++|+.||++|.-+. +......+.++.++...|++..|+. .+...+|+..+++
T Consensus 642 ~ekai~y~ekaaliq------p~~~kwqlmiasc~rrsgnyqka~d---------------------~yk~~hrkfpedl 694 (840)
T KOG2003|consen 642 SEKAINYFEKAALIQ------PNQSKWQLMIASCFRRSGNYQKAFD---------------------LYKDIHRKFPEDL 694 (840)
T ss_pred HHHHHHHHHHHHhcC------ccHHHHHHHHHHHHHhcccHHHHHH---------------------HHHHHHHhCccch
Confidence 889999998887654 7788899999999999999877654 3446689999999
Q ss_pred cccccC
Q psy10738 416 DLIKLT 421 (609)
Q Consensus 416 ~~~~~~ 421 (609)
+|+++.
T Consensus 695 dclkfl 700 (840)
T KOG2003|consen 695 DCLKFL 700 (840)
T ss_pred HHHHHH
Confidence 998874
No 21
>KOG1155|consensus
Probab=99.82 E-value=7.3e-18 Score=165.85 Aligned_cols=286 Identities=19% Similarity=0.202 Sum_probs=214.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLG 107 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg 107 (609)
.|.+.+...|+++|+..|+...+.+|-... -+....++++...+-.+---..+.+..+ +....+....+|
T Consensus 268 ~A~~~y~~rDfD~a~s~Feei~knDPYRl~----dmdlySN~LYv~~~~skLs~LA~~v~~i------dKyR~ETCCiIa 337 (559)
T KOG1155|consen 268 IAAASYNQRDFDQAESVFEEIRKNDPYRLD----DMDLYSNVLYVKNDKSKLSYLAQNVSNI------DKYRPETCCIIA 337 (559)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCcch----hHHHHhHHHHHHhhhHHHHHHHHHHHHh------ccCCccceeeeh
Confidence 366777777888888888887777663221 1112233333333322222222333333 444556677789
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHH
Q psy10738 108 NTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNL 187 (609)
Q Consensus 108 ~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 187 (609)
+.|...++.++|+.+|++|+++.+ ....+|..+|.-|..+.+ ...|+..|..|+
T Consensus 338 NYYSlr~eHEKAv~YFkRALkLNp------~~~~aWTLmGHEyvEmKN--------------------t~AAi~sYRrAv 391 (559)
T KOG1155|consen 338 NYYSLRSEHEKAVMYFKRALKLNP------KYLSAWTLMGHEYVEMKN--------------------THAAIESYRRAV 391 (559)
T ss_pred hHHHHHHhHHHHHHHHHHHHhcCc------chhHHHHHhhHHHHHhcc--------------------cHHHHHHHHHHH
Confidence 999999999999999999999988 677799999999999999 899999999999
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy10738 188 ALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTL 267 (609)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 267 (609)
++ .+...++|+.||..|..++-+.=|+-+|++|...-+... +.|..||.+|.++++.++|+++|++++
T Consensus 392 di------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs------Rlw~aLG~CY~kl~~~~eAiKCykrai 459 (559)
T KOG1155|consen 392 DI------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDS------RLWVALGECYEKLNRLEEAIKCYKRAI 459 (559)
T ss_pred hc------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCch------HHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 98 566678999999999999999999999999988755433 388899999999999999999999998
Q ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcch-hhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy10738 268 VLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR-VGEGRACWSLGNAHAARGNHEKALYFATKH 346 (609)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~La~~~~~~g~~~~A~~~~~~a 346 (609)
..... ...+++.||.+|..++++++|..+|++.++.....+.. .....+...||..+.+.+++++|..|..++
T Consensus 460 ~~~dt------e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 460 LLGDT------EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred hcccc------chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 87654 36789999999999999999999999999866443332 224556667999999999999999998887
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHc
Q psy10738 347 LEISKQLGDPLGQVTAQMNVTDLRKAL 373 (609)
Q Consensus 347 l~l~~~~~~~~~~~~a~~~la~l~~~~ 373 (609)
+.-. .....+...+-++...+
T Consensus 534 ~~~~------~e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 534 LKGE------TECEEAKALLREIRKIQ 554 (559)
T ss_pred hcCC------chHHHHHHHHHHHHHhc
Confidence 7632 33444555555554443
No 22
>KOG0547|consensus
Probab=99.81 E-value=5.7e-18 Score=167.55 Aligned_cols=277 Identities=16% Similarity=0.187 Sum_probs=229.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
...+-.+|..++..|+|++||.+|.+||++.|+.+ ..|.+++-+|...|+|++.++.+.+++++ .|..+.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~ep----iFYsNraAcY~~lgd~~~Vied~TkALEl------~P~Y~K 184 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEP----IFYSNRAACYESLGDWEKVIEDCTKALEL------NPDYVK 184 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCc----hhhhhHHHHHHHHhhHHHHHHHHHHHhhc------CcHHHH
Confidence 33445569999999999999999999999999874 38899999999999999999999999999 899999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH------------------HHHHHHH-----H-HcC-C---------------------
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCC------------------KRHLEIS-----R-QLN-D--------------------- 135 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~------------------~~al~l~-----~-~~~-d--------------------- 135 (609)
+++..+..+..+|++++|+.-. ++.+... . ..+ +
T Consensus 185 Al~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 185 ALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 9999999999999988775432 1111100 0 000 0
Q ss_pred ---------------------------------------------------------cHHHHHHHHHHHHHHHHcccccc
Q psy10738 136 ---------------------------------------------------------KLSEGRALYNLGNVYHAKGKAIG 158 (609)
Q Consensus 136 ---------------------------------------------------------~~~~~~~~~~lg~~~~~~g~~~~ 158 (609)
....+.++...|..++..|+
T Consensus 265 ~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~--- 341 (606)
T KOG0547|consen 265 PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGD--- 341 (606)
T ss_pred ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCC---
Confidence 01224455556666666666
Q ss_pred cCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHH
Q psy10738 159 KVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAA 238 (609)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (609)
+-.|...+.+++++... ....|..+|.+|....+.++-...|.+|..+.+++.+
T Consensus 342 -----------------~~~a~~d~~~~I~l~~~------~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d--- 395 (606)
T KOG0547|consen 342 -----------------SLGAQEDFDAAIKLDPA------FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD--- 395 (606)
T ss_pred -----------------chhhhhhHHHHHhcCcc------cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc---
Confidence 77777778887777332 2334889999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhh
Q psy10738 239 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVG 318 (609)
Q Consensus 239 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 318 (609)
+|+..|.+++-+++|++|+.-|++++.+.++. +..+..++.+.++++.++++...|+.+..-++..
T Consensus 396 ---vYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~------~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~----- 461 (606)
T KOG0547|consen 396 ---VYYHRGQMRFLLQQYEEAIADFQKAISLDPEN------AYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC----- 461 (606)
T ss_pred ---hhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-----
Confidence 99999999999999999999999999999885 7889999999999999999999999999888774
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q psy10738 319 EGRACWSLGNAHAARGNHEKALYFATKHLEISKQ 352 (609)
Q Consensus 319 ~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~ 352 (609)
.+++...|+++..++++++|.+.|.+|+++...
T Consensus 462 -~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 462 -PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred -chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 458889999999999999999999999998765
No 23
>KOG0547|consensus
Probab=99.81 E-value=3.1e-18 Score=169.42 Aligned_cols=310 Identities=14% Similarity=0.079 Sum_probs=231.6
Q ss_pred chhhhhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHH
Q psy10738 2 SVGNISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNA 69 (609)
Q Consensus 2 ~l~~Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~ 69 (609)
.+.+.|.-+.+.|.++.|+.||..++. +-+|...|+|++.++...+|++++|+. +.+++..+.+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y----~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDY----VKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH----HHHHHHHHHH
Confidence 467889999999999999999998776 788999999999999999999999986 5588899999
Q ss_pred HHHhCCHHHHHHHHH------------------HHH--------------------------------------------
Q psy10738 70 YFYLGDYQKAMQYHK------------------QDL-------------------------------------------- 87 (609)
Q Consensus 70 ~~~~g~~~~A~~~~~------------------~al-------------------------------------------- 87 (609)
+-.+|++++|+.... +.|
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 999999988875421 111
Q ss_pred ---------------------------HHHHHc------------CC--hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10738 88 ---------------------------TLARNM------------ED--KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRH 126 (609)
Q Consensus 88 ---------------------------~~~~~~------------~d--~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 126 (609)
..+.+. -| -...+.++...|..++..|++..|...++++
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 000000 00 0122566777788888888888888888888
Q ss_pred HHHHHHcCCc----------------------------HHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHH
Q psy10738 127 LEISRQLNDK----------------------------LSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQE 178 (609)
Q Consensus 127 l~l~~~~~d~----------------------------~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 178 (609)
+.+.+..... +....+|+..|.+++.+++ |++
T Consensus 353 I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q--------------------~e~ 412 (606)
T KOG0547|consen 353 IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQ--------------------YEE 412 (606)
T ss_pred HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHH--------------------HHH
Confidence 8776533221 1123456666666666666 888
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHH
Q psy10738 179 AIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQA 258 (609)
Q Consensus 179 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 258 (609)
|+.-|++++.+ .+..+.++..++.+.+++++++++...|+++...++.... +|...|.++..+++|+.
T Consensus 413 A~aDF~Kai~L------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~E------vy~~fAeiLtDqqqFd~ 480 (606)
T KOG0547|consen 413 AIADFQKAISL------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPE------VYNLFAEILTDQQQFDK 480 (606)
T ss_pred HHHHHHHHhhc------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch------HHHHHHHHHhhHHhHHH
Confidence 88888888877 5666778888888888888888888888888887777666 88888888889999999
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChH
Q psy10738 259 ASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY-TLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHE 337 (609)
Q Consensus 259 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~ 337 (609)
|++.|.+++.+.+........+..+.+-|.+. .-.+++..|+..+.+|+++.++. -.++..||.+..++|+.+
T Consensus 481 A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkc------e~A~~tlaq~~lQ~~~i~ 554 (606)
T KOG0547|consen 481 AVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKC------EQAYETLAQFELQRGKID 554 (606)
T ss_pred HHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchH------HHHHHHHHHHHHHHhhHH
Confidence 99999998888776432222222333333222 23478888999988888887663 348999999999999999
Q ss_pred HHHHHHHHHHHHHHHc
Q psy10738 338 KALYFATKHLEISKQL 353 (609)
Q Consensus 338 ~A~~~~~~al~l~~~~ 353 (609)
+|+++|++++.+++..
T Consensus 555 eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 555 EAIELFEKSAQLARTE 570 (606)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 9999999999998654
No 24
>KOG1155|consensus
Probab=99.80 E-value=1.1e-17 Score=164.50 Aligned_cols=292 Identities=16% Similarity=0.147 Sum_probs=233.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHh-CCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQA-GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNL 106 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~l 106 (609)
.+.++......++++.-++..+.. -|... .+-...|.+.+...++++|+..|+...+. +|....-.-..
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~----~i~~~~A~~~y~~rDfD~a~s~Feei~kn------DPYRl~dmdly 302 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSM----YIKTQIAAASYNQRDFDQAESVFEEIRKN------DPYRLDDMDLY 302 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccH----HHHHHHHHHHhhhhhHHHHHHHHHHHHhc------CCCcchhHHHH
Confidence 355565666777777777777776 34442 25566788888888899999888887665 44444444555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHH
Q psy10738 107 GNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQN 186 (609)
Q Consensus 107 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 186 (609)
.++++...+-.+-.-..+.+..+.+ ........+|+.|...++ .++|+.||++|
T Consensus 303 SN~LYv~~~~skLs~LA~~v~~idK------yR~ETCCiIaNYYSlr~e--------------------HEKAv~YFkRA 356 (559)
T KOG1155|consen 303 SNVLYVKNDKSKLSYLAQNVSNIDK------YRPETCCIIANYYSLRSE--------------------HEKAVMYFKRA 356 (559)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHhcc------CCccceeeehhHHHHHHh--------------------HHHHHHHHHHH
Confidence 5666665554443334444444444 445677788999999998 99999999999
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 187 LALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRT 266 (609)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 266 (609)
+++ ++....+|..+|.-|..+.+...|+..|+.|+++.+..-. +|+.+|.+|..++-..=|+-||++|
T Consensus 357 LkL------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR------AWYGLGQaYeim~Mh~YaLyYfqkA 424 (559)
T KOG1155|consen 357 LKL------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR------AWYGLGQAYEIMKMHFYALYYFQKA 424 (559)
T ss_pred Hhc------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH------HHhhhhHHHHHhcchHHHHHHHHHH
Confidence 999 6677789999999999999999999999999999876543 9999999999999999999999999
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy10738 267 LVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKH 346 (609)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~a 346 (609)
+..-+. ....|..||.+|.++++.++|+++|.+++..... ...+++.||.+|..+++..+|..+|++.
T Consensus 425 ~~~kPn------DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt------e~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 425 LELKPN------DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT------EGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred HhcCCC------chHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc------chHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 987664 3778999999999999999999999999987544 4569999999999999999999999999
Q ss_pred HHHHHHcCCCch-HHHHHHHHHHHHHHcCCCCCC
Q psy10738 347 LEISKQLGDPLG-QVTAQMNVTDLRKALGMSTND 379 (609)
Q Consensus 347 l~l~~~~~~~~~-~~~a~~~la~l~~~~g~~~~a 379 (609)
++.....|.... ...+..-||.-....++.+.|
T Consensus 493 v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 493 VEVSELEGEIDDETIKARLFLAEYFKKMKDFDEA 526 (559)
T ss_pred HHHHHhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence 998766665444 677888899999999988765
No 25
>KOG2002|consensus
Probab=99.80 E-value=3e-17 Score=174.71 Aligned_cols=315 Identities=18% Similarity=0.212 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--------
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM-------- 93 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------- 93 (609)
++.++.+|.+.+..|+|..|+.+|+.++..+|.-. +.....+|.|++.+|..+.|+..|.+++++-+..
T Consensus 164 il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~---aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~ 240 (1018)
T KOG2002|consen 164 ILALLGKARIAYNKKDYRGALKYYKKALRINPACK---ADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALG 240 (1018)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC---CCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHH
Confidence 34455557777777888888888888777776422 2234556677777777777777777777661110
Q ss_pred -----------------------CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q psy10738 94 -----------------------EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVY 150 (609)
Q Consensus 94 -----------------------~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~ 150 (609)
...+..+.++..|++.++..|+|..+...+..++... ......+..++++|..|
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t---~~~~~~aes~Y~~gRs~ 317 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT---ENKSIKAESFYQLGRSY 317 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHH
Confidence 0022334455556666666666666666666555443 12234555666667777
Q ss_pred HHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 151 HAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIA 230 (609)
Q Consensus 151 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 230 (609)
+.+|+ |++|..||.+++.... ......+..+|.+|...|+++.|+.+|++.+...
T Consensus 318 Ha~Gd--------------------~ekA~~yY~~s~k~~~-----d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~ 372 (1018)
T KOG2002|consen 318 HAQGD--------------------FEKAFKYYMESLKADN-----DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL 372 (1018)
T ss_pred Hhhcc--------------------HHHHHHHHHHHHccCC-----CCccccccchhHHHHHhchHHHHHHHHHHHHHhC
Confidence 77776 6677666666665421 1124455666666666777777777766666655
Q ss_pred HHhCChHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 231 REFGDKAAERRANSNLGNSHIFLG----EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH 306 (609)
Q Consensus 231 ~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 306 (609)
+.... +...+|.+|...+ ..+.|..++.+++...+. ...+|..+|.++... +...++.+|..|
T Consensus 373 p~~~e------tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~------d~~a~l~laql~e~~-d~~~sL~~~~~A 439 (1018)
T KOG2002|consen 373 PNNYE------TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV------DSEAWLELAQLLEQT-DPWASLDAYGNA 439 (1018)
T ss_pred cchHH------HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc------cHHHHHHHHHHHHhc-ChHHHHHHHHHH
Confidence 54433 5555666666554 445555566655554432 367888888887655 444559999999
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCC----chHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 307 LIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDP----LGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 307 l~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~----~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
+.+....+.. .....+.++|..++..|++.+|..++..|+....+..+. ....+..+++|.++..+++...|..
T Consensus 440 ~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e 517 (1018)
T KOG2002|consen 440 LDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEE 517 (1018)
T ss_pred HHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHH
Confidence 9888876655 667899999999999999999999999999985533222 2346789999999999998876643
No 26
>KOG2002|consensus
Probab=99.80 E-value=2.3e-17 Score=175.59 Aligned_cols=288 Identities=16% Similarity=0.178 Sum_probs=223.8
Q ss_pred hHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHH
Q psy10738 38 CRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYD 117 (609)
Q Consensus 38 ~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~ 117 (609)
+..|+..+.++...++.+| .++..|++.|+..|+|..+..+...++... ......+..++++|.+|..+|+|+
T Consensus 252 ~~~~~~ll~~ay~~n~~nP----~~l~~LAn~fyfK~dy~~v~~la~~ai~~t---~~~~~~aes~Y~~gRs~Ha~Gd~e 324 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNENP----VALNHLANHFYFKKDYERVWHLAEHAIKNT---ENKSIKAESFYQLGRSYHAQGDFE 324 (1018)
T ss_pred HHHHHHHHHHHHhhcCCCc----HHHHHHHHHHhhcccHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHhhccHH
Confidence 3344444444444444443 367889999999999999999999988774 235677889999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChH
Q psy10738 118 EAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTA 197 (609)
Q Consensus 118 ~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 197 (609)
+|..||.+++...+. .....++.+|.+|...|+ ++.|+.+|++.++. .+
T Consensus 325 kA~~yY~~s~k~~~d-----~~~l~~~GlgQm~i~~~d--------------------le~s~~~fEkv~k~------~p 373 (1018)
T KOG2002|consen 325 KAFKYYMESLKADND-----NFVLPLVGLGQMYIKRGD--------------------LEESKFCFEKVLKQ------LP 373 (1018)
T ss_pred HHHHHHHHHHccCCC-----CccccccchhHHHHHhch--------------------HHHHHHHHHHHHHh------Cc
Confidence 999999999886652 245678899999999999 99999999998887 44
Q ss_pred HHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q psy10738 198 AQGRACGNLGNTYYLLG----NFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL 273 (609)
Q Consensus 198 ~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 273 (609)
....+...||.+|...+ ..+.|..+..++++..+... .+|..+|.++....-+.. +.+|..|+.+....
T Consensus 374 ~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~------~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~ 446 (1018)
T KOG2002|consen 374 NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS------EAWLELAQLLEQTDPWAS-LDAYGNALDILESK 446 (1018)
T ss_pred chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH------HHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHc
Confidence 55667888899988876 56778888888877664433 388999988876555555 99999999888876
Q ss_pred CCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcch----hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy10738 274 GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR----VGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349 (609)
Q Consensus 274 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l 349 (609)
+.. .-...+.++|..++..|++++|..++..|+..+....+. .......+++|.++..+++++.|...|...+..
T Consensus 447 ~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 447 GKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred CCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 655 567889999999999999999999999999885432221 233556889999999999999999999988876
Q ss_pred HHHcCCCchHHHHHHHHHHHHHHcCCCC
Q psy10738 350 SKQLGDPLGQVTAQMNVTDLRKALGMST 377 (609)
Q Consensus 350 ~~~~~~~~~~~~a~~~la~l~~~~g~~~ 377 (609)
. ++...++..++-.....+...
T Consensus 526 h------p~YId~ylRl~~ma~~k~~~~ 547 (1018)
T KOG2002|consen 526 H------PGYIDAYLRLGCMARDKNNLY 547 (1018)
T ss_pred C------chhHHHHHHhhHHHHhccCcH
Confidence 5 677777777774444444433
No 27
>KOG1941|consensus
Probab=99.79 E-value=2.1e-16 Score=150.93 Aligned_cols=304 Identities=17% Similarity=0.214 Sum_probs=263.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAG--TDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNL 106 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~l 106 (609)
.......|.|++++.+--..++.. -++....-.++.+++..+....++.+++.+.+..+.+-.... ...-..++..+
T Consensus 50 ~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~-~~~~gq~~l~~ 128 (518)
T KOG1941|consen 50 VTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRA-GQLGGQVSLSM 128 (518)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCc-ccccchhhhhH
Confidence 566778888888887766665543 345556677899999999999999999999888777621111 12224667779
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHH
Q psy10738 107 GNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQN 186 (609)
Q Consensus 107 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 186 (609)
|+.+..++.|++++++|++|+.++...+|+.....++..||.+|....+ +++|.-+..+|
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D--------------------~~Kal~f~~kA 188 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD--------------------YEKALFFPCKA 188 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh--------------------hhHHhhhhHhH
Confidence 9999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHhCC----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Q psy10738 187 LALMKEIND----TAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEH 262 (609)
Q Consensus 187 l~~~~~~~~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 262 (609)
.++....+- ......+++.++..+..+|..-.|.++.+++.+++-..++....+.....+|.+|...|+.+.|..-
T Consensus 189 ~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~r 268 (518)
T KOG1941|consen 189 AELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRR 268 (518)
T ss_pred HHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHH
Confidence 999988752 2334668899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHH-----HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChH
Q psy10738 263 YKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT-----AIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHE 337 (609)
Q Consensus 263 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~ 337 (609)
|+.|.......++......++...|.++....-..+ |+++-+++++++.+++.+......+..++.+|..+|.-+
T Consensus 269 Ye~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d 348 (518)
T KOG1941|consen 269 YEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQD 348 (518)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchh
Confidence 999999999999999999999999999887766666 999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHc
Q psy10738 338 KALYFATKHLEISKQL 353 (609)
Q Consensus 338 ~A~~~~~~al~l~~~~ 353 (609)
+-..++..+-+...++
T Consensus 349 ~~~~h~~ra~~~~~e~ 364 (518)
T KOG1941|consen 349 ELRAHVVRAHECVEET 364 (518)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888877665443
No 28
>KOG1173|consensus
Probab=99.79 E-value=2.3e-17 Score=166.35 Aligned_cols=287 Identities=20% Similarity=0.234 Sum_probs=240.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
-+..+++.++..++|.+..+..+..++.+|-++.. .-..+| ++..+|+..+=...-.+.++. .|..+..|
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~---~~~~ia-~l~el~~~n~Lf~lsh~LV~~------yP~~a~sW 315 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKDPFHLPC---LPLHIA-CLYELGKSNKLFLLSHKLVDL------YPSKALSW 315 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcch---HHHHHH-HHHHhcccchHHHHHHHHHHh------CCCCCcch
Confidence 34456999999999999999999999999977653 234566 777888876655555555555 78888999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
+..|..|...|++.+|..+|.++-.+.+ ..+.+|...|..|...|+ .++|+..|
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~lD~------~fgpaWl~fghsfa~e~E--------------------hdQAmaaY 369 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTLDP------TFGPAWLAFGHSFAGEGE--------------------HDQAMAAY 369 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhcCc------cccHHHHHHhHHhhhcch--------------------HHHHHHHH
Confidence 9999999999999999999999998877 667799999999999999 99999999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q psy10738 184 EQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHY 263 (609)
Q Consensus 184 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 263 (609)
..|-++++...- -...+|.-|...++++-|..+|.+|+.++|..+- ++..+|.+.+..+.|.+|..+|
T Consensus 370 ~tAarl~~G~hl------P~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dpl------v~~Elgvvay~~~~y~~A~~~f 437 (611)
T KOG1173|consen 370 FTAARLMPGCHL------PSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPL------VLHELGVVAYTYEEYPEALKYF 437 (611)
T ss_pred HHHHHhccCCcc------hHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcch------hhhhhhheeehHhhhHHHHHHH
Confidence 999988755433 3567899999999999999999999999987765 8889999999999999999999
Q ss_pred HHHHHHHHHcCCcH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHH
Q psy10738 264 KRTLVLAQDLGDRA-VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYF 342 (609)
Q Consensus 264 ~~al~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~ 342 (609)
+.++...+...... .....+.+||.+|.+++.+++|+.++++++.+.++ .+.++..+|-+|..+|+++.|+.+
T Consensus 438 ~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k------~~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 438 QKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK------DASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred HHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC------chhHHHHHHHHHHHhcChHHHHHH
Confidence 99997777664332 24557899999999999999999999999998776 456899999999999999999999
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHH
Q psy10738 343 ATKHLEISKQLGDPLGQVTAQMNVTDLR 370 (609)
Q Consensus 343 ~~~al~l~~~~~~~~~~~~a~~~la~l~ 370 (609)
|.+|+.+. +....+...|+...
T Consensus 512 fhKaL~l~------p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 512 FHKALALK------PDNIFISELLKLAI 533 (611)
T ss_pred HHHHHhcC------CccHHHHHHHHHHH
Confidence 99999876 44444444444333
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=5.5e-17 Score=183.94 Aligned_cols=229 Identities=13% Similarity=0.011 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~ 141 (609)
+|+.+|.++.. +++.+|+..+.+++... +. ......+|.++...|++++|+.+|++++...+ . ..
T Consensus 479 a~~~LG~~l~~-~~~~eAi~a~~~Al~~~------Pd-~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p---~----~~ 543 (987)
T PRK09782 479 AWNRLAKCYRD-TLPGVALYAWLQAEQRQ------PD-AWQHRAVAYQAYQVEDYATALAAWQKISLHDM---S----NE 543 (987)
T ss_pred HHHHHHHHHHh-CCcHHHHHHHHHHHHhC------Cc-hHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC---C----cH
Confidence 45555555544 45555555555544441 11 11233334444455555555555554322211 0 11
Q ss_pred HHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy10738 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIY 221 (609)
Q Consensus 142 ~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 221 (609)
.+..+|.++...|+ +++|+.++++++... +.....+..++......|++++|+.
T Consensus 544 a~~~la~all~~Gd--------------------~~eA~~~l~qAL~l~------P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 544 DLLAAANTAQAAGN--------------------GAARDRWLQQAEQRG------LGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HHHHHHHHHHHCCC--------------------HHHHHHHHHHHHhcC------CccHHHHHHHHHHHHhCCCHHHHHH
Confidence 23444555555555 555555555554431 1112222233333334455555555
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHH
Q psy10738 222 YHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 301 (609)
Q Consensus 222 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 301 (609)
.+++++++.+. ..++.++|.++...|++++|+..|++++.+.+.. ..++.++|.++...|++++|+.
T Consensus 598 ~~~~AL~l~P~-------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~------~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 598 DLTRSLNIAPS-------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNN------SNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred HHHHHHHhCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHH
Confidence 55555544331 1244455555555555555555555555544432 3445555555555555555555
Q ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 302 YHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 302 ~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
.|++++++.+. ...+++++|.++..+|++++|+.++++++++.
T Consensus 665 ~l~~AL~l~P~------~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 665 MLERAHKGLPD------DPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 55555544332 22345555555555555555555555555444
No 30
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=2.9e-16 Score=177.66 Aligned_cols=328 Identities=13% Similarity=-0.010 Sum_probs=224.9
Q ss_pred hhhhhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHH
Q psy10738 3 VGNISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAY 70 (609)
Q Consensus 3 l~~Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~ 70 (609)
+.++|.++...|++.+|..++..++. |.++...|++++|+..++++++..|++. . +..+|.++
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~----~-~~~la~~l 126 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKA----N-LLALAYVY 126 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----H-HHHHHHHH
Confidence 45667777777777777766665444 5566677777777777777777777663 2 56667777
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------
Q psy10738 71 FYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLE---------------------- 128 (609)
Q Consensus 71 ~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---------------------- 128 (609)
...|++++|+..++++++. .|....++..+|.++...|..++|+..++++..
T Consensus 127 ~~~g~~~~Al~~l~~al~~------~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~ 200 (765)
T PRK10049 127 KRAGRHWDELRAMTQALPR------APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFM 200 (765)
T ss_pred HHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 7777777777777777777 555666666677777666666666655553221
Q ss_pred ------------------------HHHHcCC-cHHHHHHHHH-HHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHH
Q psy10738 129 ------------------------ISRQLND-KLSEGRALYN-LGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182 (609)
Q Consensus 129 ------------------------l~~~~~d-~~~~~~~~~~-lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 182 (609)
..+...+ ......+... ++. +...|+ +++|+..
T Consensus 201 ~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~-Ll~~g~--------------------~~eA~~~ 259 (765)
T PRK10049 201 PTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA-LLARDR--------------------YKDVISE 259 (765)
T ss_pred cccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH-HHHhhh--------------------HHHHHHH
Confidence 0000000 0011111111 222 234455 8888888
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Q psy10738 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEH 262 (609)
Q Consensus 183 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 262 (609)
|+++++.. ...+..+ ...+|.+|..+|++++|+.+|++++...+.... ........++.++...|++++|+.+
T Consensus 260 ~~~ll~~~---~~~P~~a--~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~--~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 260 YQRLKAEG---QIIPPWA--QRWVASAYLKLHQPEKAQSILTELFYHPETIAD--LSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHhhccC---CCCCHHH--HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCC--CChHHHHHHHHHHHhcccHHHHHHH
Confidence 88866541 1113222 333688999999999999999998864322211 0113556777788999999999999
Q ss_pred HHHHHHHHHHcC--------CcH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHc
Q psy10738 263 YKRTLVLAQDLG--------DRA-VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAAR 333 (609)
Q Consensus 263 ~~~al~~~~~~~--------~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~ 333 (609)
++++....+... .+. ....++..+|.++...|++++|+..+++++...+.. ..++..+|.++...
T Consensus 333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n------~~l~~~lA~l~~~~ 406 (765)
T PRK10049 333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN------QGLRIDYASVLQAR 406 (765)
T ss_pred HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhc
Confidence 999887654210 111 234567889999999999999999999998876553 45899999999999
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 334 GNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 334 g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
|++++|+..+++++.+. +....++..++.++..+|+...|..
T Consensus 407 g~~~~A~~~l~~al~l~------Pd~~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 407 GWPRAAENELKKAEVLE------PRNINLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred CCHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999976 5667788899999999998766543
No 31
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.76 E-value=1.3e-16 Score=181.05 Aligned_cols=283 Identities=11% Similarity=0.017 Sum_probs=231.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
...|.++.. |++.+|+..|.+++...|++. ....+|.++...|++++|+..+++++.. .+. ...+..
T Consensus 481 ~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-----~~L~lA~al~~~Gr~eeAi~~~rka~~~------~p~-~~a~~~ 547 (987)
T PRK09782 481 NRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-----QHRAVAYQAYQVEDYATALAAWQKISLH------DMS-NEDLLA 547 (987)
T ss_pred HHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-----HHHHHHHHHHHCCCHHHHHHHHHHHhcc------CCC-cHHHHH
Confidence 445777766 899999999999999998742 3566777778999999999999987554 222 234678
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
+|.++...|++++|+.+|.+++...+ .....+..++......|+ +++|+..+++
T Consensus 548 la~all~~Gd~~eA~~~l~qAL~l~P------~~~~l~~~La~~l~~~Gr--------------------~~eAl~~~~~ 601 (987)
T PRK09782 548 AANTAQAAGNGAARDRWLQQAEQRGL------GDNALYWWLHAQRYIPGQ--------------------PELALNDLTR 601 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHhCCC--------------------HHHHHHHHHH
Confidence 89999999999999999999998643 223445556666667799 9999999999
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 186 NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR 265 (609)
Q Consensus 186 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 265 (609)
++++. +. ..++.++|.++...|++++|+.++++++.+.+.... ++.++|.++...|++++|+..|++
T Consensus 602 AL~l~------P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~------a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 602 SLNIA------PS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN------YQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHhC------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99873 33 568899999999999999999999999998766543 899999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy10738 266 TLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATK 345 (609)
Q Consensus 266 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~ 345 (609)
++++.+.. +.+++++|.++...|++++|+.++++++.+.+. .+.+....|.+.....++..|.+.+.+
T Consensus 669 AL~l~P~~------~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~------~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 669 AHKGLPDD------PALIRQLAYVNQRLDDMAATQHYARLVIDDIDN------QALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred HHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------CchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99987754 778999999999999999999999999988765 344777788888888888888888777
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCC
Q psy10738 346 HLEISKQLGDPLGQVTAQMNVTDLRKALGMSTND 379 (609)
Q Consensus 346 al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~a 379 (609)
+..+. +... +....++++...+++-.+
T Consensus 737 ~~~~~------~~~~-a~~~~g~~~~~~~~~~~~ 763 (987)
T PRK09782 737 RWTFS------FDSS-IGLRSGAMSTANNNVGGA 763 (987)
T ss_pred HhhcC------ccch-hccccchHhhhcccccCC
Confidence 77654 2222 888888888888876544
No 32
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=4.8e-16 Score=175.85 Aligned_cols=344 Identities=13% Similarity=0.033 Sum_probs=243.8
Q ss_pred hHhhhcCCCcchhHHHHH------------HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCC
Q psy10738 8 SSDSQSGGADGGNMCLEL------------ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGD 75 (609)
Q Consensus 8 ~~~~~~g~~~~a~~~~~l------------~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~ 75 (609)
.+....|+..+++..+.. ...|..+...|++++|+.+|+++++..|.++. ++..+|.++...|+
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~----a~~~la~~l~~~g~ 98 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD----YQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHCCC
Confidence 344555666666554443 33478899999999999999999999998854 67799999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccc
Q psy10738 76 YQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK 155 (609)
Q Consensus 76 ~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~ 155 (609)
+++|+..++++++. .|.... +..+|.++...|++++|+..+++++++.+ ....++..+|.++...|.
T Consensus 99 ~~eA~~~l~~~l~~------~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P------~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 99 YDEALVKAKQLVSG------APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP------QTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHHHHHHh------CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCC
Confidence 99999999999998 666677 99999999999999999999999999877 445566777888877666
Q ss_pred ccccCCCCC-CCCCchH-------------------------hHHhHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHH
Q psy10738 156 AIGKVGQQD-PGEYPEE-------------------------VKVCLQEAIKYYEQNLALMKEIND-TAAQGRACGNLGN 208 (609)
Q Consensus 156 ~~~~~~~~~-~~~~~~~-------------------------~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~ 208 (609)
...+....+ ....|.. .....++|+..++.+++......+ .+....+......
T Consensus 166 ~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 166 SAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 221111000 0000000 000114555555555544332221 2233344443233
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q psy10738 209 TYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGN 288 (609)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 288 (609)
.++..|++++|+..|+++++..+.. +.. +...+|.+|...|++++|+.+|++++...+.. ..........++.
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~--P~~---a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~--~~~~~~~~~~L~~ 318 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQII--PPW---AQRWVASAYLKLHQPEKAQSILTELFYHPETI--ADLSDEELADLFY 318 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCC--CHH---HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCC--CCCChHHHHHHHH
Confidence 4467799999999999987653211 111 33346889999999999999999987643221 0111245566777
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhc--------chh-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchH
Q psy10738 289 TYTLLRDYPTAIDYHLRHLIIAQQLM--------DRV-GEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQ 359 (609)
Q Consensus 289 ~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~-~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~ 359 (609)
++...|++++|+.+++++....+... .+. ....++..+|.++...|++++|+..+++++... +..
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~------P~n 392 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA------PGN 392 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCC
Confidence 88999999999999999887654211 011 234577889999999999999999999998875 566
Q ss_pred HHHHHHHHHHHHHcCCCCCCCC
Q psy10738 360 VTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 360 ~~a~~~la~l~~~~g~~~~al~ 381 (609)
..++..+|.++...|++..|+.
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~ 414 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAEN 414 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHH
Confidence 7899999999999999877654
No 33
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.75 E-value=1.3e-14 Score=169.16 Aligned_cols=308 Identities=14% Similarity=0.052 Sum_probs=249.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCc-----chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 27 LEGERLCKAGDCRAGVAFFQAAIQAGTD-----DLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 27 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
..+..+...|++++|...+..+....+. ++.....+...+|.++...|++++|..++++++..... .+......
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~ 492 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL-TWYYSRIV 492 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-ccHHHHHH
Confidence 3477788899999999999998775332 23345566677899999999999999999999875322 22333556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHH
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~ 181 (609)
+...+|.++...|++++|..++.+++......++......++.++|.++...|+ ++.|..
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~--------------------~~~A~~ 552 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF--------------------LQAAYE 552 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC--------------------HHHHHH
Confidence 778899999999999999999999999999888877778889999999999999 999999
Q ss_pred HHHHHHHHHHHhCCh--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 182 YYEQNLALMKEINDT--AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAA 259 (609)
Q Consensus 182 ~~~~al~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 259 (609)
++++++.+....+.. .....++..+|.+++..|++++|...+.+++.+....+. .....++..+|.++...|+++.|
T Consensus 553 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~G~~~~A 631 (903)
T PRK04841 553 TQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP-QQQLQCLAMLAKISLARGDLDNA 631 (903)
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc-hHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999998876432 333455678899999999999999999999998876543 33456778899999999999999
Q ss_pred HHHHHHHHHHHHHcCCcH---------------------------------------HHHHHHHHHHHHHHHhCCHHHHH
Q psy10738 260 SEHYKRTLVLAQDLGDRA---------------------------------------VEAQACYSLGNTYTLLRDYPTAI 300 (609)
Q Consensus 260 ~~~~~~al~~~~~~~~~~---------------------------------------~~~~~~~~la~~~~~~g~~~~A~ 300 (609)
...+.++..+....+... .....+..+|.++...|++++|.
T Consensus 632 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 711 (903)
T PRK04841 632 RRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAE 711 (903)
T ss_pred HHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999877654322100 00111346788888999999999
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCC
Q psy10738 301 DYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDP 356 (609)
Q Consensus 301 ~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 356 (609)
..+.+++......+.......++..+|.++...|+.++|..++.+|++++...+..
T Consensus 712 ~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~~ 767 (903)
T PRK04841 712 IILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGFI 767 (903)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccchh
Confidence 99999999888877777788888999999999999999999999999998777654
No 34
>KOG2076|consensus
Probab=99.75 E-value=1.2e-15 Score=161.73 Aligned_cols=311 Identities=17% Similarity=0.182 Sum_probs=233.1
Q ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhh
Q psy10738 19 GNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLG 98 (609)
Q Consensus 19 a~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~ 98 (609)
+.....++-+|..++..|++++|..++.++|..+|.++. +|+.||.+|..+|+.+++...+-.|-.+ .+.
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~----ay~tL~~IyEqrGd~eK~l~~~llAAHL------~p~ 205 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI----AYYTLGEIYEQRGDIEKALNFWLLAAHL------NPK 205 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh----hHHHHHHHHHHcccHHHHHHHHHHHHhc------CCC
Confidence 444677888899999999999999999999999998754 8999999999999999999998888777 566
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHH
Q psy10738 99 EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQE 178 (609)
Q Consensus 99 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 178 (609)
....|..++.....+|++.+|.-||.+|+...+ ......+..+.+|...|+ +..
T Consensus 206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p------~n~~~~~ers~L~~~~G~--------------------~~~ 259 (895)
T KOG2076|consen 206 DYELWKRLADLSEQLGNINQARYCYSRAIQANP------SNWELIYERSSLYQKTGD--------------------LKR 259 (895)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC------cchHHHHHHHHHHHHhCh--------------------HHH
Confidence 668999999999999999999999999999877 446678899999999999 999
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHH
Q psy10738 179 AIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQA 258 (609)
Q Consensus 179 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 258 (609)
|...|.+.+.+.... +....-..-...+..+...++-+.|++.++.++...... .....+..++.+++....++.
T Consensus 260 Am~~f~~l~~~~p~~-d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~----~~~ed~ni~ael~l~~~q~d~ 334 (895)
T KOG2076|consen 260 AMETFLQLLQLDPPV-DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE----ASLEDLNILAELFLKNKQSDK 334 (895)
T ss_pred HHHHHHHHHhhCCch-hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc----ccccHHHHHHHHHHHhHHHHH
Confidence 999998888775411 111111222334556666666677777777776621110 001123344444554444444
Q ss_pred HHHHHHHHHH---------------------------------------------------------HH-HHcCCcHHHH
Q psy10738 259 ASEHYKRTLV---------------------------------------------------------LA-QDLGDRAVEA 280 (609)
Q Consensus 259 A~~~~~~al~---------------------------------------------------------~~-~~~~~~~~~~ 280 (609)
|......-.. .. ...-......
T Consensus 335 ~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~ 414 (895)
T KOG2076|consen 335 ALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDV 414 (895)
T ss_pred hhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhH
Confidence 4443322211 00 0000123346
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHH
Q psy10738 281 QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQV 360 (609)
Q Consensus 281 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 360 (609)
..+..++.+|...|+|.+|+.++...... .....+.+|+.+|.||..+|.+++|+.+|++++.+. +...
T Consensus 415 dL~~d~a~al~~~~~~~~Al~~l~~i~~~-----~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~------p~~~ 483 (895)
T KOG2076|consen 415 DLYLDLADALTNIGKYKEALRLLSPITNR-----EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA------PDNL 483 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhcC-----ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC------CCch
Confidence 67889999999999999999999876542 233347799999999999999999999999999987 7888
Q ss_pred HHHHHHHHHHHHcCCCCCCCC
Q psy10738 361 TAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 361 ~a~~~la~l~~~~g~~~~al~ 381 (609)
.++..|+.++..+|++++|+.
T Consensus 484 D~Ri~Lasl~~~~g~~EkalE 504 (895)
T KOG2076|consen 484 DARITLASLYQQLGNHEKALE 504 (895)
T ss_pred hhhhhHHHHHHhcCCHHHHHH
Confidence 999999999999999987643
No 35
>PRK12370 invasion protein regulator; Provisional
Probab=99.74 E-value=5.7e-16 Score=168.96 Aligned_cols=268 Identities=15% Similarity=0.064 Sum_probs=209.1
Q ss_pred chhHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHh---------CCHHHHHHHHHH
Q psy10738 18 GGNMCLELALEGERLCKA---GDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYL---------GDYQKAMQYHKQ 85 (609)
Q Consensus 18 ~a~~~~~l~~~g~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~---------g~~~~A~~~~~~ 85 (609)
.+...+.++++|...... +++++|+.+|++|++.+|++.. ++..+|.+|... +++++|+..+++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~----a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIA----PYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHH----HHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 445666788888766543 4578999999999999998743 677788777644 348999999999
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCC
Q psy10738 86 DLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDP 165 (609)
Q Consensus 86 al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~ 165 (609)
++++ .|..+.++..+|.++...|++++|+.+|++++++.+ ..+.+++.+|.++...|+
T Consensus 330 Al~l------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P------~~~~a~~~lg~~l~~~G~---------- 387 (553)
T PRK12370 330 ATEL------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP------ISADIKYYYGWNLFMAGQ---------- 387 (553)
T ss_pred HHhc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCC----------
Confidence 9999 788899999999999999999999999999999977 566789999999999999
Q ss_pred CCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Q psy10738 166 GEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSN 245 (609)
Q Consensus 166 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 245 (609)
+++|+..+++++++. +....++..++.+++..|++++|+..+++++...+.. ...++.+
T Consensus 388 ----------~~eAi~~~~~Al~l~------P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~-----~~~~~~~ 446 (553)
T PRK12370 388 ----------LEEALQTINECLKLD------PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQD-----NPILLSM 446 (553)
T ss_pred ----------HHHHHHHHHHHHhcC------CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcccc-----CHHHHHH
Confidence 999999999999883 2223344556667888999999999999987654211 1226788
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q psy10738 246 LGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWS 325 (609)
Q Consensus 246 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 325 (609)
+|.++..+|++++|...+.+.....+. ...+...++.+|...| ++|...+++.++....... -...
T Consensus 447 la~~l~~~G~~~eA~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~------~~~~ 512 (553)
T PRK12370 447 QVMFLSLKGKHELARKLTKEISTQEIT------GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN------NPGL 512 (553)
T ss_pred HHHHHHhCCCHHHHHHHHHHhhhccch------hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc------CchH
Confidence 999999999999999999886554433 3456677888888888 4888888886665544222 2223
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q psy10738 326 LGNAHAARGNHEKALYFATKHL 347 (609)
Q Consensus 326 La~~~~~~g~~~~A~~~~~~al 347 (609)
++.+|.-.|+.+.|..+ +++.
T Consensus 513 ~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 513 LPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred HHHHHHHHhhhHHHHHH-HHhh
Confidence 78888888988888776 5443
No 36
>KOG2003|consensus
Probab=99.73 E-value=4.4e-16 Score=152.46 Aligned_cols=285 Identities=21% Similarity=0.187 Sum_probs=238.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLG--DYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
++-.+.+.|+++.|++.++-.-.. |......+-.+|...++.+| ++..|..|...++.+ +...+.++.+
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~k---dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~------dryn~~a~~n 495 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKK---DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI------DRYNAAALTN 495 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhc---cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc------cccCHHHhhc
Confidence 477889999999999987654332 33344556677777777754 788999999999988 7778899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
.|++.+..|++++|.+.|.+++.-.. ....+++++|..+..+|+ +++|+++|-+
T Consensus 496 kgn~~f~ngd~dka~~~ykeal~nda------sc~ealfniglt~e~~~~--------------------ldeald~f~k 549 (840)
T KOG2003|consen 496 KGNIAFANGDLDKAAEFYKEALNNDA------SCTEALFNIGLTAEALGN--------------------LDEALDCFLK 549 (840)
T ss_pred CCceeeecCcHHHHHHHHHHHHcCch------HHHHHHHHhcccHHHhcC--------------------HHHHHHHHHH
Confidence 99999999999999999999986544 677899999999999999 9999999988
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 186 NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR 265 (609)
Q Consensus 186 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 265 (609)
.-.+. ...+.++..++++|..+.+..+|++++.++..+.+..+. ++..||.+|-..|+-.+|..++-.
T Consensus 550 lh~il------~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~------ilskl~dlydqegdksqafq~~yd 617 (840)
T KOG2003|consen 550 LHAIL------LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPA------ILSKLADLYDQEGDKSQAFQCHYD 617 (840)
T ss_pred HHHHH------HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHH------HHHHHHHHhhcccchhhhhhhhhh
Confidence 77764 344678999999999999999999999999887765443 788999999999999999999988
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy10738 266 TLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATK 345 (609)
Q Consensus 266 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~ 345 (609)
....++.. ..+..+||..|....=+++|+.||+++--+.+. .......++.|+.+.|+|.+|...|+.
T Consensus 618 syryfp~n------ie~iewl~ayyidtqf~ekai~y~ekaaliqp~------~~kwqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 618 SYRYFPCN------IETIEWLAAYYIDTQFSEKAINYFEKAALIQPN------QSKWQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred cccccCcc------hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc------HHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 88877754 567778999999999999999999998766554 344566789999999999999999988
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHcCCCC
Q psy10738 346 HLEISKQLGDPLGQVTAQMNVTDLRKALGMST 377 (609)
Q Consensus 346 al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~ 377 (609)
...-+ +....++.-|.++.-.+|..+
T Consensus 686 ~hrkf------pedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 686 IHRKF------PEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHhC------ccchHHHHHHHHHhccccchh
Confidence 77655 566788888888888888743
No 37
>KOG0548|consensus
Probab=99.72 E-value=2.2e-15 Score=151.78 Aligned_cols=329 Identities=21% Similarity=0.252 Sum_probs=240.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
++-.+|...+..|+|+.|+.+|..|+.++|.+.- .|.+...+|..+|+|++|++-..+.+++ .|..+..|
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhv----lySnrsaa~a~~~~~~~al~da~k~~~l------~p~w~kgy 73 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHV----LYSNRSAAYASLGSYEKALKDATKTRRL------NPDWAKGY 73 (539)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHccCCCccc----hhcchHHHHHHHhhHHHHHHHHHHHHhc------CCchhhHH
Confidence 4556799999999999999999999999998744 7889999999999999999999999999 89999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc-HHHHH-----------------------------------------
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDK-LSEGR----------------------------------------- 141 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~-~~~~~----------------------------------------- 141 (609)
..+|..+.-+|+|++|+..|.+.|+..+..... .+...
T Consensus 74 ~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 74 SRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred HHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 999999999999999999999998764421000 00000
Q ss_pred -----------------HHHHHHHHHHH------cccccccCCCCCC-----------CCCchH----------------
Q psy10738 142 -----------------ALYNLGNVYHA------KGKAIGKVGQQDP-----------GEYPEE---------------- 171 (609)
Q Consensus 142 -----------------~~~~lg~~~~~------~g~~~~~~~~~~~-----------~~~~~~---------------- 171 (609)
....+|.+... .+.........+| ++..++
T Consensus 154 ~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgna 233 (539)
T KOG0548|consen 154 IIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNA 233 (539)
T ss_pred HhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHH
Confidence 00001111000 0000000000111 111110
Q ss_pred --hHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-ChHHHHHHHHHHHH
Q psy10738 172 --VKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFG-DKAAERRANSNLGN 248 (609)
Q Consensus 172 --~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~ 248 (609)
...++..|++.|..++++. ..+..+.+.+-+|+..|.+.+.+....++++.-.+.. +...++.++..+|.
T Consensus 234 aykkk~f~~a~q~y~~a~el~-------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 234 AYKKKDFETAIQHYAKALELA-------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHhhhHHHHHHHHHHHHhHh-------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 1356778888888888874 3345678889999999999999998888877655532 22335667777899
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCC--------------------cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy10738 249 SHIFLGEYQAASEHYKRTLVLAQDLGD--------------------RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 308 (609)
Q Consensus 249 ~~~~~g~~~~A~~~~~~al~~~~~~~~--------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 308 (609)
.|...++++.|+.+|.+++...+.-.. ....+.--..-|+.++..|+|..|+.+|.+|+.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 999999999999999998875443100 011133334568999999999999999999887
Q ss_pred HHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 309 IAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 309 ~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
..++ .+..|.+.|.||.++|++..|+...++++++. +....++..-|.++..+.++.+++.
T Consensus 387 r~P~------Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~------p~~~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 387 RDPE------DARLYSNRAACYLKLGEYPEALKDAKKCIELD------PNFIKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred cCCc------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6543 67799999999999999999999999999883 6777888888888888877666553
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=4e-17 Score=163.08 Aligned_cols=263 Identities=22% Similarity=0.263 Sum_probs=110.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAG--TDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
.|..++..|++++|++++.+.+... |+++ ..|..+|.+....++++.|+..|++.+.. .+.....+..
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~----~~~~~~a~La~~~~~~~~A~~ay~~l~~~------~~~~~~~~~~ 83 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDP----EYWRLLADLAWSLGDYDEAIEAYEKLLAS------DKANPQDYER 83 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc----ccccccccccccccccccccccccccccc------cccccccccc
Confidence 3899999999999999997766543 5554 47788999999999999999999999887 4445666777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
++.+ ...+++++|+.+++++.+..+ ....+.....++...|+ ++++...+++
T Consensus 84 l~~l-~~~~~~~~A~~~~~~~~~~~~-------~~~~l~~~l~~~~~~~~--------------------~~~~~~~l~~ 135 (280)
T PF13429_consen 84 LIQL-LQDGDPEEALKLAEKAYERDG-------DPRYLLSALQLYYRLGD--------------------YDEAEELLEK 135 (280)
T ss_dssp ------------------------------------------H-HHHTT---------------------HHHHHHHHHH
T ss_pred cccc-ccccccccccccccccccccc-------ccchhhHHHHHHHHHhH--------------------HHHHHHHHHH
Confidence 7777 789999999999988766432 22345566677888899 9999999888
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 186 NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR 265 (609)
Q Consensus 186 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 265 (609)
+... ...+.....+..+|.++...|++++|+.+++++++..|...+ +...++.+++..|+++++...+..
T Consensus 136 ~~~~----~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~------~~~~l~~~li~~~~~~~~~~~l~~ 205 (280)
T PF13429_consen 136 LEEL----PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD------ARNALAWLLIDMGDYDEAREALKR 205 (280)
T ss_dssp HHH-----T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH------HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhc----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHCCChHHHHHHHHH
Confidence 6642 212344678899999999999999999999999999876554 777899999999999998888888
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy10738 266 TLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATK 345 (609)
Q Consensus 266 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~ 345 (609)
.....+.. ...+..+|.+|..+|++++|+.++++++...+. ...++..+|.++...|+.++|..++.+
T Consensus 206 ~~~~~~~~------~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~------d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 206 LLKAAPDD------PDLWDALAAAYLQLGRYEEALEYLEKALKLNPD------DPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHH-HTS------CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-------HHHHHHHHHHHT--------------
T ss_pred HHHHCcCH------HHHHHHHHHHhcccccccccccccccccccccc------ccccccccccccccccccccccccccc
Confidence 77766443 336678899999999999999999998876543 456888999999999999999999999
Q ss_pred HHHHH
Q psy10738 346 HLEIS 350 (609)
Q Consensus 346 al~l~ 350 (609)
++...
T Consensus 274 ~~~~l 278 (280)
T PF13429_consen 274 ALRLL 278 (280)
T ss_dssp -----
T ss_pred ccccc
Confidence 88754
No 39
>KOG1173|consensus
Probab=99.70 E-value=7.7e-16 Score=155.48 Aligned_cols=234 Identities=21% Similarity=0.292 Sum_probs=206.6
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q psy10738 31 RLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTL 110 (609)
Q Consensus 31 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~ 110 (609)
+++..|+..+=..+-.+.++..|..+ ..|+.+|..|...|++.+|..++.++..+ ++..+.+|...|..+
T Consensus 287 ~l~el~~~n~Lf~lsh~LV~~yP~~a----~sW~aVg~YYl~i~k~seARry~SKat~l------D~~fgpaWl~fghsf 356 (611)
T KOG1173|consen 287 CLYELGKSNKLFLLSHKLVDLYPSKA----LSWFAVGCYYLMIGKYSEARRYFSKATTL------DPTFGPAWLAFGHSF 356 (611)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCC----cchhhHHHHHHHhcCcHHHHHHHHHHhhc------CccccHHHHHHhHHh
Confidence 78888888887777788888888764 47899999999999999999999999999 888999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH
Q psy10738 111 KVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 111 ~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 190 (609)
...|..++|+.+|..|-++.+ +...-...+|.-|...++ +.-|..+|.+|+.++
T Consensus 357 a~e~EhdQAmaaY~tAarl~~------G~hlP~LYlgmey~~t~n--------------------~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 357 AGEGEHDQAMAAYFTAARLMP------GCHLPSLYLGMEYMRTNN--------------------LKLAEKFFKQALAIA 410 (611)
T ss_pred hhcchHHHHHHHHHHHHHhcc------CCcchHHHHHHHHHHhcc--------------------HHHHHHHHHHHHhcC
Confidence 999999999999999999988 333456778999999999 999999999999995
Q ss_pred HHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 191 KEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKA-AERRANSNLGNSHIFLGEYQAASEHYKRTLVL 269 (609)
Q Consensus 191 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 269 (609)
|....++..+|.+.+..+.|.+|..+|+.++...+...... ...-.+.|||.++.+++.+++|+.++++++.+
T Consensus 411 ------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 411 ------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred ------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 44456889999999999999999999999997777654433 23457899999999999999999999999999
Q ss_pred HHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 270 AQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 270 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 312 (609)
.+.. +.++..+|.+|..+|+++.|+++|.+++.+.+.
T Consensus 485 ~~k~------~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 485 SPKD------ASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred CCCc------hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 8874 788999999999999999999999999988654
No 40
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.70 E-value=3.5e-14 Score=147.20 Aligned_cols=326 Identities=16% Similarity=0.066 Sum_probs=228.8
Q ss_pred CchhhhhhHhhhcCCCcchhHHHH---------------HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHH
Q psy10738 1 MSVGNISSSDSQSGGADGGNMCLE---------------LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQ 65 (609)
Q Consensus 1 m~l~~Lg~~~~~~g~~~~a~~~~~---------------l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~ 65 (609)
|++..+|..+...|+.+.+...+. .+.+|..+...|++++|...++++++..|.+.. ++..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~----a~~~ 82 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLL----ALKL 82 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH----HHHH
Confidence 355667777777776666443333 334478899999999999999999999998863 3333
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q psy10738 66 LGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYN 145 (609)
Q Consensus 66 lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~ 145 (609)
+..++..|++..+.....+++.. .....+....++..+|.++...|++++|+..+++++++.+ ....++..
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p------~~~~~~~~ 153 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP------DDAWAVHA 153 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCcHHHHH
Confidence 66666666665555555555544 3344667778888999999999999999999999999876 33668899
Q ss_pred HHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10738 146 LGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQE 225 (609)
Q Consensus 146 lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 225 (609)
+|.++...|+ +++|+.++++++...+. +.......+..+|.++...|++++|+..+++
T Consensus 154 la~i~~~~g~--------------------~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 154 VAHVLEMQGR--------------------FKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHcCC--------------------HHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999 99999999999887543 2233345678899999999999999999999
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 226 RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLR 305 (609)
Q Consensus 226 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 305 (609)
++...+. ............+...+...|....+..+ +.+................-...+.++...|+.++|...+..
T Consensus 212 ~~~~~~~-~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~ 289 (355)
T cd05804 212 HIAPSAE-SDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAA 289 (355)
T ss_pred HhccccC-CChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 8643321 11111110111222333344443333332 222222211111111222224678888999999999999999
Q ss_pred HHHHHHH---hcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHH
Q psy10738 306 HLIIAQQ---LMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQ 363 (609)
Q Consensus 306 al~~~~~---~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~ 363 (609)
....... .+.......+....|.++...|++++|...+..++.+...+|....+..+.
T Consensus 290 l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~aq~~~~ 350 (355)
T cd05804 290 LKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSHAQRDVF 350 (355)
T ss_pred HHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 8887766 444555677788899999999999999999999999999999876665554
No 41
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.69 E-value=1.5e-13 Score=160.21 Aligned_cols=327 Identities=12% Similarity=-0.019 Sum_probs=254.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHH-hCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC---ChhhHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQ-AGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNME---DKLGEAKSSG 104 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---d~~~~~~a~~ 104 (609)
|..+...|++..+..++..+-. ....++ .+....+.++...|++++|..++..+.......+ +......+..
T Consensus 381 a~~l~~~g~~~~l~~~l~~lp~~~~~~~~----~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 456 (903)
T PRK04841 381 GWSLFNQGELSLLEECLNALPWEVLLENP----RLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNA 456 (903)
T ss_pred HHHHHhcCChHHHHHHHHhCCHHHHhcCc----chHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHH
Confidence 5566666777665555544310 011122 2345678888899999999999998877654332 2233456667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYE 184 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 184 (609)
.+|.++...|++++|..++++++...+. .+......+...+|.++...|+ +++|..++.
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~G~--------------------~~~A~~~~~ 515 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPL-TWYYSRIVATSVLGEVHHCKGE--------------------LARALAMMQ 515 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHH
Confidence 7899999999999999999999875332 2333455677899999999999 999999999
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCh--HHHHHHHHHHHHHHHHhCCHHHHHHH
Q psy10738 185 QNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDK--AAERRANSNLGNSHIFLGEYQAASEH 262 (609)
Q Consensus 185 ~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~ 262 (609)
+++......+.......++.++|.++...|++++|..++.+++.+....+.. .....++..+|.++...|++++|...
T Consensus 516 ~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 595 (903)
T PRK04841 516 QTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQC 595 (903)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999888877778899999999999999999999999999998876432 22344567889999999999999999
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchh-------------------------
Q psy10738 263 YKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRV------------------------- 317 (609)
Q Consensus 263 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------- 317 (609)
+.+++.+....+ ......++..+|.++...|++++|...+.++..+....+...
T Consensus 596 ~~~al~~~~~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 674 (903)
T PRK04841 596 ARKGLEVLSNYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAAN 674 (903)
T ss_pred HHHhHHhhhccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHH
Confidence 999999887554 333456777899999999999999999999877654322100
Q ss_pred --------------hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 318 --------------GEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 318 --------------~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
.....+..++.++...|++++|...+++++...+..+.......++..++.++...|++..|..
T Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~ 752 (903)
T PRK04841 675 WLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQR 752 (903)
T ss_pred HHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 0011135788899999999999999999999999999888888999999999999999776654
No 42
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.68 E-value=7.2e-15 Score=147.33 Aligned_cols=226 Identities=16% Similarity=0.048 Sum_probs=173.1
Q ss_pred hcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q psy10738 34 KAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVM 113 (609)
Q Consensus 34 ~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~ 113 (609)
..+..+.++..+.+++...+-++...+..|+.+|.+|...|++++|+..|++++++ .|..+.++.++|.++...
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l------~P~~~~a~~~lg~~~~~~ 111 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL------RPDMADAYNYLGIYLTQA 111 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHC
Confidence 34677889999999998777677777889999999999999999999999999998 778899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh
Q psy10738 114 GKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI 193 (609)
Q Consensus 114 g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 193 (609)
|++++|+..|++++++.+ ....++.++|.++...|+ +++|+..+++++.+.+.
T Consensus 112 g~~~~A~~~~~~Al~l~P------~~~~a~~~lg~~l~~~g~--------------------~~eA~~~~~~al~~~P~- 164 (296)
T PRK11189 112 GNFDAAYEAFDSVLELDP------TYNYAYLNRGIALYYGGR--------------------YELAQDDLLAFYQDDPN- 164 (296)
T ss_pred CCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHhCCC-
Confidence 999999999999999877 456789999999999999 99999999999986322
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HH
Q psy10738 194 NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV---LA 270 (609)
Q Consensus 194 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~ 270 (609)
.+. ...+ ..+....+++++|+..+.+++.... .+ .+ ..+.++...|++..+ ..+..+.. ..
T Consensus 165 --~~~-~~~~---~~l~~~~~~~~~A~~~l~~~~~~~~--~~------~~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~ 228 (296)
T PRK11189 165 --DPY-RALW---LYLAESKLDPKQAKENLKQRYEKLD--KE------QW-GWNIVEFYLGKISEE-TLMERLKAGATDN 228 (296)
T ss_pred --CHH-HHHH---HHHHHccCCHHHHHHHHHHHHhhCC--cc------cc-HHHHHHHHccCCCHH-HHHHHHHhcCCCc
Confidence 121 1111 1234457889999999987663321 11 11 134555566766443 23333321 11
Q ss_pred HHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy10738 271 QDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 310 (609)
Q Consensus 271 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 310 (609)
.+. ......+|+.+|.++...|++++|+.+|++++.+.
T Consensus 229 ~~l--~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 229 TEL--AERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 111 11246789999999999999999999999999765
No 43
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.67 E-value=5.9e-15 Score=142.44 Aligned_cols=205 Identities=20% Similarity=0.210 Sum_probs=166.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q psy10738 56 LRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLND 135 (609)
Q Consensus 56 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d 135 (609)
....+.++..+|.++...|++++|+..+++++.. .+....++..+|.++...|++++|+.++++++...+
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---- 96 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP---- 96 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----
Confidence 3345678899999999999999999999999877 566678889999999999999999999999988755
Q ss_pred cHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCC
Q psy10738 136 KLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGN 215 (609)
Q Consensus 136 ~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 215 (609)
....++.++|.++...|+ +++|+.++++++.... .+.....+.++|.++...|+
T Consensus 97 --~~~~~~~~~~~~~~~~g~--------------------~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~ 150 (234)
T TIGR02521 97 --NNGDVLNNYGTFLCQQGK--------------------YEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGD 150 (234)
T ss_pred --CCHHHHHHHHHHHHHccc--------------------HHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCC
Confidence 334578899999999999 9999999999886421 23334577889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCC
Q psy10738 216 FKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD 295 (609)
Q Consensus 216 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 295 (609)
+++|..++.+++...+... .++..+|.++...|++++|..++++++...+. ....+..++.++...|+
T Consensus 151 ~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 218 (234)
T TIGR02521 151 FDKAEKYLTRALQIDPQRP------ESLLELAELYYLRGQYKDARAYLERYQQTYNQ------TAESLWLGIRIARALGD 218 (234)
T ss_pred HHHHHHHHHHHHHhCcCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhh
Confidence 9999999999988755432 36778999999999999999999998887221 24455677888889999
Q ss_pred HHHHHHHHHHHHH
Q psy10738 296 YPTAIDYHLRHLI 308 (609)
Q Consensus 296 ~~~A~~~~~~al~ 308 (609)
.++|..+.+....
T Consensus 219 ~~~a~~~~~~~~~ 231 (234)
T TIGR02521 219 VAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh
Confidence 9999888776544
No 44
>KOG0550|consensus
Probab=99.67 E-value=1.9e-15 Score=147.13 Aligned_cols=289 Identities=20% Similarity=0.160 Sum_probs=238.4
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhH
Q psy10738 20 NMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGE 99 (609)
Q Consensus 20 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~ 99 (609)
...-+...+|..+++..+|.+|+..|..|++..|++ +..|...+.+++..|+|++|.-..++.+.+ .+..
T Consensus 47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~----a~yy~nRAa~~m~~~~~~~a~~dar~~~r~------kd~~ 116 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN----ASYYSNRAATLMMLGRFEEALGDARQSVRL------KDGF 116 (486)
T ss_pred HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc----hhhhchhHHHHHHHHhHhhcccchhhheec------CCCc
Confidence 334455567999999999999999999999999988 558899999999999999999999999888 7777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----H-------HHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCC
Q psy10738 100 AKSSGNLGNTLKVMGKYDEAMVCCKRHL-----E-------ISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGE 167 (609)
Q Consensus 100 ~~a~~~lg~~~~~~g~~~~A~~~~~~al-----~-------l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~ 167 (609)
...+...+.++...++..+|...++..- . +.+.....+....+-..-+.++...|+
T Consensus 117 ~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~------------ 184 (486)
T KOG0550|consen 117 SKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGD------------ 184 (486)
T ss_pred cccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhccc------------
Confidence 7788899999999998888887766221 1 111112223445566777888999999
Q ss_pred CchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChH------HHHH
Q psy10738 168 YPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKA------AERR 241 (609)
Q Consensus 168 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~ 241 (609)
+++|...--..+++ ......++...|.+++..++.+.|+.+|++++.+.+...+.. ....
T Consensus 185 --------~~~a~~ea~~ilkl------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 185 --------YDEAQSEAIDILKL------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred --------chhHHHHHHHHHhc------ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHH
Confidence 88888766665555 455677888999999999999999999999999988754432 2244
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHH
Q psy10738 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321 (609)
Q Consensus 242 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 321 (609)
.+..-|+-.++.|+|..|.+.|..+|.+.+... ...+..|.+.|.+...+|+..+|+.-.+.++.+... ...
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~--~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s------yik 322 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNK--KTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS------YIK 322 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCcccc--chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH------HHH
Confidence 667789999999999999999999999998743 346889999999999999999999999999998776 567
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q psy10738 322 ACWSLGNAHAARGNHEKALYFATKHLEISKQ 352 (609)
Q Consensus 322 ~~~~La~~~~~~g~~~~A~~~~~~al~l~~~ 352 (609)
++...|.||..++++++|.+.|+++++....
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999998755
No 45
>KOG1125|consensus
Probab=99.66 E-value=2e-15 Score=153.26 Aligned_cols=271 Identities=17% Similarity=0.176 Sum_probs=206.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
+.+|..+++.|+..+|+-.|+.|+..+|.+ +.+|..||.+....++-..|+..+++++++ +|....++..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~h----aeAW~~LG~~qaENE~E~~ai~AL~rcl~L------dP~NleaLma 358 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQH----AEAWQKLGITQAENENEQNAISALRRCLEL------DPTNLEALMA 358 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHH----HHHHHHhhhHhhhccchHHHHHHHHHHHhc------CCccHHHHHH
Confidence 456999999999999999999999999987 559999999999999999999999999999 9999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
||..|...|.-.+|+.++.+-+...+... .+.... ..+. ...+.++. ....+..-.++|..
T Consensus 359 LAVSytNeg~q~~Al~~L~~Wi~~~p~y~----------~l~~a~-~~~~------~~~~~s~~--~~~~l~~i~~~fLe 419 (579)
T KOG1125|consen 359 LAVSYTNEGLQNQALKMLDKWIRNKPKYV----------HLVSAG-ENED------FENTKSFL--DSSHLAHIQELFLE 419 (579)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCccch----------hccccC-cccc------ccCCcCCC--CHHHHHHHHHHHHH
Confidence 99999999999999999998877654211 100000 0000 00000111 01113333333433
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 186 NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR 265 (609)
Q Consensus 186 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 265 (609)
+ ....+. .....++..||.+|+..|+|++|+.+|+.||...+.... .|..||..+....+.++|+..|.+
T Consensus 420 a---a~~~~~-~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~------lWNRLGAtLAN~~~s~EAIsAY~r 489 (579)
T KOG1125|consen 420 A---ARQLPT-KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYL------LWNRLGATLANGNRSEEAISAYNR 489 (579)
T ss_pred H---HHhCCC-CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHH------HHHHhhHHhcCCcccHHHHHHHHH
Confidence 3 222221 123568889999999999999999999999998665544 899999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcch----hhHHHHHHHHHHHHHHcCChHHHHH
Q psy10738 266 TLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR----VGEGRACWSLGNAHAARGNHEKALY 341 (609)
Q Consensus 266 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~La~~~~~~g~~~~A~~ 341 (609)
|+++-|.. .++.++||..|..+|.|++|.++|-.||.+.+..... .....+|..|-.++...++.+-+..
T Consensus 490 ALqLqP~y------VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 490 ALQLQPGY------VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHhcCCCe------eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 99998875 7899999999999999999999999999998873321 1123455555566666666664443
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=99.66 E-value=7.9e-15 Score=160.03 Aligned_cols=260 Identities=13% Similarity=-0.015 Sum_probs=200.4
Q ss_pred HHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHH
Q psy10738 60 SAIYSQLGNAYFYL---GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG---------KYDEAMVCCKRHL 127 (609)
Q Consensus 60 a~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g---------~~~~A~~~~~~al 127 (609)
+..++..|..+... +.+++|+.++++++++ .|..+.++..+|.+|...+ ++++|+..+++++
T Consensus 258 a~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 258 STMVYLRGKHELNQYTPYSLQQALKLLTQCVNM------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred HHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 34556666655443 4578999999999998 7888889999998877543 4899999999999
Q ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy10738 128 EISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLG 207 (609)
Q Consensus 128 ~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 207 (609)
++.+ ....++..+|.++...|+ +++|+..|++++++ .+....+++++|
T Consensus 332 ~ldP------~~~~a~~~lg~~~~~~g~--------------------~~~A~~~~~~Al~l------~P~~~~a~~~lg 379 (553)
T PRK12370 332 ELDH------NNPQALGLLGLINTIHSE--------------------YIVGSLLFKQANLL------SPISADIKYYYG 379 (553)
T ss_pred hcCC------CCHHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHHh------CCCCHHHHHHHH
Confidence 9876 556789999999999999 99999999999998 455567899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q psy10738 208 NTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLG 287 (609)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 287 (609)
.++...|++++|+.++++++++.+.... ++..++.++...|++++|+..+++++...+. ....++..+|
T Consensus 380 ~~l~~~G~~~eAi~~~~~Al~l~P~~~~------~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p-----~~~~~~~~la 448 (553)
T PRK12370 380 WNLFMAGQLEEALQTINECLKLDPTRAA------AGITKLWITYYHTGIDDAIRLGDELRSQHLQ-----DNPILLSMQV 448 (553)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCChh------hHHHHHHHHHhccCHHHHHHHHHHHHHhccc-----cCHHHHHHHH
Confidence 9999999999999999999998766433 4445566777899999999999998765421 1255778899
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q psy10738 288 NTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVT 367 (609)
Q Consensus 288 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la 367 (609)
.++...|++++|...+.+.....+ ....+...++.+|...|+ +|...+++.++......... ..++
T Consensus 449 ~~l~~~G~~~eA~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~------~~~~ 514 (553)
T PRK12370 449 MFLSLKGKHELARKLTKEISTQEI------TGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNP------GLLP 514 (553)
T ss_pred HHHHhCCCHHHHHHHHHHhhhccc------hhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCc------hHHH
Confidence 999999999999999987654432 234567778888888884 88888888666554332221 1266
Q ss_pred HHHHHcCCCCCCCCC
Q psy10738 368 DLRKALGMSTNDLSP 382 (609)
Q Consensus 368 ~l~~~~g~~~~al~~ 382 (609)
.++...|+.+.+..|
T Consensus 515 ~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 515 LVLVAHGEAIAEKMW 529 (553)
T ss_pred HHHHHHhhhHHHHHH
Confidence 777777776554433
No 47
>KOG2076|consensus
Probab=99.66 E-value=1e-13 Score=147.33 Aligned_cols=327 Identities=16% Similarity=0.145 Sum_probs=227.1
Q ss_pred hhhHhhhcCCCcchhHHHHHHH------------HHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHh
Q psy10738 6 ISSSDSQSGGADGGNMCLELAL------------EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYL 73 (609)
Q Consensus 6 Lg~~~~~~g~~~~a~~~~~l~~------------~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~ 73 (609)
.+..+...|+.+.|...+.-+. .|.+|-..|+.+++..++-.|-.++|.|++ .|..++.....+
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e----~W~~ladls~~~ 220 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE----LWKRLADLSEQL 220 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH----HHHHHHHHHHhc
Confidence 4555566688887776554333 388999999999999999999999998865 778888888899
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Q psy10738 74 GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAK 153 (609)
Q Consensus 74 g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~ 153 (609)
|++..|.-+|.+|+.. .|......+..+.+|..+|++..|+..|.+.+.+.+.. +....-..-...+..+...
T Consensus 221 ~~i~qA~~cy~rAI~~------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~-d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQA------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV-DIERIEDLIRRVAHYFITH 293 (895)
T ss_pred ccHHHHHHHHHHHHhc------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch-hHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988 77778888889999999999999999999888877621 1112222233445556666
Q ss_pred ccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----
Q psy10738 154 GKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLK----- 228 (609)
Q Consensus 154 g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----- 228 (609)
++ -+.|++.++.++..... ......+..++.++.....++.|..+......
T Consensus 294 ~~--------------------~e~a~~~le~~~s~~~~----~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~ 349 (895)
T KOG2076|consen 294 NE--------------------RERAAKALEGALSKEKD----EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEK 349 (895)
T ss_pred hH--------------------HHHHHHHHHHHHhhccc----cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCC
Confidence 65 45555555555541110 11111222333444444444444333322211
Q ss_pred -----------------------------------------------------HHHHhCChHHHHHHHHHHHHHHHHhCC
Q psy10738 229 -----------------------------------------------------IAREFGDKAAERRANSNLGNSHIFLGE 255 (609)
Q Consensus 229 -----------------------------------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~ 255 (609)
+.............+..++.++...|+
T Consensus 350 d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~ 429 (895)
T KOG2076|consen 350 DDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGK 429 (895)
T ss_pred ChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhccc
Confidence 000111123334588899999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCC
Q psy10738 256 YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGN 335 (609)
Q Consensus 256 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~ 335 (609)
|.+|+.++........ ...+.+|+.+|.+|..+|.+++|+++|.+++...+..- .+...|+.++..+|+
T Consensus 430 ~~~Al~~l~~i~~~~~-----~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~------D~Ri~Lasl~~~~g~ 498 (895)
T KOG2076|consen 430 YKEALRLLSPITNREG-----YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNL------DARITLASLYQQLGN 498 (895)
T ss_pred HHHHHHHHHHHhcCcc-----ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCch------hhhhhHHHHHHhcCC
Confidence 9999999987665332 22377999999999999999999999999999877643 488899999999999
Q ss_pred hHHHHHHHHHHHHHH---HHcCCCchHHHHHHHHHHHHHHcCCCCC
Q psy10738 336 HEKALYFATKHLEIS---KQLGDPLGQVTAQMNVTDLRKALGMSTN 378 (609)
Q Consensus 336 ~~~A~~~~~~al~l~---~~~~~~~~~~~a~~~la~l~~~~g~~~~ 378 (609)
+++|.+.+.....-- .+........+......+++...|+.+.
T Consensus 499 ~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 499 HEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 999988877743111 1222334567788888999999998765
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=1.5e-13 Score=130.20 Aligned_cols=280 Identities=18% Similarity=0.169 Sum_probs=225.3
Q ss_pred chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChh
Q psy10738 18 GGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKL 97 (609)
Q Consensus 18 ~a~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~ 97 (609)
.+...-.-+..|..+.-..+.++|+..|...++.+|... .+...||+.|...|+.+.|+..++..+....-. ..
T Consensus 31 qa~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~----e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT--~~ 104 (389)
T COG2956 31 QANRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETF----EAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLT--FE 104 (389)
T ss_pred HHhhccHHHHhHHHHHhhcCcchHHHHHHHHHhcCchhh----HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCc--hH
Confidence 333344455679999999999999999999999888754 478899999999999999999988766541111 23
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHH
Q psy10738 98 GEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQ 177 (609)
Q Consensus 98 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 177 (609)
....+...||.-|...|-++.|...|....+.-. ....++..|-.+|....+ |+
T Consensus 105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e------fa~~AlqqLl~IYQ~tre--------------------W~ 158 (389)
T COG2956 105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE------FAEGALQQLLNIYQATRE--------------------WE 158 (389)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh------hhHHHHHHHHHHHHHhhH--------------------HH
Confidence 3567889999999999999999999987766433 555688899999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHH
Q psy10738 178 EAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQ 257 (609)
Q Consensus 178 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 257 (609)
+|++..++..++-.+ .....++..|..++..+....+++.|...+.+|++..++..- +-..+|.++...|+|+
T Consensus 159 KAId~A~~L~k~~~q-~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR------Asi~lG~v~~~~g~y~ 231 (389)
T COG2956 159 KAIDVAERLVKLGGQ-TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR------ASIILGRVELAKGDYQ 231 (389)
T ss_pred HHHHHHHHHHHcCCc-cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee------hhhhhhHHHHhccchH
Confidence 999988876665332 334667889999999999999999999999999998777654 7788999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChH
Q psy10738 258 AASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHE 337 (609)
Q Consensus 258 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~ 337 (609)
.|++.++.+++..+. ....+...|..+|..+|+.++.+.++.++.+.... ..+...++.+-....-.+
T Consensus 232 ~AV~~~e~v~eQn~~-----yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-------~~~~l~l~~lie~~~G~~ 299 (389)
T COG2956 232 KAVEALERVLEQNPE-----YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-------ADAELMLADLIELQEGID 299 (389)
T ss_pred HHHHHHHHHHHhChH-----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-------ccHHHHHHHHHHHhhChH
Confidence 999999998886655 47888899999999999999999999998876554 234555666666666667
Q ss_pred HHHHHHHHHHH
Q psy10738 338 KALYFATKHLE 348 (609)
Q Consensus 338 ~A~~~~~~al~ 348 (609)
.|..++.+-+.
T Consensus 300 ~Aq~~l~~Ql~ 310 (389)
T COG2956 300 AAQAYLTRQLR 310 (389)
T ss_pred HHHHHHHHHHh
Confidence 77776655444
No 49
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.65 E-value=2.5e-14 Score=138.06 Aligned_cols=202 Identities=23% Similarity=0.224 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
...+...|..+...|++++|+..++++++..|.+. .++..+|.++...|++++|+.++++++.. .+....
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~ 100 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY----LAYLALALYYQQLGELEKAEDSFRRALTL------NPNNGD 100 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHH
Confidence 34555679999999999999999999999988764 47889999999999999999999999988 455667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHH
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~ 181 (609)
++.++|.++...|++++|+.++.+++.... .......+..+|.++...|+ +++|..
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~ 156 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGD--------------------FDKAEK 156 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCC--------------------HHHHHH
Confidence 899999999999999999999999987422 22345678889999999999 999999
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHH
Q psy10738 182 YYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261 (609)
Q Consensus 182 ~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 261 (609)
++.+++... +....++..+|.++...|++++|+.++++++...+ . ....+..++.++...|+.++|..
T Consensus 157 ~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~a~~ 224 (234)
T TIGR02521 157 YLTRALQID------PQRPESLLELAELYYLRGQYKDARAYLERYQQTYN---Q---TAESLWLGIRIARALGDVAAAQR 224 (234)
T ss_pred HHHHHHHhC------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C---CHHHHHHHHHHHHHHhhHHHHHH
Confidence 999998863 22345788999999999999999999999988722 1 12255578899999999999998
Q ss_pred HHHHHHHH
Q psy10738 262 HYKRTLVL 269 (609)
Q Consensus 262 ~~~~al~~ 269 (609)
+.+.....
T Consensus 225 ~~~~~~~~ 232 (234)
T TIGR02521 225 YGAQLQKL 232 (234)
T ss_pred HHHHHHhh
Confidence 87766543
No 50
>KOG1129|consensus
Probab=99.64 E-value=3.3e-15 Score=141.03 Aligned_cols=240 Identities=15% Similarity=0.105 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHH
Q psy10738 21 MCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEA 100 (609)
Q Consensus 21 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~ 100 (609)
.++-....|.+|+..|-+.+|.+.++.+++..|. ...+..|+.+|....+...|+..+.+.++. .|...
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-----~dTfllLskvY~ridQP~~AL~~~~~gld~------fP~~V 290 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-----PDTFLLLSKVYQRIDQPERALLVIGEGLDS------FPFDV 290 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-----hhHHHHHHHHHHHhccHHHHHHHHhhhhhc------CCchh
Confidence 3444445577888888888888888877776653 335677777787778888888777777776 66667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHH
Q psy10738 101 KSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAI 180 (609)
Q Consensus 101 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~ 180 (609)
..+..++.++..++++++|.++|+.+++..+ ....+...+|.-|+..++ .+-|+
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~------~nvEaiAcia~~yfY~~~--------------------PE~Al 344 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKLHP------INVEAIACIAVGYFYDNN--------------------PEMAL 344 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCC------ccceeeeeeeeccccCCC--------------------hHHHH
Confidence 7777777788888888888888877777655 444555566777777777 77788
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHH
Q psy10738 181 KYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAAS 260 (609)
Q Consensus 181 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 260 (609)
.||.+.+.+- ......+.|+|.+.+.-++++-++..|++++..+...+ ..+.+|+|+|.+....|++..|.
T Consensus 345 ryYRRiLqmG------~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~---~aaDvWYNlg~vaV~iGD~nlA~ 415 (478)
T KOG1129|consen 345 RYYRRILQMG------AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPG---QAADVWYNLGFVAVTIGDFNLAK 415 (478)
T ss_pred HHHHHHHHhc------CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcc---hhhhhhhccceeEEeccchHHHH
Confidence 8887777662 23345777788777777888888888877777654322 23447778888777788888777
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 261 EHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 261 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 312 (609)
..|+-++....+ ...++.+||.+-...|+.++|..++..|-...+.
T Consensus 416 rcfrlaL~~d~~------h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 416 RCFRLALTSDAQ------HGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHHHHhccCcc------hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 777766654433 3667777777777778888887777776665544
No 51
>KOG0624|consensus
Probab=99.64 E-value=4.3e-14 Score=134.42 Aligned_cols=281 Identities=16% Similarity=0.134 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
....+..|..++..|++..|+..|..|++.+|++.. +++..|.+|..+|+-.-|+..+.+++++ .+....
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~----aifrRaT~yLAmGksk~al~Dl~rVlel------KpDF~~ 107 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQ----AIFRRATVYLAMGKSKAALQDLSRVLEL------KPDFMA 107 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHH----HHHHHHHHHhhhcCCccchhhHHHHHhc------CccHHH
Confidence 334445599999999999999999999999998744 7899999999999999999999999999 888999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcH---------HHHHHHHHHHHHHHHcccccccCCCCCCCCCchHh
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKL---------SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEV 172 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~---------~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~ 172 (609)
+....|.++..+|++++|..-|...+...+..+... .....+......++..|+
T Consensus 108 ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD----------------- 170 (504)
T KOG0624|consen 108 ARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGD----------------- 170 (504)
T ss_pred HHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCc-----------------
Confidence 999999999999999999999999987655332111 112233444555666777
Q ss_pred HHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q psy10738 173 KVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIF 252 (609)
Q Consensus 173 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 252 (609)
+..|+.+....+++ .++.+..+...+.+|...|+...|+.-++.+-++...+.+ .++.++.+++.
T Consensus 171 ---~~~ai~~i~~llEi------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe------~~ykis~L~Y~ 235 (504)
T KOG0624|consen 171 ---CQNAIEMITHLLEI------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTE------GHYKISQLLYT 235 (504)
T ss_pred ---hhhHHHHHHHHHhc------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchH------HHHHHHHHHHh
Confidence 89999999888887 5667778888888999999999998888888777665554 67777777777
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCCcH--------------------------------------------HHHHHHHHHHH
Q psy10738 253 LGEYQAASEHYKRTLVLAQDLGDRA--------------------------------------------VEAQACYSLGN 288 (609)
Q Consensus 253 ~g~~~~A~~~~~~al~~~~~~~~~~--------------------------------------------~~~~~~~~la~ 288 (609)
.|+.+.++...++++++.++...-. ........+..
T Consensus 236 vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 236 VGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCT 315 (504)
T ss_pred hhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeee
Confidence 7777777776666666544432110 00111222344
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 289 TYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 289 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
++..-|++-+|+....+++.+.++ .+.++...|.+|.....|+.|+.-|++|.++.
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~------dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPD------DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCch------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 555556666666666666655443 45678888888888888888888888888765
No 52
>KOG0548|consensus
Probab=99.64 E-value=3.8e-13 Score=135.77 Aligned_cols=319 Identities=22% Similarity=0.263 Sum_probs=243.9
Q ss_pred hhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHh
Q psy10738 6 ISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYL 73 (609)
Q Consensus 6 Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~ 73 (609)
=|......|+++.|+.++.-++. ..++...|+|.+|+.--.+.++++|.- +..|..+|..++-+
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w----~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW----AKGYSRKGAALFGL 83 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch----hhHHHHhHHHHHhc
Confidence 36667788888888888765543 667888899999999999999998874 55889999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHc------------------------------------------------------------
Q psy10738 74 GDYQKAMQYHKQDLTLARNM------------------------------------------------------------ 93 (609)
Q Consensus 74 g~~~~A~~~~~~al~~~~~~------------------------------------------------------------ 93 (609)
|+|++|+..|.+.|+.-...
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 99999999888877531000
Q ss_pred ------------------------------------------------CChh------hHHHHHHHHHHHHHHcCCHHHH
Q psy10738 94 ------------------------------------------------EDKL------GEAKSSGNLGNTLKVMGKYDEA 119 (609)
Q Consensus 94 ------------------------------------------------~d~~------~~~~a~~~lg~~~~~~g~~~~A 119 (609)
.|.. ..+.....+|+..+...++..|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 0000 0234456677788888888999
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh-CChHH
Q psy10738 120 MVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI-NDTAA 198 (609)
Q Consensus 120 ~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~ 198 (609)
+++|..++++... ..-+.+.+.+|...|. +..++....++++...+. .+...
T Consensus 244 ~q~y~~a~el~~~-------it~~~n~aA~~~e~~~--------------------~~~c~~~c~~a~E~gre~rad~kl 296 (539)
T KOG0548|consen 244 IQHYAKALELATD-------ITYLNNIAAVYLERGK--------------------YAECIELCEKAVEVGRELRADYKL 296 (539)
T ss_pred HHHHHHHHhHhhh-------hHHHHHHHHHHHhccH--------------------HHHhhcchHHHHHHhHHHHHHHHH
Confidence 9999999888742 2355677888888888 777777766666554433 12233
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCh--------------------HHHHHHHHHHHHHHHHhCCHHH
Q psy10738 199 QGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDK--------------------AAERRANSNLGNSHIFLGEYQA 258 (609)
Q Consensus 199 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------~~~~~~~~~la~~~~~~g~~~~ 258 (609)
++.++..+|..|...++++.|+.+|++++.-.+..... ...+.--..-|+.++..|+|..
T Consensus 297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHH
Confidence 56677779999999999999999999987654431000 0112233456999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHH
Q psy10738 259 ASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEK 338 (609)
Q Consensus 259 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 338 (609)
|+.+|.+++...++ .+..|.+.|.+|.++|++..|+...++++++.+. ....|..-|.++..+.+|++
T Consensus 377 Av~~YteAIkr~P~------Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~------~~kgy~RKg~al~~mk~ydk 444 (539)
T KOG0548|consen 377 AVKHYTEAIKRDPE------DARLYSNRAACYLKLGEYPEALKDAKKCIELDPN------FIKAYLRKGAALRAMKEYDK 444 (539)
T ss_pred HHHHHHHHHhcCCc------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch------HHHHHHHHHHHHHHHHHHHH
Confidence 99999999987765 4889999999999999999999999999988554 56688899999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q psy10738 339 ALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKAL 373 (609)
Q Consensus 339 A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~ 373 (609)
|++.|.++++.. +....+.-.+.++..++
T Consensus 445 Aleay~eale~d------p~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 445 ALEAYQEALELD------PSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHhcC------chhHHHHHHHHHHHHHh
Confidence 999999999976 56667777777777765
No 53
>KOG1129|consensus
Probab=99.64 E-value=7.6e-15 Score=138.67 Aligned_cols=268 Identities=18% Similarity=0.185 Sum_probs=224.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhC---Cc--chhHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAG---TD--DLRTLS-AIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~---~~--~~~~~a-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
-.+++...|...|-......+++. |. ..-... +.-..+|.||+.+|-+.+|.+.++.+++. ....+.
T Consensus 186 ey~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q-------~~~~dT 258 (478)
T KOG1129|consen 186 EYLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ-------FPHPDT 258 (478)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc-------CCchhH
Confidence 346778888888887777776652 21 111111 23357899999999999999999999986 335678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 182 (609)
+..|+.+|....+...|+..+.+.++..+ .....+..++.++..+++ +++|.++
T Consensus 259 fllLskvY~ridQP~~AL~~~~~gld~fP------~~VT~l~g~ARi~eam~~--------------------~~~a~~l 312 (478)
T KOG1129|consen 259 FLLLSKVYQRIDQPERALLVIGEGLDSFP------FDVTYLLGQARIHEAMEQ--------------------QEDALQL 312 (478)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhhhhcCC------chhhhhhhhHHHHHHHHh--------------------HHHHHHH
Confidence 88999999999999999999999998887 667788899999999999 9999999
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Q psy10738 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEH 262 (609)
Q Consensus 183 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 262 (609)
|+.+++. .+....+...+|.-|+.-++.+-|+.+|++.+.+--..+. .+.|+|.+.+..++++-++..
T Consensus 313 Yk~vlk~------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe------Lf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 313 YKLVLKL------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE------LFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHHHhc------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH------HHhhHHHHHHhhcchhhhHHH
Confidence 9999887 4555666777888899999999999999999988665555 899999999999999999999
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHH
Q psy10738 263 YKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYF 342 (609)
Q Consensus 263 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~ 342 (609)
|++|+..+... ...+.+|+++|.+....|++.-|...|+-++....+ .+.++.+||.+-.+.|+.++|..+
T Consensus 381 f~RAlstat~~---~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~------h~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 381 FQRALSTATQP---GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ------HGEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred HHHHHhhccCc---chhhhhhhccceeEEeccchHHHHHHHHHHhccCcc------hHHHHHhHHHHHhhcCchHHHHHH
Confidence 99999877533 335889999999999999999999999988865433 567999999999999999999999
Q ss_pred HHHHHHHH
Q psy10738 343 ATKHLEIS 350 (609)
Q Consensus 343 ~~~al~l~ 350 (609)
+..|-.+.
T Consensus 452 l~~A~s~~ 459 (478)
T KOG1129|consen 452 LNAAKSVM 459 (478)
T ss_pred HHHhhhhC
Confidence 99887765
No 54
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.63 E-value=2.4e-14 Score=129.89 Aligned_cols=211 Identities=22% Similarity=0.219 Sum_probs=181.5
Q ss_pred cchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10738 54 DDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL 133 (609)
Q Consensus 54 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 133 (609)
.+....+.+...||.-|+..|++..|...+++|++. +|....+|..++.+|...|+.+.|.+.|++|+.+.+
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-- 100 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-- 100 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC--
Confidence 455667889999999999999999999999999999 899999999999999999999999999999999988
Q ss_pred CCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHc
Q psy10738 134 NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLL 213 (609)
Q Consensus 134 ~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~ 213 (609)
..+.+++|.|..++..|+ +++|..+|++|+.. ..-.....++.|+|.|..+.
T Consensus 101 ----~~GdVLNNYG~FLC~qg~--------------------~~eA~q~F~~Al~~----P~Y~~~s~t~eN~G~Cal~~ 152 (250)
T COG3063 101 ----NNGDVLNNYGAFLCAQGR--------------------PEEAMQQFERALAD----PAYGEPSDTLENLGLCALKA 152 (250)
T ss_pred ----CccchhhhhhHHHHhCCC--------------------hHHHHHHHHHHHhC----CCCCCcchhhhhhHHHHhhc
Confidence 556699999999999999 99999999999864 33345577999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHh
Q psy10738 214 GNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL 293 (609)
Q Consensus 214 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 293 (609)
|+++.|.++|++++++.+.... ....++..++..|+|..|..+++........ .+..+.....+....
T Consensus 153 gq~~~A~~~l~raL~~dp~~~~------~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~------~A~sL~L~iriak~~ 220 (250)
T COG3063 153 GQFDQAEEYLKRALELDPQFPP------ALLELARLHYKAGDYAPARLYLERYQQRGGA------QAESLLLGIRIAKRL 220 (250)
T ss_pred CCchhHHHHHHHHHHhCcCCCh------HHHHHHHHHHhcccchHHHHHHHHHHhcccc------cHHHHHHHHHHHHHh
Confidence 9999999999999999988776 7788999999999999999999876543321 355666666777888
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy10738 294 RDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 294 g~~~~A~~~~~~al~~~~~ 312 (609)
|+-+.|-.|-.+....++.
T Consensus 221 gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 221 GDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred ccHHHHHHHHHHHHHhCCC
Confidence 9988888877665555443
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=3.8e-15 Score=148.82 Aligned_cols=258 Identities=21% Similarity=0.205 Sum_probs=113.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q psy10738 64 SQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRAL 143 (609)
Q Consensus 64 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~ 143 (609)
..+|.+++..|++++|++.+.+.+.... ++.....+..+|.+....++++.|+..|++.+...+ .....+
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~----~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~------~~~~~~ 81 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIA----PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK------ANPQDY 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccc----cccccccccccccccccccccccccccccccccccc------cccccc
Confidence 3669999999999999999977655421 244557888899999999999999999999987755 344456
Q ss_pred HHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10738 144 YNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYH 223 (609)
Q Consensus 144 ~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 223 (609)
..++.+ ...++ +++|+.+++++.+.. + ....+.....++...|+++++...+
T Consensus 82 ~~l~~l-~~~~~--------------------~~~A~~~~~~~~~~~---~----~~~~l~~~l~~~~~~~~~~~~~~~l 133 (280)
T PF13429_consen 82 ERLIQL-LQDGD--------------------PEEALKLAEKAYERD---G----DPRYLLSALQLYYRLGDYDEAEELL 133 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred cccccc-ccccc--------------------ccccccccccccccc---c----ccchhhHHHHHHHHHhHHHHHHHHH
Confidence 667776 67788 999999988776542 2 1234556677889999999999999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q psy10738 224 QERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 303 (609)
Q Consensus 224 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 303 (609)
+++..... .......+..+|.++...|++++|+..|+++++..|.. ..+...++.++...|+++++...+
T Consensus 134 ~~~~~~~~----~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~------~~~~~~l~~~li~~~~~~~~~~~l 203 (280)
T PF13429_consen 134 EKLEELPA----APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD------PDARNALAWLLIDMGDYDEAREAL 203 (280)
T ss_dssp HHHHH-T-------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHhccC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHCCChHHHHHHH
Confidence 99774221 11234578899999999999999999999999998863 667888999999999999988888
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 304 LRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 304 ~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
.......+.... .+..+|.+|..+|++++|+.++++++... +....++..+|+++...|+.+.|..
T Consensus 204 ~~~~~~~~~~~~------~~~~la~~~~~lg~~~~Al~~~~~~~~~~------p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 204 KRLLKAAPDDPD------LWDALAAAYLQLGRYEEALEYLEKALKLN------PDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp HHHHHH-HTSCC------HCHHHHHHHHHHT-HHHHHHHHHHHHHHS------TT-HHHHHHHHHHHT----------
T ss_pred HHHHHHCcCHHH------HHHHHHHHhcccccccccccccccccccc------ccccccccccccccccccccccccc
Confidence 887776644322 67789999999999999999999998765 6778999999999999999998865
No 56
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.62 E-value=4.4e-14 Score=141.64 Aligned_cols=244 Identities=14% Similarity=-0.006 Sum_probs=178.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Q psy10738 74 GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAK 153 (609)
Q Consensus 74 g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~ 153 (609)
+..+.++..+.+++.... .++...+..++.+|.+|...|++++|+..|++++++.+ ....+++++|.++...
T Consensus 40 ~~~e~~i~~~~~~l~~~~--~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P------~~~~a~~~lg~~~~~~ 111 (296)
T PRK11189 40 LQQEVILARLNQILASRD--LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP------DMADAYNYLGIYLTQA 111 (296)
T ss_pred hHHHHHHHHHHHHHcccc--CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHC
Confidence 466778888888775422 23456688999999999999999999999999999876 4577999999999999
Q ss_pred ccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy10738 154 GKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREF 233 (609)
Q Consensus 154 g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (609)
|+ +++|+..|++++++ .+....++.++|.++...|++++|+..+++++++.+..
T Consensus 112 g~--------------------~~~A~~~~~~Al~l------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~ 165 (296)
T PRK11189 112 GN--------------------FDAAYEAFDSVLEL------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND 165 (296)
T ss_pred CC--------------------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 99 99999999999988 45556789999999999999999999999999876543
Q ss_pred CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HH
Q psy10738 234 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI---IA 310 (609)
Q Consensus 234 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~ 310 (609)
. . ...+. .+....+++++|+..+.++...... + .+ ..+.++...|++..+ ..+..+.. ..
T Consensus 166 ~--~--~~~~~---~l~~~~~~~~~A~~~l~~~~~~~~~--~------~~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~ 228 (296)
T PRK11189 166 P--Y--RALWL---YLAESKLDPKQAKENLKQRYEKLDK--E------QW-GWNIVEFYLGKISEE-TLMERLKAGATDN 228 (296)
T ss_pred H--H--HHHHH---HHHHccCCHHHHHHHHHHHHhhCCc--c------cc-HHHHHHHHccCCCHH-HHHHHHHhcCCCc
Confidence 2 1 11111 2344578899999999876533211 1 11 134555566766544 23333332 11
Q ss_pred HHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCC
Q psy10738 311 QQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGM 375 (609)
Q Consensus 311 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~ 375 (609)
.++ ......+|+.+|.++...|++++|+.+|++++++. ++.....++.+.++....+.
T Consensus 229 ~~l--~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-----~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 229 TEL--AERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-----VYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CchHHHHHHHHHHHHHHHhh
Confidence 121 12346699999999999999999999999999754 34556666666665555443
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=3.8e-13 Score=141.50 Aligned_cols=286 Identities=12% Similarity=0.016 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhH-H
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGE-A 100 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~-~ 100 (609)
......+|...+..|+++.|.+.+.++.+..|+.. ..+...|.++...|+++.|..++.++.+. .+.. .
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~----~~~llaA~aa~~~g~~~~A~~~l~~a~~~------~p~~~l 153 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPV----LNLIKAAEAAQQRGDEARANQHLEEAAEL------AGNDNI 153 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCcCch
Confidence 34556679999999999999999999888877542 25567788899999999999999998765 2222 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHH
Q psy10738 101 KSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAI 180 (609)
Q Consensus 101 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~ 180 (609)
.+....+.++...|+++.|...+++.++..| ....++..++.+|...|+ +++|.
T Consensus 154 ~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P------~~~~~l~ll~~~~~~~~d--------------------~~~a~ 207 (409)
T TIGR00540 154 LVEIARTRILLAQNELHAARHGVDKLLEMAP------RHKEVLKLAEEAYIRSGA--------------------WQALD 207 (409)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHhh--------------------HHHHH
Confidence 2344458888999999999999998888766 444678888999999998 45444
Q ss_pred HHHHHHHHH-----------------------------------HHHhC-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10738 181 KYYEQNLAL-----------------------------------MKEIN-DTAAQGRACGNLGNTYYLLGNFKQAIYYHQ 224 (609)
Q Consensus 181 ~~~~~al~~-----------------------------------~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 224 (609)
+.+.+.++. ..... .......++..+|..+...|++++|...++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~ 287 (409)
T TIGR00540 208 DIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIF 287 (409)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 444433321 00010 001235677788889999999999999999
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy10738 225 ERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 304 (609)
Q Consensus 225 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 304 (609)
++++..++..... ............++.+.+++.++++++..+.. .. +.....+|.++...|++++|.++|+
T Consensus 288 ~~l~~~pd~~~~~----~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~---~~-~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 288 DGLKKLGDDRAIS----LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK---PK-CCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHhhCCCcccch----hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC---hh-HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 9988765443211 01222233344577888888888887665542 11 2677789999999999999999999
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCC
Q psy10738 305 RHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDP 356 (609)
Q Consensus 305 ~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 356 (609)
++..+... .+ ...+..+|.++...|+.++|..++++++...-.+++.
T Consensus 360 ~a~a~~~~-p~----~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~~~ 406 (409)
T TIGR00540 360 NVAACKEQ-LD----ANDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQDN 406 (409)
T ss_pred HhHHhhcC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 54333221 11 2235588999999999999999999998887666554
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.59 E-value=1.2e-13 Score=125.30 Aligned_cols=207 Identities=20% Similarity=0.166 Sum_probs=177.0
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHh
Q psy10738 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVC 175 (609)
Q Consensus 96 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 175 (609)
....+.+...||.-|...|++..|...+++|+++.+ ....++..++.+|...|+
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DP------s~~~a~~~~A~~Yq~~Ge-------------------- 84 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDP------SYYLAHLVRAHYYQKLGE-------------------- 84 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHcCC--------------------
Confidence 445678899999999999999999999999999988 677899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCC
Q psy10738 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGE 255 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 255 (609)
.+.|.+.|++|+++ .+..+.+++|.|..++.+|++++|..+|++|+.. +.. ...+..+.|+|.|..+.|+
T Consensus 85 ~~~A~e~YrkAlsl------~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y---~~~s~t~eN~G~Cal~~gq 154 (250)
T COG3063 85 NDLADESYRKALSL------APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAY---GEPSDTLENLGLCALKAGQ 154 (250)
T ss_pred hhhHHHHHHHHHhc------CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCC---CCcchhhhhhHHHHhhcCC
Confidence 99999999999999 4555669999999999999999999999999863 222 2234489999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCC
Q psy10738 256 YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGN 335 (609)
Q Consensus 256 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~ 335 (609)
++.|.++|++++++.+.. ......++..+...|+|-.|..++++...... ..+..++...++-...|+
T Consensus 155 ~~~A~~~l~raL~~dp~~------~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~------~~A~sL~L~iriak~~gd 222 (250)
T COG3063 155 FDQAEEYLKRALELDPQF------PPALLELARLHYKAGDYAPARLYLERYQQRGG------AQAESLLLGIRIAKRLGD 222 (250)
T ss_pred chhHHHHHHHHHHhCcCC------ChHHHHHHHHHHhcccchHHHHHHHHHHhccc------ccHHHHHHHHHHHHHhcc
Confidence 999999999999998875 55778899999999999999999987654322 356788888889999999
Q ss_pred hHHHHHHHHHHHHHH
Q psy10738 336 HEKALYFATKHLEIS 350 (609)
Q Consensus 336 ~~~A~~~~~~al~l~ 350 (609)
.+.|-.|-.+....+
T Consensus 223 ~~~a~~Y~~qL~r~f 237 (250)
T COG3063 223 RAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999888866655544
No 59
>KOG1174|consensus
Probab=99.57 E-value=1.3e-12 Score=127.25 Aligned_cols=279 Identities=15% Similarity=0.087 Sum_probs=186.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
|.+++..|++++|+-.|+++.-++|.... ..-..|..+...|+++.-.......+.. ....+.-|+.-|.
T Consensus 239 ak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~----~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~------~~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 239 GKCLYYNGDYFQAEDIFSSTLCANPDNVE----AMDLYAVLLGQEGGCEQDSALMDYLFAK------VKYTASHWFVHAQ 308 (564)
T ss_pred hhhhhhhcCchHHHHHHHHHhhCChhhhh----hHHHHHHHHHhccCHhhHHHHHHHHHhh------hhcchhhhhhhhh
Confidence 56666666666666666666666654432 3334445555556655555444444444 2223344555566
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHH
Q psy10738 109 TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLA 188 (609)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 188 (609)
..+...++..|+.+.+++++..+ ....++...|.++...|+ .++|+-.|..|..
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~------r~~~alilKG~lL~~~~R--------------------~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEP------RNHEALILKGRLLIALER--------------------HTQAVIAFRTAQM 362 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCc------ccchHHHhccHHHHhccc--------------------hHHHHHHHHHHHh
Confidence 66666777777777777776655 445567777777777777 7777777777776
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH-HHHHHh-CCHHHHHHHHHHH
Q psy10738 189 LMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLG-NSHIFL-GEYQAASEHYKRT 266 (609)
Q Consensus 189 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la-~~~~~~-g~~~~A~~~~~~a 266 (609)
+ .|....+|..|-.+|...|.+.+|....+.++...+.... ++..+| .++... .--++|.++++++
T Consensus 363 L------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~------~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 363 L------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR------SLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred c------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh------hhhhhcceeeccCchhHHHHHHHHHhh
Confidence 6 3455667777777777777777777777777776655433 555554 333322 2346777777777
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy10738 267 LVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKH 346 (609)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~a 346 (609)
+.+.|.. ..+...+|.++...|.++.++..+++++....+ ...+..||.++...+.+.+|+.+|..|
T Consensus 431 L~~~P~Y------~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-------~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 431 LKINPIY------TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-------VNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred hccCCcc------HHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-------cHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7766653 556778889999999999999999998887654 346778899999999999999999999
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHcC
Q psy10738 347 LEISKQLGDPLGQVTAQMNVTDLRKALG 374 (609)
Q Consensus 347 l~l~~~~~~~~~~~~a~~~la~l~~~~g 374 (609)
+.+. +....+...|-.+-+...
T Consensus 498 Lr~d------P~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 498 LRQD------PKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HhcC------ccchHHHHHHHHHHhccC
Confidence 8865 455566666666655444
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=7.8e-13 Score=125.32 Aligned_cols=241 Identities=20% Similarity=0.167 Sum_probs=201.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q psy10738 64 SQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRAL 143 (609)
Q Consensus 64 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~ 143 (609)
+..|.-+.-..+.++|+..|...++. ++...++...||+.|...|..+.|+..-+..++- +... ......++
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT-~~qr~lAl 110 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQE------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLT-FEQRLLAL 110 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhc------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCc-hHHHHHHH
Confidence 34566677778999999999999887 8888999999999999999999999987755432 2111 12456789
Q ss_pred HHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10738 144 YNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYH 223 (609)
Q Consensus 144 ~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 223 (609)
..||.-|...|- ++.|...|....+. ......++..|-.+|....+|++|++..
T Consensus 111 ~qL~~Dym~aGl--------------------~DRAE~~f~~L~de------~efa~~AlqqLl~IYQ~treW~KAId~A 164 (389)
T COG2956 111 QQLGRDYMAAGL--------------------LDRAEDIFNQLVDE------GEFAEGALQQLLNIYQATREWEKAIDVA 164 (389)
T ss_pred HHHHHHHHHhhh--------------------hhHHHHHHHHHhcc------hhhhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999 99999998876653 3344568889999999999999999998
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q psy10738 224 QERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 303 (609)
Q Consensus 224 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 303 (609)
++...+-++ .....++..|..+|..+....+.+.|...+.+|++..++. ..+-..+|.++...|+|++|++.+
T Consensus 165 ~~L~k~~~q-~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c------vRAsi~lG~v~~~~g~y~~AV~~~ 237 (389)
T COG2956 165 ERLVKLGGQ-TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKC------VRASIILGRVELAKGDYQKAVEAL 237 (389)
T ss_pred HHHHHcCCc-cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc------eehhhhhhHHHHhccchHHHHHHH
Confidence 887766443 3345678899999999999999999999999999988875 677888999999999999999999
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 304 LRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 304 ~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
+.+++-. +.....+...|..+|..+|+.++.+.++.++.+..
T Consensus 238 e~v~eQn-----~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 238 ERVLEQN-----PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHhC-----hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 9988654 44577899999999999999999999999998865
No 61
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.56 E-value=2.2e-12 Score=133.76 Aligned_cols=318 Identities=16% Similarity=0.020 Sum_probs=224.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.+...|..+...|+++.|...+.++.+..+.+.. ........|.++...|++++|...++++++. .|....++
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~------~P~~~~a~ 80 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARAT-ERERAHVEALSAWIAGDLPKALALLEQLLDD------YPRDLLAL 80 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CCCcHHHH
Confidence 4455678888889999999999999988775542 3445667899999999999999999999987 44444555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
.. +..+...|++..+.....+++.. .....+....++..+|.++...|+ +++|+..+
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~--------------------~~~A~~~~ 137 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQ--------------------YDRAEEAA 137 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCC--------------------HHHHHHHH
Confidence 54 66777777766666666666554 233444667788899999999999 99999999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q psy10738 184 EQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHY 263 (609)
Q Consensus 184 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 263 (609)
++++++. +....++..+|.+++..|++++|+.++++++...+.. .......+..+|.++...|++++|+..|
T Consensus 138 ~~al~~~------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~--~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 138 RRALELN------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS--SMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHhhC------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC--cchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999973 3335688999999999999999999999999876542 2233446778999999999999999999
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHH
Q psy10738 264 KRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFA 343 (609)
Q Consensus 264 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~ 343 (609)
++++...+.. ...........+...+...|....+..+ +......................+.++...|+.++|...+
T Consensus 210 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 210 DTHIAPSAES-DPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHhccccCC-ChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9986433211 1111110111233344445544444333 2222221111111112223346788889999999999999
Q ss_pred HHHHHHHHH---cCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 344 TKHLEISKQ---LGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 344 ~~al~l~~~---~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
+........ .+.......+....+.++...|+...|+.
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~ 328 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALE 328 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHH
Confidence 998888877 45455567788888999999998877654
No 62
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.56 E-value=2e-12 Score=135.32 Aligned_cols=272 Identities=12% Similarity=-0.008 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhH-
Q psy10738 21 MCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGE- 99 (609)
Q Consensus 21 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~- 99 (609)
.....+.+|...+..|+|++|.+.+.++-+..+. + ...+...+.+....|+++.|..++.++.+. .+..
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p---~l~~llaA~aA~~~g~~~~A~~~l~~A~~~------~~~~~ 152 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-P---VVNYLLAAEAAQQRGDEARANQHLERAAEL------ADNDQ 152 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-h---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCcch
Confidence 3445667899999999999999777776554322 2 223444466668999999999999999876 3332
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHH
Q psy10738 100 AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEA 179 (609)
Q Consensus 100 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A 179 (609)
.......+.++...|++++|+..+++..+..+ ....++..++.+|...|+ +++|
T Consensus 153 ~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P------~~~~al~ll~~~~~~~gd--------------------w~~a 206 (398)
T PRK10747 153 LPVEITRVRIQLARNENHAARHGVDKLLEVAP------RHPEVLRLAEQAYIRTGA--------------------WSSL 206 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHHh--------------------HHHH
Confidence 22333458999999999999999999988776 456788889999999999 7777
Q ss_pred HHHHHHHHHHH-----------------------------------HHh-CChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10738 180 IKYYEQNLALM-----------------------------------KEI-NDTAAQGRACGNLGNTYYLLGNFKQAIYYH 223 (609)
Q Consensus 180 ~~~~~~al~~~-----------------------------------~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 223 (609)
+..+.+..+.. +.. ...+....+...++..+...|+.++|...+
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 65554443210 000 001123446677888999999999999999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q psy10738 224 QERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 303 (609)
Q Consensus 224 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 303 (609)
+++++. ..++ . .. +.......+++++++..+++.++..++. +..+..+|.++...|++++|.++|
T Consensus 287 ~~~l~~---~~~~-~---l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~------~~l~l~lgrl~~~~~~~~~A~~~l 351 (398)
T PRK10747 287 LDGLKR---QYDE-R---LV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT------PLLWSTLGQLLMKHGEWQEASLAF 351 (398)
T ss_pred HHHHhc---CCCH-H---HH--HHHhhccCCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888762 2221 1 11 1122234489999999888887666543 678889999999999999999999
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 304 LRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 304 ~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
++++...++ ...+..++.++.+.|+.++|..+|++++.+.
T Consensus 352 e~al~~~P~-------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 352 RAALKQRPD-------AYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHhcCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999987544 2356789999999999999999999998865
No 63
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=1.8e-12 Score=136.35 Aligned_cols=270 Identities=11% Similarity=-0.023 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~ 141 (609)
.....|......|+++.|.+.+.++.+. .+.....+...|.++..+|+++.|..++.++.+..+.. ...
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~-----~l~ 154 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADH------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGND-----NIL 154 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC-----chH
Confidence 4456788888999999999999887776 44455667788999999999999999999987655421 112
Q ss_pred HHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy10738 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIY 221 (609)
Q Consensus 142 ~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 221 (609)
+....+.++...|+ ++.|...+++.++. .|....++..++.++...|++++|+.
T Consensus 155 ~~~~~a~l~l~~~~--------------------~~~Al~~l~~l~~~------~P~~~~~l~ll~~~~~~~~d~~~a~~ 208 (409)
T TIGR00540 155 VEIARTRILLAQNE--------------------LHAARHGVDKLLEM------APRHKEVLKLAEEAYIRSGAWQALDD 208 (409)
T ss_pred HHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 34445899999999 99999999988876 34445688899999999999999988
Q ss_pred HHHHHHHHH---HH-------------h----C-------------ChH---HHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 222 YHQERLKIA---RE-------------F----G-------------DKA---AERRANSNLGNSHIFLGEYQAASEHYKR 265 (609)
Q Consensus 222 ~~~~al~~~---~~-------------~----~-------------~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~ 265 (609)
.+.+..+.. +. . . .+. .....+..+|..+...|++++|...+++
T Consensus 209 ~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~ 288 (409)
T TIGR00540 209 IIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFD 288 (409)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 887766320 00 0 0 000 1235677888999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy10738 266 TLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATK 345 (609)
Q Consensus 266 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~ 345 (609)
+++..++..... ............++.+++++.++++++..+... . ......+|.++...|++++|.++|++
T Consensus 289 ~l~~~pd~~~~~----~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~---~-~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 289 GLKKLGDDRAIS----LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKP---K-CCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred HHhhCCCcccch----hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCCh---h-HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 998766532110 011222333445788888888888886644321 1 35788999999999999999999996
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 346 HLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 346 al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
+..+.. .+... ....++.++..+|+.+.|..
T Consensus 361 a~a~~~----~p~~~-~~~~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 361 VAACKE----QLDAN-DLAMAADAFDQAGDKAEAAA 391 (409)
T ss_pred hHHhhc----CCCHH-HHHHHHHHHHHcCCHHHHHH
Confidence 444331 13333 35589999999999887744
No 64
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.55 E-value=1.2e-12 Score=130.31 Aligned_cols=227 Identities=17% Similarity=0.158 Sum_probs=179.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHH
Q psy10738 98 GEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQ 177 (609)
Q Consensus 98 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 177 (609)
..+..+...|+.|...|++++|..+|.++.++....++....+.++...+.+|... + ++
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~--------------------~~ 91 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-D--------------------PD 91 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-T--------------------HH
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-C--------------------HH
Confidence 33555666678888899999999999999999999998888899999999998777 7 99
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCH
Q psy10738 178 EAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLL-GNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEY 256 (609)
Q Consensus 178 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 256 (609)
+|+.+|++++.++...+.....+.++..+|.+|... |++++|+++|++|++++...+.......++..+|.++...|+|
T Consensus 92 ~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y 171 (282)
T PF14938_consen 92 EAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY 171 (282)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH
Confidence 999999999999999999999999999999999999 9999999999999999999998888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH--c
Q psy10738 257 QAASEHYKRTLVLAQDLG-DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAA--R 333 (609)
Q Consensus 257 ~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~--~ 333 (609)
++|++.|++........+ ........+...+.+++..||+..|...+++.....+...+ ..+......|-.++.. .
T Consensus 172 ~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~-s~E~~~~~~l~~A~~~~D~ 250 (282)
T PF14938_consen 172 EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS-SREYKFLEDLLEAYEEGDV 250 (282)
T ss_dssp HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT-SHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-cHHHHHHHHHHHHHHhCCH
Confidence 999999999877543333 23334456677888999999999999999988777655444 3345566666666553 3
Q ss_pred CChHHHHHHHHHH
Q psy10738 334 GNHEKALYFATKH 346 (609)
Q Consensus 334 g~~~~A~~~~~~a 346 (609)
..+..|+.-|...
T Consensus 251 e~f~~av~~~d~~ 263 (282)
T PF14938_consen 251 EAFTEAVAEYDSI 263 (282)
T ss_dssp CCHHHHCHHHTTS
T ss_pred HHHHHHHHHHccc
Confidence 3455555555443
No 65
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.55 E-value=2.1e-12 Score=128.52 Aligned_cols=232 Identities=20% Similarity=0.263 Sum_probs=186.5
Q ss_pred chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q psy10738 55 DLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLN 134 (609)
Q Consensus 55 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 134 (609)
+.+..+..|...|+.|...|++++|...|.++.....+.++....+.++...+.+|... ++++|+.+|+++++++...+
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G 108 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG 108 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC
Confidence 34445667777899999999999999999999999999999999999999999998776 99999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHc-ccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHc
Q psy10738 135 DKLSEGRALYNLGNVYHAK-GKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLL 213 (609)
Q Consensus 135 d~~~~~~~~~~lg~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~ 213 (609)
.....+.++..+|.+|... |+ +++|+++|++|++++...+.......++..+|.++..+
T Consensus 109 ~~~~aA~~~~~lA~~ye~~~~d--------------------~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 109 RFSQAAKCLKELAEIYEEQLGD--------------------YEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT----------------------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 9999999999999999999 99 99999999999999999998888899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 214 GNFKQAIYYHQERLKIAREFGD-KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL 292 (609)
Q Consensus 214 g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 292 (609)
|+|++|+..|++........+. .......+...+.+++..|++..|...+++.....+...+. ........|-.++..
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s-~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS-REYKFLEDLLEAYEE 247 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS-HHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc-HHHHHHHHHHHHHHh
Confidence 9999999999998776543332 33444566788889999999999999999888776655442 345566666666653
Q ss_pred --hCCHHHHHHHHHHHHH
Q psy10738 293 --LRDYPTAIDYHLRHLI 308 (609)
Q Consensus 293 --~g~~~~A~~~~~~al~ 308 (609)
...+++|+.-|.....
T Consensus 248 ~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 248 GDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp T-CCCHHHHCHHHTTSS-
T ss_pred CCHHHHHHHHHHHcccCc
Confidence 3457777777665443
No 66
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.51 E-value=8e-12 Score=139.50 Aligned_cols=346 Identities=11% Similarity=-0.041 Sum_probs=190.3
Q ss_pred hhhhHhhhcCCCcchhHHHHH------------HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH
Q psy10738 5 NISSSDSQSGGADGGNMCLEL------------ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFY 72 (609)
Q Consensus 5 ~Lg~~~~~~g~~~~a~~~~~l------------~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~ 72 (609)
.+..++...|+.+.|...++. ...|..+...|++++|++.|+++++..|+++. ++..++..|..
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~----~l~gLa~~y~~ 148 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPD----LISGMIMTQAD 148 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHhh
Confidence 455666777888888875543 33377888999999999999999999999865 55677899999
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 73 LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHA 152 (609)
Q Consensus 73 ~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~ 152 (609)
.++.++|+..+++++.. .+... .+..++.++...++..+|+..++++++..+.. ..++..+..+...
T Consensus 149 ~~q~~eAl~~l~~l~~~------dp~~~-~~l~layL~~~~~~~~~AL~~~ekll~~~P~n------~e~~~~~~~~l~~ 215 (822)
T PRK14574 149 AGRGGVVLKQATELAER------DPTVQ-NYMTLSYLNRATDRNYDALQASSEAVRLAPTS------EEVLKNHLEILQR 215 (822)
T ss_pred cCCHHHHHHHHHHhccc------CcchH-HHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 99999999999998887 34322 23455666666788877999999999886622 2222222232222
Q ss_pred cccccccCC--CCCCCCCc--------------------------hHhHHhHHHHHHHHHHHHHHHHHhCC-hHHHHH--
Q psy10738 153 KGKAIGKVG--QQDPGEYP--------------------------EEVKVCLQEAIKYYEQNLALMKEIND-TAAQGR-- 201 (609)
Q Consensus 153 ~g~~~~~~~--~~~~~~~~--------------------------~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~-- 201 (609)
.|-...+.. ...|.-+. .+.....+.|+.-+++.+........ .+....
T Consensus 216 ~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~ 295 (822)
T PRK14574 216 NRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRAR 295 (822)
T ss_pred cCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHH
Confidence 222100000 00110010 11111233344444333332221110 011122
Q ss_pred ---------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q psy10738 202 ---------------------------------ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGN 248 (609)
Q Consensus 202 ---------------------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 248 (609)
+....|..|...++.++|+..|++++.-................|-.
T Consensus 296 ~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~y 375 (822)
T PRK14574 296 IDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYY 375 (822)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHH
Confidence 33344555555555555555555544332211011111222344555
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHH-c--------CCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhH
Q psy10738 249 SHIFLGEYQAASEHYKRTLVLAQD-L--------GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 319 (609)
Q Consensus 249 ~~~~~g~~~~A~~~~~~al~~~~~-~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 319 (609)
+|+..++|++|..++++.....+- . ........+...++.++...|++.+|.+.+++.+..++. .
T Consensus 376 A~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~------n 449 (822)
T PRK14574 376 SLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA------N 449 (822)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------C
Confidence 555666666666666655543331 0 011223355555666666666666666666666555443 2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCC
Q psy10738 320 GRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTND 379 (609)
Q Consensus 320 ~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~a 379 (609)
..+...+|.++...|.+.+|...++.+..+. +....+...++.++..+|+...+
T Consensus 450 ~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~------P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 450 QNLRIALASIYLARDLPRKAEQELKAVESLA------PRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC------CccHHHHHHHHHHHHhhhhHHHH
Confidence 3355566666666666666666665555442 44455666666666666665443
No 67
>KOG0550|consensus
Probab=99.50 E-value=8e-13 Score=129.06 Aligned_cols=270 Identities=17% Similarity=0.156 Sum_probs=217.3
Q ss_pred hhhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH
Q psy10738 5 NISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFY 72 (609)
Q Consensus 5 ~Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~ 72 (609)
.+|..+.....+..++..+..+.. +..+...|+|++|....++.+++.++... .+...+.++..
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k----~~~r~~~c~~a 129 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSK----GQLREGQCHLA 129 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccc----cccchhhhhhh
Confidence 345666666666666666655544 77888999999999999999999887644 56677888888
Q ss_pred hCCHHHHHHHHHHHH------------HHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHH
Q psy10738 73 LGDYQKAMQYHKQDL------------TLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEG 140 (609)
Q Consensus 73 ~g~~~~A~~~~~~al------------~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~ 140 (609)
+++..+|.+.++..- .++......|....+-..-+.++...|++++|....-..+++.. ...
T Consensus 130 ~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~------~n~ 203 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA------TNA 203 (486)
T ss_pred hHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc------chh
Confidence 888777776665221 11111122355566777788999999999999998888887766 677
Q ss_pred HHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHcC
Q psy10738 141 RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIND------TAAQGRACGNLGNTYYLLG 214 (609)
Q Consensus 141 ~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~lg~~~~~~g 214 (609)
.+++..|.+++..++ .+.|+.+|++++.+.+...+ .+.....+..-|+-.+..|
T Consensus 204 ~al~vrg~~~yy~~~--------------------~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G 263 (486)
T KOG0550|consen 204 EALYVRGLCLYYNDN--------------------ADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNG 263 (486)
T ss_pred HHHHhcccccccccc--------------------hHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhcc
Confidence 899999999999999 99999999999988665432 2334567778899999999
Q ss_pred CHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhC
Q psy10738 215 NFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR 294 (609)
Q Consensus 215 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 294 (609)
+|..|.++|.++|.+.+.+.. ..+..|.+.|.+...+|+..+|+.-.+.++.+.+.. ..++...|.++..++
T Consensus 264 ~y~~A~E~Yteal~idP~n~~--~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy------ikall~ra~c~l~le 335 (486)
T KOG0550|consen 264 NYRKAYECYTEALNIDPSNKK--TNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY------IKALLRRANCHLALE 335 (486)
T ss_pred chhHHHHHHHHhhcCCccccc--hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH------HHHHHHHHHHHHHHH
Confidence 999999999999999888544 445699999999999999999999999999998874 889999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy10738 295 DYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 295 ~~~~A~~~~~~al~~~~~ 312 (609)
+|++|.+.|+++++....
T Consensus 336 ~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 999999999999987665
No 68
>KOG1125|consensus
Probab=99.50 E-value=4.2e-13 Score=136.60 Aligned_cols=256 Identities=17% Similarity=0.122 Sum_probs=199.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q psy10738 64 SQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRAL 143 (609)
Q Consensus 64 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~ 143 (609)
+..|..++..|+..+|.-.|+.++.. .|..+.+|..||.+....++-..|+..+++++++.+ ....++
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkq------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP------~NleaL 356 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQ------DPQHAEAWQKLGITQAENENEQNAISALRRCLELDP------TNLEAL 356 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhh------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC------ccHHHH
Confidence 56789999999999999999999998 899999999999999999999999999999999987 677899
Q ss_pred HHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH-----------HHH
Q psy10738 144 YNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNT-----------YYL 212 (609)
Q Consensus 144 ~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~-----------~~~ 212 (609)
..||..|...|. -.+|..++.+=+..-... ..+... ...
T Consensus 357 maLAVSytNeg~--------------------q~~Al~~L~~Wi~~~p~y----------~~l~~a~~~~~~~~~~s~~~ 406 (579)
T KOG1125|consen 357 MALAVSYTNEGL--------------------QNQALKMLDKWIRNKPKY----------VHLVSAGENEDFENTKSFLD 406 (579)
T ss_pred HHHHHHHhhhhh--------------------HHHHHHHHHHHHHhCccc----------hhccccCccccccCCcCCCC
Confidence 999999999998 888998888766542111 000000 000
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 213 LGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL 292 (609)
Q Consensus 213 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 292 (609)
...+..-.++|..+....+... -..+...||.+|...|+|++|+.+|+.|+...|.. ...|..||-++..
T Consensus 407 ~~~l~~i~~~fLeaa~~~~~~~----DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd------~~lWNRLGAtLAN 476 (579)
T KOG1125|consen 407 SSHLAHIQELFLEAARQLPTKI----DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND------YLLWNRLGATLAN 476 (579)
T ss_pred HHHHHHHHHHHHHHHHhCCCCC----ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch------HHHHHHhhHHhcC
Confidence 0011122233333322222111 12388899999999999999999999999987763 7799999999999
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCch----HHHHHHHHHH
Q psy10738 293 LRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLG----QVTAQMNVTD 368 (609)
Q Consensus 293 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~----~~~a~~~la~ 368 (609)
..+.++|+..|.+|+++-+. ..++.++||..+..+|.|++|..+|-.|+.+.+....... ...++..|-.
T Consensus 477 ~~~s~EAIsAY~rALqLqP~------yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~ 550 (579)
T KOG1125|consen 477 GNRSEEAISAYNRALQLQPG------YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRL 550 (579)
T ss_pred CcccHHHHHHHHHHHhcCCC------eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHH
Confidence 99999999999999998765 5679999999999999999999999999999887433222 2456666666
Q ss_pred HHHHcCCCC
Q psy10738 369 LRKALGMST 377 (609)
Q Consensus 369 l~~~~g~~~ 377 (609)
++..+++++
T Consensus 551 als~~~~~D 559 (579)
T KOG1125|consen 551 ALSAMNRSD 559 (579)
T ss_pred HHHHcCCch
Confidence 677777654
No 69
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.49 E-value=2.3e-11 Score=139.51 Aligned_cols=319 Identities=15% Similarity=0.043 Sum_probs=203.5
Q ss_pred hhhhhhHhhhcCCCcchhHHHHHHHH-------------HHHHHhcCChHHHHHHHHHHHHhCCc-chhHHHHHHHHHHH
Q psy10738 3 VGNISSSDSQSGGADGGNMCLELALE-------------GERLCKAGDCRAGVAFFQAAIQAGTD-DLRTLSAIYSQLGN 68 (609)
Q Consensus 3 l~~Lg~~~~~~g~~~~a~~~~~l~~~-------------g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~a~~~~~lg~ 68 (609)
++.|-.++.+.|+.+.|...+..... -..+.+.|++++|..+|++..+.+.. | ...|..+..
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd----vvTynaLI~ 515 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN----VHTFGALID 515 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC----HHHHHHHHH
Confidence 45566677777777777776665544 35677788888888888888765432 2 336777778
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q psy10738 69 AYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148 (609)
Q Consensus 69 ~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~ 148 (609)
.|...|++++|+..|...... +-.+ ....|..+...|...|++++|...+.+......... ....+|..+..
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~----Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~---PD~vTynaLI~ 587 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSK----NVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID---PDHITVGALMK 587 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC---CcHHHHHHHHH
Confidence 888888888888887776543 2122 245677778888888888888888877654311111 12346677777
Q ss_pred HHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10738 149 VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLK 228 (609)
Q Consensus 149 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 228 (609)
.|...|+ +++|.+.|++..+. + ......+|..+...|...|++++|+..|.+...
T Consensus 588 ay~k~G~--------------------ldeA~elf~~M~e~----g-i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 588 ACANAGQ--------------------VDRAKEVYQMIHEY----N-IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHCCC--------------------HHHHHHHHHHHHHc----C-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 7888888 88888888765543 1 111235677777788888888888888877654
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy10738 229 IAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 308 (609)
Q Consensus 229 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 308 (609)
.- -.+. ...|..+...|...|++++|.+++.+..+... .....++..+...|.+.|++++|...|++...
T Consensus 643 ~G---v~PD--~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~-----~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 643 KG---VKPD--EVFFSALVDVAGHAGDLDKAFEILQDARKQGI-----KLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred cC---CCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 21 0111 23666777777888888888877777654211 11244677777788888888888887776543
Q ss_pred HHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCC
Q psy10738 309 IAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTN 378 (609)
Q Consensus 309 ~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~ 378 (609)
. +- ......|..+...|.+.|++++|..++++... .|-.+. ...+..+...+...|+.+.
T Consensus 713 ~----g~-~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~----~Gi~Pd-~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 713 I----KL-RPTVSTMNALITALCEGNQLPKALEVLSEMKR----LGLCPN-TITYSILLVASERKDDADV 772 (1060)
T ss_pred c----CC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHHCCCHHH
Confidence 2 11 11234577777777888888888877776543 222233 2334444455555555443
No 70
>KOG1174|consensus
Probab=99.46 E-value=9.8e-12 Score=121.33 Aligned_cols=297 Identities=14% Similarity=0.077 Sum_probs=237.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHH--HHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhH
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAA--IQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGE 99 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~a--l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~ 99 (609)
++.+...+...+..++...|...+--+ ...-|++.. .+..+|.+++..|++.+|+..|+++.-+ ++..
T Consensus 196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~Nvh----Ll~~lak~~~~~Gdn~~a~~~Fe~~~~~------dpy~ 265 (564)
T KOG1174|consen 196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEH----LMMALGKCLYYNGDYFQAEDIFSSTLCA------NPDN 265 (564)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHH----HHHHHhhhhhhhcCchHHHHHHHHHhhC------Chhh
Confidence 445555677777777777666655444 344566643 7788999999999999999999999988 8888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHH
Q psy10738 100 AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEA 179 (609)
Q Consensus 100 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A 179 (609)
..+.-..|..+...|+++.-.......+.+.. ..+.-++.-|.+.+...+ +..|
T Consensus 266 i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~------~ta~~wfV~~~~l~~~K~--------------------~~rA 319 (564)
T KOG1174|consen 266 VEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK------YTASHWFVHAQLLYDEKK--------------------FERA 319 (564)
T ss_pred hhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh------cchhhhhhhhhhhhhhhh--------------------HHHH
Confidence 88888999999999999887777666666554 333445566677777778 9999
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 180 IKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAA 259 (609)
Q Consensus 180 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 259 (609)
+.+.++++.. .+....++...|.++...|+.++|+-.|+.|..+.+-.-+ +|-.|-.+|...|.+.+|
T Consensus 320 L~~~eK~I~~------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~------~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 320 LNFVEKCIDS------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE------IYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred HHHHHHHhcc------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH------HHHHHHHHHHhhchHHHH
Confidence 9999999987 4555678999999999999999999999999988765433 899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH-HHHH-HhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChH
Q psy10738 260 SEHYKRTLVLAQDLGDRAVEAQACYSLG-NTYT-LLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHE 337 (609)
Q Consensus 260 ~~~~~~al~~~~~~~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~ 337 (609)
......++...+.. +.++..+| .++. .-.--++|.+++++++.+.+. ...+-..+|+++...|.++
T Consensus 388 ~~~An~~~~~~~~s------A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~------Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 388 NALANWTIRLFQNS------ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI------YTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred HHHHHHHHHHhhcc------hhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc------cHHHHHHHHHHHHhhCccc
Confidence 99999999988875 66777675 3333 233468999999999987654 4557888999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCCCchh
Q psy10738 338 KALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLSPDSL 385 (609)
Q Consensus 338 ~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~~~~~ 385 (609)
.++..+++++..+ .....+..||++..+.+.+.+++...+.
T Consensus 456 D~i~LLe~~L~~~-------~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 456 DIIKLLEKHLIIF-------PDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred hHHHHHHHHHhhc-------cccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999999876 3456788899999999998888765444
No 71
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.43 E-value=1e-10 Score=134.28 Aligned_cols=297 Identities=13% Similarity=0.033 Sum_probs=228.2
Q ss_pred chhhhhhHhhhcCCCcchhHHHHHHHH-------------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Q psy10738 2 SVGNISSSDSQSGGADGGNMCLELALE-------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGN 68 (609)
Q Consensus 2 ~l~~Lg~~~~~~g~~~~a~~~~~l~~~-------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~ 68 (609)
+++.|...|.+.|+.+.|..++..... ...|++.|++++|+.+|......+-. +. ...|..+..
T Consensus 474 tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~-PD--~vTYnsLI~ 550 (1060)
T PLN03218 474 LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK-PD--RVVFNALIS 550 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC-CC--HHHHHHHHH
Confidence 467788899999999999888876653 45789999999999999999875421 11 347899999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q psy10738 69 AYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148 (609)
Q Consensus 69 ~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~ 148 (609)
.|...|++++|.+.+.+...... +-.+ ....|..+...|...|++++|.+.|++..+.. .......|..+..
T Consensus 551 a~~k~G~~deA~~lf~eM~~~~~--gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~g-----i~p~~~tynsLI~ 622 (1060)
T PLN03218 551 ACGQSGAVDRAFDVLAEMKAETH--PIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYN-----IKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHhcC--CCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----CCCChHHHHHHHH
Confidence 99999999999999998765311 1122 24678888889999999999999999876531 1123457889999
Q ss_pred HHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10738 149 VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLK 228 (609)
Q Consensus 149 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 228 (609)
.|...|+ +++|+..|.+.... +-.+. ..+|..+...|...|++++|.+++.+..+
T Consensus 623 ay~k~G~--------------------~deAl~lf~eM~~~----Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 623 SCSQKGD--------------------WDFALSIYDDMKKK----GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHhcCC--------------------HHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999 99999999886543 22222 45788899999999999999999998765
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy10738 229 IAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 308 (609)
Q Consensus 229 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 308 (609)
.-. .....+|..+...|.+.|++++|...|++..... . . ....+|..+...|.+.|++++|++++.+...
T Consensus 678 ~G~-----~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g--~-~--PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 678 QGI-----KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK--L-R--PTVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred cCC-----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--C-C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 311 1112478899999999999999999998765421 1 1 1246788999999999999999999998753
Q ss_pred HHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy10738 309 IAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349 (609)
Q Consensus 309 ~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l 349 (609)
. +-. .....|..+...+.+.|++++|..++.+..+.
T Consensus 748 ~----Gi~-Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 748 L----GLC-PNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred c----CCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 2 211 12346677778999999999999999987653
No 72
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.43 E-value=6.6e-12 Score=141.64 Aligned_cols=252 Identities=12% Similarity=0.031 Sum_probs=145.8
Q ss_pred chhhhhhHhhhcCCCcchhHHHHH---------HHHHHHHHhcCChHHHHHHHHHHHHhCCc-chhHH------------
Q psy10738 2 SVGNISSSDSQSGGADGGNMCLEL---------ALEGERLCKAGDCRAGVAFFQAAIQAGTD-DLRTL------------ 59 (609)
Q Consensus 2 ~l~~Lg~~~~~~g~~~~a~~~~~l---------~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~------------ 59 (609)
+++.|...|.+.|+.+.|...+.. ......+.+.|++++|+.+|++.++.+.. +....
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 356677788888888877776642 23356677788888888888887765321 10000
Q ss_pred -------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHH
Q psy10738 60 -------------------SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAM 120 (609)
Q Consensus 60 -------------------a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~ 120 (609)
..++..+...|...|++++|...|+... .....+|..+...|...|++++|+
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---------~~~~vt~n~li~~y~~~g~~~eA~ 310 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---------EKTTVAWNSMLAGYALHGYSEEAL 310 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---------CCChhHHHHHHHHHHhCCCHHHHH
Confidence 1234567788888899998888887542 124567888888888888888888
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHH
Q psy10738 121 VCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQG 200 (609)
Q Consensus 121 ~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 200 (609)
..|.+.... +-. ....++..+...+...|+ +++|...+...++.. - ....
T Consensus 311 ~lf~~M~~~----g~~-pd~~t~~~ll~a~~~~g~--------------------~~~a~~i~~~m~~~g----~-~~d~ 360 (697)
T PLN03081 311 CLYYEMRDS----GVS-IDQFTFSIMIRIFSRLAL--------------------LEHAKQAHAGLIRTG----F-PLDI 360 (697)
T ss_pred HHHHHHHHc----CCC-CCHHHHHHHHHHHHhccc--------------------hHHHHHHHHHHHHhC----C-CCCe
Confidence 888876542 111 122356666777777777 666666666554431 0 1112
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHH
Q psy10738 201 RACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA 280 (609)
Q Consensus 201 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 280 (609)
.++..+...|.+.|++++|...|++..+ .+ ..+|+.+...|...|+.++|++.|++...... . ...
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d----~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~----~-Pd~ 426 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMPR-----KN----LISWNALIAGYGNHGRGTKAVEMFERMIAEGV----A-PNH 426 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCCC-----CC----eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C-CCH
Confidence 3455555556666666666655554321 00 12455555555555555555555555432110 0 012
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 281 QACYSLGNTYTLLRDYPTAIDYHLRH 306 (609)
Q Consensus 281 ~~~~~la~~~~~~g~~~~A~~~~~~a 306 (609)
.++..+...+...|..++|..+|+..
T Consensus 427 ~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 427 VTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 23444444444455555555554443
No 73
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.43 E-value=2.7e-11 Score=126.81 Aligned_cols=253 Identities=12% Similarity=0.002 Sum_probs=189.2
Q ss_pred hhHhhhcCCCcchhHHHH------------HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhC
Q psy10738 7 SSSDSQSGGADGGNMCLE------------LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLG 74 (609)
Q Consensus 7 g~~~~~~g~~~~a~~~~~------------l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g 74 (609)
|......|+++.|..+.. +.+.+......|+++.|..+|.++.+..|++.. ......+.++...|
T Consensus 91 gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~---~~~l~~a~l~l~~g 167 (398)
T PRK10747 91 ALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQL---PVEITRVRIQLARN 167 (398)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchH---HHHHHHHHHHHHCC
Confidence 334444566665554443 233367779999999999999999998887532 12234588999999
Q ss_pred CHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----------------------
Q psy10738 75 DYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQ---------------------- 132 (609)
Q Consensus 75 ~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~---------------------- 132 (609)
++++|+..+++..+. .|....++..++.+|...|++++|+..+.+..+....
T Consensus 168 ~~~~Al~~l~~~~~~------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 168 ENHAARHGVDKLLEV------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred CHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888 7778899999999999999999999777665532100
Q ss_pred cCC--------------cHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHH
Q psy10738 133 LND--------------KLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAA 198 (609)
Q Consensus 133 ~~d--------------~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 198 (609)
..+ ......+...++..+...|+ .++|...++++++. ...+.
T Consensus 242 ~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~--------------------~~~A~~~L~~~l~~----~~~~~ 297 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDD--------------------HDTAQQIILDGLKR----QYDER 297 (398)
T ss_pred hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHhc----CCCHH
Confidence 000 01124466677888888888 99999999888762 11222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHH
Q psy10738 199 QGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV 278 (609)
Q Consensus 199 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 278 (609)
....+ +. ...++++++++.+++.++..++... .+..+|.++...|++++|.++|+++++..+.
T Consensus 298 l~~l~---~~--l~~~~~~~al~~~e~~lk~~P~~~~------l~l~lgrl~~~~~~~~~A~~~le~al~~~P~------ 360 (398)
T PRK10747 298 LVLLI---PR--LKTNNPEQLEKVLRQQIKQHGDTPL------LWSTLGQLLMKHGEWQEASLAFRAALKQRPD------ 360 (398)
T ss_pred HHHHH---hh--ccCCChHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------
Confidence 22222 22 2449999999999988876554443 7888999999999999999999999988654
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy10738 279 EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 310 (609)
Q Consensus 279 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 310 (609)
...+..++.++...|+.++|..+|++++.+.
T Consensus 361 -~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 361 -AYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4556789999999999999999999998765
No 74
>KOG4162|consensus
Probab=99.40 E-value=1.8e-10 Score=121.12 Aligned_cols=322 Identities=14% Similarity=0.118 Sum_probs=208.6
Q ss_pred hhhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHHH
Q psy10738 5 NISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAG--TDDLRTLSAIYSQLGNAY 70 (609)
Q Consensus 5 ~Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~a~~~~~lg~~~ 70 (609)
.|.-++...|++..+..+++.+.. +..+...|.-..|+.+++..+... |.++. ..+..-..++
T Consensus 328 ~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s---~~Lmasklc~ 404 (799)
T KOG4162|consen 328 HLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS---VLLMASKLCI 404 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch---HHHHHHHHHH
Confidence 345556666777766666665443 555666677777777777777766 44433 2333334455
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 71 FYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGK-----------YDEAMVCCKRHLEISRQLNDKLSE 139 (609)
Q Consensus 71 ~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~-----------~~~A~~~~~~al~l~~~~~d~~~~ 139 (609)
...+.+++++.|..+++..+... .....+.++..+|.+|..+-. ..+++..++++++..+ ..
T Consensus 405 e~l~~~eegldYA~kai~~~~~~-~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~------~d 477 (799)
T KOG4162|consen 405 ERLKLVEEGLDYAQKAISLLGGQ-RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP------TD 477 (799)
T ss_pred hchhhhhhHHHHHHHHHHHhhhh-hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC------CC
Confidence 56788888888888888765322 233345566666666654321 3344555555544433 22
Q ss_pred HHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHH
Q psy10738 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQA 219 (609)
Q Consensus 140 ~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 219 (609)
..+.++++.-|...++ .+.|..+..+++++. ....+.+|..++.++...+++.+|
T Consensus 478 p~~if~lalq~A~~R~--------------------l~sAl~~~~eaL~l~-----~~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQ--------------------LTSALDYAREALALN-----RGDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred chHHHHHHHHHHHHHh--------------------HHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHhhhhhhHHH
Confidence 3455666666666666 666666666666552 122334555555555555555555
Q ss_pred HHHHHHHHHHHHHh--------------CCh-------------------------------------------------
Q psy10738 220 IYYHQERLKIAREF--------------GDK------------------------------------------------- 236 (609)
Q Consensus 220 ~~~~~~al~~~~~~--------------~~~------------------------------------------------- 236 (609)
+....-+++-.+.+ ++.
T Consensus 533 l~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~ 612 (799)
T KOG4162|consen 533 LDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIST 612 (799)
T ss_pred HHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchh
Confidence 55555444433320 000
Q ss_pred ----------------------------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHH
Q psy10738 237 ----------------------------------AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQA 282 (609)
Q Consensus 237 ----------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 282 (609)
......|...+..+...++.++|..++.++-.+.+. .+..
T Consensus 613 sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l------~~~~ 686 (799)
T KOG4162|consen 613 SRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL------SASV 686 (799)
T ss_pred hHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh------hHHH
Confidence 001223445666777777777887777777777655 4788
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHH--HHHHHHHHHHHcCCCchHH
Q psy10738 283 CYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALY--FATKHLEISKQLGDPLGQV 360 (609)
Q Consensus 283 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~--~~~~al~l~~~~~~~~~~~ 360 (609)
|+..|.++...|++.+|.+.|..|+.+.+. ...+...+|.++...|+..-|.. ++..++++. +...
T Consensus 687 ~~~~G~~~~~~~~~~EA~~af~~Al~ldP~------hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d------p~n~ 754 (799)
T KOG4162|consen 687 YYLRGLLLEVKGQLEEAKEAFLVALALDPD------HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD------PLNH 754 (799)
T ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC------CCCH
Confidence 899999999999999999999999988765 34578889999999998888877 888888876 7778
Q ss_pred HHHHHHHHHHHHcCCCCCC
Q psy10738 361 TAQMNVTDLRKALGMSTND 379 (609)
Q Consensus 361 ~a~~~la~l~~~~g~~~~a 379 (609)
.+++.+|.+.++.|+...|
T Consensus 755 eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 755 EAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred HHHHHHHHHHHHccchHHH
Confidence 9999999999999997755
No 75
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.40 E-value=1.6e-10 Score=129.22 Aligned_cols=327 Identities=10% Similarity=-0.045 Sum_probs=213.9
Q ss_pred hhhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH
Q psy10738 5 NISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFY 72 (609)
Q Consensus 5 ~Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~ 72 (609)
.+|.++...|++++|+..+..+++ +..+...++.++|+..+++++...|.... +..++.++..
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~-----~l~layL~~~ 181 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN-----YMTLSYLNRA 181 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH-----HHHHHHHHHh
Confidence 347788999999999998887665 67788899999999999999999887432 2334555555
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------------------
Q psy10738 73 LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRH-------------------------- 126 (609)
Q Consensus 73 ~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a-------------------------- 126 (609)
.++..+|+..++++++. .|....++..+..++...|-...|.+...+.
T Consensus 182 ~~~~~~AL~~~ekll~~------~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~ 255 (822)
T PRK14574 182 TDRNYDALQASSEAVRL------APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVL 255 (822)
T ss_pred cchHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccc
Confidence 67777799999999988 5666666666666666666554444443321
Q ss_pred ---------------HHHHHHc----CC-c---HHHHHHHHHHHHHHHHcccccccCC----CC-CCCCCch---HhHHh
Q psy10738 127 ---------------LEISRQL----ND-K---LSEGRALYNLGNVYHAKGKAIGKVG----QQ-DPGEYPE---EVKVC 175 (609)
Q Consensus 127 ---------------l~l~~~~----~d-~---~~~~~~~~~lg~~~~~~g~~~~~~~----~~-~~~~~~~---~~~~~ 175 (609)
+.....+ +. + .....+....-.++...|++..... .. ...+.|. .+..+
T Consensus 256 ~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad 335 (822)
T PRK14574 256 PTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS 335 (822)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 1111110 00 1 0111111111122222222000000 00 0001111 11111
Q ss_pred -------HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-h--------CChHHH
Q psy10738 176 -------LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE-F--------GDKAAE 239 (609)
Q Consensus 176 -------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~--------~~~~~~ 239 (609)
.++|+..|..++.-.......+........|-..|...++|++|..++++..+..+- . ......
T Consensus 336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 444555554443321110011222334577888899999999999999998875441 0 112334
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhH
Q psy10738 240 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 319 (609)
Q Consensus 240 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 319 (609)
..+...++.++...|++.+|++.+++.+...|.. ..+...+|.++...|.+.+|...++.++.+.+. .
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n------~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~------~ 483 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN------QNLRIALASIYLARDLPRKAEQELKAVESLAPR------S 483 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc------c
Confidence 5888899999999999999999999998888764 778889999999999999999999888877544 3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcC
Q psy10738 320 GRACWSLGNAHAARGNHEKALYFATKHLEISKQLG 354 (609)
Q Consensus 320 ~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~ 354 (609)
..+...+|.++..+|++.+|.....+.++...+-.
T Consensus 484 ~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 484 LILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 55888999999999999999999999988774433
No 76
>KOG0495|consensus
Probab=99.37 E-value=1.3e-10 Score=119.66 Aligned_cols=264 Identities=13% Similarity=0.025 Sum_probs=154.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
+..+...|+...|...+.+|++.+|++.+ ++..--.+.+...+++.|..++.++... .....+|+.-+.
T Consensus 591 ake~w~agdv~~ar~il~~af~~~pnsee----iwlaavKle~en~e~eraR~llakar~~-------sgTeRv~mKs~~ 659 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEANPNSEE----IWLAAVKLEFENDELERARDLLAKARSI-------SGTERVWMKSAN 659 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCCcHH----HHHHHHHHhhccccHHHHHHHHHHHhcc-------CCcchhhHHHhH
Confidence 44455556666666666666666665433 4444445555566666666666665543 233456666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHH
Q psy10738 109 TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLA 188 (609)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 188 (609)
....+++.++|+..++++++.++ .....|..+|.++..+++ .+.|...|...++
T Consensus 660 ~er~ld~~eeA~rllEe~lk~fp------~f~Kl~lmlGQi~e~~~~--------------------ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 660 LERYLDNVEEALRLLEEALKSFP------DFHKLWLMLGQIEEQMEN--------------------IEMAREAYLQGTK 713 (913)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCC------chHHHHHHHhHHHHHHHH--------------------HHHHHHHHHhccc
Confidence 66677777777777777777666 555667777777777777 6777766666655
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy10738 189 LMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV 268 (609)
Q Consensus 189 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 268 (609)
.+ +.....|..++.+-...|+.-.|...++++.--.++... .|.....+-+..|+.+.|...+.+|++
T Consensus 714 ~c------P~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~------lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 714 KC------PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNAL------LWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred cC------CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch------hHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 53 333446666666666677777777777666554443332 445555566667777777777777776
Q ss_pred HHHHcCCcHH------------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHH
Q psy10738 269 LAQDLGDRAV------------------------EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACW 324 (609)
Q Consensus 269 ~~~~~~~~~~------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 324 (609)
-++..+-.+. ...++..+|..+....++++|.++|.+++.+.+++|| +|.
T Consensus 782 ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD------~wa 855 (913)
T KOG0495|consen 782 ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD------AWA 855 (913)
T ss_pred hCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch------HHH
Confidence 6554432111 1233444555555555555555555555555555444 444
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q psy10738 325 SLGNAHAARGNHEKALYFATKHL 347 (609)
Q Consensus 325 ~La~~~~~~g~~~~A~~~~~~al 347 (609)
.+-..+...|.-++-.+.+.+..
T Consensus 856 ~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 856 WFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHh
Confidence 44445555555544444444443
No 77
>PLN02789 farnesyltranstransferase
Probab=99.37 E-value=9.1e-11 Score=117.61 Aligned_cols=207 Identities=10% Similarity=0.025 Sum_probs=171.8
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q psy10738 32 LCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLG-DYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTL 110 (609)
Q Consensus 32 ~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~ 110 (609)
+...+.+++|+..+.++|+++|++.. +|...|.++..+| ++++++.++.+++.. .+....++...+.++
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~yt----aW~~R~~iL~~L~~~l~eeL~~~~~~i~~------npknyqaW~~R~~~l 116 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYT----VWHFRRLCLEALDADLEEELDFAEDVAED------NPKNYQIWHHRRWLA 116 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHH----HHHHHHHHHHHcchhHHHHHHHHHHHHHH------CCcchHHhHHHHHHH
Confidence 56678999999999999999999854 8899999999998 689999999999998 778888999999999
Q ss_pred HHcCCH--HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHH
Q psy10738 111 KVMGKY--DEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLA 188 (609)
Q Consensus 111 ~~~g~~--~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 188 (609)
...|+. ++++.++.+++++.+ ....++...|.++...|+ ++++++++.++++
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dp------kNy~AW~~R~w~l~~l~~--------------------~~eeL~~~~~~I~ 170 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDA------KNYHAWSHRQWVLRTLGG--------------------WEDELEYCHQLLE 170 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHhhh--------------------HHHHHHHHHHHHH
Confidence 999874 788999999998876 667799999999999999 9999999999998
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----hCCHH
Q psy10738 189 LMKEINDTAAQGRACGNLGNTYYLL---GNF----KQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIF----LGEYQ 257 (609)
Q Consensus 189 ~~~~~~~~~~~~~~~~~lg~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~ 257 (609)
. .+....++++.+.+.... |.+ ++++.+..+++.+.+.+.. +|..++.++.. +++..
T Consensus 171 ~------d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~S------aW~Yl~~ll~~~~~~l~~~~ 238 (320)
T PLN02789 171 E------DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNES------PWRYLRGLFKDDKEALVSDP 238 (320)
T ss_pred H------CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcC------HHHHHHHHHhcCCcccccch
Confidence 7 344466888888887765 333 5788999999999888777 88888888877 45667
Q ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 258 AASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL 292 (609)
Q Consensus 258 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 292 (609)
+|+..+.+++...+. ...++..|+.+|..
T Consensus 239 ~~~~~~~~~~~~~~~------s~~al~~l~d~~~~ 267 (320)
T PLN02789 239 EVSSVCLEVLSKDSN------HVFALSDLLDLLCE 267 (320)
T ss_pred hHHHHHHHhhcccCC------cHHHHHHHHHHHHh
Confidence 788888877663222 25677778888875
No 78
>KOG4162|consensus
Probab=99.37 E-value=2.2e-10 Score=120.46 Aligned_cols=290 Identities=17% Similarity=0.096 Sum_probs=209.0
Q ss_pred hHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHH
Q psy10738 38 CRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYD 117 (609)
Q Consensus 38 ~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~ 117 (609)
..+++..+++|++.+|.|+. +.++++.-|..+++.+.|+.+.++++++. ....+.+|..++.++...+++.
T Consensus 460 h~kslqale~av~~d~~dp~----~if~lalq~A~~R~l~sAl~~~~eaL~l~-----~~~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPL----VIFYLALQYAEQRQLTSALDYAREALALN-----RGDSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred HHHHHHHHHHHHhcCCCCch----HHHHHHHHHHHHHhHHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHhhhhhhH
Confidence 56899999999999999975 78899999999999999999999999982 3345789999999999999999
Q ss_pred HHHHHHHHHHHHHHHc--------------CCcHHHHHHHHHHHHHHH------H---ccccccc-CCCCCCCCCchHhH
Q psy10738 118 EAMVCCKRHLEISRQL--------------NDKLSEGRALYNLGNVYH------A---KGKAIGK-VGQQDPGEYPEEVK 173 (609)
Q Consensus 118 ~A~~~~~~al~l~~~~--------------~d~~~~~~~~~~lg~~~~------~---~g~~~~~-~~~~~~~~~~~~~~ 173 (609)
+|+....-+++-.+.. ++..........+-.++. . .|...+. .+-.-..+-+.++.
T Consensus 531 ~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~ 610 (799)
T KOG4162|consen 531 EALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAI 610 (799)
T ss_pred HHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccc
Confidence 9999999998876641 222211111111111111 0 1110000 00011111233333
Q ss_pred HhHHHHHHHHHHHHHHHH------Hh-----CC--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Q psy10738 174 VCLQEAIKYYEQNLALMK------EI-----ND--TAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAER 240 (609)
Q Consensus 174 ~~~~~A~~~~~~al~~~~------~~-----~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 240 (609)
+.+..+......-.+.+. .. ++ .......|...+..+...++.++|..++.++-.+.+.. +
T Consensus 611 s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~------~ 684 (799)
T KOG4162|consen 611 STSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS------A 684 (799)
T ss_pred hhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh------H
Confidence 333333333221111100 00 01 11224567778889999999999999999998876443 4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHH--HHHHHHHHHHHhcchhh
Q psy10738 241 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID--YHLRHLIIAQQLMDRVG 318 (609)
Q Consensus 241 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~ 318 (609)
..|+..|.++...|++++|.+.|..|+.+.|.. ..+...+|.++...|+..-|.. .+..++++.+.
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h------v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~------ 752 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH------VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL------ 752 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC------cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC------
Confidence 589999999999999999999999999998874 6788899999999999888888 99999988765
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcC
Q psy10738 319 EGRACWSLGNAHAARGNHEKALYFATKHLEISKQLG 354 (609)
Q Consensus 319 ~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~ 354 (609)
...+|+.+|.++.++|+.++|.++|..|+++.....
T Consensus 753 n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 753 NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 455999999999999999999999999999876554
No 79
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.36 E-value=4.9e-11 Score=134.62 Aligned_cols=285 Identities=11% Similarity=0.001 Sum_probs=169.5
Q ss_pred hhhhhhHhhhcCCCcchhHHHHH---------HHHHHHHHhcCChHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHHHHH
Q psy10738 3 VGNISSSDSQSGGADGGNMCLEL---------ALEGERLCKAGDCRAGVAFFQAAIQAGTD-DLRTLSAIYSQLGNAYFY 72 (609)
Q Consensus 3 l~~Lg~~~~~~g~~~~a~~~~~l---------~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~a~~~~~lg~~~~~ 72 (609)
++.|...|.+.|+.++|...+.. -.....|.+.|++++|+.+|++..+.+-. + ...|..+..++..
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd----~~t~~~ll~a~~~ 337 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID----QFTFSIMIRIFSR 337 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHh
Confidence 34555666666666666555542 12245566666666666666666553211 1 2245556666666
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 73 LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHA 152 (609)
Q Consensus 73 ~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~ 152 (609)
.|++++|.+.+..+++. + ......++..+...|.+.|++++|...|++..+ ....+|+.+...|..
T Consensus 338 ~g~~~~a~~i~~~m~~~----g-~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---------~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 338 LALLEHAKQAHAGLIRT----G-FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---------KNLISWNALIAGYGN 403 (697)
T ss_pred ccchHHHHHHHHHHHHh----C-CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---------CCeeeHHHHHHHHHH
Confidence 66666666666655543 1 122334556666667777777777776665432 123456677777777
Q ss_pred cccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 153 KGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 153 ~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 232 (609)
.|+ .++|++.|++.... +-.+. ..++..+...+...|..++|..+|+...+...-
T Consensus 404 ~G~--------------------~~~A~~lf~~M~~~----g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~ 458 (697)
T PLN03081 404 HGR--------------------GTKAVEMFERMIAE----GVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458 (697)
T ss_pred cCC--------------------HHHHHHHHHHHHHh----CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 777 77777777765432 21221 334666666677777777777777765542111
Q ss_pred hCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 233 FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 233 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 312 (609)
..+ ...|..+..+|.+.|++++|.+.+++. ... ....+|..+...+...|+++.|...+++.+.+.+.
T Consensus 459 ~p~----~~~y~~li~~l~r~G~~~eA~~~~~~~-------~~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 459 KPR----AMHYACMIELLGREGLLDEAYAMIRRA-------PFK-PTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred CCC----ccchHhHHHHHHhcCCHHHHHHHHHHC-------CCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence 111 125666777777777777777766542 110 11345677777777788888887777766544332
Q ss_pred hcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy10738 313 LMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLE 348 (609)
Q Consensus 313 ~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 348 (609)
....|..++.+|...|++++|.+.+++..+
T Consensus 527 ------~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 527 ------KLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred ------CCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 233677788888888888888888776554
No 80
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.36 E-value=5.6e-11 Score=115.52 Aligned_cols=195 Identities=15% Similarity=0.055 Sum_probs=141.7
Q ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhh
Q psy10738 19 GNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLG 98 (609)
Q Consensus 19 a~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~ 98 (609)
....-.++..|..++..|++++|+..|++++...|.++. ...+++.+|.++...|++++|+..++++++..+. .+.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~ 105 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY-AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN---HPD 105 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---CCc
Confidence 344456777899999999999999999999999997753 3457899999999999999999999999987432 334
Q ss_pred HHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCch
Q psy10738 99 EAKSSGNLGNTLKVM--------GKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPE 170 (609)
Q Consensus 99 ~~~a~~~lg~~~~~~--------g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~ 170 (609)
...+++.+|.++... |++++|+..+++++...+... ....++..++..+..
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~a~~~~~~~~~~------------------ 164 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE---YAPDAKKRMDYLRNR------------------ 164 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh---hHHHHHHHHHHHHHH------------------
Confidence 456789999999876 889999999999988766321 111122211111100
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q psy10738 171 EVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSH 250 (609)
Q Consensus 171 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 250 (609)
.......+|.+|...|++.+|+..+++++...+.. .....++..+|.++
T Consensus 165 ----------------------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~a~~~l~~~~ 213 (235)
T TIGR03302 165 ----------------------------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDT---PATEEALARLVEAY 213 (235)
T ss_pred ----------------------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC---cchHHHHHHHHHHH
Confidence 01123467777888888888888888887765543 22344777888888
Q ss_pred HHhCCHHHHHHHHHHHHHH
Q psy10738 251 IFLGEYQAASEHYKRTLVL 269 (609)
Q Consensus 251 ~~~g~~~~A~~~~~~al~~ 269 (609)
...|++++|..+++.....
T Consensus 214 ~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 214 LKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHcCCHHHHHHHHHHHHhh
Confidence 8888888888888776543
No 81
>smart00390 GoLoco LGN motif, putative GEFs specific for G-alpha GTPases. GEF specific for Galpha_i proteins
Probab=99.36 E-value=2.9e-13 Score=77.17 Aligned_cols=24 Identities=42% Similarity=0.857 Sum_probs=15.9
Q ss_pred CchHHHHHHHhhhcchhhhcccCC
Q psy10738 536 DDGFLDMLIRCQGARLEDQRSHLP 559 (609)
Q Consensus 536 ~~~~~~~~~~~q~~r~~~qr~~~~ 559 (609)
+|+||+||.|+||+|||||||++.
T Consensus 1 ~e~ffelL~r~Qs~RmdDQR~~l~ 24 (26)
T smart00390 1 DEDLFDLLLRMQSSRMDDQRCELX 24 (26)
T ss_pred CcHHHHHHHHHHhhhHhhhccccc
Confidence 356777777777777777776643
No 82
>PF02188 GoLoco: GoLoco motif; InterPro: IPR003109 In heterotrimeric G-protein signalling, cell surface receptors (GPCRs) are coupled to membrane-associated heterotrimers comprising a GTP-hydrolysing subunit G-alpha and a G-beta/G-gamma dimer. The inactive form contains the alpha subunit bound to GDP and complexes with the beta and gamma subunit. When the ligand is associated to the receptor, GDP is displaced from G-alpha and GTP is bound. GTP/G-alpha complex dissociates from the trimer and associates to an effector until the intrinsic GTPase activity of G-alpha returns the protein to GDP bound form. Reassociation of GDP bound G-alpha with G-beta/G-gamma dimer terminates the signal. Several mechanisms regulate the signal output at different stage of the G-protein cascade. Two classes of intracellular proteins act as inhibitors of G protein activation: GTPase activating proteins (GAPs), which enhance GTP hydrolysis (see PDOC50132 from PROSITEDOC), and guanine dissociation inhibitors (GDIs), which inhibit GDP dissociation. The GoLoco or G-protein regulatory (GPR) motif found in various G-protein regulators [, ] acts as a GDI on G-alpha(i) [, ]. The crystal structure of the GoLoco motif in complex with G-alpha(i) has been solved []. It consists of three small alpha helices. The highly conserved Asp-Gln-Arg triad within the GoLoco motif participates directly in GDP binding by extending the arginine side chain into the nucleotide binding pocket, highly reminiscent of the catalytic arginine finger employed in GTPase-activating protein (see PDOC50238 from PROSITEDOC). This addition of an arginine in the binding pocket affects the interaction of GDP with G-alpha and therefore is certainly important for the GoLoco GDI activity []. Some proteins known to contain a GoLoco motif are listed below: Mammalian regulators of G-protein signalling 12 and 14 (RGS12 and RGS14), multifaceted signal transduction regulators. Loco, the drosophila RGS12 homologue. Mammalian Purkinje-cell protein-2 (Pcp2). It may function as a cell-type specific modulator for G protein-mediated cell signalling. It is uniquely expressed in cerebellar Purkinje cells and in retinal bipolar neurons. Eukaryotic Rap1GAP. A GTPase activator for the nuclear ras-related regulatory protein RAP-1A. Drosophila protein Rapsynoid (also known as Partner of Inscuteable, Pins) and its mammalian homologues AGS3 and LGN. They form a G-protein regulator family that also contains TPR repeats. ; GO: 0005096 GTPase activator activity, 0007165 signal transduction; PDB: 1KJY_D 3ONW_D 2XNS_D 3QI2_C 2OM2_D.
Probab=99.35 E-value=1.6e-13 Score=76.51 Aligned_cols=21 Identities=38% Similarity=0.832 Sum_probs=10.2
Q ss_pred chHHHHHHHhhhcchhhhccc
Q psy10738 537 DGFLDMLIRCQGARLEDQRSH 557 (609)
Q Consensus 537 ~~~~~~~~~~q~~r~~~qr~~ 557 (609)
|+||+||+++||+|||||||+
T Consensus 2 e~f~~li~~~Q~~RmddQR~~ 22 (23)
T PF02188_consen 2 EDFFDLIARVQSSRMDDQRCS 22 (23)
T ss_dssp HHHHHHHHCCCCCCGCSSSSS
T ss_pred hHHHHHHHHHHhcchhhhccC
Confidence 444444444444444444443
No 83
>PLN03077 Protein ECB2; Provisional
Probab=99.33 E-value=2.5e-10 Score=132.02 Aligned_cols=254 Identities=13% Similarity=0.012 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHH-
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEG- 140 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~- 140 (609)
++..+...|.+.|++++|.+.|++..+ .....|..+...|...|++++|+..|++.+.-. ..+.....
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~---------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~--~pd~~t~~~ 494 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPE---------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL--KPNSVTLIA 494 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCC---------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCC--CCCHhHHHH
Confidence 455566667777777777776665321 123456777777778888888888888765310 01111000
Q ss_pred ------------------------------HHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH
Q psy10738 141 ------------------------------RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 141 ------------------------------~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 190 (609)
..+..+-..|...|+ +++|...|+..
T Consensus 495 lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~--------------------~~~A~~~f~~~---- 550 (857)
T PLN03077 495 ALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR--------------------MNYAWNQFNSH---- 550 (857)
T ss_pred HHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC--------------------HHHHHHHHHhc----
Confidence 011223345555565 66666555442
Q ss_pred HHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy10738 191 KEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLA 270 (609)
Q Consensus 191 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 270 (609)
.....+|+.+...|...|+.++|+..|++..+.--. ++ ..++..+-..+...|.+++|..+|+......
T Consensus 551 ------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~-Pd----~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~ 619 (857)
T PLN03077 551 ------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN-PD----EVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619 (857)
T ss_pred ------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----cccHHHHHHHHhhcChHHHHHHHHHHHHHHh
Confidence 112346777888888888888888888876542111 11 1245555667778888888888887765332
Q ss_pred HHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 271 QDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 271 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
.-.. ....|..+..++.+.|++++|.+.+++.- + . ....+|..|-..+...|+.+.|....++.+++.
T Consensus 620 gi~P----~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~------~-pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~ 687 (857)
T PLN03077 620 SITP----NLKHYACVVDLLGRAGKLTEAYNFINKMP-I------T-PDPAVWGALLNACRIHRHVELGELAAQHIFELD 687 (857)
T ss_pred CCCC----chHHHHHHHHHHHhCCCHHHHHHHHHHCC-C------C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Confidence 1111 13567778888888888888888877531 1 1 113456666666777788888877777776653
Q ss_pred HHcCCCchHHHHHHHHHHHHHHcCCCCCC
Q psy10738 351 KQLGDPLGQVTAQMNVTDLRKALGMSTND 379 (609)
Q Consensus 351 ~~~~~~~~~~~a~~~la~l~~~~g~~~~a 379 (609)
+.....+..|+.+|...|+++++
T Consensus 688 ------p~~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 688 ------PNSVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred ------CCCcchHHHHHHHHHHCCChHHH
Confidence 45566788888899888886654
No 84
>KOG1156|consensus
Probab=99.33 E-value=1.4e-09 Score=112.33 Aligned_cols=285 Identities=14% Similarity=0.119 Sum_probs=174.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.+++.|..+...|+-++|..+...++..++..+- +|..+|.++....+|++|+++|+.|+.+ .+....++
T Consensus 43 slAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v----CwHv~gl~~R~dK~Y~eaiKcy~nAl~~------~~dN~qil 112 (700)
T KOG1156|consen 43 SLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV----CWHVLGLLQRSDKKYDEAIKCYRNALKI------EKDNLQIL 112 (700)
T ss_pred hHHhccchhhcccchHHHHHHHHHHhccCcccch----hHHHHHHHHhhhhhHHHHHHHHHHHHhc------CCCcHHHH
Confidence 3455577777777777777777777776665533 6777777777777777777777777777 66667777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
..++.....+|+++-....-.+.+++.+ ..-..|...+..++..|+ +..|....
T Consensus 113 rDlslLQ~QmRd~~~~~~tr~~LLql~~------~~ra~w~~~Avs~~L~g~--------------------y~~A~~il 166 (700)
T KOG1156|consen 113 RDLSLLQIQMRDYEGYLETRNQLLQLRP------SQRASWIGFAVAQHLLGE--------------------YKMALEIL 166 (700)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhh------hhHHHHHHHHHHHHHHHH--------------------HHHHHHHH
Confidence 7777777777777777776666666655 444456666777777776 44444443
Q ss_pred HHHHHHHH-----------------------------------HhC-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10738 184 EQNLALMK-----------------------------------EIN-DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERL 227 (609)
Q Consensus 184 ~~al~~~~-----------------------------------~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 227 (609)
+....... ... ............|.++..+|++++|...|...+
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 33332221 110 001112233445777888888888888888877
Q ss_pred HHHHHhCChHHH-HHHHH---HHH----HHHHHh-CC-------------------HHHHH-H-----------------
Q psy10738 228 KIAREFGDKAAE-RRANS---NLG----NSHIFL-GE-------------------YQAAS-E----------------- 261 (609)
Q Consensus 228 ~~~~~~~~~~~~-~~~~~---~la----~~~~~~-g~-------------------~~~A~-~----------------- 261 (609)
...+++-+-... ..++. ..+ .+|... .+ +.... .
T Consensus 247 ~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl 326 (700)
T KOG1156|consen 247 ERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDL 326 (700)
T ss_pred hhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhh
Confidence 766654332111 11110 000 011100 00 00000 0
Q ss_pred -----------HHHHHHHHHH-Hc--------------CCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc
Q psy10738 262 -----------HYKRTLVLAQ-DL--------------GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD 315 (609)
Q Consensus 262 -----------~~~~al~~~~-~~--------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 315 (609)
.+++.+.... .. ..+....+.++.++..+...|+++.|..+++.|+...+.
T Consensus 327 ~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT--- 403 (700)
T KOG1156|consen 327 RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT--- 403 (700)
T ss_pred HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch---
Confidence 1111111110 00 022345667788888999999999999999988865544
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 316 RVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 316 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
..+.+...|+++...|+.++|..++.++.++.
T Consensus 404 ---liEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 404 ---LIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred ---HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 66788889999999999999999998887764
No 85
>KOG0624|consensus
Probab=99.32 E-value=1.7e-10 Score=110.23 Aligned_cols=266 Identities=15% Similarity=0.067 Sum_probs=192.4
Q ss_pred hhhhhHhhhcCCCcchhHHHHHH------------HHHHHHHhcCChHHHHHHHHHHHHhCCcchhH-----------HH
Q psy10738 4 GNISSSDSQSGGADGGNMCLELA------------LEGERLCKAGDCRAGVAFFQAAIQAGTDDLRT-----------LS 60 (609)
Q Consensus 4 ~~Lg~~~~~~g~~~~a~~~~~l~------------~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------~a 60 (609)
+.-+.+|...|...-|+.-+..+ .+|.++.++|.+++|+.-|..+|+.+|.+... ..
T Consensus 76 frRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~ 155 (504)
T KOG0624|consen 76 FRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH 155 (504)
T ss_pred HHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH
Confidence 33455566666665555444333 34888899999999999999999887743210 11
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHH
Q psy10738 61 AIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEG 140 (609)
Q Consensus 61 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~ 140 (609)
..+......++..|++..|+++..+.+++ .+..+..+...+.+|...|+...|+.-+..+-++.. ...
T Consensus 156 ~~l~~ql~s~~~~GD~~~ai~~i~~llEi------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~------DnT 223 (504)
T KOG0624|consen 156 WVLVQQLKSASGSGDCQNAIEMITHLLEI------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ------DNT 223 (504)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhc------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc------cch
Confidence 22333444556678899999999998888 788888889999999999999999998888777765 456
Q ss_pred HHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH---------HHHHH
Q psy10738 141 RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNL---------GNTYY 211 (609)
Q Consensus 141 ~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l---------g~~~~ 211 (609)
..++.++.+++..|+ .+.++....+++++-+... .....|-.+ +.-..
T Consensus 224 e~~ykis~L~Y~vgd--------------------~~~sL~~iRECLKldpdHK---~Cf~~YKklkKv~K~les~e~~i 280 (504)
T KOG0624|consen 224 EGHYKISQLLYTVGD--------------------AENSLKEIRECLKLDPDHK---LCFPFYKKLKKVVKSLESAEQAI 280 (504)
T ss_pred HHHHHHHHHHHhhhh--------------------HHHHHHHHHHHHccCcchh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 688899999999999 8888888888877633221 111111111 23344
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Q psy10738 212 LLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYT 291 (609)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 291 (609)
..++|.++++..++.++..+.... ......-.+..|+..-|++.+|+..+.+++.+.+. .+.++...|.+|.
T Consensus 281 e~~~~t~cle~ge~vlk~ep~~~~--ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~------dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 281 EEKHWTECLEAGEKVLKNEPEETM--IRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD------DVQVLCDRAEAYL 352 (504)
T ss_pred hhhhHHHHHHHHHHHHhcCCcccc--eeeeeeheeeecccccCCHHHHHHHHHHHHhcCch------HHHHHHHHHHHHh
Confidence 567777777777777665444221 12234556778889999999999999999998876 3889999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHH
Q psy10738 292 LLRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 292 ~~g~~~~A~~~~~~al~~~~~ 312 (609)
....|+.|+.-|++|.+..+.
T Consensus 353 ~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 353 GDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred hhHHHHHHHHHHHHHHhcCcc
Confidence 999999999999999987554
No 86
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.30 E-value=1.2e-10 Score=113.21 Aligned_cols=194 Identities=14% Similarity=0.054 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcH
Q psy10738 58 TLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKL 137 (609)
Q Consensus 58 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~ 137 (609)
..+..++.+|..++..|++++|+..+++++...+ +.+....+++.+|.++...|++++|+..++++++..+...
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~--- 104 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYP---FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP--- 104 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC---
Confidence 3466899999999999999999999999887732 2344557899999999999999999999999998877433
Q ss_pred HHHHHHHHHHHHHHHc--------ccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q psy10738 138 SEGRALYNLGNVYHAK--------GKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNT 209 (609)
Q Consensus 138 ~~~~~~~~lg~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 209 (609)
....+++.+|.++... |+ +++|+..+++++...+. ......++..++..
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~~~~~~p~---~~~~~~a~~~~~~~ 161 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTA--------------------AREAFEAFQELIRRYPN---SEYAPDAKKRMDYL 161 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHH--------------------HHHHHHHHHHHHHHCCC---ChhHHHHHHHHHHH
Confidence 3345788999999876 55 89999999998876332 22222233333222
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q psy10738 210 YYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNT 289 (609)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 289 (609)
+.. .......+|.+|...|++.+|+..+++++...+....... +++.+|.+
T Consensus 162 ~~~--------------------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---a~~~l~~~ 212 (235)
T TIGR03302 162 RNR--------------------------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEE---ALARLVEA 212 (235)
T ss_pred HHH--------------------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHH---HHHHHHHH
Confidence 110 0113457889999999999999999999998765432222 56789999
Q ss_pred HHHhCCHHHHHHHHHHHHHH
Q psy10738 290 YTLLRDYPTAIDYHLRHLII 309 (609)
Q Consensus 290 ~~~~g~~~~A~~~~~~al~~ 309 (609)
+...|++++|..+++.....
T Consensus 213 ~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 213 YLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999987653
No 87
>KOG2300|consensus
Probab=99.30 E-value=3.8e-08 Score=98.48 Aligned_cols=236 Identities=16% Similarity=0.099 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCcHH--------HHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHH
Q psy10738 116 YDEAMVCCKRHLEISRQLNDKLS--------EGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNL 187 (609)
Q Consensus 116 ~~~A~~~~~~al~l~~~~~d~~~--------~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 187 (609)
+++|.++-++++....+...... ....+-++..+-.-.|+ +.+|++....+.
T Consensus 291 ~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~--------------------~~~al~~i~dm~ 350 (629)
T KOG2300|consen 291 FKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGD--------------------YVEALEEIVDMK 350 (629)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHH
Confidence 55555555555555444432221 12233445556666677 899998888888
Q ss_pred HHHHHhCCh----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q psy10738 188 ALMKEINDT----AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHY 263 (609)
Q Consensus 188 ~~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 263 (609)
+.+.....+ ...+.++..+|......|.|+.|...|..|.+.... ....+.+..++|.+|...|+-+.-.+.+
T Consensus 351 ~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~---~dl~a~~nlnlAi~YL~~~~~ed~y~~l 427 (629)
T KOG2300|consen 351 NWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES---IDLQAFCNLNLAISYLRIGDAEDLYKAL 427 (629)
T ss_pred HHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH---HHHHHHHHHhHHHHHHHhccHHHHHHHH
Confidence 887776542 334667888888888899999999999999876544 3345668889999999988755433322
Q ss_pred HHHHHHHHHcC----CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHH
Q psy10738 264 KRTLVLAQDLG----DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKA 339 (609)
Q Consensus 264 ~~al~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 339 (609)
+ .+.+... .....+.+++..|...+.++++.+|..++.+.++++...+.....+..+..|+.+....||..++
T Consensus 428 d---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es 504 (629)
T KOG2300|consen 428 D---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVES 504 (629)
T ss_pred H---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 2 2222211 22345778888899999999999999999999999866555666777888999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCC
Q psy10738 340 LYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMST 377 (609)
Q Consensus 340 ~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~ 377 (609)
.....-++++++++.|.+........+-+++.+.|+..
T Consensus 505 ~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~ 542 (629)
T KOG2300|consen 505 RNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKG 542 (629)
T ss_pred HhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcch
Confidence 99999999999999999999999999999999999843
No 88
>PF02188 GoLoco: GoLoco motif; InterPro: IPR003109 In heterotrimeric G-protein signalling, cell surface receptors (GPCRs) are coupled to membrane-associated heterotrimers comprising a GTP-hydrolysing subunit G-alpha and a G-beta/G-gamma dimer. The inactive form contains the alpha subunit bound to GDP and complexes with the beta and gamma subunit. When the ligand is associated to the receptor, GDP is displaced from G-alpha and GTP is bound. GTP/G-alpha complex dissociates from the trimer and associates to an effector until the intrinsic GTPase activity of G-alpha returns the protein to GDP bound form. Reassociation of GDP bound G-alpha with G-beta/G-gamma dimer terminates the signal. Several mechanisms regulate the signal output at different stage of the G-protein cascade. Two classes of intracellular proteins act as inhibitors of G protein activation: GTPase activating proteins (GAPs), which enhance GTP hydrolysis (see PDOC50132 from PROSITEDOC), and guanine dissociation inhibitors (GDIs), which inhibit GDP dissociation. The GoLoco or G-protein regulatory (GPR) motif found in various G-protein regulators [, ] acts as a GDI on G-alpha(i) [, ]. The crystal structure of the GoLoco motif in complex with G-alpha(i) has been solved []. It consists of three small alpha helices. The highly conserved Asp-Gln-Arg triad within the GoLoco motif participates directly in GDP binding by extending the arginine side chain into the nucleotide binding pocket, highly reminiscent of the catalytic arginine finger employed in GTPase-activating protein (see PDOC50238 from PROSITEDOC). This addition of an arginine in the binding pocket affects the interaction of GDP with G-alpha and therefore is certainly important for the GoLoco GDI activity []. Some proteins known to contain a GoLoco motif are listed below: Mammalian regulators of G-protein signalling 12 and 14 (RGS12 and RGS14), multifaceted signal transduction regulators. Loco, the drosophila RGS12 homologue. Mammalian Purkinje-cell protein-2 (Pcp2). It may function as a cell-type specific modulator for G protein-mediated cell signalling. It is uniquely expressed in cerebellar Purkinje cells and in retinal bipolar neurons. Eukaryotic Rap1GAP. A GTPase activator for the nuclear ras-related regulatory protein RAP-1A. Drosophila protein Rapsynoid (also known as Partner of Inscuteable, Pins) and its mammalian homologues AGS3 and LGN. They form a G-protein regulator family that also contains TPR repeats. ; GO: 0005096 GTPase activator activity, 0007165 signal transduction; PDB: 1KJY_D 3ONW_D 2XNS_D 3QI2_C 2OM2_D.
Probab=99.30 E-value=5.6e-13 Score=74.33 Aligned_cols=23 Identities=65% Similarity=1.093 Sum_probs=20.6
Q ss_pred chhHHHHHHHhhccccchhcccC
Q psy10738 567 DEDFFSLITRLQSGRMEDQRATV 589 (609)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~ 589 (609)
+|+||+||+|+|++||||||++|
T Consensus 1 ~e~f~~li~~~Q~~RmddQR~~l 23 (23)
T PF02188_consen 1 DEDFFDLIARVQSSRMDDQRCSL 23 (23)
T ss_dssp -HHHHHHHHCCCCCCGCSSSSS-
T ss_pred ChHHHHHHHHHHhcchhhhccCC
Confidence 68999999999999999999975
No 89
>PLN02789 farnesyltranstransferase
Probab=99.29 E-value=4.3e-10 Score=112.76 Aligned_cols=217 Identities=12% Similarity=0.018 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCCcHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG-KYDEAMVCCKRHLEISRQLNDKLSEG 140 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~~~~~d~~~~~ 140 (609)
++..+-.++...+.+++|+..+.+++.+ .|....++...|.++..+| ++++++.++.+++...+ ...
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np------kny 106 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP------KNY 106 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC------cch
Confidence 3434444455667889999999999999 8888999999999999999 68999999999998766 555
Q ss_pred HHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10738 141 RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAI 220 (609)
Q Consensus 141 ~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 220 (609)
.++++.+.++...|+. .+++++.++.+++++ .+....++.+.|.++...|++++|+
T Consensus 107 qaW~~R~~~l~~l~~~------------------~~~~el~~~~kal~~------dpkNy~AW~~R~w~l~~l~~~~eeL 162 (320)
T PLN02789 107 QIWHHRRWLAEKLGPD------------------AANKELEFTRKILSL------DAKNYHAWSHRQWVLRTLGGWEDEL 162 (320)
T ss_pred HHhHHHHHHHHHcCch------------------hhHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHhhhHHHHH
Confidence 6789999998888860 036788888888877 5566789999999999999999999
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh---CCH----HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-
Q psy10738 221 YYHQERLKIAREFGDKAAERRANSNLGNSHIFL---GEY----QAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL- 292 (609)
Q Consensus 221 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~- 292 (609)
+++.++++..+.... +|+..+.+.... |.+ ++++.+..+++.+.+.. ..++..++.++..
T Consensus 163 ~~~~~~I~~d~~N~s------AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N------~SaW~Yl~~ll~~~ 230 (320)
T PLN02789 163 EYCHQLLEEDVRNNS------AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRN------ESPWRYLRGLFKDD 230 (320)
T ss_pred HHHHHHHHHCCCchh------HHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCC------cCHHHHHHHHHhcC
Confidence 999999998776655 888888877665 333 57888888999988765 4577778888877
Q ss_pred ---hCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Q psy10738 293 ---LRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAA 332 (609)
Q Consensus 293 ---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~ 332 (609)
+++..+|+..+.+++... .....++..|+.+|..
T Consensus 231 ~~~l~~~~~~~~~~~~~~~~~------~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 231 KEALVSDPEVSSVCLEVLSKD------SNHVFALSDLLDLLCE 267 (320)
T ss_pred CcccccchhHHHHHHHhhccc------CCcHHHHHHHHHHHHh
Confidence 456677888888766532 2234577788888875
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.29 E-value=2.8e-09 Score=113.04 Aligned_cols=301 Identities=11% Similarity=0.017 Sum_probs=185.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q psy10738 27 LEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNL 106 (609)
Q Consensus 27 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~l 106 (609)
.++.++...|++++|++++++....-.+. ..++-..|.++..+|++++|...|...+.. .|.....+..+
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk----~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r------NPdn~~Yy~~L 78 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQILDK----LAVLEKRAELLLKLGRKEEAEKIYRELIDR------NPDNYDYYRGL 78 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhhCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CCCcHHHHHHH
Confidence 34677778888888888887765554443 346677788888888888888888888777 66666666666
Q ss_pred HHHHHHcC-----CHHHHHHHHHHHHHHHHHcCCcHH------HHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHh
Q psy10738 107 GNTLKVMG-----KYDEAMVCCKRHLEISRQLNDKLS------EGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVC 175 (609)
Q Consensus 107 g~~~~~~g-----~~~~A~~~~~~al~l~~~~~d~~~------~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 175 (609)
..+..... ..+.-...|.+.....+...-+.. ........+..|...+-. .-...+....+..
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~------KgvPslF~~lk~L 152 (517)
T PF12569_consen 79 EEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLR------KGVPSLFSNLKPL 152 (517)
T ss_pred HHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHh------cCCchHHHHHHHH
Confidence 66653332 344455555554443332111100 011112222222221110 0001111111111
Q ss_pred HH---HHHHHHHHHHHHHHHh--------------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHH
Q psy10738 176 LQ---EAIKYYEQNLALMKEI--------------NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAA 238 (609)
Q Consensus 176 ~~---~A~~~~~~al~~~~~~--------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (609)
|. ++.-...-+..+.... ..+....++++.++..|...|++++|+++++++++..+...+
T Consensus 153 y~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~e--- 229 (517)
T PF12569_consen 153 YKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVE--- 229 (517)
T ss_pred HcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH---
Confidence 11 1111111111111111 123445789999999999999999999999999998666544
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-Hhcchh
Q psy10738 239 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ-QLMDRV 317 (609)
Q Consensus 239 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~ 317 (609)
.|...|.++-..|++.+|..+++.|-.+...- -.+....+..+++.|+.++|.+.+.....-.. ...+-.
T Consensus 230 ---ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D------RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~ 300 (517)
T PF12569_consen 230 ---LYMTKARILKHAGDLKEAAEAMDEARELDLAD------RYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLN 300 (517)
T ss_pred ---HHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh------HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHH
Confidence 99999999999999999999999988776542 33455667888899999999987765432211 111111
Q ss_pred h--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCC
Q psy10738 318 G--EGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGD 355 (609)
Q Consensus 318 ~--~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~ 355 (609)
. ........|.+|.+.|++..|+..|.....++..+.+
T Consensus 301 ~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 301 DMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE 340 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 1 1223345699999999999999999998888877643
No 91
>KOG0495|consensus
Probab=99.24 E-value=2.5e-09 Score=110.34 Aligned_cols=293 Identities=11% Similarity=-0.051 Sum_probs=190.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
+..+.+.+.++-|+..|..+|+..|.+.. +|...+..-..-|..++-..++++++.. .+..-..|...+.
T Consensus 523 a~~~~k~~~~~carAVya~alqvfp~k~s----lWlra~~~ek~hgt~Esl~Allqkav~~------~pkae~lwlM~ak 592 (913)
T KOG0495|consen 523 AQSCEKRPAIECARAVYAHALQVFPCKKS----LWLRAAMFEKSHGTRESLEALLQKAVEQ------CPKAEILWLMYAK 592 (913)
T ss_pred HHHHHhcchHHHHHHHHHHHHhhccchhH----HHHHHHHHHHhcCcHHHHHHHHHHHHHh------CCcchhHHHHHHH
Confidence 55666666666666666666666665432 3444444444445555555555555554 2222233333444
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCC---------------------------cHHHHHHHHHHHHHHHHcccccccCC
Q psy10738 109 TLKVMGKYDEAMVCCKRHLEISRQLND---------------------------KLSEGRALYNLGNVYHAKGKAIGKVG 161 (609)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~l~~~~~d---------------------------~~~~~~~~~~lg~~~~~~g~~~~~~~ 161 (609)
.++..|+...|...+.++++..+...+ .....++++.-+.+...+++
T Consensus 593 e~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~------ 666 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDN------ 666 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh------
Confidence 444445555555554444443321100 01233455555666666666
Q ss_pred CCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHH
Q psy10738 162 QQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERR 241 (609)
Q Consensus 162 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 241 (609)
.++|+.+++++++.+ +.....|..+|.++..+++.+.|...|...++.++....
T Consensus 667 --------------~eeA~rllEe~lk~f------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip------ 720 (913)
T KOG0495|consen 667 --------------VEEALRLLEEALKSF------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP------ 720 (913)
T ss_pred --------------HHHHHHHHHHHHHhC------CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch------
Confidence 788888888887763 445567888888888888888888888888887776655
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchh----
Q psy10738 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRV---- 317 (609)
Q Consensus 242 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---- 317 (609)
.|..++.+-...|+...|...++++.--.++. ...|...-..-...|+.+.|.....+|++-++..+--+
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkNPk~------~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI 794 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKNPKN------ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAI 794 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc------chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHH
Confidence 77778888888888888888888876555442 44566666777889999999999999988776654311
Q ss_pred --------------------hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCC
Q psy10738 318 --------------------GEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGM 375 (609)
Q Consensus 318 --------------------~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~ 375 (609)
....++..+|..+....++++|..+|.+|+.+....| .++..+-..+...|.
T Consensus 795 ~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G------D~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 795 WLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG------DAWAWFYKFELRHGT 866 (913)
T ss_pred HhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc------hHHHHHHHHHHHhCC
Confidence 1224667889999999999999999999999875554 444455555556664
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.24 E-value=1.8e-08 Score=107.00 Aligned_cols=322 Identities=16% Similarity=0.065 Sum_probs=211.7
Q ss_pred hhHhhhcCCCcchhHHHHHH------------HHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHh-
Q psy10738 7 SSSDSQSGGADGGNMCLELA------------LEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYL- 73 (609)
Q Consensus 7 g~~~~~~g~~~~a~~~~~l~------------~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~- 73 (609)
..++...|++++|+..+.-. .+|..+.+.|++++|...|...|+.+|++.. .|..+..+....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~----Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYD----YYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH----HHHHHHHHHhhhc
Confidence 56778889999888776532 3499999999999999999999999999865 334444443222
Q ss_pred ----CCHHHHHHHHHHHHHHHHHcC------------C--------------hhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10738 74 ----GDYQKAMQYHKQDLTLARNME------------D--------------KLGEAKSSGNLGNTLKVMGKYDEAMVCC 123 (609)
Q Consensus 74 ----g~~~~A~~~~~~al~~~~~~~------------d--------------~~~~~~a~~~lg~~~~~~g~~~~A~~~~ 123 (609)
.+.+.-...|.+.....+... + ..+.+....++-..|. +..++...-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~---d~~K~~~i~ 163 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYK---DPEKAAIIE 163 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHc---ChhHHHHHH
Confidence 234555555555433322110 0 0011112222222222 122221111
Q ss_pred HHHHHHHHHc--------------CCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 124 KRHLEISRQL--------------NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 124 ~~al~l~~~~--------------~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
.-+..+.... ..+....++++.+|..|...|+ +++|+.+.+++++.
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~--------------------~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGD--------------------YEKALEYIDKAIEH 223 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHhc
Confidence 1111222111 1233456788999999999999 99999999999987
Q ss_pred HHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 190 MKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 269 (609)
Q Consensus 190 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 269 (609)
.|.....|...|.++-..|++.+|..+++.|..+...... +....+..+++.|+.++|...+..-..-
T Consensus 224 ------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy------iNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 224 ------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY------INSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred ------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH------HHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 6777889999999999999999999999999887554333 5566788889999999998877543322
Q ss_pred HH-HcCCcH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy10738 270 AQ-DLGDRA--VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKH 346 (609)
Q Consensus 270 ~~-~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~a 346 (609)
.. ...+.. ...+.....|.+|...|++..|++.|....+++....+.......|. .+.| -+..|-..
T Consensus 292 ~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc------~RK~----t~r~Y~~~ 361 (517)
T PF12569_consen 292 DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYC------LRKM----TLRAYVDM 361 (517)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHH------Hhhc----cHHHHHHH
Confidence 11 001111 12344456799999999999999999999999888755322222221 1112 13345556
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHcCCCC
Q psy10738 347 LEISKQLGDPLGQVTAQMNVTDLRKALGMST 377 (609)
Q Consensus 347 l~l~~~~~~~~~~~~a~~~la~l~~~~g~~~ 377 (609)
+.....+...+...++.....++|..+-+..
T Consensus 362 L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~ 392 (517)
T PF12569_consen 362 LRWEDKLRSHPFYRRAAKGAIRIYLELHDKP 392 (517)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHhcCc
Confidence 7777777788888888888888888876643
No 93
>smart00390 GoLoco LGN motif, putative GEFs specific for G-alpha GTPases. GEF specific for Galpha_i proteins
Probab=99.23 E-value=3.3e-12 Score=72.88 Aligned_cols=24 Identities=54% Similarity=0.942 Sum_probs=22.2
Q ss_pred chhHHHHHHHhhccccchhcccCC
Q psy10738 567 DEDFFSLITRLQSGRMEDQRATVP 590 (609)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~ 590 (609)
+|+||+||.|+|++|||||||.+.
T Consensus 1 ~e~ffelL~r~Qs~RmdDQR~~l~ 24 (26)
T smart00390 1 DEDLFDLLLRMQSSRMDDQRCELX 24 (26)
T ss_pred CcHHHHHHHHHHhhhHhhhccccc
Confidence 489999999999999999999864
No 94
>KOG1127|consensus
Probab=99.19 E-value=1.2e-09 Score=117.31 Aligned_cols=194 Identities=12% Similarity=0.106 Sum_probs=136.0
Q ss_pred hhhhhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHH
Q psy10738 3 VGNISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAY 70 (609)
Q Consensus 3 l~~Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~ 70 (609)
+..||.+|...-|...|..||..+.. +..+....+++.|....-.+-+..|... ....|..+|..|
T Consensus 495 f~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~--~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 495 FAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFA--CKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHH--HHhhhhhccccc
Confidence 34556666666566666666655443 4556666666666666444433333211 223455578888
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q psy10738 71 FYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVY 150 (609)
Q Consensus 71 ~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~ 150 (609)
...+++..|+..++.++.. .|....+|..+|.+|...|.|..|++.|.++..+.| ....+.+..+.+.
T Consensus 573 Lea~n~h~aV~~fQsALR~------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP------~s~y~~fk~A~~e 640 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRT------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP------LSKYGRFKEAVME 640 (1238)
T ss_pred cCccchhhHHHHHHHHhcC------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc------HhHHHHHHHHHHH
Confidence 8888888888888888888 788888999999999999999999999999888776 5556777888888
Q ss_pred HHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 151 HAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI-NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKI 229 (609)
Q Consensus 151 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 229 (609)
...|+ |.+|+..+...+...... .-....+.++..++..+...|-+.+|..+++++++.
T Consensus 641 cd~Gk--------------------Ykeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 641 CDNGK--------------------YKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred HHhhh--------------------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 88898 889988888776654322 222345667777777777777777787777777665
Q ss_pred H
Q psy10738 230 A 230 (609)
Q Consensus 230 ~ 230 (609)
+
T Consensus 701 f 701 (1238)
T KOG1127|consen 701 F 701 (1238)
T ss_pred H
Confidence 4
No 95
>PLN03077 Protein ECB2; Provisional
Probab=99.18 E-value=4e-09 Score=122.08 Aligned_cols=257 Identities=12% Similarity=0.016 Sum_probs=182.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhH----------
Q psy10738 30 ERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGE---------- 99 (609)
Q Consensus 30 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~---------- 99 (609)
..|.+.|++++|.++|++..+. + ...|..+...|...|++++|+..|++.+.. -..+....
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~~---d----~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~--~~pd~~t~~~lL~a~~~~ 502 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPEK---D----VISWTSIIAGLRLNNRCFEALIFFRQMLLT--LKPNSVTLIAALSACARI 502 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCCC---C----eeeHHHHHHHHHHCCCHHHHHHHHHHHHhC--CCCCHhHHHHHHHHHhhh
Confidence 4566777777777777765331 2 225777888888999999999999988642 00111100
Q ss_pred ---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccc
Q psy10738 100 ---------------------AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIG 158 (609)
Q Consensus 100 ---------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~ 158 (609)
...+..+-..|.+.|++++|...|+.. . ....+|+.+...|...|+
T Consensus 503 g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~------~d~~s~n~lI~~~~~~G~--- 569 (857)
T PLN03077 503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----E------KDVVSWNILLTGYVAHGK--- 569 (857)
T ss_pred chHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----C------CChhhHHHHHHHHHHcCC---
Confidence 111223446777888888888877664 1 234578899999999999
Q ss_pred cCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHH
Q psy10738 159 KVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAA 238 (609)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (609)
.++|+..|++..+. +-.+. ..++..+-..+...|.+++|..+|+...+...-.++
T Consensus 570 -----------------~~~A~~lf~~M~~~----g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~--- 624 (857)
T PLN03077 570 -----------------GSMAVELFNRMVES----GVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN--- 624 (857)
T ss_pred -----------------HHHHHHHHHHHHHc----CCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc---
Confidence 99999999986643 22222 235666667788999999999999987643322222
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhh
Q psy10738 239 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVG 318 (609)
Q Consensus 239 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 318 (609)
...|..+..++.+.|++++|.+.+++.- +. . ...+|..|-..+...|+.+.|....++.+++.+.
T Consensus 625 -~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~---p----d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~------ 689 (857)
T PLN03077 625 -LKHYACVVDLLGRAGKLTEAYNFINKMP-IT---P----DPAVWGALLNACRIHRHVELGELAAQHIFELDPN------ 689 (857)
T ss_pred -hHHHHHHHHHHHhCCCHHHHHHHHHHCC-CC---C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------
Confidence 2478889999999999999999987641 11 1 1456666767788899999998888888876544
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy10738 319 EGRACWSLGNAHAARGNHEKALYFATKHLE 348 (609)
Q Consensus 319 ~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 348 (609)
....|..++++|...|++++|....+...+
T Consensus 690 ~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 690 SVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred CcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 344788999999999999999988766544
No 96
>KOG2376|consensus
Probab=99.17 E-value=3.1e-07 Score=94.43 Aligned_cols=338 Identities=14% Similarity=0.072 Sum_probs=206.0
Q ss_pred hhhHhhhcCCCcchhHHHH---------HHHHHHHHHhcCChHHHHHHHHHHHHhCCcc---------------------
Q psy10738 6 ISSSDSQSGGADGGNMCLE---------LALEGERLCKAGDCRAGVAFFQAAIQAGTDD--------------------- 55 (609)
Q Consensus 6 Lg~~~~~~g~~~~a~~~~~---------l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--------------------- 55 (609)
=+.|.++.+..++++.++. +.++|..+|+.|+|++|+..|+..++.+.++
T Consensus 85 KAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~ 164 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLL 164 (652)
T ss_pred HHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHH
Confidence 3678889999999999886 5667999999999999999999986643221
Q ss_pred ------hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc---CC------hhhHHHHHHHHHHHHHHcCCHHHHH
Q psy10738 56 ------LRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM---ED------KLGEAKSSGNLGNTLKVMGKYDEAM 120 (609)
Q Consensus 56 ------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~d------~~~~~~a~~~lg~~~~~~g~~~~A~ 120 (609)
++.--..+++.+.++...|+|.+|++.+++++.++++. +| ......+...++.++..+|+-.+|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 11123567889999999999999999999998887743 11 1234567788999999999999999
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCch-HhHHhHHHH-HHHHHHHHHHHHHhCChHH
Q psy10738 121 VCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPE-EVKVCLQEA-IKYYEQNLALMKEINDTAA 198 (609)
Q Consensus 121 ~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~A-~~~~~~al~~~~~~~~~~~ 198 (609)
..|...+...+ .|....+.+-+||-.+-....- ++ .....++.- ....+.++..+. ...
T Consensus 245 ~iy~~~i~~~~--~D~~~~Av~~NNLva~~~d~~~-------------~d~~~l~~k~~~~~~l~~~~l~~Ls----~~q 305 (652)
T KOG2376|consen 245 SIYVDIIKRNP--ADEPSLAVAVNNLVALSKDQNY-------------FDGDLLKSKKSQVFKLAEFLLSKLS----KKQ 305 (652)
T ss_pred HHHHHHHHhcC--CCchHHHHHhcchhhhcccccc-------------CchHHHHHHHHHHHHhHHHHHHHHH----HHH
Confidence 99998776433 4544555555555433222111 00 000000000 000000000000 011
Q ss_pred HHHHHHHHHHHHHHcC----------------------------------CHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Q psy10738 199 QGRACGNLGNTYYLLG----------------------------------NFKQAIYYHQERLKIAREFGDKAAERRANS 244 (609)
Q Consensus 199 ~~~~~~~lg~~~~~~g----------------------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 244 (609)
...++.|.+.+.+..+ .+.+|++++...-+ +.+.....+..
T Consensus 306 k~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~-----~~p~~s~~v~L 380 (652)
T KOG2376|consen 306 KQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD-----GHPEKSKVVLL 380 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc-----cCCchhHHHHH
Confidence 1112223332222222 23333333322211 12222334677
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc-hhhHHHH
Q psy10738 245 NLGNSHIFLGEYQAASEHYKRTLVLAQDL-GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD-RVGEGRA 322 (609)
Q Consensus 245 ~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 322 (609)
.++.+.+..|+++.|++.+...+...... .+......+-..+-..|...++.+.|...+.+|+........ .......
T Consensus 381 ~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~ 460 (652)
T KOG2376|consen 381 LRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSL 460 (652)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhH
Confidence 78899999999999999998554222111 111111222333445677778888888888888887765433 2334556
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q psy10738 323 CWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKAL 373 (609)
Q Consensus 323 ~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~ 373 (609)
++.++.+....|+-++|...+++.++.. +....++..+.-.|..+
T Consensus 461 ~~~aa~f~lr~G~~~ea~s~leel~k~n------~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 461 MREAAEFKLRHGNEEEASSLLEELVKFN------PNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHHhHHHHhcCchHHHHHHHHHHHHhC------CchHHHHHHHHHHHHhc
Confidence 7778888889999999999999988765 44445555555444433
No 97
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.17 E-value=3e-10 Score=100.77 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=91.0
Q ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHH
Q psy10738 42 VAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121 (609)
Q Consensus 42 ~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~ 121 (609)
..+|+++++++|++ +..+|.++...|++++|+.+|++++.+ .+....++..+|.++...|++++|+.
T Consensus 13 ~~~~~~al~~~p~~-------~~~~g~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~g~~~~A~~ 79 (144)
T PRK15359 13 EDILKQLLSVDPET-------VYASGYASWQEGDYSRAVIDFSWLVMA------QPWSWRAHIALAGTWMMLKEYTTAIN 79 (144)
T ss_pred HHHHHHHHHcCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 45677777777763 345677788888888888888888777 67777788888888888888888888
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHH
Q psy10738 122 CCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201 (609)
Q Consensus 122 ~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 201 (609)
+|.+++.+.+ ..+.+++++|.++...|+ +++|+..|.+++.+ .+....
T Consensus 80 ~y~~Al~l~p------~~~~a~~~lg~~l~~~g~--------------------~~eAi~~~~~Al~~------~p~~~~ 127 (144)
T PRK15359 80 FYGHALMLDA------SHPEPVYQTGVCLKMMGE--------------------PGLAREAFQTAIKM------SYADAS 127 (144)
T ss_pred HHHHHHhcCC------CCcHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHh------CCCChH
Confidence 8888887665 456677888888888888 88888888887776 233344
Q ss_pred HHHHHHHHHH
Q psy10738 202 ACGNLGNTYY 211 (609)
Q Consensus 202 ~~~~lg~~~~ 211 (609)
.+.++|.+..
T Consensus 128 ~~~~~~~~~~ 137 (144)
T PRK15359 128 WSEIRQNAQI 137 (144)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 98
>KOG1156|consensus
Probab=99.17 E-value=2.5e-08 Score=103.36 Aligned_cols=242 Identities=18% Similarity=0.123 Sum_probs=194.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.++.++.-.+..++|..++...+.+++..|++.+ .+...|..+..+|+-++|..+...++.. +.....+|
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge----slAmkGL~L~~lg~~~ea~~~vr~glr~------d~~S~vCw 78 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGE----SLAMKGLTLNCLGKKEEAYELVRLGLRN------DLKSHVCW 78 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch----hHHhccchhhcccchHHHHHHHHHHhcc------CcccchhH
Confidence 4566778889999999999999999999888865 6677899999999999999999999886 67778899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
..+|.++....+|++|++||..|+.+.+ ....++..++.+...+++ |+.....-
T Consensus 79 Hv~gl~~R~dK~Y~eaiKcy~nAl~~~~------dN~qilrDlslLQ~QmRd--------------------~~~~~~tr 132 (700)
T KOG1156|consen 79 HVLGLLQRSDKKYDEAIKCYRNALKIEK------DNLQILRDLSLLQIQMRD--------------------YEGYLETR 132 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHHHh--------------------hhhHHHHH
Confidence 9999999999999999999999999877 667799999999999999 88777766
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHhCCHHHHHH
Q psy10738 184 EQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKA--AERRANSNLGNSHIFLGEYQAASE 261 (609)
Q Consensus 184 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~ 261 (609)
.+.+++ .+..-..|...+..+...|++..|....+..........+.. ....+......++...|.+++|.+
T Consensus 133 ~~LLql------~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 133 NQLLQL------RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHh------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 666665 556667888999999999999999999888777665333322 224455566777888888888877
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q psy10738 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 313 (609)
Q Consensus 262 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 313 (609)
.+..--.-.-+ ........|.++..++++++|...|...+...++.
T Consensus 207 ~L~~~e~~i~D------kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn 252 (700)
T KOG1156|consen 207 HLLDNEKQIVD------KLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDN 252 (700)
T ss_pred HHHhhhhHHHH------HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchh
Confidence 76543322211 23345567899999999999999999988776653
No 99
>KOG3785|consensus
Probab=99.14 E-value=1.5e-08 Score=97.50 Aligned_cols=299 Identities=16% Similarity=0.099 Sum_probs=178.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHH----------HHHHHHcCChhh
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQD----------LTLARNMEDKLG 98 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a----------l~~~~~~~d~~~ 98 (609)
|.+++..|+|++|...|.-+.+.+..+ +.++.+|+.+++.+|.|.+|.....++ ..++.+.+|...
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~~~~----~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKDDAP----AELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccCCCC----cccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHH
Confidence 889999999999999999988744333 457889999999999999998876554 233445555444
Q ss_pred HHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCC
Q psy10738 99 EAKSS----------GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEY 168 (609)
Q Consensus 99 ~~~a~----------~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~ 168 (609)
....+ ..++.+++..-.|.+|++.|.+.+.-.+ .....-.++|.+|+.+.-
T Consensus 140 ~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~------ey~alNVy~ALCyyKlDY------------- 200 (557)
T KOG3785|consen 140 ILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNP------EYIALNVYMALCYYKLDY------------- 200 (557)
T ss_pred HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh------hhhhhHHHHHHHHHhcch-------------
Confidence 43333 3456666777788888888888776544 444455667777777765
Q ss_pred chHhHHhHHHHHHHHHHHHHHHHHhCChH---------------------------------------------------
Q psy10738 169 PEEVKVCLQEAIKYYEQNLALMKEINDTA--------------------------------------------------- 197 (609)
Q Consensus 169 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~--------------------------------------------------- 197 (609)
|+-+.+.+.--+. +.++.+
T Consensus 201 -------ydvsqevl~vYL~---q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrng 270 (557)
T KOG3785|consen 201 -------YDVSQEVLKVYLR---QFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNG 270 (557)
T ss_pred -------hhhHHHHHHHHHH---hCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCC
Confidence 4444443332222 111111
Q ss_pred ------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 198 ------------AQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR 265 (609)
Q Consensus 198 ------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 265 (609)
....+..||...|..+++..+|+...+.. ... ...-|...|.++...|+--...++++-
T Consensus 271 EgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl-------~Pt--tP~EyilKgvv~aalGQe~gSreHlKi 341 (557)
T KOG3785|consen 271 EGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL-------DPT--TPYEYILKGVVFAALGQETGSREHLKI 341 (557)
T ss_pred ccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc-------CCC--ChHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 11223344444444444444444333221 000 011233344444444444444444444
Q ss_pred HHHHHHHcCCcHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHH
Q psy10738 266 TLVLAQDLGDRAVE---AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYF 342 (609)
Q Consensus 266 al~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~ 342 (609)
|-+...-.+..... ......+|.+++...++++.+.|+...-..+-... ...+++|+++...|++.+|.+.
T Consensus 342 AqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD------~Fn~N~AQAk~atgny~eaEel 415 (557)
T KOG3785|consen 342 AQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDD------DFNLNLAQAKLATGNYVEAEEL 415 (557)
T ss_pred HHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc------hhhhHHHHHHHHhcChHHHHHH
Confidence 44433333221111 11234566677777788888887776555544322 2678899999999999999887
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCC
Q psy10738 343 ATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDL 380 (609)
Q Consensus 343 ~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al 380 (609)
|-+.-. .+......-...||++|...+.+..|.
T Consensus 416 f~~is~-----~~ikn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 416 FIRISG-----PEIKNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HhhhcC-----hhhhhhHHHHHHHHHHHHhcCCchHHH
Confidence 755321 111344556778999999999988764
No 100
>KOG1127|consensus
Probab=99.14 E-value=8.8e-09 Score=110.94 Aligned_cols=233 Identities=16% Similarity=0.100 Sum_probs=191.9
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 73 LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHA 152 (609)
Q Consensus 73 ~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~ 152 (609)
..+...|+..+-+++.+ .+..+.++..||.+|...-+...|..+|.+|.++.. ..+.+.-.++..|..
T Consensus 471 rK~~~~al~ali~alrl------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa------tdaeaaaa~adtyae 538 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRL------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA------TDAEAAAASADTYAE 538 (1238)
T ss_pred hhhHHHHHHHHHHHHhc------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------hhhhhHHHHHHHhhc
Confidence 34577888888888888 888999999999999999999999999999999877 667788888999999
Q ss_pred cccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 153 KGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 153 ~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 232 (609)
..+ ++.|....-.+-+... .......+..+|..|...+++..|+..++.++...+.
T Consensus 539 ~~~--------------------we~a~~I~l~~~qka~----a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk 594 (1238)
T KOG1127|consen 539 EST--------------------WEEAFEICLRAAQKAP----AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK 594 (1238)
T ss_pred ccc--------------------HHHHHHHHHHHhhhch----HHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch
Confidence 988 8888877433322211 1222345566999999999999999999999998887
Q ss_pred hCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 233 FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 233 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 312 (609)
..+ +|..+|.+|...|.|..|++.|.++..+.+.. ....+..+.+....|+|.+|+..+...+.....
T Consensus 595 D~n------~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s------~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~ 662 (1238)
T KOG1127|consen 595 DYN------LWLGLGEAYPESGRYSHALKVFTKASLLRPLS------KYGRFKEAVMECDNGKYKEALDALGLIIYAFSL 662 (1238)
T ss_pred hHH------HHHHHHHHHHhcCceehHHHhhhhhHhcCcHh------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 665 99999999999999999999999999887763 556777888999999999999999988776544
Q ss_pred h-cchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHc
Q psy10738 313 L-MDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQL 353 (609)
Q Consensus 313 ~-~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~ 353 (609)
. ....+.+.++...+..+...|=..+|..+++++++.+.-.
T Consensus 663 e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 663 ERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 2 3355677888888999999999999999999999887543
No 101
>KOG1128|consensus
Probab=99.09 E-value=5.4e-09 Score=109.56 Aligned_cols=312 Identities=17% Similarity=0.106 Sum_probs=209.6
Q ss_pred hhhhHhhhcCCCcchhHHHHHHHH----HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHH
Q psy10738 5 NISSSDSQSGGADGGNMCLELALE----GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAM 80 (609)
Q Consensus 5 ~Lg~~~~~~g~~~~a~~~~~l~~~----g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 80 (609)
.++..+...|-...|...++.... ..+|...|+..+|..+..+-++ .+.+ +..|..+|.+... -
T Consensus 403 ~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d----~~lyc~LGDv~~d-------~ 470 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPD----PRLYCLLGDVLHD-------P 470 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCc----chhHHHhhhhccC-------h
Confidence 356666777777777666654333 5678888888899888888888 3434 2355555555444 4
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccC
Q psy10738 81 QYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKV 160 (609)
Q Consensus 81 ~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~ 160 (609)
.+|+++.++.+. ..+.+...+|......++|.++.++++..+++.+ .....|+.+|.+....++
T Consensus 471 s~yEkawElsn~-----~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np------lq~~~wf~~G~~ALqlek----- 534 (777)
T KOG1128|consen 471 SLYEKAWELSNY-----ISARAQRSLALLILSNKDFSEADKHLERSLEINP------LQLGTWFGLGCAALQLEK----- 534 (777)
T ss_pred HHHHHHHHHhhh-----hhHHHHHhhccccccchhHHHHHHHHHHHhhcCc------cchhHHHhccHHHHHHhh-----
Confidence 566666666432 3455777888888889999999999999999987 778899999999999999
Q ss_pred CCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Q psy10738 161 GQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAER 240 (609)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 240 (609)
++.|..+|..++.+ .+..+.+|+|++..|...|+-.+|...+++|++...++..
T Consensus 535 ---------------~q~av~aF~rcvtL------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~----- 588 (777)
T KOG1128|consen 535 ---------------EQAAVKAFHRCVTL------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ----- 588 (777)
T ss_pred ---------------hHHHHHHHHHHhhc------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe-----
Confidence 99999999999988 6777889999999999999999999999999987644433
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-HHhCCHHHHHHHHHH--HHHHHHHhcchh
Q psy10738 241 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY-TLLRDYPTAIDYHLR--HLIIAQQLMDRV 317 (609)
Q Consensus 241 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~--al~~~~~~~~~~ 317 (609)
.+-|.-.+....|.+++|+..|.+.+.+.....+.......-....... -..++-..+.....+ .....+....
T Consensus 589 -iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~~~~d~s~de~~~~k~~~kelmg~~~~qv~~-- 665 (777)
T KOG1128|consen 589 -IWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLEGMTDESGDEATGLKGKLKELLGKVLSQVTN-- 665 (777)
T ss_pred -eeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhC--
Confidence 7778888889999999999999999988877654433222222222111 122344444444444 1111222222
Q ss_pred hHHHHHHHHHHHH-----HHcCChHHHHHHHHHHHHHHHHcCCCch-------HHHHHHHHHHHHHHcC
Q psy10738 318 GEGRACWSLGNAH-----AARGNHEKALYFATKHLEISKQLGDPLG-------QVTAQMNVTDLRKALG 374 (609)
Q Consensus 318 ~~~~~~~~La~~~-----~~~g~~~~A~~~~~~al~l~~~~~~~~~-------~~~a~~~la~l~~~~g 374 (609)
....+...|..+ .+.+..++|.....+.........-... ..++...++.++...+
T Consensus 666 -s~~~wrL~a~l~~~~~~ek~~~~eka~~~l~k~~~~~s~~~~w~~d~~~~~~~v~~a~~l~~v~~e~~ 733 (777)
T KOG1128|consen 666 -SPETWRLYALLYGNGSSEKLDENEKAYRALSKAYKCDTGSNVWEKDITLFKEVVQAALGLAHVAIECS 733 (777)
T ss_pred -chhhhHhHhhhccccchhcccccHHHHhhhhhCccccccccCCccchhHHHHHHHHHHHHHHHHHHHh
Confidence 222333333322 2345566777777777666544443332 2334444555544443
No 102
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.09 E-value=1.3e-09 Score=96.64 Aligned_cols=112 Identities=18% Similarity=0.153 Sum_probs=98.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
...|..+...|++++|+.+|++++..+|.+. .++..+|.++...|++++|+..|.+++.+ .+..+.++++
T Consensus 28 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~lg~~~~~~g~~~~A~~~y~~Al~l------~p~~~~a~~~ 97 (144)
T PRK15359 28 YASGYASWQEGDYSRAVIDFSWLVMAQPWSW----RAHIALAGTWMMLKEYTTAINFYGHALML------DASHPEPVYQ 97 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CCCCcHHHHH
Confidence 3458999999999999999999999999885 48899999999999999999999999998 8888999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAK 153 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~ 153 (609)
+|.++...|++++|+..|.+++.+.+ .....+.++|.+....
T Consensus 98 lg~~l~~~g~~~eAi~~~~~Al~~~p------~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 98 TGVCLKMMGEPGLAREAFQTAIKMSY------ADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHH
Confidence 99999999999999999999999877 4445566666655443
No 103
>KOG0553|consensus
Probab=99.09 E-value=1.1e-09 Score=104.02 Aligned_cols=116 Identities=27% Similarity=0.390 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.+-.+|..+++.++|.+|+..|.+||++.|.+. ..|.+.+.+|..+|+|+.|++.++.++.+ ++...++|
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA----VyycNRAAAy~~Lg~~~~AVkDce~Al~i------Dp~yskay 152 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA----VYYCNRAAAYSKLGEYEDAVKDCESALSI------DPHYSKAY 152 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc----hHHHHHHHHHHHhcchHHHHHHHHHHHhc------ChHHHHHH
Confidence 344569999999999999999999999999984 48899999999999999999999999999 99999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccc
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK 155 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~ 155 (609)
..||.+|..+|++.+|++.|++++++.+ .......+|..+-...++
T Consensus 153 ~RLG~A~~~~gk~~~A~~aykKaLeldP------~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 153 GRLGLAYLALGKYEEAIEAYKKALELDP------DNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHHHHccCcHHHHHHHHHhhhccCC------CcHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999988 333455566666555555
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.08 E-value=8.2e-09 Score=96.68 Aligned_cols=127 Identities=17% Similarity=0.201 Sum_probs=93.6
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-H
Q psy10738 73 LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVY-H 151 (609)
Q Consensus 73 ~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~-~ 151 (609)
.++.++++..+++++.. .+....+|..+|.+|...|++++|+..|++++.+.+ ....++..+|.++ .
T Consensus 52 ~~~~~~~i~~l~~~L~~------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P------~~~~~~~~lA~aL~~ 119 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG------ENAELYAALATVLYY 119 (198)
T ss_pred chhHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHH
Confidence 55667777777777777 677777888888888888888888888888887776 4566777778764 5
Q ss_pred HcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 152 AKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAR 231 (609)
Q Consensus 152 ~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 231 (609)
..|++ .+++|...++++++. .+....++.++|..+...|++++|+.+++++++..+
T Consensus 120 ~~g~~------------------~~~~A~~~l~~al~~------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 120 QAGQH------------------MTPQTREMIDKALAL------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred hcCCC------------------CcHHHHHHHHHHHHh------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 55550 037788888887776 444566788888888888888888888888887766
Q ss_pred HhCC
Q psy10738 232 EFGD 235 (609)
Q Consensus 232 ~~~~ 235 (609)
...+
T Consensus 176 ~~~~ 179 (198)
T PRK10370 176 PRVN 179 (198)
T ss_pred CCcc
Confidence 6444
No 105
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.07 E-value=1.1e-08 Score=113.23 Aligned_cols=242 Identities=12% Similarity=-0.007 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-----
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLN----- 134 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~----- 134 (609)
..++..|...|...+++++|+..++.+++. .|.....++.+|.++...+++.+|... .++.+.+...
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKE------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 558899999999999999999999999988 888999999999999999998888766 5655544322
Q ss_pred --------CcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy10738 135 --------DKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNL 206 (609)
Q Consensus 135 --------d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 206 (609)
+....-.+++.+|.||-.+|+ +++|...|++++++ .+..+.+++++
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~--------------------~~ka~~~yer~L~~------D~~n~~aLNn~ 156 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNE--------------------NKKLKGVWERLVKA------DRDNPEIVKKL 156 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHhc------CcccHHHHHHH
Confidence 222334688999999999999 99999999999988 46677899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q psy10738 207 GNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 286 (609)
Q Consensus 207 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 286 (609)
|..|... +.++|+.++.+|+...-...........|. ..+...-.+++.=..+.++.+... ........+.-+
T Consensus 157 AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~--k~~~~~~~d~d~f~~i~~ki~~~~----~~~~~~~~~~~l 229 (906)
T PRK14720 157 ATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWS--KLVHYNSDDFDFFLRIERKVLGHR----EFTRLVGLLEDL 229 (906)
T ss_pred HHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHH--HHHhcCcccchHHHHHHHHHHhhh----ccchhHHHHHHH
Confidence 9999999 999999999999886443332222211221 112222222222222222222111 112234556666
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy10738 287 GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISK 351 (609)
Q Consensus 287 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~ 351 (609)
=..|...++|++++.+++.++++.+. ...+...++.+|. +.|.. ...+++++.+..
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~~~------n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~ 285 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHDNK------NNKAREELIRFYK--EKYKD-HSLLEDYLKMSD 285 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcCCc------chhhHHHHHHHHH--HHccC-cchHHHHHHHhc
Confidence 68899999999999999999988765 2346778888888 45544 677777777764
No 106
>KOG1585|consensus
Probab=99.05 E-value=2.4e-07 Score=85.18 Aligned_cols=241 Identities=13% Similarity=0.096 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHH
Q psy10738 40 AGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEA 119 (609)
Q Consensus 40 ~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A 119 (609)
+|.+...+....-..|....+..|..-+.+|....+|++|..++.+|.+..+........+.++-..|.....+..+.++
T Consensus 11 ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEv 90 (308)
T KOG1585|consen 11 EADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEV 90 (308)
T ss_pred HHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34444444443333344555677888889999999999999999999998888777888899999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHH
Q psy10738 120 MVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQ 199 (609)
Q Consensus 120 ~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 199 (609)
..++++|..++.+.|.+...+.++-.-|.+..... .++|+.+|++++.++...+.....
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~---------------------Pd~AlqlYqralavve~~dr~~ma 149 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALEKAAKALENVK---------------------PDDALQLYQRALAVVEEDDRDQMA 149 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCC---------------------HHHHHHHHHHHHHHHhccchHHHH
Confidence 99999999999999988887777777776655443 899999999999999887766677
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 200 GRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVE 279 (609)
Q Consensus 200 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 279 (609)
...+...++++.....|.+|-..+.+-..+.............+.....+|+...+|..|...++...++-.-. ....
T Consensus 150 ~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~--~sed 227 (308)
T KOG1585|consen 150 FELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL--KSED 227 (308)
T ss_pred HHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc--ChHH
Confidence 78889999999999999999999988877777655544444566666677778889999999998866553322 1223
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHH
Q psy10738 280 AQACYSLGNTYTLLRDYPTAIDYHL 304 (609)
Q Consensus 280 ~~~~~~la~~~~~~g~~~~A~~~~~ 304 (609)
..++.+|-..| ..|+.+++...+.
T Consensus 228 ~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 228 SRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 55566665444 5677777655543
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.04 E-value=5.9e-09 Score=97.67 Aligned_cols=152 Identities=18% Similarity=0.179 Sum_probs=122.2
Q ss_pred hhHhhhcCCCcchhHHHHHHHH-HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 7 SSSDSQSGGADGGNMCLELALE-GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQ 85 (609)
Q Consensus 7 g~~~~~~g~~~~a~~~~~l~~~-g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 85 (609)
+..|...|+++........... -..+...++.++++..++++++.+|++.. .|..+|.+|...|++++|+..|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~~~P~~~~----~w~~Lg~~~~~~g~~~~A~~a~~~ 98 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLHQFASQQTPEAQLQALQDKIRANPQNSE----QWALLGEYYLWRNDYDNALLAYRQ 98 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccccccCchhHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3456667776554333211000 00111357789999999999999999855 899999999999999999999999
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCC
Q psy10738 86 DLTLARNMEDKLGEAKSSGNLGNTL-KVMGK--YDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQ 162 (609)
Q Consensus 86 al~~~~~~~d~~~~~~a~~~lg~~~-~~~g~--~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~ 162 (609)
++.+ .+....++..+|.++ ...|+ +++|...++++++..+ ....+++++|..+...|+
T Consensus 99 Al~l------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP------~~~~al~~LA~~~~~~g~------- 159 (198)
T PRK10370 99 ALQL------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA------NEVTALMLLASDAFMQAD------- 159 (198)
T ss_pred HHHh------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC------CChhHHHHHHHHHHHcCC-------
Confidence 9999 788899999999975 67787 5999999999999887 556799999999999999
Q ss_pred CCCCCCchHhHHhHHHHHHHHHHHHHHHHHhC
Q psy10738 163 QDPGEYPEEVKVCLQEAIKYYEQNLALMKEIN 194 (609)
Q Consensus 163 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 194 (609)
+++|+.++++++++.....
T Consensus 160 -------------~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 160 -------------YAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred -------------HHHHHHHHHHHHhhCCCCc
Confidence 9999999999998865533
No 108
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.04 E-value=2.4e-07 Score=91.29 Aligned_cols=273 Identities=16% Similarity=0.086 Sum_probs=186.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
....+|..-+..|+|.+|.....++-+..+.. ...|..-+.+...+|+++.|-.++.++-+.. ......+.
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p----~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-----~~~~l~v~ 156 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP----VLAYLLAAEAAQQRGDEDRANRYLAEAAELA-----GDDTLAVE 156 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch----HHHHHHHHHHHHhcccHHHHHHHHHHHhccC-----CCchHHHH
Confidence 44556888889999999999999976655432 3356666788889999999999998876652 12334567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
...+.+....|+++.|.....++++..+ ....++.....+|...|+ +.....+.
T Consensus 157 ltrarlll~~~d~~aA~~~v~~ll~~~p------r~~~vlrLa~r~y~~~g~--------------------~~~ll~~l 210 (400)
T COG3071 157 LTRARLLLNRRDYPAARENVDQLLEMTP------RHPEVLRLALRAYIRLGA--------------------WQALLAIL 210 (400)
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHhCc------CChHHHHHHHHHHHHhcc--------------------HHHHHHHH
Confidence 7888999999999999999999888876 555677777888888888 55544444
Q ss_pred HHHHH-------------------HHHHhCC---hH--------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10738 184 EQNLA-------------------LMKEIND---TA--------------AQGRACGNLGNTYYLLGNFKQAIYYHQERL 227 (609)
Q Consensus 184 ~~al~-------------------~~~~~~~---~~--------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 227 (609)
.+.-+ +..+..+ .. ....+...++.-+...|++++|.+..++++
T Consensus 211 ~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L 290 (400)
T COG3071 211 PKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDAL 290 (400)
T ss_pred HHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 33211 0011000 00 012234445566667777777777777766
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy10738 228 KIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 307 (609)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 307 (609)
+. ..+.. .+..++ ...-+++..=++..++.+...++. +..+..||..|.+.+.|.+|..+++.|+
T Consensus 291 k~---~~D~~----L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~------p~L~~tLG~L~~k~~~w~kA~~~leaAl 355 (400)
T COG3071 291 KR---QWDPR----LCRLIP--RLRPGDPEPLIKAAEKWLKQHPED------PLLLSTLGRLALKNKLWGKASEALEAAL 355 (400)
T ss_pred Hh---ccChh----HHHHHh--hcCCCCchHHHHHHHHHHHhCCCC------hhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 53 22211 111111 123455555555555555544332 4688899999999999999999999888
Q ss_pred HHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHc
Q psy10738 308 IIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQL 353 (609)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~ 353 (609)
...++ +..+..+|.++.++|+..+|...+++++.+..+.
T Consensus 356 ~~~~s-------~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 356 KLRPS-------ASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hcCCC-------hhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 76554 4568889999999999999999999999665443
No 109
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.03 E-value=1.4e-08 Score=111.81 Aligned_cols=168 Identities=11% Similarity=-0.005 Sum_probs=126.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHH
Q psy10738 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRA 142 (609)
Q Consensus 63 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~ 142 (609)
+.++-.+....+...++.+.+-+++.+.+. .+..+.++.+||.+....|.+++|...++.++++.+ ....+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P------d~~~a 122 (694)
T PRK15179 52 LQQARQVLERHAAVHKPAAALPELLDYVRR---YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP------DSSEA 122 (694)
T ss_pred HHHHHHHHHHhhhhcchHhhHHHHHHHHHh---ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC------CcHHH
Confidence 333344444555555555666666666554 445578888888888888888888888888888887 66778
Q ss_pred HHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy10738 143 LYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYY 222 (609)
Q Consensus 143 ~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 222 (609)
..+++.++...++ +++|+..+++++.. .+..+.+++.+|.++..+|++++|+.+
T Consensus 123 ~~~~a~~L~~~~~--------------------~eeA~~~~~~~l~~------~p~~~~~~~~~a~~l~~~g~~~~A~~~ 176 (694)
T PRK15179 123 FILMLRGVKRQQG--------------------IEAGRAEIELYFSG------GSSSAREILLEAKSWDEIGQSEQADAC 176 (694)
T ss_pred HHHHHHHHHHhcc--------------------HHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHhcchHHHHHH
Confidence 8888888888888 88888888888876 556677888888888888888888888
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q psy10738 223 HQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ 271 (609)
Q Consensus 223 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 271 (609)
|++++.-.+.. ..++.++|.++...|+.++|...|+++++...
T Consensus 177 y~~~~~~~p~~------~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 177 FERLSRQHPEF------ENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 88888722222 23788888888888888888888888887654
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.00 E-value=1.4e-08 Score=112.46 Aligned_cols=231 Identities=16% Similarity=0.065 Sum_probs=165.4
Q ss_pred CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhH
Q psy10738 94 EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVK 173 (609)
Q Consensus 94 ~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~ 173 (609)
+..+....++..|...|...|++++|+..++.+++..+ .....++.+|.++...++
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P------~~i~~yy~~G~l~~q~~~------------------ 80 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK------KSISALYISGILSLSRRP------------------ 80 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------cceehHHHHHHHHHhhcc------------------
Confidence 34677889999999999999999999999999988877 667799999999999888
Q ss_pred HhHHHHHHHHHHHHHHHH-------------HhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Q psy10738 174 VCLQEAIKYYEQNLALMK-------------EINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAER 240 (609)
Q Consensus 174 ~~~~~A~~~~~~al~~~~-------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 240 (609)
+.++... .++.+.. .+++.+..-.++..+|.+|-.+|++++|...|++++++.+....
T Consensus 81 --~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~----- 151 (906)
T PRK14720 81 --LNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPE----- 151 (906)
T ss_pred --hhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHH-----
Confidence 4444333 2222221 12223334468999999999999999999999999998755444
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHH
Q psy10738 241 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 320 (609)
Q Consensus 241 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 320 (609)
++.++|..|... +.++|+.++.+|+...-........-..|..+ +...-.+++.=....++.+.. -......
T Consensus 152 -aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~--~~~~~~d~d~f~~i~~ki~~~----~~~~~~~ 223 (906)
T PRK14720 152 -IVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKL--VHYNSDDFDFFLRIERKVLGH----REFTRLV 223 (906)
T ss_pred -HHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH--HhcCcccchHHHHHHHHHHhh----hccchhH
Confidence 999999999999 99999999999998755433222222222222 222222222222222222211 1122345
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q psy10738 321 RACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRK 371 (609)
Q Consensus 321 ~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~ 371 (609)
..+.-+-..|...+++++++.+++.++++. +....++..++++|.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~------~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHD------NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcC------CcchhhHHHHHHHHH
Confidence 566777789999999999999999999977 456678999999998
No 111
>KOG3617|consensus
Probab=99.00 E-value=7.7e-07 Score=94.32 Aligned_cols=251 Identities=16% Similarity=0.165 Sum_probs=157.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHcCCcHHH--
Q psy10738 66 LGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHL----EISRQLNDKLSE-- 139 (609)
Q Consensus 66 lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al----~l~~~~~d~~~~-- 139 (609)
+-..|...|.+++|.+..+ ..|....-..|++.+..+...++.+.|+++|+++- ++.+-+.+.+..
T Consensus 832 lNKlyQs~g~w~eA~eiAE--------~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 832 LNKLYQSQGMWSEAFEIAE--------TKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred HHHHHHhcccHHHHHHHHh--------hccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 3344555555555554332 23345566789999999999999999999999753 332222221111
Q ss_pred --------HHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHH-------------------H
Q psy10738 140 --------GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMK-------------------E 192 (609)
Q Consensus 140 --------~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-------------------~ 192 (609)
...|...|......|+ .+.|+.+|..|-..+. +
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~Ge--------------------mdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~e 963 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGE--------------------MDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEE 963 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccc--------------------hHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHh
Confidence 2356667777777888 7888888877755443 3
Q ss_pred hCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHHhCChHHHHH--------HHHHHHHHHHHhC-CHH
Q psy10738 193 INDTAAQGRACGNLGNTYYLLGNFKQAIYYHQER------LKIAREFGDKAAERR--------ANSNLGNSHIFLG-EYQ 257 (609)
Q Consensus 193 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~--------~~~~la~~~~~~g-~~~ 257 (609)
.+| -.+.+.||..|...|++.+|+.+|.+| +.++++++-...... -....|..|...| +.+
T Consensus 964 sgd----~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~ 1039 (1416)
T KOG3617|consen 964 SGD----KAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAH 1039 (1416)
T ss_pred ccc----HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhh
Confidence 333 247789999999999999999988765 566666544332211 1223345555555 666
Q ss_pred HHHHHHHHH------HHHH------------HHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH------HHHHHHh
Q psy10738 258 AASEHYKRT------LVLA------------QDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH------LIIAQQL 313 (609)
Q Consensus 258 ~A~~~~~~a------l~~~------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~~~~ 313 (609)
.|...|.+| ++++ .+.-+....+..+..-+..+....+|++|..++-.+ +.+....
T Consensus 1040 ~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~ 1119 (1416)
T KOG3617|consen 1040 KAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNR 1119 (1416)
T ss_pred HHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 666665443 2222 211122223556667788888888999998876554 4443321
Q ss_pred cc-------------------hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy10738 314 MD-------------------RVGEGRACWSLGNAHAARGNHEKALYFATKHLE 348 (609)
Q Consensus 314 ~~-------------------~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 348 (609)
+- ......++..+|.+..++|.|..|-+-|.+|-.
T Consensus 1120 nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1120 NVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD 1173 (1416)
T ss_pred CCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh
Confidence 11 123456788899999999999998887776643
No 112
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.99 E-value=6e-06 Score=91.44 Aligned_cols=322 Identities=11% Similarity=-0.005 Sum_probs=235.5
Q ss_pred hHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCH
Q psy10738 38 CRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYF-YLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKY 116 (609)
Q Consensus 38 ~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~ 116 (609)
...|+.+++.+++..+-.+...+.++..+|.+++ ...+++.|..++.+++.++++.+-......+.+.++.++...+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 3567888888886555566777899999999998 789999999999999999888555555677888889999999888
Q ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHH-HHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCC
Q psy10738 117 DEAMVCCKRHLEISRQLNDKLSEGRALYNL-GNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIND 195 (609)
Q Consensus 117 ~~A~~~~~~al~l~~~~~d~~~~~~~~~~l-g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 195 (609)
. |...++++++.....+..... .++..+ ...+...++ +..|++.++.........++
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~-~~frll~~~l~~~~~d--------------------~~~Al~~L~~~~~~a~~~~d 174 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWY-YAFRLLKIQLALQHKD--------------------YNAALENLQSIAQLANQRGD 174 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHH-HHHHHHHHHHHHhccc--------------------HHHHHHHHHHHHHHhhhcCC
Confidence 7 999999999998864443222 222223 333333368 99999999999999988899
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--C--ChHHHHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 196 TAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREF--G--DKAAERRANSNL--GNSHIFLGEYQAASEHYKRTLVL 269 (609)
Q Consensus 196 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~--~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~ 269 (609)
+.....+....+.++...+..+++++...++....... . .......++..+ -.+++..|+++.+...+++.-..
T Consensus 175 ~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~ 254 (608)
T PF10345_consen 175 PAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQF 254 (608)
T ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888999999999999999999997777654 0 011112233333 33566778888888777665554
Q ss_pred HHHcCCcH------------------------------------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q psy10738 270 AQDLGDRA------------------------------------VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 313 (609)
Q Consensus 270 ~~~~~~~~------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 313 (609)
.....+.. ..+.+|..-|......|..++|.+++.+++....+.
T Consensus 255 ~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~ 334 (608)
T PF10345_consen 255 LDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKL 334 (608)
T ss_pred HHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHh
Confidence 44332211 123334444666667787889999999999988876
Q ss_pred c---c-----------------hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCC---CchHHHHHHHHHHHH
Q psy10738 314 M---D-----------------RVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGD---PLGQVTAQMNVTDLR 370 (609)
Q Consensus 314 ~---~-----------------~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~---~~~~~~a~~~la~l~ 370 (609)
. . ......+...++.+..-.|++.+|....+.........+. .......++..|-.+
T Consensus 335 ~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~ 414 (608)
T PF10345_consen 335 KIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYY 414 (608)
T ss_pred hccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHH
Confidence 5 0 0112334556777888899999999999998888776654 344577888888889
Q ss_pred HHcCCCCCCCC
Q psy10738 371 KALGMSTNDLS 381 (609)
Q Consensus 371 ~~~g~~~~al~ 381 (609)
...|+.+.|+.
T Consensus 415 q~~g~l~~A~~ 425 (608)
T PF10345_consen 415 QSTGDLEAALY 425 (608)
T ss_pred HHcCCHHHHHH
Confidence 99998877654
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.98 E-value=1.2e-08 Score=95.30 Aligned_cols=180 Identities=19% Similarity=0.262 Sum_probs=146.2
Q ss_pred ChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCH
Q psy10738 37 DCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKY 116 (609)
Q Consensus 37 ~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~ 116 (609)
+...+...+-+....+|+|.. + ..++..+...|+-+.+..+..++... .+.....+..+|......|+|
T Consensus 48 q~~~a~~al~~~~~~~p~d~~----i-~~~a~a~~~~G~a~~~l~~~~~~~~~------~~~d~~ll~~~gk~~~~~g~~ 116 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLS----I-AKLATALYLRGDADSSLAVLQKSAIA------YPKDRELLAAQGKNQIRNGNF 116 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHH----H-HHHHHHHHhcccccchHHHHhhhhcc------CcccHHHHHHHHHHHHHhcch
Confidence 444466777777777888755 5 78889999999999888888876655 444555666689999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCCh
Q psy10738 117 DEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDT 196 (609)
Q Consensus 117 ~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 196 (609)
.+|+..+.++..+.+ ....++..+|.+|...|+ ++.|..-|.+++++.
T Consensus 117 ~~A~~~~rkA~~l~p------~d~~~~~~lgaaldq~Gr--------------------~~~Ar~ay~qAl~L~------ 164 (257)
T COG5010 117 GEAVSVLRKAARLAP------TDWEAWNLLGAALDQLGR--------------------FDEARRAYRQALELA------ 164 (257)
T ss_pred HHHHHHHHHHhccCC------CChhhhhHHHHHHHHccC--------------------hhHHHHHHHHHHHhc------
Confidence 999999999998877 667899999999999999 999999999999984
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 197 AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR 265 (609)
Q Consensus 197 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 265 (609)
+....+.+|+|..|+..|+++.|..++..+........ .+..|++.+....|++.+|.....+
T Consensus 165 ~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~------~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 165 PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS------RVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCch------HHHHHHHHHHhhcCChHHHHhhccc
Confidence 34456889999999999999999999988866433222 3778999999999999999876644
No 114
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.94 E-value=3.1e-07 Score=88.83 Aligned_cols=188 Identities=13% Similarity=-0.025 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHH
Q psy10738 21 MCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEA 100 (609)
Q Consensus 21 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~ 100 (609)
..-..+..|..++..|+|++|+..|++++...|..+ ....+.+.+|.+|+..+++++|+..+++.++..+. .+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~-~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~---~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP-YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT---HPNID 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC---CCchH
Confidence 455677789999999999999999999999999774 45567889999999999999999999999888544 56677
Q ss_pred HHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCC
Q psy10738 101 KSSGNLGNTLKVMG---------------K---YDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQ 162 (609)
Q Consensus 101 ~a~~~lg~~~~~~g---------------~---~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~ 162 (609)
.+++.+|.++...+ + ..+|+..+++.++..|.. ..
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S---~y------------------------ 159 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS---QY------------------------ 159 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC---hh------------------------
Confidence 88999998865554 1 234556666666555522 11
Q ss_pred CCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHH
Q psy10738 163 QDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRA 242 (609)
Q Consensus 163 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 242 (609)
..+|...+.... ...+.--..+|..|...|.|..|+.-++..++-.+.. .....+
T Consensus 160 -------------a~~A~~rl~~l~---------~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t---~~~~ea 214 (243)
T PRK10866 160 -------------TTDATKRLVFLK---------DRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDT---QATRDA 214 (243)
T ss_pred -------------HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCC---chHHHH
Confidence 122222211111 1122233467888888888888888888877755543 334557
Q ss_pred HHHHHHHHHHhCCHHHHHHHHH
Q psy10738 243 NSNLGNSHIFLGEYQAASEHYK 264 (609)
Q Consensus 243 ~~~la~~~~~~g~~~~A~~~~~ 264 (609)
+..++..|..+|..++|..+..
T Consensus 215 l~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 215 LPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHcCChHHHHHHHH
Confidence 8888888888888888876654
No 115
>KOG1128|consensus
Probab=98.94 E-value=2e-08 Score=105.41 Aligned_cols=221 Identities=19% Similarity=0.154 Sum_probs=158.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
.+.|+.+...|-...|+..|++.- .+.....||...|+..+|.....+-++. +..+..|..
T Consensus 402 ~~laell~slGitksAl~I~Erle------------mw~~vi~CY~~lg~~~kaeei~~q~lek-------~~d~~lyc~ 462 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE------------MWDPVILCYLLLGQHGKAEEINRQELEK-------DPDPRLYCL 462 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH------------HHHHHHHHHHHhcccchHHHHHHHHhcC-------CCcchhHHH
Confidence 344778888888888888887742 4555667777888888887776655441 223344444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
+| ++-.=-.+|+++.++... ..+++...+|......++ |.++.++++.
T Consensus 463 LG-------Dv~~d~s~yEkawElsn~-----~sarA~r~~~~~~~~~~~--------------------fs~~~~hle~ 510 (777)
T KOG1128|consen 463 LG-------DVLHDPSLYEKAWELSNY-----ISARAQRSLALLILSNKD--------------------FSEADKHLER 510 (777)
T ss_pred hh-------hhccChHHHHHHHHHhhh-----hhHHHHHhhccccccchh--------------------HHHHHHHHHH
Confidence 44 444444566666666553 334566777777777777 8888888888
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 186 NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR 265 (609)
Q Consensus 186 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 265 (609)
++++ .+.....|+.+|.+..+++++..|.++|..++.+.+.... +|+|++.+|+..|+-.+|...+++
T Consensus 511 sl~~------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~e------aWnNls~ayi~~~~k~ra~~~l~E 578 (777)
T KOG1128|consen 511 SLEI------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAE------AWNNLSTAYIRLKKKKRAFRKLKE 578 (777)
T ss_pred Hhhc------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchh------hhhhhhHHHHHHhhhHHHHHHHHH
Confidence 8887 5666778888888888888888888888888887776655 888888888888888888888888
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc
Q psy10738 266 TLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD 315 (609)
Q Consensus 266 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 315 (609)
|++...+. ..++.+.-.+....|.+++|+..|.+.+.+.....+
T Consensus 579 AlKcn~~~------w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d 622 (777)
T KOG1128|consen 579 ALKCNYQH------WQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKD 622 (777)
T ss_pred HhhcCCCC------CeeeechhhhhhhcccHHHHHHHHHHHHHhhhhccc
Confidence 88765322 445666666777888888888888888877666544
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.93 E-value=4.4e-08 Score=107.85 Aligned_cols=160 Identities=8% Similarity=-0.047 Sum_probs=137.2
Q ss_pred HHHhcCChHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q psy10738 31 RLCKAGDCRAGVAFFQAAIQA---GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLG 107 (609)
Q Consensus 31 ~~~~~g~~~~A~~~~~~al~~---~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg 107 (609)
+.-..|....+.+.+-+++.. .|.+ +.++..||.+....|.+++|..+++.++++ .|....+..+++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~La~i~~~~g~~~ea~~~l~~~~~~------~Pd~~~a~~~~a 127 (694)
T PRK15179 58 VLERHAAVHKPAAALPELLDYVRRYPHT----ELFQVLVARALEAAHRSDEGLAVWRGIHQR------FPDSSEAFILML 127 (694)
T ss_pred HHHHhhhhcchHhhHHHHHHHHHhcccc----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh------CCCcHHHHHHHH
Confidence 344445555555555555544 4444 558999999999999999999999999999 888999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHH
Q psy10738 108 NTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNL 187 (609)
Q Consensus 108 ~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 187 (609)
.++...+++++|+..+++++...+ ..+.+++.+|.++...|+ |++|+..|++++
T Consensus 128 ~~L~~~~~~eeA~~~~~~~l~~~p------~~~~~~~~~a~~l~~~g~--------------------~~~A~~~y~~~~ 181 (694)
T PRK15179 128 RGVKRQQGIEAGRAEIELYFSGGS------SSAREILLEAKSWDEIGQ--------------------SEQADACFERLS 181 (694)
T ss_pred HHHHHhccHHHHHHHHHHHhhcCC------CCHHHHHHHHHHHHHhcc--------------------hHHHHHHHHHHH
Confidence 999999999999999999999887 678899999999999999 999999999998
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 188 ALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 232 (609)
.- .+....++.++|.++...|+.++|...|+++++....
T Consensus 182 ~~------~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 182 RQ------HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred hc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 73 3445679999999999999999999999999987654
No 117
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.93 E-value=4.1e-05 Score=84.86 Aligned_cols=327 Identities=11% Similarity=-0.008 Sum_probs=226.1
Q ss_pred HHHHH-hcCChHHHHHHHHHHHHhCC--cchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 29 GERLC-KAGDCRAGVAFFQAAIQAGT--DDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 29 g~~~~-~~g~~~~A~~~~~~al~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
|.+++ ...+++.|..++++++.+.. +-.+....+.+.++.++...+... |...+.+.++.++..+.........+.
T Consensus 66 a~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll 144 (608)
T PF10345_consen 66 ASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLL 144 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 66665 78899999999999988764 333344566778899998888777 999999999998875544333222222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
....+...+++..|++.++....+....+++.....+....+.++...+. .+.+++...+
T Consensus 145 ~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~--------------------~~d~~~~l~~ 204 (608)
T PF10345_consen 145 KIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS--------------------PDDVLELLQR 204 (608)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC--------------------chhHHHHHHH
Confidence 23333334899999999999999998888888888888888888888887 7778888888
Q ss_pred HHHHHHHh--CC--hHHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhCCh-----------------------
Q psy10738 186 NLALMKEI--ND--TAAQGRACGNL--GNTYYLLGNFKQAIYYHQERLKIAREFGDK----------------------- 236 (609)
Q Consensus 186 al~~~~~~--~~--~~~~~~~~~~l--g~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------- 236 (609)
+....... .. ......++..+ -.++...|+++.+...+++.-.........
T Consensus 205 ~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~ 284 (608)
T PF10345_consen 205 AIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNS 284 (608)
T ss_pred HHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccC
Confidence 77666644 11 12222233333 335566788888877766654444332111
Q ss_pred -------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC---Cc-----------------HHHHHHH
Q psy10738 237 -------------AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG---DR-----------------AVEAQAC 283 (609)
Q Consensus 237 -------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~-----------------~~~~~~~ 283 (609)
...+.+|..-|......+..++|.+++.+++....+.. +. .....+.
T Consensus 285 ~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~ 364 (608)
T PF10345_consen 285 GGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLL 364 (608)
T ss_pred CCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHH
Confidence 11234555556677777888899999999999887754 00 1123455
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc---hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-----HcCC
Q psy10738 284 YSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD---RVGEGRACWSLGNAHAARGNHEKALYFATKHLEISK-----QLGD 355 (609)
Q Consensus 284 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~-----~~~~ 355 (609)
..++.+....+++.+|..............+. ......+++..|..+...|+.+.|..+|.+..-... ....
T Consensus 365 ~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~ 444 (608)
T PF10345_consen 365 FYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKF 444 (608)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcc
Confidence 66788888999999999999988887766544 344567888999999999999999999985552221 1222
Q ss_pred CchHHHHHHHHHHHHHHcCCC
Q psy10738 356 PLGQVTAQMNVTDLRKALGMS 376 (609)
Q Consensus 356 ~~~~~~a~~~la~l~~~~g~~ 376 (609)
.....-+..++.-++...+..
T Consensus 445 ~El~ila~LNl~~I~~~~~~~ 465 (608)
T PF10345_consen 445 RELYILAALNLAIILQYESSR 465 (608)
T ss_pred hHHHHHHHHHHHHHhHhhccc
Confidence 233445666666666655543
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.92 E-value=2.4e-08 Score=93.20 Aligned_cols=158 Identities=23% Similarity=0.285 Sum_probs=138.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
+..+..++..|+-+.+..+..++....|.+.. ++..+|...+..|+|..|+..++++..+ .+....++..
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~----ll~~~gk~~~~~g~~~~A~~~~rkA~~l------~p~d~~~~~~ 139 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRE----LLAAQGKNQIRNGNFGEAVSVLRKAARL------APTDWEAWNL 139 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHH----HHHHHHHHHHHhcchHHHHHHHHHHhcc------CCCChhhhhH
Confidence 44577788889999999999998888887754 4555999999999999999999999999 8889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
+|.+|...|++++|..-|.+++++.+ ....+..|+|..|...|+ ++.|..++..
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~------~~p~~~nNlgms~~L~gd--------------------~~~A~~lll~ 193 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAP------NEPSIANNLGMSLLLRGD--------------------LEDAETLLLP 193 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhcc------CCchhhhhHHHHHHHcCC--------------------HHHHHHHHHH
Confidence 99999999999999999999999988 566799999999999999 9999999988
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10738 186 NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQE 225 (609)
Q Consensus 186 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 225 (609)
+... ......+..|++.+....|++++|.....+
T Consensus 194 a~l~------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 194 AYLS------PAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHhC------CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 7654 344456889999999999999999877654
No 119
>KOG2376|consensus
Probab=98.92 E-value=2.4e-06 Score=88.02 Aligned_cols=206 Identities=19% Similarity=0.129 Sum_probs=149.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.++..-..+...|+|++|+....+.+...|++.. +...--.+....+.|++|+...+.-... .......
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~----a~~cKvValIq~~ky~~ALk~ikk~~~~-------~~~~~~~ 82 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDED----AIRCKVVALIQLDKYEDALKLIKKNGAL-------LVINSFF 82 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHh----hHhhhHhhhhhhhHHHHHHHHHHhcchh-------hhcchhh
Confidence 3444566778899999999999999999988754 5566667788889999998554432221 1111122
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
+..+.|.+.++..++|+..++-+ .. ....++...|.+++.+|+ |++|...|
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~~----~~-----~~~~ll~L~AQvlYrl~~--------------------ydealdiY 133 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKGL----DR-----LDDKLLELRAQVLYRLER--------------------YDEALDIY 133 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhcc----cc-----cchHHHHHHHHHHHHHhh--------------------HHHHHHHH
Confidence 68899999999999999998811 11 112356677888888888 88888888
Q ss_pred HHHHHHH------------------------HHhCC-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---CC
Q psy10738 184 EQNLALM------------------------KEIND-TAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREF---GD 235 (609)
Q Consensus 184 ~~al~~~------------------------~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~ 235 (609)
+..++-- +.... +......++|.+.++...|+|.+|++.+++++.++.+. ++
T Consensus 134 ~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d 213 (652)
T KOG2376|consen 134 QHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDED 213 (652)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccc
Confidence 7763210 00010 11234578999999999999999999999998888762 11
Q ss_pred ------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 236 ------KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 269 (609)
Q Consensus 236 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 269 (609)
......+...++.++..+|+.++|...|...+..
T Consensus 214 ~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 214 TNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 1223567888999999999999999999887664
No 120
>KOG2300|consensus
Probab=98.91 E-value=9e-06 Score=81.90 Aligned_cols=299 Identities=14% Similarity=0.040 Sum_probs=214.2
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHh----CCc------------chhH-------HHHHHHHH--HHHHHHhCC
Q psy10738 21 MCLELALEGERLCKAGDCRAGVAFFQAAIQA----GTD------------DLRT-------LSAIYSQL--GNAYFYLGD 75 (609)
Q Consensus 21 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~------------~~~~-------~a~~~~~l--g~~~~~~g~ 75 (609)
..+-+.++-..|...|+-..+...+++.-+. .+. .+.. ...++..+ -..-...|-
T Consensus 211 kvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy 290 (629)
T KOG2300|consen 211 KVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGY 290 (629)
T ss_pred HHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHH
Confidence 3444555666777888888887777755331 110 0110 11111111 111224578
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc----HHHHHHH
Q psy10738 76 YQKAMQYHKQDLTLARNMEDKLGE--------AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDK----LSEGRAL 143 (609)
Q Consensus 76 ~~~A~~~~~~al~~~~~~~d~~~~--------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~----~~~~~~~ 143 (609)
+++|.++-++++....+....+.. ...+-++..+-...|++.+|++....+.+.......+ ...+.++
T Consensus 291 ~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih 370 (629)
T KOG2300|consen 291 FKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIH 370 (629)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHH
Confidence 899999999999887776544322 3345566777788899999999999999888776653 2456677
Q ss_pred HHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10738 144 YNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYH 223 (609)
Q Consensus 144 ~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 223 (609)
+.+|......+. |+.|...|..|.+.... ....+.+..|+|.+|...|+-+.-.+.+
T Consensus 371 ~LlGlys~sv~~--------------------~enAe~hf~~a~k~t~~---~dl~a~~nlnlAi~YL~~~~~ed~y~~l 427 (629)
T KOG2300|consen 371 MLLGLYSHSVNC--------------------YENAEFHFIEATKLTES---IDLQAFCNLNLAISYLRIGDAEDLYKAL 427 (629)
T ss_pred HHHhhHhhhcch--------------------HHHHHHHHHHHHHhhhH---HHHHHHHHHhHHHHHHHhccHHHHHHHH
Confidence 888888888888 99999999999887544 3446778889999999988754433222
Q ss_pred HHHHHHHHHhC----ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 224 QERLKIAREFG----DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA 299 (609)
Q Consensus 224 ~~al~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 299 (609)
+. +.+.+. .....+.+++..|...+.++++.+|...+.+.++++...+.....+..+..||.+....|+..++
T Consensus 428 d~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es 504 (629)
T KOG2300|consen 428 DL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVES 504 (629)
T ss_pred Hh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 22 222211 12334668888999999999999999999999999865555666777888999999999999999
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCC--hHHHHHHHHH
Q psy10738 300 IDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGN--HEKALYFATK 345 (609)
Q Consensus 300 ~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~--~~~A~~~~~~ 345 (609)
.+...-++.++.++.|........-.+-.+|...|+ ...+.+.+.+
T Consensus 505 ~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 505 RNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 999999999999999977777777778888999998 5555555554
No 121
>KOG3785|consensus
Probab=98.90 E-value=1.7e-07 Score=90.36 Aligned_cols=274 Identities=18% Similarity=0.142 Sum_probs=168.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q psy10738 30 ERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNT 109 (609)
Q Consensus 30 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~ 109 (609)
+-+....||..|+.+++-.+..+.+. ....-.++|.|++++|+|++|+..|+-+... ....++...+++-+
T Consensus 30 edfls~rDytGAislLefk~~~~~EE---E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~------~~~~~el~vnLAcc 100 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREE---EDSLQLWIAHCYFHLGDYEEALNVYTFLMNK------DDAPAELGVNLACC 100 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhh---hHHHHHHHHHHHHhhccHHHHHHHHHHHhcc------CCCCcccchhHHHH
Confidence 45677889999999999988665432 2346678999999999999999999876653 33456788999999
Q ss_pred HHHcCCHHHHHHHHHHHH----------HHHHHcCCcHHHHHHH----------HHHHHHHHHcccccccCCCCCCCCCc
Q psy10738 110 LKVMGKYDEAMVCCKRHL----------EISRQLNDKLSEGRAL----------YNLGNVYHAKGKAIGKVGQQDPGEYP 169 (609)
Q Consensus 110 ~~~~g~~~~A~~~~~~al----------~l~~~~~d~~~~~~~~----------~~lg~~~~~~g~~~~~~~~~~~~~~~ 169 (609)
++.+|.|.+|.....++- .++.+.+|.......+ ..||.+++..-.
T Consensus 101 ~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~H-------------- 166 (557)
T KOG3785|consen 101 KFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMH-------------- 166 (557)
T ss_pred HHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHH--------------
Confidence 999999999988766542 2333444433332222 233444444444
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q psy10738 170 EEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNS 249 (609)
Q Consensus 170 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 249 (609)
|++|++.|.+.+.- .+.......+++.+|+++.-|+-+.+.+.--+.-. ++... +....+-.
T Consensus 167 ------YQeAIdvYkrvL~d------n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~---pdSti---A~NLkacn 228 (557)
T KOG3785|consen 167 ------YQEAIDVYKRVLQD------NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF---PDSTI---AKNLKACN 228 (557)
T ss_pred ------HHHHHHHHHHHHhc------ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC---CCcHH---HHHHHHHH
Confidence 77777777766543 55556667788999999988888877766554433 33221 22222222
Q ss_pred HHHh--CC----------------HHHHHHHHH----------HHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHH
Q psy10738 250 HIFL--GE----------------YQAASEHYK----------RTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 301 (609)
Q Consensus 250 ~~~~--g~----------------~~~A~~~~~----------~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 301 (609)
++++ |+ |+.+...++ -|++..+.+-+ ..+.+..+|...|..+++..+|+.
T Consensus 229 ~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~--~IPEARlNL~iYyL~q~dVqeA~~ 306 (557)
T KOG3785|consen 229 LFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK--HIPEARLNLIIYYLNQNDVQEAIS 306 (557)
T ss_pred HhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh--hChHhhhhheeeecccccHHHHHH
Confidence 2221 22 222222221 12333332211 235567788888888888888876
Q ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCC
Q psy10738 302 YHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGD 355 (609)
Q Consensus 302 ~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~ 355 (609)
..+..-. ....-+...|.++.++|+--...++.+-|-+.+.-.|.
T Consensus 307 L~Kdl~P---------ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~ 351 (557)
T KOG3785|consen 307 LCKDLDP---------TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGE 351 (557)
T ss_pred HHhhcCC---------CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcc
Confidence 6543211 12234566677777777766666666666555554443
No 122
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.87 E-value=3.3e-08 Score=77.67 Aligned_cols=75 Identities=29% Similarity=0.510 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q psy10738 197 AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKA-AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ 271 (609)
Q Consensus 197 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 271 (609)
+..+.++.++|.+|..+|+|++|+.+|++++++....++.. ..+.++.++|.++...|++++|++++++++++.+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 45567778888888888888888888888888866666544 3577777888888888888888888888777654
No 123
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.86 E-value=2.5e-08 Score=87.59 Aligned_cols=112 Identities=13% Similarity=0.217 Sum_probs=89.1
Q ss_pred HHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHH
Q psy10738 43 AFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122 (609)
Q Consensus 43 ~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~ 122 (609)
+.|++++..+|++. .+...+|..+...|++++|+..+++++.. .+....++..+|.++...|++++|+.+
T Consensus 4 ~~~~~~l~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~~~~~~A~~~ 73 (135)
T TIGR02552 4 ATLKDLLGLDSEQL----EQIYALAYNLYQQGRYDEALKLFQLLAAY------DPYNSRYWLGLAACCQMLKEYEEAIDA 73 (135)
T ss_pred hhHHHHHcCChhhH----HHHHHHHHHHHHcccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888887763 36778888888888888888888888777 566778888888888888888888888
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH
Q psy10738 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 123 ~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 190 (609)
+++++.+.+ .....++.+|.+|...|+ +++|+.++++++++.
T Consensus 74 ~~~~~~~~p------~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 74 YALAAALDP------DDPRPYFHAAECLLALGE--------------------PESALKALDLAIEIC 115 (135)
T ss_pred HHHHHhcCC------CChHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHhc
Confidence 888877654 445677888888888888 888888888888764
No 124
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.85 E-value=3.7e-08 Score=101.18 Aligned_cols=98 Identities=16% Similarity=0.266 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.+..+|..++..|+|++|+.+|.++++.+|.+. .++..+|.+|..+|++++|+..+++++.+ .+....++
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~----~a~~~~a~~~~~~g~~~eAl~~~~~Al~l------~P~~~~a~ 73 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA----ELYADRAQANIKLGNFTEAVADANKAIEL------DPSLAKAY 73 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcCCHHHH
Confidence 466779999999999999999999999999885 48899999999999999999999999999 77788999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
+.+|.++..+|+|++|+.+|++++.+.+
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999876
No 125
>KOG1585|consensus
Probab=98.85 E-value=1.4e-06 Score=80.21 Aligned_cols=212 Identities=9% Similarity=-0.013 Sum_probs=170.1
Q ss_pred cHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCC
Q psy10738 136 KLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGN 215 (609)
Q Consensus 136 ~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 215 (609)
....+..|..-+..|....+ |++|...+.+|.+..+.......-+.++-..|.+...+..
T Consensus 27 ~dgaas~yekAAvafRnAk~--------------------feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~k 86 (308)
T KOG1585|consen 27 WDGAASLYEKAAVAFRNAKK--------------------FEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSK 86 (308)
T ss_pred chhhHHHHHHHHHHHHhhcc--------------------HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666777777788 9999999999998888877778888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCC
Q psy10738 216 FKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD 295 (609)
Q Consensus 216 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 295 (609)
+.++..+++++..++.+.+.+...+.++-.-|.+ +..-+.++|+.+|++++.+....+........+...++++.....
T Consensus 87 lsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~-lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 87 LSEVVDLYEKASELYVECGSPDTAAMALEKAAKA-LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred hHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 9999999999999999999877766666555554 466789999999999999998876666667778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q psy10738 296 YPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLR 370 (609)
Q Consensus 296 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~ 370 (609)
+++|-..+.+-..+.............+.....+|....+|..|..+++...++-.-.+ +...++..+|-..|
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~--sed~r~lenLL~ay 238 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLK--SEDSRSLENLLTAY 238 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccC--hHHHHHHHHHHHHh
Confidence 99999999988888777766666667777777888888899999999988766542222 34555666665555
No 126
>KOG4340|consensus
Probab=98.85 E-value=2.6e-07 Score=87.26 Aligned_cols=223 Identities=18% Similarity=0.166 Sum_probs=160.2
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q psy10738 32 LCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLK 111 (609)
Q Consensus 32 ~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~ 111 (609)
+.+..+|..||+++..-.+.+|.+. ..+..+|.||++..+|..|..+|++.-.+ .|.........+..++
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~r----AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql------~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSR----AGLSLLGYCYYRLQEFALAAECYEQLGQL------HPELEQYRLYQAQSLY 89 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccch----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh------ChHHHHHHHHHHHHHH
Confidence 4677789999999999998888663 37789999999999999999999998888 6667777778888999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHH
Q psy10738 112 VMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMK 191 (609)
Q Consensus 112 ~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 191 (609)
..+.+..|+.......+. ......++-.-+.+.+..++ +..+....++
T Consensus 90 ~A~i~ADALrV~~~~~D~------~~L~~~~lqLqaAIkYse~D--------------------l~g~rsLveQ------ 137 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN------PALHSRVLQLQAAIKYSEGD--------------------LPGSRSLVEQ------ 137 (459)
T ss_pred HhcccHHHHHHHHHhcCC------HHHHHHHHHHHHHHhccccc--------------------CcchHHHHHh------
Confidence 999999988776544332 22334455555556666666 5555444333
Q ss_pred HhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q psy10738 192 EINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ 271 (609)
Q Consensus 192 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 271 (609)
.. ....+....+.|.+.++.|+|+.|++-|+.+++...-..- .-++++.+++..|++..|+++..+.++..-
T Consensus 138 -lp-~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl------lAYniALaHy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 138 -LP-SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL------LAYNLALAHYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred -cc-CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch------hHHHHHHHHHhhhhHHHHHHHHHHHHHhhh
Confidence 11 1234567889999999999999999999999886433222 667899999999999999999887766432
Q ss_pred Hc----C--------------Cc-----HHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy10738 272 DL----G--------------DR-----AVEAQACYSLGNTYTLLRDYPTAIDYHL 304 (609)
Q Consensus 272 ~~----~--------------~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~ 304 (609)
.. + ++ .....++...+.++++.|+++.|.+.+.
T Consensus 210 r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 210 RQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred hcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 21 0 00 1123445555666777777777765553
No 127
>KOG1586|consensus
Probab=98.84 E-value=3.2e-06 Score=77.38 Aligned_cols=194 Identities=15% Similarity=0.170 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHH
Q psy10738 61 AIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEG 140 (609)
Q Consensus 61 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~ 140 (609)
.++..-|+.|....++..|=..|.++-+...+.++....+..|...+++|... +..+|+.+++++++++...|.-..-+
T Consensus 35 dl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~aA 113 (288)
T KOG1586|consen 35 ELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMAA 113 (288)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34444566777778888888888888888888888788888888888888765 99999999999999999888777778
Q ss_pred HHHHHHHHHHHHc-ccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHH
Q psy10738 141 RALYNLGNVYHAK-GKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQA 219 (609)
Q Consensus 141 ~~~~~lg~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 219 (609)
.-+..+|.+|..- .+ +++|+.+|+++-+.++.-......-.++...+..-..+++|.+|
T Consensus 114 k~~~~iaEiyEsdl~d--------------------~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~A 173 (288)
T KOG1586|consen 114 KHHIEIAEIYESDLQD--------------------FEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKA 173 (288)
T ss_pred hhhhhHHHHHhhhHHH--------------------HHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999998765 66 99999999999998876555555556777888888899999999
Q ss_pred HHHHHHHHHHHHHhCChHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q psy10738 220 IYYHQERLKIAREFGDKAAER-RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD 275 (609)
Q Consensus 220 ~~~~~~al~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 275 (609)
+..|++.....-.+.-..+.+ ..+..-|.+++...+.-.+...+++..++.|...+
T Consensus 174 i~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 174 IDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 999998876554433222222 23445667777778887777777777777776644
No 128
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.84 E-value=6.4e-07 Score=84.52 Aligned_cols=107 Identities=16% Similarity=0.115 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
-.++..|..++..|+|.+|+..|++++...|..+. ...+.+.+|.+++..|+++.|+..+++.+...+. .+....+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~-a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~---~~~~~~A 81 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY-APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN---SPKADYA 81 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----TTHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CcchhhH
Confidence 45677899999999999999999999999987654 5678899999999999999999999998887554 5566788
Q ss_pred HHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHc
Q psy10738 103 SGNLGNTLKVMG-----------KYDEAMVCCKRHLEISRQL 133 (609)
Q Consensus 103 ~~~lg~~~~~~g-----------~~~~A~~~~~~al~l~~~~ 133 (609)
++.+|.++.... ...+|+..|+..+...|..
T Consensus 82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S 123 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNS 123 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTS
T ss_pred HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCc
Confidence 999998876653 2346777777766666543
No 129
>KOG1586|consensus
Probab=98.83 E-value=2e-06 Score=78.75 Aligned_cols=204 Identities=13% Similarity=0.109 Sum_probs=149.1
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHH
Q psy10738 112 VMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMK 191 (609)
Q Consensus 112 ~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 191 (609)
-.+++++|.++|.++-.+++-..+ +..|-..|.++-++..
T Consensus 26 g~~k~eeAadl~~~Aan~yklaK~----------------------------------------w~~AG~aflkaA~~h~ 65 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAANMYKLAKN----------------------------------------WSAAGDAFLKAADLHL 65 (288)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHh----------------------------------------HHHHHHHHHHHHHHHH
Confidence 345788888888887766653333 4455555555555555
Q ss_pred HhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHH
Q psy10738 192 EINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL-GEYQAASEHYKRTLVLA 270 (609)
Q Consensus 192 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~ 270 (609)
+.++....+.+|...+++|.. ++..+|+.+++++++++...+.-..-+.-+..+|.+|..- .++++|+.+|+++-+.+
T Consensus 66 k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y 144 (288)
T KOG1586|consen 66 KAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYY 144 (288)
T ss_pred hcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 555555556666666776654 5999999999999999999888777778888999999865 89999999999999988
Q ss_pred HHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy10738 271 QDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD-RVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349 (609)
Q Consensus 271 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l 349 (609)
..-........++...+..-...++|.+|+..|++.....-..+- .+.....++.-|.|++..++.-.+...+++..++
T Consensus 145 k~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 145 KGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 765444445567777888888999999999999987665443322 3344455667788888888888888777777776
Q ss_pred HHHcCCC
Q psy10738 350 SKQLGDP 356 (609)
Q Consensus 350 ~~~~~~~ 356 (609)
.....+.
T Consensus 225 dP~F~ds 231 (288)
T KOG1586|consen 225 DPAFTDS 231 (288)
T ss_pred CCccccc
Confidence 6555443
No 130
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.82 E-value=6.2e-08 Score=76.08 Aligned_cols=76 Identities=33% Similarity=0.618 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHcCC
Q psy10738 137 LSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTA-AQGRACGNLGNTYYLLGN 215 (609)
Q Consensus 137 ~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~lg~~~~~~g~ 215 (609)
+..+.++.++|.+|...|+ |++|+.+|++++++.+..++.. ..+.++.++|.++..+|+
T Consensus 2 ~~~a~~~~~la~~~~~~~~--------------------~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~ 61 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGR--------------------YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT---------------------HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC
Confidence 3567899999999999999 9999999999999977777654 579999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10738 216 FKQAIYYHQERLKIARE 232 (609)
Q Consensus 216 ~~~A~~~~~~al~~~~~ 232 (609)
+++|+.++++++++.++
T Consensus 62 ~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 62 YEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcC
Confidence 99999999999998753
No 131
>KOG3060|consensus
Probab=98.82 E-value=1.4e-06 Score=80.81 Aligned_cols=195 Identities=16% Similarity=0.050 Sum_probs=135.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Q psy10738 74 GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAK 153 (609)
Q Consensus 74 g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~ 153 (609)
.+.++-++...+.+.....-.-.+.....+-....+....|+.+-|..|+++...-++ ...++...-|..+...
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp------~S~RV~~lkam~lEa~ 99 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP------GSKRVGKLKAMLLEAT 99 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC------CChhHHHHHHHHHHHh
Confidence 3455556666555554443222334455666667777778888888888887666554 3345566677788888
Q ss_pred ccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy10738 154 GKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREF 233 (609)
Q Consensus 154 g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (609)
|. +++|+++|+..++- .+....++-..--+...+|+.-+|++.+.+-++.+...
T Consensus 100 ~~--------------------~~~A~e~y~~lL~d------dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D 153 (289)
T KOG3060|consen 100 GN--------------------YKEAIEYYESLLED------DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND 153 (289)
T ss_pred hc--------------------hhhHHHHHHHHhcc------CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc
Confidence 88 88888888876653 34444455555556667788888888888877776654
Q ss_pred CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHH
Q psy10738 234 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR---DYPTAIDYHLRHLIIA 310 (609)
Q Consensus 234 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~ 310 (609)
.+ +|..++.+|+..|+|++|.-+|++.+-+.|-. ...+..+|.+++-+| ++.-|.+||.+++++.
T Consensus 154 ~E------AW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n------~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 154 QE------AWHELAEIYLSEGDFEKAAFCLEELLLIQPFN------PLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HH------HHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 44 88889999999999999999998887766542 455666777766555 5778888999998887
Q ss_pred HH
Q psy10738 311 QQ 312 (609)
Q Consensus 311 ~~ 312 (609)
+.
T Consensus 222 ~~ 223 (289)
T KOG3060|consen 222 PK 223 (289)
T ss_pred hH
Confidence 73
No 132
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.81 E-value=7.9e-08 Score=83.98 Aligned_cols=99 Identities=11% Similarity=0.058 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
-.++..|..++..|++++|..+|+-+...+|.+. ..|+.||.++..+|+|.+|+..|.+++.+ .+..+..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~----~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L------~~ddp~~ 105 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF----DYWFRLGECCQAQKHWGEAIYAYGRAAQI------KIDAPQA 105 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CCCCchH
Confidence 4556669999999999999999999999999874 48999999999999999999999999999 7888999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
+.++|.++...|+.+.|.+.|+.++....
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999884
No 133
>KOG3617|consensus
Probab=98.80 E-value=1.4e-05 Score=85.03 Aligned_cols=232 Identities=16% Similarity=0.164 Sum_probs=145.8
Q ss_pred chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----HHHcCChhhH----------HHHHHHHHHHHHHcCCHHHHH
Q psy10738 55 DLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTL----ARNMEDKLGE----------AKSSGNLGNTLKVMGKYDEAM 120 (609)
Q Consensus 55 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~~~~~d~~~~----------~~a~~~lg~~~~~~g~~~~A~ 120 (609)
|.-.+-..|++.+..+...++.+.|+++|+++-.. .+-+.+.+.. ...|...|..+...|+.+.|+
T Consensus 853 DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 853 DRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred cceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHH
Confidence 33335567889999999999999999999986332 2222222222 346677899999999999999
Q ss_pred HHHHHHHHHHHHcC------C---------cHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 121 VCCKRHLEISRQLN------D---------KLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 121 ~~~~~al~l~~~~~------d---------~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
.+|..|-+.+.... . ....-.+.+.||..|...|+ +.+|+.+|.+
T Consensus 933 ~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~--------------------v~~Av~FfTr 992 (1416)
T KOG3617|consen 933 SFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGD--------------------VVKAVKFFTR 992 (1416)
T ss_pred HHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHH--------------------HHHHHHHHHH
Confidence 99988776544221 0 11223478899999999999 8999988876
Q ss_pred H------HHHHHHhCChHHHHH--------HHHHHHHHHHHcC-CHHHHHHHHHHH------HHHH------------HH
Q psy10738 186 N------LALMKEINDTAAQGR--------ACGNLGNTYYLLG-NFKQAIYYHQER------LKIA------------RE 232 (609)
Q Consensus 186 a------l~~~~~~~~~~~~~~--------~~~~lg~~~~~~g-~~~~A~~~~~~a------l~~~------------~~ 232 (609)
| +.++++.+-...... -....+..|...| ++..|...|.+| ++++ .+
T Consensus 993 AqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~ 1072 (1416)
T KOG3617|consen 993 AQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAK 1072 (1416)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHH
Confidence 5 445554432221111 1222344455555 666776666554 2222 22
Q ss_pred hCChHHHHHHHHHHHHHHHHhCCHHHHHHHHH------HHHHHHHHcCC-------------------cHHHHHHHHHHH
Q psy10738 233 FGDKAAERRANSNLGNSHIFLGEYQAASEHYK------RTLVLAQDLGD-------------------RAVEAQACYSLG 287 (609)
Q Consensus 233 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~------~al~~~~~~~~-------------------~~~~~~~~~~la 287 (609)
.-+.......+..-+..+....+|++|..++- .|+.+....+- ......++..+|
T Consensus 1073 DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqva 1152 (1416)
T KOG3617|consen 1073 DLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVA 1152 (1416)
T ss_pred hcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHH
Confidence 11111123345556777778888888877654 44444433221 122456788899
Q ss_pred HHHHHhCCHHHHHHHHHHH
Q psy10738 288 NTYTLLRDYPTAIDYHLRH 306 (609)
Q Consensus 288 ~~~~~~g~~~~A~~~~~~a 306 (609)
.++.++|.|..|-+-|.+|
T Consensus 1153 e~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1153 ELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHhccchHHHHHHHhhh
Confidence 9999999999988877664
No 134
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.78 E-value=3.7e-06 Score=83.08 Aligned_cols=238 Identities=18% Similarity=0.119 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
..+...++..-..||++.|-.++.++-+..+++. -.++...+......|+++.|..-..++++. .+....+
T Consensus 119 l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~---l~v~ltrarlll~~~d~~aA~~~v~~ll~~------~pr~~~v 189 (400)
T COG3071 119 LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT---LAVELTRARLLLNRRDYPAARENVDQLLEM------TPRHPEV 189 (400)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch---HHHHHHHHHHHHhCCCchhHHHHHHHHHHh------CcCChHH
Confidence 3455558888999999999999999988865542 236677888999999999999999999888 7778888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------HHHcCC---cH--------------HHHHHHHHH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLEI-------------------SRQLND---KL--------------SEGRALYNL 146 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~l-------------------~~~~~d---~~--------------~~~~~~~~l 146 (609)
+.....+|...|++.+...+..+.-+- ..+..+ .. ....+...+
T Consensus 190 lrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~ 269 (400)
T COG3071 190 LRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAY 269 (400)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHH
Confidence 888999999999998887777543321 000000 00 012233344
Q ss_pred HHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10738 147 GNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQER 226 (609)
Q Consensus 147 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 226 (609)
+.-+...|+ +++|.+..+++++- ..|.. .+..++ ....+++..=++..++.
T Consensus 270 a~~li~l~~--------------------~~~A~~~i~~~Lk~---~~D~~----L~~~~~--~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 270 AERLIRLGD--------------------HDEAQEIIEDALKR---QWDPR----LCRLIP--RLRPGDPEPLIKAAEKW 320 (400)
T ss_pred HHHHHHcCC--------------------hHHHHHHHHHHHHh---ccChh----HHHHHh--hcCCCCchHHHHHHHHH
Confidence 555556666 78888877777654 22221 222222 22456777777777777
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 227 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH 306 (609)
Q Consensus 227 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 306 (609)
++..+.... .+..||.++.+.+.|.+|..+++.+++..+. +..+..+|.++.+.|+..+|....+++
T Consensus 321 l~~h~~~p~------L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-------~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 321 LKQHPEDPL------LLSTLGRLALKNKLWGKASEALEAALKLRPS-------ASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HHhCCCChh------HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-------hhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 665554443 8899999999999999999999999887665 667889999999999999999999999
Q ss_pred HHHHH
Q psy10738 307 LIIAQ 311 (609)
Q Consensus 307 l~~~~ 311 (609)
+....
T Consensus 388 L~~~~ 392 (400)
T COG3071 388 LLLTR 392 (400)
T ss_pred HHHhc
Confidence 85544
No 135
>KOG0553|consensus
Probab=98.78 E-value=6.5e-08 Score=92.06 Aligned_cols=122 Identities=26% Similarity=0.333 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHH
Q psy10738 98 GEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQ 177 (609)
Q Consensus 98 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 177 (609)
..++-+-.-|+-+...++|.+|+..|.+||++.+ ..+..|.+.+.+|..+|. |+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P------~nAVyycNRAAAy~~Lg~--------------------~~ 132 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDP------TNAVYYCNRAAAYSKLGE--------------------YE 132 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC------CcchHHHHHHHHHHHhcc--------------------hH
Confidence 3455666778888999999999999999999987 667788899999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHH
Q psy10738 178 EAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQ 257 (609)
Q Consensus 178 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 257 (609)
.|++-.+.++.+ .+....+|..||.+|+.+|++++|++.|++++++.+.... ...+|..+-..+++..
T Consensus 133 ~AVkDce~Al~i------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~------~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 133 DAVKDCESALSI------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNES------YKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHHhc------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHH------HHHHHHHHHHHhcCCC
Confidence 999999999998 7788899999999999999999999999999999877653 6677777777777666
No 136
>KOG4340|consensus
Probab=98.77 E-value=3e-06 Score=80.22 Aligned_cols=170 Identities=19% Similarity=0.128 Sum_probs=116.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH----------HHHHHc-
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDL----------TLARNM- 93 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al----------~~~~~~- 93 (609)
+.+.|.+|+...+|..|..+|++.-...|.... .....+..++..+.+..|+....... ++-..+
T Consensus 47 LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~q----YrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIk 122 (459)
T KOG4340|consen 47 LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQ----YRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIK 122 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH----HHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 344577888888888888888887777765322 23334445555555555554433221 111110
Q ss_pred ---CC------------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccc
Q psy10738 94 ---ED------------KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIG 158 (609)
Q Consensus 94 ---~d------------~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~ 158 (609)
+| ..+.+....+.|-+.++.|+|+.|++-|+.|++... .....-++++.+++..|+
T Consensus 123 Yse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG------yqpllAYniALaHy~~~q--- 193 (459)
T KOG4340|consen 123 YSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG------YQPLLAYNLALAHYSSRQ--- 193 (459)
T ss_pred cccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC------CCchhHHHHHHHHHhhhh---
Confidence 11 134577788999999999999999999999998765 445577899999999999
Q ss_pred cCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh------------------CCh-----HHHHHHHHHHHHHHHHcCC
Q psy10738 159 KVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI------------------NDT-----AAQGRACGNLGNTYYLLGN 215 (609)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------------------~~~-----~~~~~~~~~lg~~~~~~g~ 215 (609)
+..|+++..+.++..-+. +++ .....+++..+-++++.|+
T Consensus 194 -----------------yasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n 256 (459)
T KOG4340|consen 194 -----------------YASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRN 256 (459)
T ss_pred -----------------HHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhccc
Confidence 999999998877643221 111 2345677778889999999
Q ss_pred HHHHHHHHH
Q psy10738 216 FKQAIYYHQ 224 (609)
Q Consensus 216 ~~~A~~~~~ 224 (609)
++.|.+.+.
T Consensus 257 ~eAA~eaLt 265 (459)
T KOG4340|consen 257 YEAAQEALT 265 (459)
T ss_pred HHHHHHHhh
Confidence 999877654
No 137
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.77 E-value=2.1e-07 Score=85.19 Aligned_cols=130 Identities=18% Similarity=0.177 Sum_probs=96.6
Q ss_pred HhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q psy10738 33 CKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKV 112 (609)
Q Consensus 33 ~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~ 112 (609)
+-.+.|..+...+...++..+.+. .+.+++.+|.++...|++++|+..+++++.+.. ++...+.++.++|.++..
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~ 84 (168)
T CHL00033 10 FIDKTFTIVADILLRILPTTSGEK--EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTS 84 (168)
T ss_pred ccccccccchhhhhHhccCCchhH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHH
Confidence 344556777777766655444433 477899999999999999999999999998732 233456789999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-------HcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 113 MGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYH-------AKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 113 ~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
.|++++|+.++++++.+.+.. ...+.++|.++. ..|+ ++.|+..+.+
T Consensus 85 ~g~~~eA~~~~~~Al~~~~~~------~~~~~~la~i~~~~~~~~~~~g~--------------------~~~A~~~~~~ 138 (168)
T CHL00033 85 NGEHTKALEYYFQALERNPFL------PQALNNMAVICHYRGEQAIEQGD--------------------SEIAEAWFDQ 138 (168)
T ss_pred cCCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHHHHhhHHHHHccc--------------------HHHHHHHHHH
Confidence 999999999999999885532 344555555555 7777 7777777777
Q ss_pred HHHHHHHh
Q psy10738 186 NLALMKEI 193 (609)
Q Consensus 186 al~~~~~~ 193 (609)
++..+++.
T Consensus 139 a~~~~~~a 146 (168)
T CHL00033 139 AAEYWKQA 146 (168)
T ss_pred HHHHHHHH
Confidence 76665543
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.77 E-value=9.6e-08 Score=83.91 Aligned_cols=114 Identities=21% Similarity=0.172 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCC
Q psy10738 82 YHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVG 161 (609)
Q Consensus 82 ~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~ 161 (609)
.+++++.. .+....+...+|.++...|++++|+..+++++...+ ....++..+|.++...|+
T Consensus 5 ~~~~~l~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~la~~~~~~~~------ 66 (135)
T TIGR02552 5 TLKDLLGL------DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP------YNSRYWLGLAACCQMLKE------ 66 (135)
T ss_pred hHHHHHcC------ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHHHH------
Confidence 45556665 666678888999999999999999999988887654 456788899999999999
Q ss_pred CCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy10738 162 QQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREF 233 (609)
Q Consensus 162 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (609)
+++|+.++++++.+ .+.....+.++|.++...|++++|+.++++++++.+..
T Consensus 67 --------------~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 67 --------------YEEAIDAYALAAAL------DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred --------------HHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 99999999888876 23345678889999999999999999999988876644
No 139
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.77 E-value=1.5e-06 Score=82.01 Aligned_cols=194 Identities=18% Similarity=0.145 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~ 139 (609)
...++..|..++..|+|.+|+..|++.+...+. .+....+.+.+|.+++..|+++.|+..+++.+...|... ..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~---s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~---~~ 78 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPN---SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP---KA 78 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T---TH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc---ch
Confidence 567899999999999999999999998877443 566788999999999999999999999999998877543 56
Q ss_pred HHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHH
Q psy10738 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQA 219 (609)
Q Consensus 140 ~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 219 (609)
..+++.+|.+++......- ..........+|+..++..+..++...-. .+|
T Consensus 79 ~~A~Y~~g~~~~~~~~~~~---------~~~~D~~~~~~A~~~~~~li~~yP~S~y~--------------------~~A 129 (203)
T PF13525_consen 79 DYALYMLGLSYYKQIPGIL---------RSDRDQTSTRKAIEEFEELIKRYPNSEYA--------------------EEA 129 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTH--------------------HHH
T ss_pred hhHHHHHHHHHHHhCccch---------hcccChHHHHHHHHHHHHHHHHCcCchHH--------------------HHH
Confidence 7789999998877654000 00111222556777776666554432211 112
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 220 IYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA 299 (609)
Q Consensus 220 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 299 (609)
...+...... .+.--..+|..|...|.|..|+..++.+++..+.. .....++..++.+|..+|..+.|
T Consensus 130 ~~~l~~l~~~---------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t---~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 130 KKRLAELRNR---------LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDT---PAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHH---------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTS---HHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHH---------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCC---chHHHHHHHHHHHHHHhCChHHH
Confidence 1111111111 11122345555555666666666666666554432 23344555555666655555544
Q ss_pred H
Q psy10738 300 I 300 (609)
Q Consensus 300 ~ 300 (609)
.
T Consensus 198 ~ 198 (203)
T PF13525_consen 198 D 198 (203)
T ss_dssp H
T ss_pred H
Confidence 3
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.76 E-value=8.4e-07 Score=78.95 Aligned_cols=133 Identities=25% Similarity=0.253 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
..+..+......++...+...++..+...|+.+- ...+.+.+|.+++..|++++|...|+.++... .++.....+.
T Consensus 13 ~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~y-a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~~~a~ 88 (145)
T PF09976_consen 13 ALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPY-AALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHHHHHH
Confidence 3444555666799999999999999998887643 35578889999999999999999999988853 4456667889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
..+|.++...|++++|+..++. ..+......++..+|.+|...|+ +++|+..|
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~-------~~~~~~~~~~~~~~Gdi~~~~g~--------------------~~~A~~~y 141 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQ-------IPDEAFKALAAELLGDIYLAQGD--------------------YDEARAAY 141 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHh-------ccCcchHHHHHHHHHHHHHHCCC--------------------HHHHHHHH
Confidence 9999999999999999999865 22334567788899999999999 99999999
Q ss_pred HHHH
Q psy10738 184 EQNL 187 (609)
Q Consensus 184 ~~al 187 (609)
++++
T Consensus 142 ~~Al 145 (145)
T PF09976_consen 142 QKAL 145 (145)
T ss_pred HHhC
Confidence 9874
No 141
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.75 E-value=7.5e-08 Score=76.83 Aligned_cols=83 Identities=22% Similarity=0.416 Sum_probs=70.0
Q ss_pred cCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q psy10738 35 AGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG 114 (609)
Q Consensus 35 ~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g 114 (609)
.|+|+.|+.+++++++..|.++ ...+++.+|.+|+..|+|++|+.++++ ... .+......+.+|.++..+|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~------~~~~~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL------DPSNPDIHYLLARCLLKLG 72 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH------HHCHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC------CCCCHHHHHHHHHHHHHhC
Confidence 6899999999999999998654 244777899999999999999999999 555 4555778888899999999
Q ss_pred CHHHHHHHHHHH
Q psy10738 115 KYDEAMVCCKRH 126 (609)
Q Consensus 115 ~~~~A~~~~~~a 126 (609)
++++|+.+++++
T Consensus 73 ~y~eAi~~l~~~ 84 (84)
T PF12895_consen 73 KYEEAIKALEKA 84 (84)
T ss_dssp -HHHHHHHHHHH
T ss_pred CHHHHHHHHhcC
Confidence 999999999875
No 142
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.73 E-value=1.4e-06 Score=80.01 Aligned_cols=103 Identities=26% Similarity=0.342 Sum_probs=68.2
Q ss_pred CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhH
Q psy10738 94 EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVK 173 (609)
Q Consensus 94 ~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~ 173 (609)
...+..+.+++.+|..+...|++++|+.+|++++.+.+.. .....++.++|.++...|+
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~la~~~~~~g~------------------ 87 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP---NDRSYILYNMGIIYASNGE------------------ 87 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHcCC------------------
Confidence 3355667777778888877888888888888777765422 1234577777777777777
Q ss_pred HhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10738 174 VCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQE 225 (609)
Q Consensus 174 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 225 (609)
+++|+.++.+++.+. +.....+..+|.++...|+...+...+.+
T Consensus 88 --~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~ 131 (172)
T PRK02603 88 --HDKALEYYHQALELN------PKQPSALNNIAVIYHKRGEKAEEAGDQDE 131 (172)
T ss_pred --HHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHcCChHhHhhCHHH
Confidence 777777777777752 33345566667777776665555444433
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.73 E-value=1.3e-06 Score=77.75 Aligned_cols=123 Identities=20% Similarity=0.169 Sum_probs=98.4
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Q psy10738 212 LLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYT 291 (609)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 291 (609)
..++...+...+++.+. ..++......+.+.+|.+++..|++++|+..|+.++... .++.....+...||.++.
T Consensus 23 ~~~~~~~~~~~~~~l~~---~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~~~a~l~LA~~~~ 96 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAK---DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPELKPLARLRLARILL 96 (145)
T ss_pred HCCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHH
Confidence 46777777666665544 445555666788999999999999999999999988744 445556778889999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy10738 292 LLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHL 347 (609)
Q Consensus 292 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al 347 (609)
..|++++|+..++. ..+......++..+|.+|...|++++|+..|++|+
T Consensus 97 ~~~~~d~Al~~L~~-------~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 97 QQGQYDEALATLQQ-------IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HcCCHHHHHHHHHh-------ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999999855 23334456688899999999999999999999874
No 144
>KOG2047|consensus
Probab=98.73 E-value=3.6e-05 Score=80.26 Aligned_cols=287 Identities=12% Similarity=0.099 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH--------------------------------
Q psy10738 58 TLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN-------------------------------- 105 (609)
Q Consensus 58 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~-------------------------------- 105 (609)
..+..|..||..|...|.+++|...|++++...-...|-.....+|..
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 466788999999999999999999999998654333222211111110
Q ss_pred ---------------------------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccc
Q psy10738 106 ---------------------------LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIG 158 (609)
Q Consensus 106 ---------------------------lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~ 158 (609)
+-.+-...|+..+-+..|.+|+.......-.......+..+|..|...|+
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~--- 402 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD--- 402 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc---
Confidence 00111122334444555555544322211122345678889999999999
Q ss_pred cCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------
Q psy10738 159 KVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE------ 232 (609)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------ 232 (609)
.+.|...++++.+. ..+.....+.+|.+.|..-....+++.|+.+.+.|...-..
T Consensus 403 -----------------l~~aRvifeka~~V--~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~y 463 (835)
T KOG2047|consen 403 -----------------LDDARVIFEKATKV--PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYY 463 (835)
T ss_pred -----------------HHHHHHHHHHhhcC--CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhh
Confidence 99999999998875 22334556788999999999999999999999888643221
Q ss_pred -hCChH-----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 233 -FGDKA-----AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH 306 (609)
Q Consensus 233 -~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 306 (609)
.+.+. ....+|..++.+....|-++.....|++.+++--. .+....+.|..+....-+++|.+.|++.
T Consensus 464 d~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria------TPqii~NyAmfLEeh~yfeesFk~YErg 537 (835)
T KOG2047|consen 464 DNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA------TPQIIINYAMFLEEHKYFEESFKAYERG 537 (835)
T ss_pred cCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 01111 11346667777777788888888888888776543 2556677777777777788888888887
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCC
Q psy10738 307 LIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMST 377 (609)
Q Consensus 307 l~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~ 377 (609)
+.+++- .........|......-..--..+.|...|++|++... +......+...|.+-..-|.-.
T Consensus 538 I~LFk~-p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp----p~~aKtiyLlYA~lEEe~GLar 603 (835)
T KOG2047|consen 538 ISLFKW-PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP----PEHAKTIYLLYAKLEEEHGLAR 603 (835)
T ss_pred CccCCC-ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHhhHHH
Confidence 776642 22223333444333333334467778888888887442 2233444555555555555433
No 145
>KOG3060|consensus
Probab=98.72 E-value=8.8e-06 Score=75.65 Aligned_cols=198 Identities=20% Similarity=0.148 Sum_probs=122.1
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCcc--hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 31 RLCKAGDCRAGVAFFQAAIQAGTDD--LRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 31 ~~~~~g~~~~A~~~~~~al~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
.-+...+.++-++++.+.+...+.. ....-.+|-.+..+....|+.+-|..++++.... .|...++...-|.
T Consensus 21 r~~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~------fp~S~RV~~lkam 94 (289)
T KOG3060|consen 21 REETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR------FPGSKRVGKLKAM 94 (289)
T ss_pred HhccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh------CCCChhHHHHHHH
Confidence 4455556666666666666543211 1112335566666677777777777777776555 3445556666677
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHH
Q psy10738 109 TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLA 188 (609)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 188 (609)
.+...|++++|+++|+..++-.+ ....++-..-.+...+|+ --+|++.+.+.++
T Consensus 95 ~lEa~~~~~~A~e~y~~lL~ddp------t~~v~~KRKlAilka~GK--------------------~l~aIk~ln~YL~ 148 (289)
T KOG3060|consen 95 LLEATGNYKEAIEYYESLLEDDP------TDTVIRKRKLAILKAQGK--------------------NLEAIKELNEYLD 148 (289)
T ss_pred HHHHhhchhhHHHHHHHHhccCc------chhHHHHHHHHHHHHcCC--------------------cHHHHHHHHHHHH
Confidence 77777888888888777665332 233334444445556666 5567766666665
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Q psy10738 189 LMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG---EYQAASEHYKR 265 (609)
Q Consensus 189 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~ 265 (609)
.+ .....+|..++.+|...|+|++|.-++++.+-+.|...- .+..+|.+++.+| ++.-|.+||.+
T Consensus 149 ~F------~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l------~f~rlae~~Yt~gg~eN~~~arkyy~~ 216 (289)
T KOG3060|consen 149 KF------MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPL------YFQRLAEVLYTQGGAENLELARKYYER 216 (289)
T ss_pred Hh------cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHH------HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 53 223457777788888888888888888777766544322 4445555555554 56677778888
Q ss_pred HHHHHHH
Q psy10738 266 TLVLAQD 272 (609)
Q Consensus 266 al~~~~~ 272 (609)
++++.+.
T Consensus 217 alkl~~~ 223 (289)
T KOG3060|consen 217 ALKLNPK 223 (289)
T ss_pred HHHhChH
Confidence 8777763
No 146
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.72 E-value=4.9e-07 Score=82.73 Aligned_cols=113 Identities=22% Similarity=0.179 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc-h
Q psy10738 238 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD-R 316 (609)
Q Consensus 238 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~ 316 (609)
..+.+++.+|.++...|++++|+..|++++.+.+. +...+.++.++|.++...|++++|+.++++++.+.+.... .
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~ 109 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID---PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQAL 109 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 34557777888888888888888888888776432 2223557778888888888888888888888876544322 2
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHc
Q psy10738 317 VGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQL 353 (609)
Q Consensus 317 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~ 353 (609)
...+.++..+|..+..+|+++.|..++.+++..++..
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a 146 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA 146 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 2234445555555558888888888888888877655
No 147
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.72 E-value=5.7e-06 Score=80.04 Aligned_cols=188 Identities=12% Similarity=-0.062 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHH
Q psy10738 99 EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQE 178 (609)
Q Consensus 99 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 178 (609)
....++..|..+...|+|++|+..|++.+...+ .......+.+.+|.+|+..++ |++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP---~s~~a~~a~l~la~ayy~~~~--------------------y~~ 87 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP---FGPYSQQVQLDLIYAYYKNAD--------------------LPL 87 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHhcCC--------------------HHH
Confidence 345566677777777777777777777766554 334555566777777777777 777
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcC---------------CH---HHHHHHHHHHHHHHHHhCChHHHH
Q psy10738 179 AIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLG---------------NF---KQAIYYHQERLKIAREFGDKAAER 240 (609)
Q Consensus 179 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g---------------~~---~~A~~~~~~al~~~~~~~~~~~~~ 240 (609)
|+..+++.++..+. ++....+++.+|.++..++ +. .+|+..+++.++..|+. ...
T Consensus 88 A~~~~e~fi~~~P~---~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S---~ya- 160 (243)
T PRK10866 88 AQAAIDRFIRLNPT---HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS---QYT- 160 (243)
T ss_pred HHHHHHHHHHhCcC---CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC---hhH-
Confidence 77777777666443 3444566777776654433 22 34555555555544432 111
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHH
Q psy10738 241 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 320 (609)
Q Consensus 241 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 320 (609)
.+|...+...... .+.--..+|..|.+.|.|..|+.-++..+.-.+.. ....
T Consensus 161 ----------------~~A~~rl~~l~~~---------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t---~~~~ 212 (243)
T PRK10866 161 ----------------TDATKRLVFLKDR---------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDT---QATR 212 (243)
T ss_pred ----------------HHHHHHHHHHHHH---------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCC---chHH
Confidence 1222211111111 12333466777888888888777777766654443 3356
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Q psy10738 321 RACWSLGNAHAARGNHEKALYFAT 344 (609)
Q Consensus 321 ~~~~~La~~~~~~g~~~~A~~~~~ 344 (609)
.++..++..|..+|..++|..+..
T Consensus 213 eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 213 DALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Confidence 677888888888888887766543
No 148
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.70 E-value=1e-06 Score=80.86 Aligned_cols=109 Identities=19% Similarity=0.111 Sum_probs=84.2
Q ss_pred hCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 193 INDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD 272 (609)
Q Consensus 193 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 272 (609)
.......+.+++++|.++...|++++|+.+|++++.+.+... ....++.++|.++...|++++|+.++.+++.+.+.
T Consensus 28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN---DRSYILYNMGIIYASNGEHDKALEYYHQALELNPK 104 (172)
T ss_pred cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 345667788999999999999999999999999998765432 23458999999999999999999999999998665
Q ss_pred cCCcHHHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHH
Q psy10738 273 LGDRAVEAQACYSLGNTYTLLRD-------YPTAIDYHLRHLIIA 310 (609)
Q Consensus 273 ~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~ 310 (609)
. ...+..+|.++...|+ ++.|+..+.++++..
T Consensus 105 ~------~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~ 143 (172)
T PRK02603 105 Q------PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYW 143 (172)
T ss_pred c------HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHH
Confidence 3 5566677878777666 444444444444443
No 149
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.69 E-value=3.3e-07 Score=80.16 Aligned_cols=103 Identities=15% Similarity=0.054 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhH
Q psy10738 97 LGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCL 176 (609)
Q Consensus 97 ~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 176 (609)
+......+.+|..++..|++++|...|+-...+.+ .....+++||.++..+|+ |
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp------~~~~y~~gLG~~~Q~~g~--------------------~ 85 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDA------WSFDYWFRLGECCQAQKH--------------------W 85 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHHhh--------------------H
Confidence 45567778888888888888888888888877776 677788888888888888 8
Q ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 177 QEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAR 231 (609)
Q Consensus 177 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 231 (609)
.+|+..|..++.+ .+.....+.++|.+++..|+.+.|.+.|+.++..+.
T Consensus 86 ~~AI~aY~~A~~L------~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 86 GEAIYAYGRAAQI------KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHHhc------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 8888888888877 344556888888888888888888888888888773
No 150
>KOG1915|consensus
Probab=98.67 E-value=4.4e-05 Score=76.88 Aligned_cols=302 Identities=12% Similarity=-0.004 Sum_probs=156.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----------------H
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLAR----------------N 92 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----------------~ 92 (609)
+..-.+.|+..-|...|+.|++.-.++.. ...++...|..-..+.+++.|.-.|+-|++..+ +
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d~~-~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKq 292 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDDEE-AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQ 292 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH
Confidence 44445667778888888888776443322 222334444444455566666666555554322 1
Q ss_pred cCC----------------------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHH
Q psy10738 93 MED----------------------KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKL-SEGRALYNLGNV 149 (609)
Q Consensus 93 ~~d----------------------~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~-~~~~~~~~lg~~ 149 (609)
.|| .+....+++..-.+-...|+.+.-.+.|++|+.-.+...... ..-.+|..+-.+
T Consensus 293 fGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYa 372 (677)
T KOG1915|consen 293 FGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYA 372 (677)
T ss_pred hcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHH
Confidence 222 333455666666666777999999999999987666433222 222233333333
Q ss_pred HHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 150 YHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKI 229 (609)
Q Consensus 150 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 229 (609)
++.. -..++.+.+.+.|+.++++.+.. ....+.++...|.....+.+...|.+.+-.|+..
T Consensus 373 lyeE-----------------le~ed~ertr~vyq~~l~lIPHk--kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~ 433 (677)
T KOG1915|consen 373 LYEE-----------------LEAEDVERTRQVYQACLDLIPHK--KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK 433 (677)
T ss_pred HHHH-----------------HHhhhHHHHHHHHHHHHhhcCcc--cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc
Confidence 2221 11123888889999999876543 2334455555566555666666666665555554
Q ss_pred HHHhCC---------------------------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHH
Q psy10738 230 AREFGD---------------------------KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQA 282 (609)
Q Consensus 230 ~~~~~~---------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 282 (609)
+++..- .+....++...|.+-..+|+.+.|...|+-|+.... ...+. ..
T Consensus 434 cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~-ldmpe---ll 509 (677)
T KOG1915|consen 434 CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA-LDMPE---LL 509 (677)
T ss_pred CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc-cccHH---HH
Confidence 443221 011122444555555555555555555554443211 11111 11
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH-----HcC-----------ChHHHHHHHHHH
Q psy10738 283 CYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHA-----ARG-----------NHEKALYFATKH 346 (609)
Q Consensus 283 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~-----~~g-----------~~~~A~~~~~~a 346 (609)
+-..-..-...|.+++|...|++.+...+.. .++...|..-. ..| +...|...|++|
T Consensus 510 wkaYIdFEi~~~E~ekaR~LYerlL~rt~h~-------kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferA 582 (677)
T KOG1915|consen 510 WKAYIDFEIEEGEFEKARALYERLLDRTQHV-------KVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERA 582 (677)
T ss_pred HHHhhhhhhhcchHHHHHHHHHHHHHhcccc-------hHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHH
Confidence 1112223334555555555555555443322 13333333322 344 566777777777
Q ss_pred HHHHHHcCCCchHHH
Q psy10738 347 LEISKQLGDPLGQVT 361 (609)
Q Consensus 347 l~l~~~~~~~~~~~~ 361 (609)
....++.+.......
T Consensus 583 n~~~k~~~~KeeR~~ 597 (677)
T KOG1915|consen 583 NTYLKESTPKEERLM 597 (677)
T ss_pred HHHHHhcCcHHHHHH
Confidence 777777665443333
No 151
>KOG1915|consensus
Probab=98.66 E-value=2.8e-05 Score=78.26 Aligned_cols=271 Identities=8% Similarity=0.002 Sum_probs=169.2
Q ss_pred cCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q psy10738 35 AGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG 114 (609)
Q Consensus 35 ~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g 114 (609)
..+.+.|...|++-+-..|+ ...|...+..-...|+...|...|+.|++... +...........|..-..+.
T Consensus 187 ykeieraR~IYerfV~~HP~-----v~~wikyarFE~k~g~~~~aR~VyerAie~~~---~d~~~e~lfvaFA~fEe~qk 258 (677)
T KOG1915|consen 187 YKEIERARSIYERFVLVHPK-----VSNWIKYARFEEKHGNVALARSVYERAIEFLG---DDEEAEILFVAFAEFEERQK 258 (677)
T ss_pred hhHHHHHHHHHHHHheeccc-----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHH
Confidence 34555566666665555554 33566667777778888888888888887643 34444445555555555666
Q ss_pred CHHHHHHHHHHHHHHHHH----------------cCCcHHHH----------------------HHHHHHHHHHHHcccc
Q psy10738 115 KYDEAMVCCKRHLEISRQ----------------LNDKLSEG----------------------RALYNLGNVYHAKGKA 156 (609)
Q Consensus 115 ~~~~A~~~~~~al~l~~~----------------~~d~~~~~----------------------~~~~~lg~~~~~~g~~ 156 (609)
.++.|...|+-|++..+. .||..+.- .+++..-.+-...|+
T Consensus 259 E~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~- 337 (677)
T KOG1915|consen 259 EYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGD- 337 (677)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCC-
Confidence 677777777766654432 23322211 122222222223333
Q ss_pred cccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHH
Q psy10738 157 IGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIND-TAAQGRACGNLGNTY---YLLGNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~~---~~~g~~~~A~~~~~~al~~~~~ 232 (609)
-+.-.+.|++|+.-.+.... ....-.+|..+-.++ ....+.+.+.+.|+.++++.+.
T Consensus 338 -------------------~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH 398 (677)
T KOG1915|consen 338 -------------------KDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH 398 (677)
T ss_pred -------------------HHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc
Confidence 56666677777654332211 122222333333333 3468899999999999998876
Q ss_pred hCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 233 FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 233 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 312 (609)
..- ..+..+...|...+.+.+...|.+.+..|+-.+|+ .......-.+-.++++++.....|++.++..++
T Consensus 399 kkF--tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-------~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe 469 (677)
T KOG1915|consen 399 KKF--TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK-------DKLFKGYIELELQLREFDRCRKLYEKFLEFSPE 469 (677)
T ss_pred ccc--hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc-------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH
Confidence 443 33447777888888888888998888888887775 334444445666777888888888887776655
Q ss_pred hcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy10738 313 LMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLE 348 (609)
Q Consensus 313 ~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 348 (609)
...++...|.+-..+|+.+.|...|+-|+.
T Consensus 470 ------~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 470 ------NCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred ------hhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 345777777777778888887777776654
No 152
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.64 E-value=7.6e-05 Score=81.11 Aligned_cols=261 Identities=12% Similarity=-0.061 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc---CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM---EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLS 138 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~ 138 (609)
.....++.....+++.+|.....++....+.. ......+......|.+....|++++|+++.+.++...+..... .
T Consensus 417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~-~ 495 (894)
T COG2909 417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR-S 495 (894)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch-h
Confidence 34556777888899999999988887765542 2233456666777889999999999999999999887754433 4
Q ss_pred HHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHH
Q psy10738 139 EGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQ 218 (609)
Q Consensus 139 ~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 218 (609)
.+.++..+|.+..-.|+ +.+|..+...+.++++..+.......+....+.+...+|+...
T Consensus 496 r~~~~sv~~~a~~~~G~--------------------~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~ 555 (894)
T COG2909 496 RIVALSVLGEAAHIRGE--------------------LTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVAR 555 (894)
T ss_pred hhhhhhhhhHHHHHhch--------------------HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45688899999999999 9999999999999999998888888899999999999994333
Q ss_pred HHH--HHHHHHHH-HHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHhC
Q psy10738 219 AIY--YHQERLKI-AREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV-EAQACYSLGNTYTLLR 294 (609)
Q Consensus 219 A~~--~~~~al~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~la~~~~~~g 294 (609)
|.. .+...... .+..........++..+..++.. ++.+..-....+++......... ...+++.|+.++...|
T Consensus 556 a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~G 632 (894)
T COG2909 556 AEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRG 632 (894)
T ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcC
Confidence 322 22221111 11111111222334444444443 66666666666666554432222 2333468999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy10738 295 DYPTAIDYHLRHLIIAQQLM-DRVGEGRACWSLGNAHAARGNHEKALYFATKH 346 (609)
Q Consensus 295 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~a 346 (609)
++++|...+.+......... .....+.++.....+....||+.+|.....+.
T Consensus 633 dl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 633 DLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 99999999999888876653 34445556666666777889999998877763
No 153
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.63 E-value=7.4e-05 Score=81.20 Aligned_cols=322 Identities=14% Similarity=-0.023 Sum_probs=205.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
+.-+...|...+|+.+.-.| +|+...+.++.+.|.-.+..++..--..+.+.. -.. . -...+......++
T Consensus 354 a~w~~~~g~~~eAI~hAlaA-----~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~l-P~~-~---l~~~P~Lvll~aW 423 (894)
T COG2909 354 AEWFAEHGLPSEAIDHALAA-----GDPEMAADLLEQLEWQLFNGSELSLLLAWLKAL-PAE-L---LASTPRLVLLQAW 423 (894)
T ss_pred HHHHHhCCChHHHHHHHHhC-----CCHHHHHHHHHhhhhhhhcccchHHHHHHHHhC-CHH-H---HhhCchHHHHHHH
Confidence 44456678888888765443 466666667777777777776654433322211 000 0 1122344556678
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 109 TLKVMGKYDEAMVCCKRHLEISRQLN---DKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~l~~~~~---d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
......++.+|..+..++....+..+ .....+......|.+....|+ +++|+++.+.
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~--------------------~e~a~~lar~ 483 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGD--------------------PEEAEDLARL 483 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCC--------------------HHHHHHHHHH
Confidence 88889999999999998887766532 223455666677888889999 9999999999
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 186 NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR 265 (609)
Q Consensus 186 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 265 (609)
++........ ...+.++..+|.+..-.|++++|..+...+.++++..........+....+.++..+|+...|...-..
T Consensus 484 al~~L~~~~~-~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~ 562 (894)
T COG2909 484 ALVQLPEAAY-RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAF 562 (894)
T ss_pred HHHhcccccc-hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9987665433 334668889999999999999999999999999999998888888889999999999944333322222
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcch-hhHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy10738 266 TLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR-VGEGRACWSLGNAHAARGNHEKALYFAT 344 (609)
Q Consensus 266 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~La~~~~~~g~~~~A~~~~~ 344 (609)
.....................+.++...-+++.+..-..+.+.+....... ....-++..|+.++...|+.++|.....
T Consensus 563 ~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~ 642 (894)
T COG2909 563 NLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLD 642 (894)
T ss_pred HHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 221111111111111122222333333333677766666666655443322 2222334589999999999999999999
Q ss_pred HHHHHHHHcCCC-chHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 345 KHLEISKQLGDP-LGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 345 ~al~l~~~~~~~-~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
+...+....+.. .....+......+....|++..+-.
T Consensus 643 ~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~ 680 (894)
T COG2909 643 ELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAE 680 (894)
T ss_pred HHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHH
Confidence 998888766422 2223333333344445566554433
No 154
>KOG2047|consensus
Probab=98.63 E-value=4.8e-05 Score=79.35 Aligned_cols=304 Identities=11% Similarity=0.104 Sum_probs=175.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-----c-CChhh----
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARN-----M-EDKLG---- 98 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~-~d~~~---- 98 (609)
|..|...|+.+.|...|++|.+..-...+.++.+|...|..-....+++.|+.+.+.|...-.. . +..+.
T Consensus 394 aklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rl 473 (835)
T KOG2047|consen 394 AKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARL 473 (835)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHH
Confidence 6677777788888888888877765555556777777777777777777777777777654211 0 11111
Q ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhH
Q psy10738 99 --EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCL 176 (609)
Q Consensus 99 --~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 176 (609)
...+|...+......|-++.....|++.+++-- ....+..|.|..+....- +
T Consensus 474 hrSlkiWs~y~DleEs~gtfestk~vYdriidLri------aTPqii~NyAmfLEeh~y--------------------f 527 (835)
T KOG2047|consen 474 HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI------ATPQIIINYAMFLEEHKY--------------------F 527 (835)
T ss_pred HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhHH--------------------H
Confidence 234445555555666666666666776666543 334455566666666555 7
Q ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCH
Q psy10738 177 QEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEY 256 (609)
Q Consensus 177 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 256 (609)
++|.+.|++.+.+++-- .....-..|.....--+.--..+.|...|++|++.++. ...-..|...|..-..-|-.
T Consensus 528 eesFk~YErgI~LFk~p-~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp----~~aKtiyLlYA~lEEe~GLa 602 (835)
T KOG2047|consen 528 EESFKAYERGISLFKWP-NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP----EHAKTIYLLYAKLEEEHGLA 602 (835)
T ss_pred HHHHHHHHcCCccCCCc-cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHhhHH
Confidence 77777777777765421 11222223333333333444678888888888886552 22223555566666666777
Q ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCCh
Q psy10738 257 QAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNH 336 (609)
Q Consensus 257 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~ 336 (609)
..|+..|++|-.-.+.. +......+|. ..+....| ...-...|++|++..++.. ....+...|..-..+|..
T Consensus 603 r~amsiyerat~~v~~a-~~l~myni~I--~kaae~yG-v~~TR~iYekaIe~Lp~~~----~r~mclrFAdlEtklGEi 674 (835)
T KOG2047|consen 603 RHAMSIYERATSAVKEA-QRLDMYNIYI--KKAAEIYG-VPRTREIYEKAIESLPDSK----AREMCLRFADLETKLGEI 674 (835)
T ss_pred HHHHHHHHHHHhcCCHH-HHHHHHHHHH--HHHHHHhC-CcccHHHHHHHHHhCChHH----HHHHHHHHHHHhhhhhhH
Confidence 77777777754432211 0001111111 11111112 2234566777777654422 334667788888999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCC
Q psy10738 337 EKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGM 375 (609)
Q Consensus 337 ~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~ 375 (609)
+.|...|.-+-++. ++.....-+...-+.-.+-|+
T Consensus 675 dRARaIya~~sq~~----dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 675 DRARAIYAHGSQIC----DPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHHHhhhhcC----CCcCChHHHHHHHHHHHhcCC
Confidence 99988877666554 444444444444444455555
No 155
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=3.2e-06 Score=85.71 Aligned_cols=112 Identities=21% Similarity=0.187 Sum_probs=67.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLG 107 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg 107 (609)
.+..++..|++++|...+...+...|+++ ..+...+.++...++..+|.+.+++++.+ .|.......++|
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~P~N~----~~~~~~~~i~~~~nk~~~A~e~~~kal~l------~P~~~~l~~~~a 381 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQPDNP----YYLELAGDILLEANKAKEAIERLKKALAL------DPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCccHHHHHHH
Confidence 35555666666666666666666666553 24455566666666666666666666666 555555666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccc
Q psy10738 108 NTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK 155 (609)
Q Consensus 108 ~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~ 155 (609)
++|...|++.+|+..++..+.-.+ .....|..||..|..+|+
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p------~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDP------EDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCC------CCchHHHHHHHHHHHhCc
Confidence 666666666666666555444333 344456666666666665
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.55 E-value=6.9e-07 Score=91.86 Aligned_cols=96 Identities=18% Similarity=0.215 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHH
Q psy10738 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRA 142 (609)
Q Consensus 63 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~ 142 (609)
+...|..++..|+|++|+.+|.+++.+ .+....++.++|.+|...|++++|+..+++++.+.+ ....+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P------~~~~a 72 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL------DPNNAELYADRAQANIKLGNFTEAVADANKAIELDP------SLAKA 72 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------CCHHH
Confidence 456788999999999999999999998 777889999999999999999999999999999877 56778
Q ss_pred HHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH
Q psy10738 143 LYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 143 ~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 190 (609)
++.+|.+|...|+ |++|+.+|++++.+.
T Consensus 73 ~~~lg~~~~~lg~--------------------~~eA~~~~~~al~l~ 100 (356)
T PLN03088 73 YLRKGTACMKLEE--------------------YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHhCC--------------------HHHHHHHHHHHHHhC
Confidence 9999999999999 999999999999873
No 157
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.54 E-value=3.2e-07 Score=70.03 Aligned_cols=65 Identities=29% Similarity=0.577 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG-KYDEAMVCCKRHLEIS 130 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~ 130 (609)
+.+|..+|.+++..|++++|+.+|.+++++ .+..+.+++++|.++..+| ++.+|+.++++++++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 568999999999999999999999999999 8888999999999999999 7999999999999874
No 158
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=1.4e-05 Score=72.37 Aligned_cols=242 Identities=17% Similarity=0.053 Sum_probs=156.2
Q ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHH
Q psy10738 42 VAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121 (609)
Q Consensus 42 ~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~ 121 (609)
+.-+.+.+....-.++..+..++..|..|-..|-+.-|.-.|.+++.+ .|..+.+++.+|..+...|+|+.|.+
T Consensus 47 iarlsqlL~~~~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai------~P~m~~vfNyLG~Yl~~a~~fdaa~e 120 (297)
T COG4785 47 LARMSQILASRALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAI------RPDMPEVFNYLGIYLTQAGNFDAAYE 120 (297)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc------CCCcHHHHHHHHHHHHhcccchHHHH
Confidence 344555555555455667889999999999999999999999999999 88899999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhC-ChHHHH
Q psy10738 122 CCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIN-DTAAQG 200 (609)
Q Consensus 122 ~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~ 200 (609)
.|...+++.+ ..-.+..|.|..++.-|+ |.-|.+-+.+- ....+ |+....
T Consensus 121 aFds~~ELDp------~y~Ya~lNRgi~~YY~gR--------------------~~LAq~d~~~f---YQ~D~~DPfR~L 171 (297)
T COG4785 121 AFDSVLELDP------TYNYAHLNRGIALYYGGR--------------------YKLAQDDLLAF---YQDDPNDPFRSL 171 (297)
T ss_pred HhhhHhccCC------cchHHHhccceeeeecCc--------------------hHhhHHHHHHH---HhcCCCChHHHH
Confidence 9999999887 555688899999999999 88887766543 33332 332222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-CcHH
Q psy10738 201 RACGNLGNTYYLLGNFKQAIYYHQERLKIAREFG-DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG-DRAV 278 (609)
Q Consensus 201 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~ 278 (609)
+.|.+ ...-+..+|...+.+..+ ... +.+....+-+.+|.+-. ...++++..-+.+.. -...
T Consensus 172 WLYl~-----E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~--------e~l~~~~~a~a~~n~~~Ae~ 235 (297)
T COG4785 172 WLYLN-----EQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISE--------ETLMERLKADATDNTSLAEH 235 (297)
T ss_pred HHHHH-----HhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccH--------HHHHHHHHhhccchHHHHHH
Confidence 32222 123356666655543222 211 11111122223332211 122333333222110 1123
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCCh
Q psy10738 279 EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNH 336 (609)
Q Consensus 279 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~ 336 (609)
...+++.+|..|...|+.++|...|+-++.. ..-+-.....+...|+.++....+.
T Consensus 236 LTEtyFYL~K~~l~~G~~~~A~~LfKLaian--nVynfVE~RyA~~EL~~l~q~~~~l 291 (297)
T COG4785 236 LTETYFYLGKYYLSLGDLDEATALFKLAVAN--NVYNFVEHRYALLELSLLGQDQDDL 291 (297)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHhccccchh
Confidence 4678899999999999999999999876643 3333334444566666665554433
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.52 E-value=1.4e-06 Score=74.26 Aligned_cols=103 Identities=18% Similarity=0.174 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
++..|..+...|++++|+..|.+++...|+++. ...+++.+|.++...|+++.|+.+++.++.... +.+....++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~~~ 80 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY-APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP---KSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC---CCCcccHHHH
Confidence 456789999999999999999999999887543 245788999999999999999999999988632 2233467899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
.+|.++...|++++|+.++.++++..+
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 999999999999999999999998866
No 160
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=3.7e-05 Score=78.20 Aligned_cols=152 Identities=18% Similarity=0.132 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHH
Q psy10738 138 SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFK 217 (609)
Q Consensus 138 ~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 217 (609)
....+.+..+..++..|+ ++.|+..+...+.. .+...+.+...+.++...|+..
T Consensus 304 ~~~aa~YG~A~~~~~~~~--------------------~d~A~~~l~~L~~~------~P~N~~~~~~~~~i~~~~nk~~ 357 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQ--------------------YDEALKLLQPLIAA------QPDNPYYLELAGDILLEANKAK 357 (484)
T ss_pred cchHHHHHHHHHHHHhcc--------------------cchHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChH
Confidence 445578888889999999 99999888874443 3344567777899999999999
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHH
Q psy10738 218 QAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP 297 (609)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 297 (609)
+|.+.+++++...+... ....++|.+|+..|++.+|+..++..+.-.++ .+..|..||..|..+|+..
T Consensus 358 ~A~e~~~kal~l~P~~~------~l~~~~a~all~~g~~~eai~~L~~~~~~~p~------dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 358 EAIERLKKALALDPNSP------LLQLNLAQALLKGGKPQEAIRILNRYLFNDPE------DPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHHHHHHHhcCCCcc------HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC------CchHHHHHHHHHHHhCchH
Confidence 99999999988766543 37788999999999999999988887765554 3678888999999999877
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 298 TAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 298 ~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
+|.. ..++.|...|++++|+.++..+.+..
T Consensus 426 ~a~~-----------------------A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 426 EALL-----------------------ARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHH-----------------------HHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 6643 34556677889999998888887755
No 161
>KOG2471|consensus
Probab=98.51 E-value=1.4e-05 Score=80.62 Aligned_cols=125 Identities=14% Similarity=0.170 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH-HHhCCc---chhH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHHcCC-
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAA-IQAGTD---DLRT-LSAIYSQLGNAYFYLGDYQKAMQYHKQDLT-LARNMED- 95 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~a-l~~~~~---~~~~-~a~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~~d- 95 (609)
..+++++...|..|+|.+|.+.+... +...+. .+.. ....++++|.+++..|.|.-+..+|.+|+. ...+...
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g 320 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG 320 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 35677899999999999999987654 222222 2221 233568999999999999999999999995 3333211
Q ss_pred ----------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Q psy10738 96 ----------KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAK 153 (609)
Q Consensus 96 ----------~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~ 153 (609)
......++++.|..|...|+.-.|.+||.++...+. ...+.|..++.+....
T Consensus 321 ~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh------~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 321 LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH------RNPRLWLRLAECCIMA 382 (696)
T ss_pred CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence 123467899999999999999999999999999988 5567888888877654
No 162
>KOG1463|consensus
Probab=98.49 E-value=0.00027 Score=68.47 Aligned_cols=298 Identities=14% Similarity=0.103 Sum_probs=205.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHh--CC----cchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQA--GT----DDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGE 99 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~--~~----~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~ 99 (609)
...+.......++++++..|...+.. .+ ......-.....+|..|...|++.+-.......-.....++. ...
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~K-aka 86 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSK-AKA 86 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhh-HHH
Confidence 34566677778889999999999984 22 222334456788999999999998877777666655544432 223
Q ss_pred HHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHH
Q psy10738 100 AKSSGNLGN-TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQE 178 (609)
Q Consensus 100 ~~a~~~lg~-~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 178 (609)
+.....+-. +...-+..+.-+..+..+++-+...+.....-..-..+..+|+..++ |.+
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~--------------------Yte 146 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKR--------------------YTE 146 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHH--------------------HHH
Confidence 333333333 33334566777888888888777555444455566678899999999 999
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHhCCHH
Q psy10738 179 AIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREF-GDKAAERRANSNLGNSHIFLGEYQ 257 (609)
Q Consensus 179 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~ 257 (609)
|+......+.-.++..|......++..-..+|+.+.+..+|...+..|...+... ..+...+..-..-|.++..-.+|.
T Consensus 147 AlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDyk 226 (411)
T KOG1463|consen 147 ALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYK 226 (411)
T ss_pred HHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccc
Confidence 9999999999999999999999999999999999999999999888877665543 334444555566677888889999
Q ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH--cCC
Q psy10738 258 AASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAA--RGN 335 (609)
Q Consensus 258 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~--~g~ 335 (609)
.|..||-+|.+-+...+++.....++-.+-.+-...+..++--..+.--..+. ... ....+....|.++.. +.+
T Consensus 227 TafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~--y~g--~~i~AmkavAeA~~nRSLkd 302 (411)
T KOG1463|consen 227 TAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK--YAG--RDIDAMKAVAEAFGNRSLKD 302 (411)
T ss_pred hHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh--ccC--cchHHHHHHHHHhcCCcHHH
Confidence 99999999999888877764444444444445555666665444433222111 111 134466666766653 346
Q ss_pred hHHHHHHHHHHHH
Q psy10738 336 HEKALYFATKHLE 348 (609)
Q Consensus 336 ~~~A~~~~~~al~ 348 (609)
|+.|+.-|+.-+.
T Consensus 303 F~~AL~~yk~eL~ 315 (411)
T KOG1463|consen 303 FEKALADYKKELA 315 (411)
T ss_pred HHHHHHHhHHHHh
Confidence 6677766665443
No 163
>KOG1464|consensus
Probab=98.48 E-value=2e-05 Score=73.81 Aligned_cols=241 Identities=15% Similarity=0.102 Sum_probs=176.0
Q ss_pred hcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q psy10738 34 KAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVM 113 (609)
Q Consensus 34 ~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~ 113 (609)
+..+.++|+.-|++++++.++..++--.++-.+..+++.+|+|++-++.|.+.+...+..-.....-.+...+-..-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34589999999999999988766666678889999999999999999999999988764321111122222333333344
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh
Q psy10738 114 GKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI 193 (609)
Q Consensus 114 g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 193 (609)
.+.+--.++|+..++..+...+.......-..+|.+|+..|+ |.+-.+.+++.-.-++.-
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e--------------------~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGE--------------------YTKLQKILKQLHQSCQTE 178 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHH--------------------HHHHHHHHHHHHHHhccc
Confidence 556666778888888777776666666777789999999999 877776666654444322
Q ss_pred C------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy10738 194 N------DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTL 267 (609)
Q Consensus 194 ~------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 267 (609)
. .......+|..--..|..+.+-.+-...|++++.+-...+.+.....+.-.=|..++..|+|++|-.-|-+|.
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 1 1123345666666778888888888889999999887777777666677777888999999999999998888
Q ss_pred HHHHHcCCcHH-HHHHHHHHHHHHHHhC
Q psy10738 268 VLAQDLGDRAV-EAQACYSLGNTYTLLR 294 (609)
Q Consensus 268 ~~~~~~~~~~~-~~~~~~~la~~~~~~g 294 (609)
+-..+.+.+.. ...-|..||+.+.+.|
T Consensus 259 KNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 259 KNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred hcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 88777765543 3445667788877765
No 164
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.46 E-value=1.2e-06 Score=70.49 Aligned_cols=96 Identities=30% Similarity=0.517 Sum_probs=83.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
+...|..++..|++++|+..++++++..|.+. .++..+|.++...|++++|+.++++++.. .+....++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~ 72 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA----DAYYNLAAAYYKLGKYEEALEDYEKALEL------DPDNAKAYY 72 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCcchhHHH
Confidence 34568889999999999999999999988764 47889999999999999999999999887 344447889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLEIS 130 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~l~ 130 (609)
.+|.++...|++++|..++.+++...
T Consensus 73 ~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 73 NLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 99999999999999999999887653
No 165
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.42 E-value=2.7e-06 Score=82.96 Aligned_cols=104 Identities=13% Similarity=0.045 Sum_probs=89.0
Q ss_pred HHHHHHHH-HhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 25 LALEGERL-CKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 25 l~~~g~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.+..|..+ +..|+|++|+..|+..++..|++.. ...+++++|.+|+..|++++|+..|++++...+ +.+....++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~-a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP---~s~~~~dAl 220 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY-QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP---KSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCcchhHHH
Confidence 34456655 5679999999999999999998643 356899999999999999999999999887743 456678999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQ 132 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 132 (609)
+.+|.++..+|++++|...|+++++.++.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999887763
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.41 E-value=6.3e-06 Score=88.36 Aligned_cols=143 Identities=18% Similarity=0.152 Sum_probs=105.9
Q ss_pred cchhHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHH----HHHHHHHHHHHH
Q psy10738 17 DGGNMCLELALEGERLCKAGD---CRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQ----KAMQYHKQDLTL 89 (609)
Q Consensus 17 ~~a~~~~~l~~~g~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~----~A~~~~~~al~~ 89 (609)
......|.++++|..+...++ +..|+.+|++|++++|+... ++..++.+|.....+. ..+....++...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~----a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTY----AQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 345578999999999887766 88999999999999999844 5555555554432221 122222222222
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCc
Q psy10738 90 ARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYP 169 (609)
Q Consensus 90 ~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~ 169 (609)
+......+..+.++..+|..+...|++++|...+++|+.+.+ . ..+|..+|.++...|+
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p------s-~~a~~~lG~~~~~~G~-------------- 468 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM------S-WLNYVLLGKVYELKGD-------------- 468 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------C-HHHHHHHHHHHHHcCC--------------
Confidence 222222333457888889999999999999999999999874 2 4699999999999999
Q ss_pred hHhHHhHHHHHHHHHHHHHHH
Q psy10738 170 EEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 170 ~~~~~~~~~A~~~~~~al~~~ 190 (609)
+++|++.|++|+.+.
T Consensus 469 ------~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 469 ------NRLAADAYSTAFNLR 483 (517)
T ss_pred ------HHHHHHHHHHHHhcC
Confidence 999999999999874
No 167
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=0.00036 Score=66.07 Aligned_cols=228 Identities=14% Similarity=0.046 Sum_probs=168.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCC----cchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGT----DDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.|..+.+.+++++|+..|.+.+..+. .-....-.....++.+|...|++..--+.....-+....... +....+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk-~k~~Kii 87 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK-PKITKII 87 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc-hhHHHHH
Confidence 47778899999999999999998632 112233456788999999999988776666666555444432 2233333
Q ss_pred HHHHH-HHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHH
Q psy10738 104 GNLGN-TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182 (609)
Q Consensus 104 ~~lg~-~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 182 (609)
..+-. .-.....++.-+..+...++.+.+.+........-..+..+++..|. |.+|+..
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~--------------------Ysdalal 147 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGK--------------------YSDALAL 147 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------------------HHHHHHH
Confidence 33322 22334667888888888888776554444445556678889999999 9999999
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHhCCHHHHHH
Q psy10738 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD-KAAERRANSNLGNSHIFLGEYQAASE 261 (609)
Q Consensus 183 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~ 261 (609)
..-.+.-+++..|.+.....+..-..+|....+..++...+..|...+...-- +...+..-..-|..+..-.+|..|..
T Consensus 148 In~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~S 227 (421)
T COG5159 148 INPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASS 227 (421)
T ss_pred HHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHH
Confidence 99999999999999999999999999999999999999988888776665333 33344555555777788889999999
Q ss_pred HHHHHHHHHHHcCCc
Q psy10738 262 HYKRTLVLAQDLGDR 276 (609)
Q Consensus 262 ~~~~al~~~~~~~~~ 276 (609)
||-++++-+......
T Consensus 228 YF~Ea~Egft~l~~d 242 (421)
T COG5159 228 YFIEALEGFTLLKMD 242 (421)
T ss_pred HHHHHHhccccccch
Confidence 999999877665443
No 168
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.38 E-value=0.00018 Score=68.23 Aligned_cols=232 Identities=26% Similarity=0.337 Sum_probs=168.2
Q ss_pred cCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q psy10738 35 AGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG 114 (609)
Q Consensus 35 ~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g 114 (609)
.+.+..+...+..++...+.. .....+...+..+...+.+..+...+...+.. .........+...|..+...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 109 (291)
T COG0457 36 LGELAEALELLEEALELLPNS--DLAGLLLLLALALLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLLEALG 109 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccc--cchHHHHHHHHHHHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHHHHHh
Confidence 467777778888877766542 11346777888888999999999988888763 115566778888899999999
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh
Q psy10738 115 KYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN-VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI 193 (609)
Q Consensus 115 ~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 193 (609)
++..++..+.+++...... .......+. ++...|+ ++.|...+.+++.....
T Consensus 110 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--------------------~~~a~~~~~~~~~~~~~- 162 (291)
T COG0457 110 KYEEALELLEKALALDPDP------DLAEALLALGALYELGD--------------------YEEALELYEKALELDPE- 162 (291)
T ss_pred hHHHHHHHHHHHHcCCCCc------chHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhcCCC-
Confidence 9999999888887754422 122233333 7888888 99999999988542110
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q psy10738 194 NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL 273 (609)
Q Consensus 194 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 273 (609)
.......+...+..+...++++.|+..+.+++...+.. ....+..++..+...+++..|...+..++...+.
T Consensus 163 --~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~- 234 (291)
T COG0457 163 --LNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-----DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD- 234 (291)
T ss_pred --ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-----chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-
Confidence 12344556666666888889999999999988877663 2237788888888888999999999888887765
Q ss_pred CCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 274 GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 274 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 312 (609)
....+..++..+...+.++++...+.+++...+.
T Consensus 235 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 235 -----NAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred -----cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 2445666677777777788888888888776554
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.38 E-value=3.3e-06 Score=67.27 Aligned_cols=83 Identities=29% Similarity=0.390 Sum_probs=67.1
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 73 LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHA 152 (609)
Q Consensus 73 ~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~ 152 (609)
.|+|+.|+.+++++++..+. .+ ....++.+|.+|+..|+|++|+.++++ ....+ ....+.+.+|.++..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~---~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~------~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT---NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP------SNPDIHYLLARCLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG---TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH------CHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC---Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC------CCHHHHHHHHHHHHH
Confidence 68999999999999998332 11 566788899999999999999999998 54444 345677788999999
Q ss_pred cccccccCCCCCCCCCchHhHHhHHHHHHHHHHH
Q psy10738 153 KGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQN 186 (609)
Q Consensus 153 ~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 186 (609)
+|+ |++|+..++++
T Consensus 71 l~~--------------------y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGK--------------------YEEAIKALEKA 84 (84)
T ss_dssp TT---------------------HHHHHHHHHHH
T ss_pred hCC--------------------HHHHHHHHhcC
Confidence 999 99999999875
No 170
>KOG3616|consensus
Probab=98.37 E-value=0.00037 Score=73.65 Aligned_cols=288 Identities=16% Similarity=0.169 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH------HHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQD------LTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEI---- 129 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---- 129 (609)
...|-.-|.+|-...++++|+++|++. +++++- .-+......--..|..+...|+++.|+.+|-++-.+
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarf-afp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kai 739 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARF-AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAI 739 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh-hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHH
Confidence 456677788888899999999998764 444332 223344455556688888889999998887654332
Q ss_pred ---------------HHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhC
Q psy10738 130 ---------------SRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIN 194 (609)
Q Consensus 130 ---------------~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 194 (609)
...+.|.......|-.++.-|...|++..++.....++...++...|.++-+ ++.+.++..+..
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~k-w~da~kla~e~~ 818 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGK-WEDAFKLAEECH 818 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhcccc-HHHHHHHHHHhc
Confidence 2223333333334556677777777722111111111222222222222211 122344444444
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHhCChH------------HHHHHHHHHHHHHHHhCCH
Q psy10738 195 DTAAQGRACGNLGNTYYLLGNFKQAIYYH------QERLKIAREFGDKA------------AERRANSNLGNSHIFLGEY 256 (609)
Q Consensus 195 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~------------~~~~~~~~la~~~~~~g~~ 256 (609)
.+......|...+.-.-..|+|.+|...| .+++.++.+.+-.. ........+|.-|...|+.
T Consensus 819 ~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~l 898 (1636)
T KOG3616|consen 819 GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDL 898 (1636)
T ss_pred CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccCh
Confidence 45556667777777777888888877665 45566655543221 2233566777778888888
Q ss_pred HHHHHHHHHHHHH-------------------HHHcCCcHHHHHHHHH---------HHHHHHHhCCHHHHHHHHH----
Q psy10738 257 QAASEHYKRTLVL-------------------AQDLGDRAVEAQACYS---------LGNTYTLLRDYPTAIDYHL---- 304 (609)
Q Consensus 257 ~~A~~~~~~al~~-------------------~~~~~~~~~~~~~~~~---------la~~~~~~g~~~~A~~~~~---- 304 (609)
..|...|.++-+. ++..+.....-.+.+. -..++-+.|-.+.|+.+.-
T Consensus 899 kaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~a 978 (1636)
T KOG3616|consen 899 KAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCA 978 (1636)
T ss_pred hHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccc
Confidence 8887776554332 2211111111111111 0112233444455544322
Q ss_pred --HHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 305 --RHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 305 --~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
-+..+++ ++.......++..++..+...|++++|-.+|-+++.+.
T Consensus 979 fd~afdlar-i~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 979 FDFAFDLAR-IAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hhhHHHHHH-HhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 1222221 22233445678889999999999999999999888753
No 171
>KOG0543|consensus
Probab=98.37 E-value=3.4e-06 Score=83.91 Aligned_cols=116 Identities=21% Similarity=0.210 Sum_probs=95.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCC----cc-------hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCh
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGT----DD-------LRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDK 96 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~----~~-------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~ 96 (609)
.|..+++.|+|..|...|++|+..-. .+ ......++.+++.+|..+++|..|+.++.++|.+ .
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~------~ 287 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL------D 287 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc------C
Confidence 49999999999999999999988532 11 1234568899999999999999999999999999 8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccc
Q psy10738 97 LGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK 155 (609)
Q Consensus 97 ~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~ 155 (609)
+....+++..|.++..+|+|+.|+..|++++++.|.. -.+...|..+.....+
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N------ka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN------KAARAELIKLKQKIRE 340 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998832 3344445444444333
No 172
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.36 E-value=7.2e-07 Score=88.49 Aligned_cols=253 Identities=13% Similarity=0.030 Sum_probs=156.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLG 107 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg 107 (609)
....++..|+|..++.-++ ....++ .........+.++|..+|+++..+.-... . ......+...++
T Consensus 7 ~vrn~fy~G~Y~~~i~e~~-~~~~~~---~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~-------~--~~~~l~av~~la 73 (290)
T PF04733_consen 7 TVRNQFYLGNYQQCINEAS-LKSFSP---ENKLERDFYQYRSYIALGQYDSVLSEIKK-------S--SSPELQAVRLLA 73 (290)
T ss_dssp HHHHHHCTT-HHHHCHHHH-CHTSTC---HHHHHHHHHHHHHHHHTT-HHHHHHHS-T-------T--SSCCCHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhh-ccCCCc---hhHHHHHHHHHHHHHHcCChhHHHHHhcc-------C--CChhHHHHHHHH
Confidence 3567788999999998777 222222 23355677788899999998766543211 1 122234455556
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 108 NTLKVMGKYDEAMVCCKRHLEISRQLNDKL--SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 108 ~~~~~~g~~~~A~~~~~~al~l~~~~~d~~--~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
..+...++-+.++.-++..+ .+.. .........|.++...|+ +++|+..+.+
T Consensus 74 ~y~~~~~~~e~~l~~l~~~~------~~~~~~~~~~~~~~~A~i~~~~~~--------------------~~~AL~~l~~ 127 (290)
T PF04733_consen 74 EYLSSPSDKESALEELKELL------ADQAGESNEIVQLLAATILFHEGD--------------------YEEALKLLHK 127 (290)
T ss_dssp HHHCTSTTHHCHHHHHHHCC------CTS---CHHHHHHHHHHHHCCCCH--------------------HHHHHCCCTT
T ss_pred HHHhCccchHHHHHHHHHHH------HhccccccHHHHHHHHHHHHHcCC--------------------HHHHHHHHHc
Confidence 55554444444444333221 1111 123455667788888898 9999887765
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC--CHHHHHHHH
Q psy10738 186 NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG--EYQAASEHY 263 (609)
Q Consensus 186 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~ 263 (609)
. +. ..+......+|..+++++.|.+.++...++ .+.... +....+++.+..| .+.+|...|
T Consensus 128 ~-------~~----lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~eD~~l--~qLa~awv~l~~g~e~~~~A~y~f 190 (290)
T PF04733_consen 128 G-------GS----LELLALAVQILLKMNRPDLAEKELKNMQQI----DEDSIL--TQLAEAWVNLATGGEKYQDAFYIF 190 (290)
T ss_dssp T-------TC----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC----SCCHHH--HHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred c-------Cc----ccHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCcHHH--HHHHHHHHHHHhCchhHHHHHHHH
Confidence 3 11 234455677899999999999888775433 332222 2233334444455 688999999
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCCh-HHHHHH
Q psy10738 264 KRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNH-EKALYF 342 (609)
Q Consensus 264 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~-~~A~~~ 342 (609)
++..+.... ....+..+|.++..+|+|++|...+.+++... .....++.+++.+...+|+. +.+.++
T Consensus 191 ~El~~~~~~------t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~------~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 191 EELSDKFGS------TPKLLNGLAVCHLQLGHYEEAEELLEEALEKD------PNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp HHHHCCS--------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-------CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHhccCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc------cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 885443322 35678899999999999999999999987533 23466888999999999998 555556
Q ss_pred HHHHHH
Q psy10738 343 ATKHLE 348 (609)
Q Consensus 343 ~~~al~ 348 (609)
..+...
T Consensus 259 l~qL~~ 264 (290)
T PF04733_consen 259 LSQLKQ 264 (290)
T ss_dssp HHHCHH
T ss_pred HHHHHH
Confidence 555433
No 173
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.36 E-value=2.6e-06 Score=68.52 Aligned_cols=96 Identities=38% Similarity=0.629 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~ 141 (609)
+++.+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++...+. ...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~ 69 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD------NAK 69 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc------chh
Confidence 5788999999999999999999999887 4444578999999999999999999999999887652 236
Q ss_pred HHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 142 ~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
++..+|.++...|+ +++|..++.+++..
T Consensus 70 ~~~~~~~~~~~~~~--------------------~~~a~~~~~~~~~~ 97 (100)
T cd00189 70 AYYNLGLAYYKLGK--------------------YEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHHHHh--------------------HHHHHHHHHHHHcc
Confidence 88899999999999 99999999887764
No 174
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.35 E-value=5.8e-06 Score=70.47 Aligned_cols=104 Identities=19% Similarity=0.164 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHH
Q psy10738 61 AIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEG 140 (609)
Q Consensus 61 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~ 140 (609)
.+++.+|..+...|++++|+..+.+++... .+.+....+++.+|.++...|++++|+.++++++...+. .....
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~ 76 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY---PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK---SPKAP 76 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC---CCccc
Confidence 478999999999999999999999998762 223444678999999999999999999999999987652 22345
Q ss_pred HHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH
Q psy10738 141 RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 141 ~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 190 (609)
.++..+|.++...|+ +++|+.++.+++...
T Consensus 77 ~~~~~~~~~~~~~~~--------------------~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 77 DALLKLGMSLQELGD--------------------KEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHHHhCC--------------------hHHHHHHHHHHHHHC
Confidence 678999999999999 999999999988874
No 175
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.35 E-value=0.00084 Score=66.39 Aligned_cols=269 Identities=14% Similarity=0.044 Sum_probs=176.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
-..+.+......|+|+.|.+-|+..+. +++....-+..|-.-....|..+.|+.|.+.+... .+....+.
T Consensus 122 IhlLeAQaal~eG~~~~Ar~kfeAMl~----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~------Ap~l~WA~ 191 (531)
T COG3898 122 IHLLEAQAALLEGDYEDARKKFEAMLD----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK------APQLPWAA 191 (531)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhc----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh------ccCCchHH
Confidence 345567788888999999988888764 44433333333334445678899999998888887 44455555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
...-......|+++.|++..+.......-..+.....++-..-+.......- +...|....
T Consensus 192 ~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda-------------------dp~~Ar~~A 252 (531)
T COG3898 192 RATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA-------------------DPASARDDA 252 (531)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC-------------------ChHHHHHHH
Confidence 5555666788999999998887665433222222222222222222222221 156777777
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q psy10738 184 EQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHY 263 (609)
Q Consensus 184 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 263 (609)
.+++++ .+....+-..-+..++..|+..++-..++.+.+..+. -.++.+|....--+.++.-+
T Consensus 253 ~~a~KL------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-----------P~ia~lY~~ar~gdta~dRl 315 (531)
T COG3898 253 LEANKL------APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-----------PDIALLYVRARSGDTALDRL 315 (531)
T ss_pred HHHhhc------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-----------hHHHHHHHHhcCCCcHHHHH
Confidence 777776 3444455666788899999999998888877664321 12455555555555666777
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHc-CChHHHHHH
Q psy10738 264 KRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAAR-GNHEKALYF 342 (609)
Q Consensus 264 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~-g~~~~A~~~ 342 (609)
+++-.+..-..+ ........+...+.-|++..|..-.+.+..+.+. ..++..|+.+-... |+-.++..+
T Consensus 316 kRa~~L~slk~n---naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-------es~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 316 KRAKKLESLKPN---NAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-------ESAYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred HHHHHHHhcCcc---chHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-------hhHHHHHHHHHhhccCchHHHHHH
Confidence 776655432222 3566677888888999999998888877776654 45788888888766 888888888
Q ss_pred HHHHHH
Q psy10738 343 ATKHLE 348 (609)
Q Consensus 343 ~~~al~ 348 (609)
+-+++.
T Consensus 386 lAqav~ 391 (531)
T COG3898 386 LAQAVK 391 (531)
T ss_pred HHHHhc
Confidence 777765
No 176
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.34 E-value=1.8e-06 Score=65.80 Aligned_cols=63 Identities=38% Similarity=0.701 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcC-CHHHH
Q psy10738 141 RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLG-NFKQA 219 (609)
Q Consensus 141 ~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A 219 (609)
.++..+|.++...|+ |++|+.+|.+++++ .+....++.++|.+|..+| ++++|
T Consensus 4 ~~~~~~g~~~~~~~~--------------------~~~A~~~~~~ai~~------~p~~~~~~~~~g~~~~~~~~~~~~A 57 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGD--------------------YEEAIEYFEKAIEL------DPNNAEAYYNLGLAYMKLGKDYEEA 57 (69)
T ss_dssp HHHHHHHHHHHHTTH--------------------HHHHHHHHHHHHHH------STTHHHHHHHHHHHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhCccHHHH
Confidence 455566666666666 66666666666655 3334456666666666666 46666
Q ss_pred HHHHHHHHHH
Q psy10738 220 IYYHQERLKI 229 (609)
Q Consensus 220 ~~~~~~al~~ 229 (609)
+.++++++++
T Consensus 58 ~~~~~~al~l 67 (69)
T PF13414_consen 58 IEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 6666666554
No 177
>KOG0543|consensus
Probab=98.34 E-value=5.5e-06 Score=82.48 Aligned_cols=109 Identities=22% Similarity=0.225 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy10738 200 GRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD---------KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLA 270 (609)
Q Consensus 200 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 270 (609)
+.....-|+.|++.|+|..|...|++++........ ......++.|++.+|.++++|.+|+....++|.+.
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 344556799999999999999999999988763211 12235589999999999999999999999999987
Q ss_pred HHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q psy10738 271 QDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM 314 (609)
Q Consensus 271 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 314 (609)
+.+ ..+++..|.++..+|+|+.|+..|++++++.+...
T Consensus 288 ~~N------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk 325 (397)
T KOG0543|consen 288 PNN------VKALYRRGQALLALGEYDLARDDFQKALKLEPSNK 325 (397)
T ss_pred CCc------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH
Confidence 764 78999999999999999999999999999987643
No 178
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.34 E-value=0.00011 Score=69.33 Aligned_cols=190 Identities=18% Similarity=0.123 Sum_probs=124.8
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhH
Q psy10738 20 NMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGE 99 (609)
Q Consensus 20 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~ 99 (609)
.....++.+|...+..|+|++|+..|+.+....|..+-. ..+...++.+++..++++.|+.+.++-+.+... ++..
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~-~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~---~~n~ 107 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS-EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT---HPNA 107 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC---CCCh
Confidence 356788889999999999999999999999998876654 668899999999999999999999998887544 5667
Q ss_pred HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHH
Q psy10738 100 AKSSGNLGNTLKVM-----GKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKV 174 (609)
Q Consensus 100 ~~a~~~lg~~~~~~-----g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~ 174 (609)
..+++..|.++... .+...+...+...-++..+..+......+...
T Consensus 108 dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~----------------------------- 158 (254)
T COG4105 108 DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR----------------------------- 158 (254)
T ss_pred hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------------------------
Confidence 77888888886543 22222333333222233322232222111111
Q ss_pred hHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC
Q psy10738 175 CLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG 254 (609)
Q Consensus 175 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 254 (609)
+.++. ...+.--..+|..|.+.|.+..|+..+++.++-.+.. .....++..+..+|..+|
T Consensus 159 -----i~~~~------------d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t---~~~~eaL~~l~eaY~~lg 218 (254)
T COG4105 159 -----IVKLN------------DALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT---SAVREALARLEEAYYALG 218 (254)
T ss_pred -----HHHHH------------HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc---cchHHHHHHHHHHHHHhC
Confidence 11111 1112233456777888888888888877777664433 233346777777777788
Q ss_pred CHHHHHHH
Q psy10738 255 EYQAASEH 262 (609)
Q Consensus 255 ~~~~A~~~ 262 (609)
-.++|...
T Consensus 219 l~~~a~~~ 226 (254)
T COG4105 219 LTDEAKKT 226 (254)
T ss_pred ChHHHHHH
Confidence 77777543
No 179
>KOG1464|consensus
Probab=98.30 E-value=7.7e-05 Score=69.96 Aligned_cols=240 Identities=10% Similarity=0.048 Sum_probs=149.5
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 73 LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHA 152 (609)
Q Consensus 73 ~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~ 152 (609)
..+.++|+..|++++++-.+- ...-..++-.+-.+++.+|+|++-++.|.+.+...+..-.....-...+.+-..-..
T Consensus 40 e~~p~~Al~sF~kVlelEgEK--geWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEK--GEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccCHHHHHHHHHHHHhccccc--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 348899999999999984332 233467888899999999999999999999988766432111111112222111112
Q ss_pred cccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 153 KGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 153 ~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 232 (609)
..+ .+--..+|+..++..+...+..........+|.+|+..|+|.+-.+.+++.-..++.
T Consensus 118 S~~--------------------m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ 177 (440)
T KOG1464|consen 118 SKN--------------------MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQT 177 (440)
T ss_pred hhh--------------------hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcc
Confidence 222 444556666666666665555444556677899999988888877777776655544
Q ss_pred hCCh------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 233 FGDK------AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH 306 (609)
Q Consensus 233 ~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 306 (609)
.... .....+|..-..+|..+.+-..-...|++++.+-.....+.....+...=|..+...|++++|-.-|-+|
T Consensus 178 edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 178 EDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred ccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 2111 1123345555566667777777777777777776666555555555555566677777777777776666
Q ss_pred HHHHHHhcchh-hHHHHHHHHHHHHHHcC
Q psy10738 307 LIIAQQLMDRV-GEGRACWSLGNAHAARG 334 (609)
Q Consensus 307 l~~~~~~~~~~-~~~~~~~~La~~~~~~g 334 (609)
.+-..+.+.+. ....-|..||+.+.+.|
T Consensus 258 FKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 258 FKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 66655555432 23334555666665554
No 180
>KOG3616|consensus
Probab=98.30 E-value=0.0024 Score=67.83 Aligned_cols=187 Identities=16% Similarity=0.225 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhH
Q psy10738 100 AKSSGNLGNTLKVMGKYDEAMVCCKR------HLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVK 173 (609)
Q Consensus 100 ~~a~~~lg~~~~~~g~~~~A~~~~~~------al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~ 173 (609)
...|-..|.+|....++++|++||++ ++++++ ..-+......--..|.-+...|+
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielar-fafp~evv~lee~wg~hl~~~~q------------------ 721 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELAR-FAFPEEVVKLEEAWGDHLEQIGQ------------------ 721 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHH-hhCcHHHhhHHHHHhHHHHHHHh------------------
Confidence 45566677788888889999998875 444443 22223333344445556666666
Q ss_pred HhHHHHHHHHHH-------------------HHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------HH
Q psy10738 174 VCLQEAIKYYEQ-------------------NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQER------LK 228 (609)
Q Consensus 174 ~~~~~A~~~~~~-------------------al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~ 228 (609)
++.|+.+|-+ ++.+...+.+.......|..++.-|...|+|+-|.+.|.++ +.
T Consensus 722 --~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~ 799 (1636)
T KOG3616|consen 722 --LDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAID 799 (1636)
T ss_pred --HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHH
Confidence 5555555443 34444444444444556777888888889998888877554 22
Q ss_pred H-------------HHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHH------HHHHHHHHHcCC------------cH
Q psy10738 229 I-------------AREFGDKAAERRANSNLGNSHIFLGEYQAASEHY------KRTLVLAQDLGD------------RA 277 (609)
Q Consensus 229 ~-------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~------------~~ 277 (609)
+ ..+...+......|...+.-+-..|+|.+|...| .+++.+..+.+- ..
T Consensus 800 my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChh
Confidence 2 2222223333344555555555666666665554 344444443321 11
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy10738 278 VEAQACYSLGNTYTLLRDYPTAIDYHLRHL 307 (609)
Q Consensus 278 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al 307 (609)
....+...+|.-|...|+...|...|.++-
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 223445566666667777777766666554
No 181
>PRK11906 transcriptional regulator; Provisional
Probab=98.30 E-value=2.3e-05 Score=80.06 Aligned_cols=164 Identities=15% Similarity=0.072 Sum_probs=125.2
Q ss_pred HHH--HHHHHHHHHHhcCC---hHHHHHHHHHHH---HhCCcchhHHHHHHHHHHHHHHHh---------CCHHHHHHHH
Q psy10738 21 MCL--ELALEGERLCKAGD---CRAGVAFFQAAI---QAGTDDLRTLSAIYSQLGNAYFYL---------GDYQKAMQYH 83 (609)
Q Consensus 21 ~~~--~l~~~g~~~~~~g~---~~~A~~~~~~al---~~~~~~~~~~a~~~~~lg~~~~~~---------g~~~~A~~~~ 83 (609)
..+ .++++|...+..+. .+.|..+|.+|+ .++|+. +.+|..++.+++.. .+..+|....
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~----a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A 327 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLK----TECYCLLAECHMSLALHGKSELELAAQKALELL 327 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCccc----HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 445 67888888876664 567999999999 667664 55788888887764 2345677777
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCC
Q psy10738 84 KQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQ 163 (609)
Q Consensus 84 ~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~ 163 (609)
++|+++ .+..+.++..+|.++...|+++.|...|++|+.+.+ ..+.+++..|.+....|+
T Consensus 328 ~rAvel------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~P------n~A~~~~~~~~~~~~~G~-------- 387 (458)
T PRK11906 328 DYVSDI------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHST------DIASLYYYRALVHFHNEK-------- 387 (458)
T ss_pred HHHHhc------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCC------ccHHHHHHHHHHHHHcCC--------
Confidence 788877 888899999999999999999999999999999988 788899999999999999
Q ss_pred CCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10738 164 DPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQE 225 (609)
Q Consensus 164 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 225 (609)
.++|.+.+++++++. +...+.....+-.-.+.-.-.+.|+..|-+
T Consensus 388 ------------~~~a~~~i~~alrLs-----P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 388 ------------IEEARICIDKSLQLE-----PRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred ------------HHHHHHHHHHHhccC-----chhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 999999999999883 222222223333312334556777776644
No 182
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.26 E-value=0.00096 Score=71.19 Aligned_cols=299 Identities=13% Similarity=0.065 Sum_probs=171.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC------------
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMED------------ 95 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d------------ 95 (609)
+|..++-.+++++|.++++.--...|-..-..+.+.+.-|..-+...+.+.|.+.+.++...+.....
T Consensus 2 ~a~~lflnn~~~eAe~~l~~~~~~s~~h~lg~~~i~fl~A~ltfe~~~~~~A~~~l~~a~~~~~~~~k~~~~~~~~~~~~ 81 (468)
T PF10300_consen 2 KAIDLFLNNRFKEAEELLSPRADESPYHALGYGVIAFLKAMLTFEPEDIEEALEALKEAESLANKFRKKASKVSKKSNIS 81 (468)
T ss_pred hHHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHhhccccccccccc
Confidence 46778889999999999986533333222233334444444445566888999999888887763210
Q ss_pred ---hh-------hHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHcC---------------------
Q psy10738 96 ---KL-------GEAKSSGNLGNTLKVMGK----------YDEAMVCCKRHLEISRQLN--------------------- 134 (609)
Q Consensus 96 ---~~-------~~~~a~~~lg~~~~~~g~----------~~~A~~~~~~al~l~~~~~--------------------- 134 (609)
.+ -.+++....|.+....+. ...|...|++..+......
T Consensus 82 ~~~~~~~~~~el~~AE~~L~~Ail~~~~es~~~~iKg~~~lRkay~~y~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (468)
T PF10300_consen 82 NSIYPEELHAELCYAEALLLKAILTFLSESLVSFIKGGYKLRKAYKIYKECMKIIEKLKKKAKSSSPGEPDSHDSWDDDS 161 (468)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccccccccccc
Confidence 00 123444445555554444 2344455555544444221
Q ss_pred ----CcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHh---------HHhHHHHHHHHHHHHHHHHHhCChHH-HH
Q psy10738 135 ----DKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEV---------KVCLQEAIKYYEQNLALMKEINDTAA-QG 200 (609)
Q Consensus 135 ----d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~al~~~~~~~~~~~-~~ 200 (609)
+......++...|.......- +|+.. .-+-+.++..+.++.+ ...+..+.. ..
T Consensus 162 ~~~~d~~~~sgv~~G~G~f~L~lSl------------LPp~~~kll~~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~ 228 (468)
T PF10300_consen 162 TKPIDEFFESGVYFGFGLFNLVLSL------------LPPKVLKLLSFVGFSGDRELGLRLLWEASK-SENIRSPLAALV 228 (468)
T ss_pred cchhHHHHHHhHHHHHHHHHHHHHh------------CCHHHHHHHhhcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHH
Confidence 001122233333332222111 00000 0014566666665543 111111111 01
Q ss_pred -HHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q psy10738 201 -RACGNLGNTYY----LLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD 275 (609)
Q Consensus 201 -~~~~~lg~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 275 (609)
..|+.....+. ...+.+.|.+.+......+|+.. ..+...|.++...|+.++|++.|++++......
T Consensus 229 LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~------lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~-- 300 (468)
T PF10300_consen 229 LLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSA------LFLFFEGRLERLKGNLEEAIESFERAIESQSEW-- 300 (468)
T ss_pred HHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH--
Confidence 11111111111 23355667777777666655433 267788999999999999999999988533332
Q ss_pred cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHH
Q psy10738 276 RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNH-------EKALYFATKHLE 348 (609)
Q Consensus 276 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~-------~~A~~~~~~al~ 348 (609)
+.....+++.+|.++..+++|++|..++.+..+. +.+..+...+..|-++...|+. ++|..++.++-.
T Consensus 301 ~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-----s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 301 KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-----SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 2345678899999999999999999999887763 2344666778889999999999 666666666666
Q ss_pred HHHH
Q psy10738 349 ISKQ 352 (609)
Q Consensus 349 l~~~ 352 (609)
+..+
T Consensus 376 l~~k 379 (468)
T PF10300_consen 376 LKQK 379 (468)
T ss_pred HHhh
Confidence 6544
No 183
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.26 E-value=0.0026 Score=63.00 Aligned_cols=291 Identities=17% Similarity=0.065 Sum_probs=197.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
.-.|.+....||-..|.+.-.++-++-..|.+ ..++..-+..-...|+++.|.+-|+..+.- +.....-+..
T Consensus 88 LStGliAagAGda~lARkmt~~~~~llssDqe--pLIhlLeAQaal~eG~~~~Ar~kfeAMl~d------PEtRllGLRg 159 (531)
T COG3898 88 LSTGLIAAGAGDASLARKMTARASKLLSSDQE--PLIHLLEAQAALLEGDYEDARKKFEAMLDD------PETRLLGLRG 159 (531)
T ss_pred HhhhhhhhccCchHHHHHHHHHHHhhhhccch--HHHHHHHHHHHHhcCchHHHHHHHHHHhcC------hHHHHHhHHH
Confidence 33478888889999999999988766554544 335566677778889999999999887664 4443334444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
|-.-....|..+.|..|.+++....+ ....+....-...+..|+ ++.|++..+.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap------~l~WA~~AtLe~r~~~gd--------------------Wd~AlkLvd~ 213 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAP------QLPWAARATLEARCAAGD--------------------WDGALKLVDA 213 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhcc------CCchHHHHHHHHHHhcCC--------------------hHHHHHHHHH
Confidence 44445678999999999999998888 334455555556677899 9999999887
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy10738 186 NLALMKEINDTAAQGRACGNLGNTYY-LLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYK 264 (609)
Q Consensus 186 al~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 264 (609)
......-..+......+-..-+.... ...+...|.....++.++.+.... +-..-+..++..|+..++-..++
T Consensus 214 ~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvP------aav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 214 QRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVP------AAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccch------HHHHHHHHHHhccchhhhhhHHH
Confidence 66543222222222222222222222 234678888888888888777655 55667889999999999998888
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy10738 265 RTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFAT 344 (609)
Q Consensus 265 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~ 344 (609)
.+-+..+. -.++.+|....--+.++.-++++-.+..- +..........++....-|++..|..-.+
T Consensus 288 ~aWK~ePH-----------P~ia~lY~~ar~gdta~dRlkRa~~L~sl---k~nnaes~~~va~aAlda~e~~~ARa~Ae 353 (531)
T COG3898 288 TAWKAEPH-----------PDIALLYVRARSGDTALDRLKRAKKLESL---KPNNAESSLAVAEAALDAGEFSAARAKAE 353 (531)
T ss_pred HHHhcCCC-----------hHHHHHHHHhcCCCcHHHHHHHHHHHHhc---CccchHHHHHHHHHHHhccchHHHHHHHH
Confidence 77654432 12445555554555666667766555432 23356678888999999999999998887
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHc-CCCC
Q psy10738 345 KHLEISKQLGDPLGQVTAQMNVTDLRKAL-GMST 377 (609)
Q Consensus 345 ~al~l~~~~~~~~~~~~a~~~la~l~~~~-g~~~ 377 (609)
.+..+. ....++..|+++-... |+..
T Consensus 354 aa~r~~-------pres~~lLlAdIeeAetGDqg 380 (531)
T COG3898 354 AAAREA-------PRESAYLLLADIEEAETGDQG 380 (531)
T ss_pred HHhhhC-------chhhHHHHHHHHHhhccCchH
Confidence 777654 3345666777776655 5543
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.26 E-value=4e-06 Score=63.07 Aligned_cols=59 Identities=25% Similarity=0.475 Sum_probs=48.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 27 LEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTL 89 (609)
Q Consensus 27 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 89 (609)
..|..++..|++++|+..|+++++..|++. .+++.+|.++..+|++++|+.+|+++++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~----~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNP----EAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHH----HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 357888888999999999999988888764 48888888988889999999888888876
No 185
>KOG4234|consensus
Probab=98.26 E-value=1.9e-05 Score=70.73 Aligned_cols=103 Identities=24% Similarity=0.318 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTD-DLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
.+-.+|.-++..|+|.+|..-|..||...|. .....+.+|.+.|.+...++.++.|+..+.+++++ .+....+
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel------~pty~kA 170 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL------NPTYEKA 170 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc------CchhHHH
Confidence 4445699999999999999999999999875 34556778899999999999999999999999999 8888899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLEISRQ 132 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 132 (609)
+...|.+|..+.+|++|+.-|.+.++..+.
T Consensus 171 l~RRAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 171 LERRAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 999999999999999999999999998773
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.25 E-value=2.9e-05 Score=65.70 Aligned_cols=100 Identities=20% Similarity=0.166 Sum_probs=83.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
.+..|..+-..|+.++|+.+|++++..+.... ....++..+|..+..+|++++|+..+++++.. ..+.+....+..
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~-~~~~a~i~lastlr~LG~~deA~~~L~~~~~~---~p~~~~~~~l~~ 79 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGA-DRRRALIQLASTLRNLGRYDEALALLEEALEE---FPDDELNAALRV 79 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCccccHHHHH
Confidence 35568899999999999999999999876544 35678999999999999999999999998764 233344666777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLE 128 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~ 128 (609)
.++.++...|++++|+..+..++.
T Consensus 80 f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 889999999999999999987764
No 187
>KOG2471|consensus
Probab=98.25 E-value=7.8e-05 Score=75.38 Aligned_cols=314 Identities=12% Similarity=0.012 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHc-------
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNA-YFYLGDYQKAMQYHKQDLTLARNM------- 93 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~~~~------- 93 (609)
-+.+...+...+..+.|+...++++..-.++..+.. ++++.+.+ |+..|.+.. ....+....+-...
T Consensus 17 ~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~----v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~~~~ 91 (696)
T KOG2471|consen 17 NYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGP----VLHNRAVVSYYKTGCTQH-SVLLKELEALTADADAPGDVS 91 (696)
T ss_pred hHHHHHHHHhccCCcchHHHHHHHHHHHhccccccc----eeeehhhHHHHhcccchh-HHHHHHHHHHHHhhccccchh
Confidence 355666677888999999999999998888766533 33444444 444444322 22233222221111
Q ss_pred --CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchH
Q psy10738 94 --EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEE 171 (609)
Q Consensus 94 --~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~ 171 (609)
-+.......+++.|.+|+....+..|+..........+....... +......-.++....+
T Consensus 92 ~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~a-a~v~~l~~~l~~~t~q---------------- 154 (696)
T KOG2471|consen 92 SGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSA-ASVTLLSDLLAAETSQ---------------- 154 (696)
T ss_pred cchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH----------------
Confidence 112223567888999999999999999887776655543332211 2222333344444444
Q ss_pred hHHhHHHHHHHHHHHHHHHHHh-----CCh-----------HHH-----------HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10738 172 VKVCLQEAIKYYEQNLALMKEI-----NDT-----------AAQ-----------GRACGNLGNTYYLLGNFKQAIYYHQ 224 (609)
Q Consensus 172 ~~~~~~~A~~~~~~al~~~~~~-----~~~-----------~~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~ 224 (609)
.++|+.+..-.-++.... ++. +.. ..+.......|..+.+...+..-.+
T Consensus 155 ----~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK 230 (696)
T KOG2471|consen 155 ----CEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVK 230 (696)
T ss_pred ----HHHHHHHHHHHHHHHHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhh
Confidence 566665544322222111 100 000 0111122222333344444444444
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC----cHHHHHHHHHHHHHHHHhCCHHHHH
Q psy10738 225 ERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD----RAVEAQACYSLGNTYTLLRDYPTAI 300 (609)
Q Consensus 225 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~ 300 (609)
-++.++... ..+....+..++..|++.+|.+.+...- +....+. .-.....+.++|.+++.+|.|.-+.
T Consensus 231 ~vmn~a~~s------~~~l~LKsq~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~ 303 (696)
T KOG2471|consen 231 HVMNIAQDS------SMALLLKSQLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASS 303 (696)
T ss_pred hhhhhcCCC------cHHHHHHHHHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHH
Confidence 443333321 2366777888999999999988775432 2222221 1123456689999999999999999
Q ss_pred HHHHHHHH-HHHHhcc-----------hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q psy10738 301 DYHLRHLI-IAQQLMD-----------RVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTD 368 (609)
Q Consensus 301 ~~~~~al~-~~~~~~~-----------~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~ 368 (609)
.+|.+|++ ....+.. ......++++.|..|...|++..|.++|.++...+ ....+.|..||+
T Consensus 304 ~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf------h~nPrlWLRlAE 377 (696)
T KOG2471|consen 304 VLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF------HRNPRLWLRLAE 377 (696)
T ss_pred HHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH------hcCcHHHHHHHH
Confidence 99999996 4444322 12345688999999999999999999999999999 445678888998
Q ss_pred HHHHcC
Q psy10738 369 LRKALG 374 (609)
Q Consensus 369 l~~~~g 374 (609)
++....
T Consensus 378 cCima~ 383 (696)
T KOG2471|consen 378 CCIMAL 383 (696)
T ss_pred HHHHHh
Confidence 886543
No 188
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.24 E-value=6.8e-05 Score=68.13 Aligned_cols=234 Identities=16% Similarity=0.035 Sum_probs=145.8
Q ss_pred CCCcchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q psy10738 14 GGADGGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM 93 (609)
Q Consensus 14 g~~~~a~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 93 (609)
++......+.-++.+|..|-..|-..-|.--|.+++.+.|+- +.+++.+|..+...|+|+.|.+.|...+++
T Consensus 57 ~~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m----~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---- 128 (297)
T COG4785 57 RALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDM----PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---- 128 (297)
T ss_pred ccCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc----HHHHHHHHHHHHhcccchHHHHHhhhHhcc----
Confidence 344444555566778999999999999999999999999986 458999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhH
Q psy10738 94 EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVK 173 (609)
Q Consensus 94 ~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~ 173 (609)
+|..-.+..+.|..++.-|+|.-|.+-+.+...-.+ .|+..... +|....+.
T Consensus 129 --Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~--~DPfR~LW-------LYl~E~k~----------------- 180 (297)
T COG4785 129 --DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDP--NDPFRSLW-------LYLNEQKL----------------- 180 (297)
T ss_pred --CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCC--CChHHHHH-------HHHHHhhC-----------------
Confidence 888888999999999999999999988776554333 22222111 12211110
Q ss_pred HhHHHHHHHHHH-HHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHH
Q psy10738 174 VCLQEAIKYYEQ-NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD-KAAERRANSNLGNSHI 251 (609)
Q Consensus 174 ~~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~ 251 (609)
+..+|...+.+ +....+ +......+-+. +|+..+ ...++++...+.+... ......+|+.+|..+.
T Consensus 181 -dP~~A~tnL~qR~~~~d~---e~WG~~iV~~y-------LgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 181 -DPKQAKTNLKQRAEKSDK---EQWGWNIVEFY-------LGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYL 248 (297)
T ss_pred -CHHHHHHHHHHHHHhccH---hhhhHHHHHHH-------HhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh
Confidence 14555443322 222110 11111111222 233221 1223333332221110 1223458999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHH
Q psy10738 252 FLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP 297 (609)
Q Consensus 252 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 297 (609)
..|+.++|...|+-++...- -+-...-.+...++.++....+..
T Consensus 249 ~~G~~~~A~~LfKLaiannV--ynfVE~RyA~~EL~~l~q~~~~l~ 292 (297)
T COG4785 249 SLGDLDEATALFKLAVANNV--YNFVEHRYALLELSLLGQDQDDLA 292 (297)
T ss_pred ccccHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhccccchhh
Confidence 99999999999987765321 111222345555665555444333
No 189
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.23 E-value=0.00045 Score=65.42 Aligned_cols=205 Identities=27% Similarity=0.371 Sum_probs=157.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQA--GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
.....+..+...+++..++..+..++.. .+. ....+...|..+...+++..++..+..++... .....
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 130 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPN----LAEALLNLGLLLEALGKYEEALELLEKALALD------PDPDL 130 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccc----hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC------CCcch
Confidence 4445678889999999999999999873 333 35578889999999999999999999988762 22223
Q ss_pred HHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHH
Q psy10738 102 SSGNLGN-TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAI 180 (609)
Q Consensus 102 a~~~lg~-~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~ 180 (609)
.....+. ++...|+++.|..++.+++...+. .......+...+..+...++ ++.|+
T Consensus 131 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--------------------~~~a~ 187 (291)
T COG0457 131 AEALLALGALYELGDYEEALELYEKALELDPE---LNELAEALLALGALLEALGR--------------------YEEAL 187 (291)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ccchHHHHHHhhhHHHHhcC--------------------HHHHH
Confidence 3334444 899999999999999999553221 12345566666666888888 99999
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHH
Q psy10738 181 KYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAAS 260 (609)
Q Consensus 181 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 260 (609)
..+.+++...... ....+..++..+...++++.|+..+.+++...+. ....+..++..+...+.++.+.
T Consensus 188 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 256 (291)
T COG0457 188 ELLEKALKLNPDD-----DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD------NAEALYNLALLLLELGRYEEAL 256 (291)
T ss_pred HHHHHHHhhCccc-----chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc------cHHHHhhHHHHHHHcCCHHHHH
Confidence 9999998874332 4567889999999999999999999999988765 2235666777777777899999
Q ss_pred HHHHHHHHHHHH
Q psy10738 261 EHYKRTLVLAQD 272 (609)
Q Consensus 261 ~~~~~al~~~~~ 272 (609)
..+.+++...+.
T Consensus 257 ~~~~~~~~~~~~ 268 (291)
T COG0457 257 EALEKALELDPD 268 (291)
T ss_pred HHHHHHHHhCcc
Confidence 999998887664
No 190
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.23 E-value=3.9e-05 Score=82.35 Aligned_cols=149 Identities=15% Similarity=0.040 Sum_probs=103.5
Q ss_pred hCCcchhHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHH----HHHHHH
Q psy10738 51 AGTDDLRTLSAIYSQLGNAYFYLGD---YQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYD----EAMVCC 123 (609)
Q Consensus 51 ~~~~~~~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~----~A~~~~ 123 (609)
..|.++. +.-++..|..|...++ +..|+.+|++|+++ +|..+.++..++.+|.....+. ..+...
T Consensus 332 ~~~~~~~--Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a 403 (517)
T PRK10153 332 GLPHQGA--ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS------EPDFTYAQAEKALADIVRHSQQPLDEKQLAAL 403 (517)
T ss_pred cCCCCHH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 3455555 4456667777766554 78999999999999 8888999988888876653332 112222
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHH
Q psy10738 124 KRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRAC 203 (609)
Q Consensus 124 ~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 203 (609)
.++...............++..+|..+...|+ +++|..++++|+.+. + ...+|
T Consensus 404 ~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~--------------------~~~A~~~l~rAl~L~------p-s~~a~ 456 (517)
T PRK10153 404 STELDNIVALPELNVLPRIYEILAVQALVKGK--------------------TDEAYQAINKAIDLE------M-SWLNY 456 (517)
T ss_pred HHHHHHhhhcccCcCChHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHcC------C-CHHHH
Confidence 22222222221112234677788888888888 999999999988873 2 25688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q psy10738 204 GNLGNTYYLLGNFKQAIYYHQERLKIAREFG 234 (609)
Q Consensus 204 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 234 (609)
..+|.++...|++++|++.|++|+.+.+...
T Consensus 457 ~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 457 VLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 8899999999999999999999988876544
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.23 E-value=2.9e-05 Score=65.74 Aligned_cols=102 Identities=27% Similarity=0.273 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10738 141 RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAI 220 (609)
Q Consensus 141 ~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 220 (609)
.+++++|.++-..|+ .++|+.+|++++... -+......++..+|..+..+|++++|+
T Consensus 2 ~~~~~~A~a~d~~G~--------------------~~~Ai~~Y~~Al~~g---L~~~~~~~a~i~lastlr~LG~~deA~ 58 (120)
T PF12688_consen 2 RALYELAWAHDSLGR--------------------EEEAIPLYRRALAAG---LSGADRRRALIQLASTLRNLGRYDEAL 58 (120)
T ss_pred chHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHcC---CCchHHHHHHHHHHHHHHHcCCHHHHH
Confidence 467888888888888 888888888887741 123445678888888888899999998
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy10738 221 YYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV 268 (609)
Q Consensus 221 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 268 (609)
..+++++.-.+. ......+...++.++...|++++|+..+-.++.
T Consensus 59 ~~L~~~~~~~p~---~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 59 ALLEEALEEFPD---DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHCCC---ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888764332 222233556677788888888888888766553
No 192
>KOG4555|consensus
Probab=98.19 E-value=6.3e-05 Score=62.59 Aligned_cols=103 Identities=20% Similarity=0.276 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
..++-++|..+...|+.+.|++.|.+++.+.|.. +.+|++.+..+..+|+.++|+..++++++++... ......
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r----aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trtacq 116 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPER----ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRTACQ 116 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccc----hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chHHHH
Confidence 3456667999999999999999999999999987 4599999999999999999999999999995432 445678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEIS 130 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 130 (609)
++...|.+|..+|+-+.|..-|+.+-++-
T Consensus 117 a~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 117 AFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 89999999999999999999999887654
No 193
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.17 E-value=3e-05 Score=75.65 Aligned_cols=103 Identities=14% Similarity=0.044 Sum_probs=77.0
Q ss_pred HHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHH
Q psy10738 242 ANSNLGNSH-IFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 320 (609)
Q Consensus 242 ~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 320 (609)
..+..|..+ ...|+|++|+..|++.+...++. .....+++.+|.+|+..|++++|+.+|++++...+. .....
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s---~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~---s~~~~ 217 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS---TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK---SPKAA 217 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---Ccchh
Confidence 445555554 45688888888888888777653 223567788888888888888888888888766554 34466
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 321 RACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 321 ~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
.+++.+|.++..+|++++|..+|++.++.+
T Consensus 218 dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 218 DAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 688888888888888888888888877765
No 194
>KOG1070|consensus
Probab=98.16 E-value=0.00081 Score=76.25 Aligned_cols=224 Identities=10% Similarity=0.007 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHH
Q psy10738 39 RAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDE 118 (609)
Q Consensus 39 ~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~ 118 (609)
.+..+-|++.+.-+|+.. -.|...-..+...++.++|.+.+++||....-. .......+|..+-++...-|.-+.
T Consensus 1441 pesaeDferlvrssPNSS----i~WI~YMaf~LelsEiekAR~iaerAL~tIN~R-EeeEKLNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSS----ILWIRYMAFHLELSEIEKARKIAERALKTINFR-EEEEKLNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred CcCHHHHHHHHhcCCCcc----hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcc-hhHHHHHHHHHHHhHHHhhCcHHH
Confidence 344566777777788763 345555556677899999999999998764100 012223333333333444466667
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHH
Q psy10738 119 AMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAA 198 (609)
Q Consensus 119 A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 198 (609)
-.+.|++|.+++. ...+|..|.-+|...++ +++|.++++..++-+. .
T Consensus 1516 l~kVFeRAcqycd-------~~~V~~~L~~iy~k~ek--------------------~~~A~ell~~m~KKF~------q 1562 (1710)
T KOG1070|consen 1516 LKKVFERACQYCD-------AYTVHLKLLGIYEKSEK--------------------NDEADELLRLMLKKFG------Q 1562 (1710)
T ss_pred HHHHHHHHHHhcc-------hHHHHHHHHHHHHHhhc--------------------chhHHHHHHHHHHHhc------c
Confidence 7778888877764 23478888999999999 9999999998877654 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHH
Q psy10738 199 QGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV 278 (609)
Q Consensus 199 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 278 (609)
...+|...|..++...+-+.|...+.+|+...++... .......|.+.++.|+.+.+...|+..+..+|+.
T Consensus 1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH----v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR----- 1633 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH----VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR----- 1633 (1710)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh----HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc-----
Confidence 3457888899999999999999999999998887322 2356678889999999999999999988887764
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy10738 279 EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 310 (609)
Q Consensus 279 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 310 (609)
...|..+...-.+.|+.+.+...|++++.+.
T Consensus 1634 -tDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1634 -TDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred -hhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 4566677777888899999999999988653
No 195
>PRK15331 chaperone protein SicA; Provisional
Probab=98.16 E-value=3.1e-05 Score=68.16 Aligned_cols=96 Identities=17% Similarity=0.071 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
-.++..|..++..|++++|..+|+-..-.++.+++ .+..||.++..+++|++|+..|..+..+ ....+..
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~----Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l------~~~dp~p 107 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD----YTMGLAAVCQLKKQFQKACDLYAVAFTL------LKNDYRP 107 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHc------ccCCCCc
Confidence 34556689999999999999999999999998855 6899999999999999999999999887 3444556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLE 128 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~ 128 (609)
.+..|.||..+|+...|..+|+.+++
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 88999999999999999999999887
No 196
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.16 E-value=1.8e-05 Score=75.29 Aligned_cols=103 Identities=22% Similarity=0.255 Sum_probs=92.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
++..|..+++.|+|..|...|..-++..|++.. .+.++++||.+++.+|+|+.|...|..+.. ..++.+...++++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~-~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KApdall 219 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY-TPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc-cchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCChHHHH
Confidence 566789999999999999999999999997654 577999999999999999999999988766 4555777889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
.+|.+...+|+.++|...++++++-++
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 999999999999999999999988776
No 197
>KOG1070|consensus
Probab=98.13 E-value=0.00073 Score=76.59 Aligned_cols=197 Identities=10% Similarity=0.030 Sum_probs=159.1
Q ss_pred HHHhcCChHHHHHHHHHHHHh-CCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q psy10738 31 RLCKAGDCRAGVAFFQAAIQA-GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNT 109 (609)
Q Consensus 31 ~~~~~g~~~~A~~~~~~al~~-~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~ 109 (609)
.....++.++|.+.+++||.. ++...+....+|..+-+....-|.-+...+.|++|.+.+ ....+|..|..+
T Consensus 1467 f~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-------d~~~V~~~L~~i 1539 (1710)
T KOG1070|consen 1467 FHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-------DAYTVHLKLLGI 1539 (1710)
T ss_pred HHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-------chHHHHHHHHHH
Confidence 456778999999999999974 454444444556555555555677777788888887763 235678899999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 110 LKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 110 ~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
|...+++++|.++++..++-+. ....+|..+|..+....+ -+.|...+.+|++.
T Consensus 1540 y~k~ek~~~A~ell~~m~KKF~------q~~~vW~~y~~fLl~~ne--------------------~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKKFG------QTRKVWIMYADFLLRQNE--------------------AEAARELLKRALKS 1593 (1710)
T ss_pred HHHhhcchhHHHHHHHHHHHhc------chhhHHHHHHHHHhcccH--------------------HHHHHHHHHHHHhh
Confidence 9999999999999999888776 456688899999999888 88999999999988
Q ss_pred HHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 190 MKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 269 (609)
Q Consensus 190 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 269 (609)
.++. .........|.+-+..|+.+.+...|+..+..+|+-.| .|..+...-...|+.+.+...|++++.+
T Consensus 1594 lPk~----eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtD------lW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1594 LPKQ----EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTD------LWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred cchh----hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchh------HHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 7652 23456677788999999999999999999998888777 7888888888999999999999998875
Q ss_pred H
Q psy10738 270 A 270 (609)
Q Consensus 270 ~ 270 (609)
.
T Consensus 1664 ~ 1664 (1710)
T KOG1070|consen 1664 K 1664 (1710)
T ss_pred C
Confidence 4
No 198
>PRK11906 transcriptional regulator; Provisional
Probab=98.13 E-value=9.8e-05 Score=75.58 Aligned_cols=147 Identities=11% Similarity=0.051 Sum_probs=115.2
Q ss_pred HHHhCCcch---hHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHH---HHHHHcCChhhHHHHHHHHHHHHHHc-----
Q psy10738 48 AIQAGTDDL---RTLSAIYSQLGNAYFYLGD---YQKAMQYHKQDL---TLARNMEDKLGEAKSSGNLGNTLKVM----- 113 (609)
Q Consensus 48 al~~~~~~~---~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~al---~~~~~~~d~~~~~~a~~~lg~~~~~~----- 113 (609)
+....|.+. ..+..-++..|...+..+. .+.|+.+|.+++ ++ +|..+.+|..++.++...
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~l------dp~~a~a~~~lA~~h~~~~~~g~ 313 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDI------QTLKTECYCLLAECHMSLALHGK 313 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccC------CcccHHHHHHHHHHHHHHHHhcC
Confidence 344445554 3222244677777766654 467888888888 66 788899999999988765
Q ss_pred ----CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 114 ----GKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 114 ----g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
....+|.....+|+++.+ ..+.++..+|.+....|+ ++.|...|++|+.+
T Consensus 314 ~~~~~~~~~a~~~A~rAveld~------~Da~a~~~~g~~~~~~~~--------------------~~~a~~~f~rA~~L 367 (458)
T PRK11906 314 SELELAAQKALELLDYVSDITT------VDGKILAIMGLITGLSGQ--------------------AKVSHILFEQAKIH 367 (458)
T ss_pred CCchHHHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHhhcc--------------------hhhHHHHHHHHhhc
Confidence 224567777777777766 667899999999999999 99999999999998
Q ss_pred HHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 190 MKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 190 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 232 (609)
.+..+.+++..|.+....|+.++|.+++++++++.|.
T Consensus 368 ------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 368 ------STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred ------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 6778889999999999999999999999999988654
No 199
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.11 E-value=6.3e-06 Score=61.95 Aligned_cols=62 Identities=31% Similarity=0.445 Sum_probs=56.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 64 SQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 64 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
+.+|..++..|++++|+..|++++.. .|....+++.+|.++..+|++++|+.+|++++++.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 35789999999999999999999988 788999999999999999999999999999998765
No 200
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.09 E-value=6.9e-05 Score=76.98 Aligned_cols=117 Identities=16% Similarity=0.243 Sum_probs=102.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q psy10738 30 ERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNT 109 (609)
Q Consensus 30 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~ 109 (609)
..+...++++.|+.+|++..+..|+ +...++.++...++..+|+..+.+++.. .+..+..+...+..
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe-------v~~~LA~v~l~~~~E~~AI~ll~~aL~~------~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE-------VAVLLARVYLLMNEEVEAIRLLNEALKE------NPQDSELLNLQAEF 243 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc-------HHHHHHHHHHhcCcHHHHHHHHHHHHHh------CCCCHHHHHHHHHH
Confidence 3445568999999999999988875 4566889999999999999999999966 56668889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 110 LKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 110 ~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
+...++++.|+.+.+++..+.| .....|+.|+.+|...|+ ++.|+..+..
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP------~~f~~W~~La~~Yi~~~d--------------------~e~ALlaLNs 293 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSP------SEFETWYQLAECYIQLGD--------------------FENALLALNS 293 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCc------hhHHHHHHHHHHHHhcCC--------------------HHHHHHHHhc
Confidence 9999999999999999999988 778899999999999999 9999876653
No 201
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.07 E-value=0.00096 Score=63.09 Aligned_cols=194 Identities=16% Similarity=0.124 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~ 139 (609)
+..++.-|......|++++|+..|+.... +....+..-.+...++.+++..+++++|+...++-+.+.+... ..
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~---~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~---n~ 107 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDS---RHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP---NA 107 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC---Ch
Confidence 45788899999999999999999998764 3444566688999999999999999999999999988877544 56
Q ss_pred HHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHH
Q psy10738 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQA 219 (609)
Q Consensus 140 ~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 219 (609)
..+++..|.++...=+ ...++...+...+...-.+..+..+..-...+...+-
T Consensus 108 dY~~YlkgLs~~~~i~---------------~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~------------ 160 (254)
T COG4105 108 DYAYYLKGLSYFFQID---------------DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIV------------ 160 (254)
T ss_pred hHHHHHHHHHHhccCC---------------ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHH------------
Confidence 6788888888665433 1111234444444444444444444433322222211
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 220 IYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA 299 (609)
Q Consensus 220 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 299 (609)
.++..+ +.--..+|..|.+.|.+..|+..++..++-.+.. ...-.++..+..+|..+|-.++|
T Consensus 161 --~~~d~L------------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t---~~~~eaL~~l~eaY~~lgl~~~a 223 (254)
T COG4105 161 --KLNDAL------------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT---SAVREALARLEEAYYALGLTDEA 223 (254)
T ss_pred --HHHHHH------------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc---cchHHHHHHHHHHHHHhCChHHH
Confidence 111111 1133467899999999999999999888765543 34566788889999999999988
Q ss_pred HHHH
Q psy10738 300 IDYH 303 (609)
Q Consensus 300 ~~~~ 303 (609)
...-
T Consensus 224 ~~~~ 227 (254)
T COG4105 224 KKTA 227 (254)
T ss_pred HHHH
Confidence 7643
No 202
>KOG1463|consensus
Probab=98.06 E-value=0.0014 Score=63.73 Aligned_cols=250 Identities=14% Similarity=0.109 Sum_probs=172.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDK----LSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAI 180 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~----~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~ 180 (609)
..+.......++++++..+...+......... ...-....++|.+|...|+ +.+-.
T Consensus 9 e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~--------------------~~~lr 68 (411)
T KOG1463|consen 9 ERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGD--------------------AEELR 68 (411)
T ss_pred HHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccc--------------------hhHHH
Confidence 33444455566677777777776642211111 1234567789999999999 55555
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 181 KYYEQNLALMKEINDTAAQGRACGNL-GNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAA 259 (609)
Q Consensus 181 ~~~~~al~~~~~~~~~~~~~~~~~~l-g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 259 (609)
.........+...+... .+.....+ -.+...-+..+.-+..+.++++.+............-..+..+|...++|.+|
T Consensus 69 ~li~~~Rpf~~~v~Kak-aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteA 147 (411)
T KOG1463|consen 69 DLITSLRPFLSSVSKAK-AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEA 147 (411)
T ss_pred HHHHHHHHHHHHhhhHH-HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 55444444433332221 12222222 22333345566778888888888877665555555667789999999999999
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHcCChHH
Q psy10738 260 SEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD-RVGEGRACWSLGNAHAARGNHEK 338 (609)
Q Consensus 260 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~La~~~~~~g~~~~ 338 (609)
+......+.-.++..+......++..-..+|....+..+|...+..|-..+...-- +...+..-..-|.+|..-.+|.-
T Consensus 148 laL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykT 227 (411)
T KOG1463|consen 148 LALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKT 227 (411)
T ss_pred HHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccch
Confidence 99999999999999988888888888899999999999999998888776655433 33444455555778888899999
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCC
Q psy10738 339 ALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGM 375 (609)
Q Consensus 339 A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~ 375 (609)
|..||-+|.+-+..+++......++..+--+-..++.
T Consensus 228 afSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~ 264 (411)
T KOG1463|consen 228 AFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNL 264 (411)
T ss_pred HHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999876666665555444444444
No 203
>KOG4234|consensus
Probab=98.05 E-value=6.9e-05 Score=67.20 Aligned_cols=107 Identities=18% Similarity=0.190 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 200 GRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVE 279 (609)
Q Consensus 200 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 279 (609)
+..+-.-|+-++..|+|++|..-|..|+.+++.... .....+|.+.|.+.++++.++.|+..+.+++++.+..
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty------ 167 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY------ 167 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh------
Confidence 445566788899999999999999999999987654 4556789999999999999999999999999998874
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q psy10738 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 313 (609)
Q Consensus 280 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 313 (609)
..++...|.+|.++..|++|++-|.+.+++.+..
T Consensus 168 ~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 168 EKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 5677788999999999999999999999887653
No 204
>KOG4555|consensus
Probab=98.04 E-value=0.00018 Score=60.03 Aligned_cols=102 Identities=20% Similarity=0.142 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQ 281 (609)
Q Consensus 202 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 281 (609)
.+-.-|......|+.+.|++.|.+++.++++... +|+|.+..+..+|+.++|++-+++++++.... ......
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raS------ayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trtacq 116 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERAS------AYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRTACQ 116 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchH------hhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chHHHH
Confidence 3445577778889999999999999999887665 99999999999999999999999999987543 334567
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q psy10738 282 ACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 311 (609)
Q Consensus 282 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 311 (609)
++...|.+|..+|+-+.|..-|+.+-++-.
T Consensus 117 a~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 117 AFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 888999999999999999999998876643
No 205
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.03 E-value=1.7e-05 Score=60.15 Aligned_cols=66 Identities=21% Similarity=0.312 Sum_probs=53.3
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q psy10738 32 LCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLG 107 (609)
Q Consensus 32 ~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg 107 (609)
++..|++++|+..|++++...|++.. ++..+|.+|...|++++|...+++++.. .+....++..++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~l~~~~~~------~~~~~~~~~l~a 66 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPE----ARLLLAQCYLKQGQYDEAEELLERLLKQ------DPDNPEYQQLLA 66 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHH----HHHHHHHHHHHTT-HHHHHHHHHCCHGG------GTTHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHH------CcCHHHHHHHHh
Confidence 35789999999999999999998855 7889999999999999999999998877 444455554444
No 206
>KOG4648|consensus
Probab=98.02 E-value=2.8e-05 Score=75.14 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=90.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
+-.+|..|+++|.|++||.+|.+++...|.++. .+.+.+.+|+.+..|..|...+..|+.+ +.....+|.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV----~~~NRA~AYlk~K~FA~AE~DC~~AiaL------d~~Y~KAYS 169 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPV----YHINRALAYLKQKSFAQAEEDCEAAIAL------DKLYVKAYS 169 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCcc----chhhHHHHHHHHHHHHHHHHhHHHHHHh------hHHHHHHHH
Confidence 344599999999999999999999999997754 6788999999999999999999999999 788899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQ 132 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~l~~~ 132 (609)
..|..-..+|+..+|.+-|+.++.+-+.
T Consensus 170 RR~~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 170 RRMQARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 9999999999999999999999998774
No 207
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.00013 Score=70.28 Aligned_cols=120 Identities=22% Similarity=0.226 Sum_probs=104.4
Q ss_pred ChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC-
Q psy10738 37 DCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGK- 115 (609)
Q Consensus 37 ~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~- 115 (609)
..+.-+.-++.-+..+|+|.+ -|..||.+|+.+|++..|...|.+|+.+ .+..+..+..+|.+++.+.+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~e----gW~~Lg~~ym~~~~~~~A~~AY~~A~rL------~g~n~~~~~g~aeaL~~~a~~ 206 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAE----GWDLLGRAYMALGRASDALLAYRNALRL------AGDNPEILLGLAEALYYQAGQ 206 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcchhHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcCC
Confidence 366777888888889999855 7899999999999999999999999999 77778888888988877643
Q ss_pred --HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHH
Q psy10738 116 --YDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKE 192 (609)
Q Consensus 116 --~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 192 (609)
-.++...+++++...+ ...++.+.||..++..|+ |.+|+..++..++....
T Consensus 207 ~~ta~a~~ll~~al~~D~------~~iral~lLA~~afe~g~--------------------~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 207 QMTAKARALLRQALALDP------ANIRALSLLAFAAFEQGD--------------------YAEAAAAWQMLLDLLPA 259 (287)
T ss_pred cccHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHHccc--------------------HHHHHHHHHHHHhcCCC
Confidence 5678999999998877 778899999999999999 99999999998887544
No 208
>KOG2796|consensus
Probab=97.97 E-value=0.0015 Score=61.43 Aligned_cols=142 Identities=17% Similarity=0.178 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHH
Q psy10738 101 KSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAI 180 (609)
Q Consensus 101 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~ 180 (609)
.+.+.+..++.-.|.|.-.+..+.+.++.. ++........+|.+-...|+ .+.|.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-----~e~~p~L~s~Lgr~~MQ~GD--------------------~k~a~ 232 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYY-----PEQEPQLLSGLGRISMQIGD--------------------IKTAE 232 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhC-----CcccHHHHHHHHHHHHhccc--------------------HHHHH
Confidence 355667777777888888888888777733 22445566678888888888 77788
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHH
Q psy10738 181 KYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAAS 260 (609)
Q Consensus 181 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 260 (609)
.+++..-+....+........+..+.+.+|...++|..|...+.+++...+.... +.++.|.|....|+...|+
T Consensus 233 ~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~------a~NnKALcllYlg~l~DAi 306 (366)
T KOG2796|consen 233 KYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV------ANNNKALCLLYLGKLKDAL 306 (366)
T ss_pred HHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh------hhchHHHHHHHHHHHHHHH
Confidence 8887766666555555555667778888888888888888888777665443332 6677788888888888888
Q ss_pred HHHHHHHHHHHHc
Q psy10738 261 EHYKRTLVLAQDL 273 (609)
Q Consensus 261 ~~~~~al~~~~~~ 273 (609)
+.++.++...|..
T Consensus 307 K~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 307 KQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHhccCCcc
Confidence 8888877766643
No 209
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.95 E-value=0.00011 Score=75.55 Aligned_cols=117 Identities=13% Similarity=0.088 Sum_probs=96.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q psy10738 207 GNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 286 (609)
Q Consensus 207 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 286 (609)
-.++...++++.|+..+++..+.. ++ +...++.++...++..+|+..+.+++...+.. +..+...
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~---pe------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d------~~LL~~Q 240 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERD---PE------VAVLLARVYLLMNEEVEAIRLLNEALKENPQD------SELLNLQ 240 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcC---Cc------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC------HHHHHHH
Confidence 344556788999999999866543 22 55668999999999999999999999654432 7778888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy10738 287 GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFAT 344 (609)
Q Consensus 287 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~ 344 (609)
+..+...++++.|+...+++..+.+. ....|..|+.+|..+|+++.|+..++
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~lsP~------~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELSPS------EFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCch------hHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 99999999999999999999998876 56699999999999999999986644
No 210
>KOG3081|consensus
Probab=97.93 E-value=0.0013 Score=62.04 Aligned_cols=149 Identities=13% Similarity=0.040 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQ 281 (609)
Q Consensus 202 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 281 (609)
....-|.+|..-|++++|+........+- +...--.++.++.+++-|...+++..++..+.
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~~~lE-----------~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~-------- 170 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLGENLE-----------AAALNVQILLKMHRFDLAEKELKKMQQIDEDA-------- 170 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhccchHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--------
Confidence 44555788899999999998887743321 22333457778888888888888887776542
Q ss_pred HHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCc
Q psy10738 282 ACYSLGNTYTLL----RDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPL 357 (609)
Q Consensus 282 ~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 357 (609)
++..||..|... +.+..|.-+|++.-.- ..........++.++..+|++++|...++.++.-. .
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd------~ 238 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD------A 238 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc------C
Confidence 445565555432 3455565555543321 22345578889999999999999999999998744 4
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 358 GQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 358 ~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
...+++.++.-+-..+|.+.....
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHH
Confidence 557888888888888998755443
No 211
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.92 E-value=6.2e-06 Score=81.86 Aligned_cols=156 Identities=19% Similarity=0.140 Sum_probs=74.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q psy10738 64 SQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRAL 143 (609)
Q Consensus 64 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~ 143 (609)
...|.++...|++++|+..+.+. ...++......+|..+++++.|.+.++.+.+ ..+. ...+.
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~-----------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~----~~eD--~~l~q 168 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG-----------GSLELLALAVQILLKMNRPDLAEKELKNMQQ----IDED--SILTQ 168 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT-----------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC----CSCC--HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc-----------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCc--HHHHH
Confidence 34455555566666666655432 1223344455566666666666665554322 2221 11122
Q ss_pred HHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10738 144 YNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYH 223 (609)
Q Consensus 144 ~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 223 (609)
...+++....|. +.+.+|...|++.... . .....+++.++.++..+|+|++|...+
T Consensus 169 La~awv~l~~g~------------------e~~~~A~y~f~El~~~---~---~~t~~~lng~A~~~l~~~~~~eAe~~L 224 (290)
T PF04733_consen 169 LAEAWVNLATGG------------------EKYQDAFYIFEELSDK---F---GSTPKLLNGLAVCHLQLGHYEEAEELL 224 (290)
T ss_dssp HHHHHHHHHHTT------------------TCCCHHHHHHHHHHCC---S-----SHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHhCc------------------hhHHHHHHHHHHHHhc---c---CCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 222333333332 0055666666553221 1 122345566666666677777776666
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHH
Q psy10738 224 QERLKIAREFGDKAAERRANSNLGNSHIFLGEY-QAASEHYKRT 266 (609)
Q Consensus 224 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a 266 (609)
++++...+.. ..++.|++.+....|+. +.+.+++.+.
T Consensus 225 ~~al~~~~~~------~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 225 EEALEKDPND------PDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHCCC-CCH------HHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHhccCC------HHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 6665432221 22556666666666666 3344444443
No 212
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.92 E-value=0.013 Score=58.24 Aligned_cols=98 Identities=14% Similarity=0.196 Sum_probs=76.9
Q ss_pred HHhcCChHHHHHHHHHHHHh----CCcchhHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHH---c-C----Chhh
Q psy10738 32 LCKAGDCRAGVAFFQAAIQA----GTDDLRTLSAIYSQLGNAYFYLG-DYQKAMQYHKQDLTLARN---M-E----DKLG 98 (609)
Q Consensus 32 ~~~~g~~~~A~~~~~~al~~----~~~~~~~~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~---~-~----d~~~ 98 (609)
..+.|+++.|..++.++-.. .|+....++..+++.|......+ +++.|..++++++++... . . ....
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46789999999999998664 45666778999999999999999 999999999999999644 1 1 1245
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 99 EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEIS 130 (609)
Q Consensus 99 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 130 (609)
...++..++.+|...+.++...+ +.++++..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l 113 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLL 113 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHH
Confidence 67888999999999998765544 34444444
No 213
>KOG4642|consensus
Probab=97.92 E-value=6.2e-05 Score=69.44 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=96.9
Q ss_pred cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCh
Q psy10738 17 DGGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDK 96 (609)
Q Consensus 17 ~~a~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~ 96 (609)
.+...+..+-..|..++....|..|+..|.+||.++|.. +..|.+.+.+|+...+++.+.....+++++ .
T Consensus 5 ~~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~----~~Y~tnralchlk~~~~~~v~~dcrralql------~ 74 (284)
T KOG4642|consen 5 EMSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTV----ASYYTNRALCHLKLKHWEPVEEDCRRALQL------D 74 (284)
T ss_pred ccchHHHHHHhccccccchhhhchHHHHHHHHHhcCCCc----chhhhhHHHHHHHhhhhhhhhhhHHHHHhc------C
Confidence 344445566667999999999999999999999999976 347889999999999999999999999999 8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q psy10738 97 LGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLND 135 (609)
Q Consensus 97 ~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d 135 (609)
++.+.+++.+|........|++|+..+.++..+.+...-
T Consensus 75 ~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~ 113 (284)
T KOG4642|consen 75 PNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPF 113 (284)
T ss_pred hHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999886543
No 214
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00018 Score=69.42 Aligned_cols=111 Identities=20% Similarity=0.223 Sum_probs=93.0
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHh
Q psy10738 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVC 175 (609)
Q Consensus 96 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 175 (609)
+|..++-|..||.+|..+|++..|...|.+|+++.+ .....+..+|.+++...+. .+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g------~n~~~~~g~aeaL~~~a~~-----------------~~ 208 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG------DNPEILLGLAEALYYQAGQ-----------------QM 208 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCC-----------------cc
Confidence 777889999999999999999999999999999987 5566777888877766541 12
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q psy10738 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD 235 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 235 (609)
-.++...+++++.. .+...++.+.||..++..|+|.+|+..++..++..+....
T Consensus 209 ta~a~~ll~~al~~------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 209 TAKARALLRQALAL------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred cHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 57888888888887 6677889999999999999999999999999988776544
No 215
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.87 E-value=0.031 Score=55.49 Aligned_cols=250 Identities=14% Similarity=0.060 Sum_probs=140.7
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHc--CChhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH---cC-----CcHH
Q psy10738 70 YFYLGDYQKAMQYHKQDLTLARNM--EDKLGEAKSSGNLGNTLKVMG-KYDEAMVCCKRHLEISRQ---LN-----DKLS 138 (609)
Q Consensus 70 ~~~~g~~~~A~~~~~~al~~~~~~--~d~~~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~~~---~~-----d~~~ 138 (609)
....|+++.|..++.++-...... ......+..+++.|......+ +++.|..+++++.++... .. ....
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 356899999999999998876421 123456889999999999999 999999999999999744 11 1135
Q ss_pred HHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH-HHhCChHHHHHHHHHHHHHHHHcCCHH
Q psy10738 139 EGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM-KEINDTAAQGRACGNLGNTYYLLGNFK 217 (609)
Q Consensus 139 ~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~ 217 (609)
...++..++.+|...+. ++...+ ...+++.. .+.++++.... ..+ .+....++.+
T Consensus 83 r~~iL~~La~~~l~~~~--------------------~~~~~k-a~~~l~~l~~e~~~~~~~~~--L~l-~il~~~~~~~ 138 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDT--------------------YESVEK-ALNALRLLESEYGNKPEVFL--LKL-EILLKSFDEE 138 (278)
T ss_pred HHHHHHHHHHHHHcCCC--------------------hHHHHH-HHHHHHHHHHhCCCCcHHHH--HHH-HHHhccCChh
Confidence 67788999999999887 332222 22222222 23344443321 122 2222278888
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHH
Q psy10738 218 QAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP 297 (609)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 297 (609)
++.+.+.+.+....-...... .......-+ .......|...+...+...-...............-......++..
T Consensus 139 ~~~~~L~~mi~~~~~~e~~~~---~~l~~i~~l-~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~ 214 (278)
T PF08631_consen 139 EYEEILMRMIRSVDHSESNFD---SILHHIKQL-AEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLS 214 (278)
T ss_pred HHHHHHHHHHHhcccccchHH---HHHHHHHHH-HhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCcccc
Confidence 888888887765432222111 111111111 1223455666666555432222111012222111111112222222
Q ss_pred HH--HHHHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy10738 298 TA--IDYHLRHLIIAQQLMD-------RVGEGRACWSLGNAHAARGNHEKALYFATKHL 347 (609)
Q Consensus 298 ~A--~~~~~~al~~~~~~~~-------~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al 347 (609)
.. ++-....+........ .......+|+.|..+.+.++|+.|..+|+-++
T Consensus 215 ~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 215 SSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred chhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22 3333333332222111 22234567889999999999999999999876
No 216
>KOG3081|consensus
Probab=97.87 E-value=0.0035 Score=59.23 Aligned_cols=247 Identities=14% Similarity=0.040 Sum_probs=146.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
...++..|+|..++..-++.-... .+. .....+.+.|..+|.+...+.-...+- .....+...++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~----e~d~y~~raylAlg~~~~~~~eI~~~~---------~~~lqAvr~~a~ 80 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK-TDV----ELDVYMYRAYLALGQYQIVISEIKEGK---------ATPLQAVRLLAE 80 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc-chh----HHHHHHHHHHHHccccccccccccccc---------CChHHHHHHHHH
Confidence 566778888888887766654433 222 245566777888887765544322211 111233444454
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHH
Q psy10738 109 TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLA 188 (609)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 188 (609)
+...-++.++-+.-..+-+.... . .........-|.+|..-|+ +++|+........
T Consensus 81 ~~~~e~~~~~~~~~l~E~~a~~~--~--~sn~i~~l~aa~i~~~~~~--------------------~deAl~~~~~~~~ 136 (299)
T KOG3081|consen 81 YLELESNKKSILASLYELVADST--D--GSNLIDLLLAAIIYMHDGD--------------------FDEALKALHLGEN 136 (299)
T ss_pred HhhCcchhHHHHHHHHHHHHhhc--c--chhHHHHHHhhHHhhcCCC--------------------hHHHHHHHhccch
Confidence 44444444443333333221111 1 1222345566778888888 9999887766332
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh----CCHHHHHHHHH
Q psy10738 189 LMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL----GEYQAASEHYK 264 (609)
Q Consensus 189 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~ 264 (609)
+ .+...--.++.++.+++-|...+++..++..+. .+..||..++.. +++..|.-+|+
T Consensus 137 l-----------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--------tLtQLA~awv~la~ggek~qdAfyife 197 (299)
T KOG3081|consen 137 L-----------EAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--------TLTQLAQAWVKLATGGEKIQDAFYIFE 197 (299)
T ss_pred H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--------HHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 2 223333456777788888888888877765442 344455555432 34556665555
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy10738 265 RTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFAT 344 (609)
Q Consensus 265 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~ 344 (609)
+.-+. .......+...+.++..+|+|++|...++.++.-..+ ...++.++-.+-...|...++..-+-
T Consensus 198 E~s~k------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~------dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 198 ELSEK------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK------DPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred HHhcc------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC------CHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 43321 1223667788899999999999999999998864333 35577888888888888776655433
No 217
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.0037 Score=59.37 Aligned_cols=233 Identities=13% Similarity=0.018 Sum_probs=159.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLND--KLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d--~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~ 181 (609)
..+++-....+++++|+..|.+.+.---...+ ....-.+..+++.+|...|+ +..-.+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~--------------------~~~l~~ 66 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGD--------------------YCSLGD 66 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCC--------------------cchHHH
Confidence 34566667778888888888887754111111 11344577899999999998 554444
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHH
Q psy10738 182 YYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261 (609)
Q Consensus 182 ~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 261 (609)
......+.......+...-.+...+-..-+....++.-+..+...++.+.+..........-..+..+++..|+|.+|+.
T Consensus 67 ~i~~sre~m~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~Ysdala 146 (421)
T COG5159 67 TITSSREAMEDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALA 146 (421)
T ss_pred HHHhhHHHHHHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 44444444433332222111222222233345667788888888888777655554445566678889999999999999
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHcCChHHHH
Q psy10738 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD-RVGEGRACWSLGNAHAARGNHEKAL 340 (609)
Q Consensus 262 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~La~~~~~~g~~~~A~ 340 (609)
.....+.-..+..+......++..-..+|....+..++..-+..|...+...-- +...+..-..-|.++..-.+|.-|.
T Consensus 147 lIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~ 226 (421)
T COG5159 147 LINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTAS 226 (421)
T ss_pred HHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHH
Confidence 999999988888888888888888889999999999998888887776655432 2333444444466777788999999
Q ss_pred HHHHHHHHHHHHcCCC
Q psy10738 341 YFATKHLEISKQLGDP 356 (609)
Q Consensus 341 ~~~~~al~l~~~~~~~ 356 (609)
.||-+|++-+......
T Consensus 227 SYF~Ea~Egft~l~~d 242 (421)
T COG5159 227 SYFIEALEGFTLLKMD 242 (421)
T ss_pred HHHHHHHhccccccch
Confidence 9999999887666544
No 218
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.86 E-value=0.00016 Score=62.26 Aligned_cols=108 Identities=14% Similarity=0.053 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHH
Q psy10738 21 MCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEA 100 (609)
Q Consensus 21 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~ 100 (609)
+...++..|...+..|+|++|++.|+.+....|..+- ...+...+|.+|+..+++++|+..+++-+++.+. ++...
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y-a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~---hp~vd 84 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY-AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT---HPNVD 84 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CCCcc
Confidence 3467788999999999999999999999998885433 2457889999999999999999999999888544 55667
Q ss_pred HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHHHHH
Q psy10738 101 KSSGNLGNTLKVMGK---------------YDEAMVCCKRHLEISRQ 132 (609)
Q Consensus 101 ~a~~~lg~~~~~~g~---------------~~~A~~~~~~al~l~~~ 132 (609)
.+++..|.++..+.. ...|...|++.+...|.
T Consensus 85 Ya~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~ 131 (142)
T PF13512_consen 85 YAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPN 131 (142)
T ss_pred HHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcC
Confidence 899999999988876 67788888877776663
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=97.83 E-value=0.0003 Score=62.04 Aligned_cols=97 Identities=9% Similarity=0.087 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~ 139 (609)
....+..|.-++..|++++|...|+-.... .+...+.+..||-++..+++|++|+..|..+..+.. ..
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~------~d 104 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIY------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK------ND 104 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc------CC
Confidence 456678899999999999999999987776 677788899999999999999999999999988765 22
Q ss_pred HHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHH
Q psy10738 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLA 188 (609)
Q Consensus 140 ~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 188 (609)
....+..|.+|..+|+ ...|...|+.++.
T Consensus 105 p~p~f~agqC~l~l~~--------------------~~~A~~~f~~a~~ 133 (165)
T PRK15331 105 YRPVFFTGQCQLLMRK--------------------AAKARQCFELVNE 133 (165)
T ss_pred CCccchHHHHHHHhCC--------------------HHHHHHHHHHHHh
Confidence 3457899999999999 9999999988877
No 220
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.80 E-value=0.00023 Score=67.81 Aligned_cols=102 Identities=18% Similarity=0.123 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHH
Q psy10738 243 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRA 322 (609)
Q Consensus 243 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 322 (609)
.++.|.-++..|+|..|...|..-++-++. ....+.++++||.+++.+|+|+.|...|..+.+-. +......++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~---s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~---P~s~KApda 217 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN---STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY---PKSPKAPDA 217 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC---CCCCCChHH
Confidence 566666666777777777777666554443 23346667777777777777777777776665533 333445567
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 323 CWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 323 ~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
++.||.+...+|+.++|...|++.++-+
T Consensus 218 llKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 218 LLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 7777777777777777777777766554
No 221
>KOG2610|consensus
Probab=97.79 E-value=0.011 Score=57.53 Aligned_cols=165 Identities=15% Similarity=0.082 Sum_probs=122.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
+..++..|++.+|...+++.++-.|.|.- ++..--.+++..|+...-...+++.+... ..+.|-...+...++.
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDll----a~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLL----AVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAF 183 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhh----hhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHh
Confidence 45567788889999999999998888743 44445567788888887777777665431 3345666777788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHH
Q psy10738 109 TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLA 188 (609)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 188 (609)
.+...|-|++|.+...+++++.+ ....+...++.++...|+ +.++.++..+.-.
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~------~D~Wa~Ha~aHVlem~~r--------------------~Keg~eFM~~ted 237 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINR------FDCWASHAKAHVLEMNGR--------------------HKEGKEFMYKTED 237 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCC------cchHHHHHHHHHHHhcch--------------------hhhHHHHHHhccc
Confidence 89999999999999999998877 667778888889999998 8888887766544
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10738 189 LMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERL 227 (609)
Q Consensus 189 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 227 (609)
..+.. ......-|...+.+|...+.|+.|++.|..-+
T Consensus 238 ~Wr~s--~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 238 DWRQS--WMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred chhhh--hHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 43311 12223455667888888899999999987644
No 222
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.79 E-value=0.00015 Score=55.74 Aligned_cols=57 Identities=21% Similarity=0.388 Sum_probs=47.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTL 89 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 89 (609)
..++...++|++|+.++++++..+|+++. .+...|.++...|++.+|+..++++++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPE----LWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccch----hhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35678888888888888888888888744 7788888888888888888888888877
No 223
>KOG0551|consensus
Probab=97.78 E-value=0.00017 Score=69.76 Aligned_cols=102 Identities=22% Similarity=0.334 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.+-..|.-+++..+|..|+..|.++|+....|+...+.+|.+.+-+.+.+|+|..|+.-+.+++.+ .|....++
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------~P~h~Ka~ 156 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------KPTHLKAY 156 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------Ccchhhhh
Confidence 344569999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
+.-|.++..+.++.+|..+++..+.+..
T Consensus 157 ~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 157 IRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 9999999999999999999999877654
No 224
>KOG2796|consensus
Probab=97.75 E-value=0.0031 Score=59.30 Aligned_cols=177 Identities=13% Similarity=0.147 Sum_probs=138.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHh------------CCcc-----hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 27 LEGERLCKAGDCRAGVAFFQAAIQA------------GTDD-----LRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTL 89 (609)
Q Consensus 27 ~~g~~~~~~g~~~~A~~~~~~al~~------------~~~~-----~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 89 (609)
+-|++....|+..+.+.-+...... .|+. ......+.+.+..++.-.|+|.-++..+.+.++.
T Consensus 127 lhAe~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~ 206 (366)
T KOG2796|consen 127 LHAELQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKY 206 (366)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHh
Confidence 4467777777777776655544332 1111 1123456777888888999999999999998884
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCc
Q psy10738 90 ARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYP 169 (609)
Q Consensus 90 ~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~ 169 (609)
+++........+|.+....|+.+.|..++++.-+....+.+......+..+.+.+|.-.++
T Consensus 207 -----~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn-------------- 267 (366)
T KOG2796|consen 207 -----YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNN-------------- 267 (366)
T ss_pred -----CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccc--------------
Confidence 3466677888999999999999999999998888777777777777888899999999998
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q psy10738 170 EEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFG 234 (609)
Q Consensus 170 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 234 (609)
|..|...+.+++.. .+..+.+.++.|.|...+|+...|++.++.++...+...
T Consensus 268 ------~a~a~r~~~~i~~~------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 268 ------FAEAHRFFTEILRM------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred ------hHHHHHHHhhcccc------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99999999887765 344566788999999999999999999999988776543
No 225
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.70 E-value=0.0025 Score=56.77 Aligned_cols=161 Identities=15% Similarity=0.132 Sum_probs=112.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHH
Q psy10738 107 GNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQN 186 (609)
Q Consensus 107 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 186 (609)
+......=+.+.+..-..+.+++.+. ..-.+.||+.....|+ +.+|..+|+++
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~ApT-------vqnr~rLa~al~elGr--------------------~~EA~~hy~qa 115 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAIAPT-------VQNRYRLANALAELGR--------------------YHEAVPHYQQA 115 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhhchh-------HHHHHHHHHHHHHhhh--------------------hhhhHHHHHHH
Confidence 33444444555555555555555552 2345678888888898 89999999888
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 187 LALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRT 266 (609)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 266 (609)
+.-. -......+..+++..+..+++..|...+++..+..+....+ .....+|.++...|.+.+|...|+.+
T Consensus 116 lsG~-----fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p----d~~Ll~aR~laa~g~~a~Aesafe~a 186 (251)
T COG4700 116 LSGI-----FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP----DGHLLFARTLAAQGKYADAESAFEVA 186 (251)
T ss_pred hccc-----cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC----CchHHHHHHHHhcCCchhHHHHHHHH
Confidence 7532 22234567788888889999999998888887765443221 25567888899999999999999988
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy10738 267 LVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 310 (609)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 310 (609)
+...+. ..+....+..+.++|+..+|..-+....+..
T Consensus 187 ~~~ypg-------~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 187 ISYYPG-------PQARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred HHhCCC-------HHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 887765 4455556778888888888877666554433
No 226
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.68 E-value=0.0029 Score=57.95 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCC
Q psy10738 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGE 255 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 255 (609)
..+-++-++.-++-++..........++..+|..|...|+++.|++.|.++.+.. .........+.++..+.+..++
T Consensus 12 ~~~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~~~~~id~~l~~irv~i~~~d 88 (177)
T PF10602_consen 12 NAEELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC---TSPGHKIDMCLNVIRVAIFFGD 88 (177)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHHHhCC
Confidence 4444555555555555555566777889999999999999999999999876653 3344455677888888889999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy10738 256 YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 310 (609)
Q Consensus 256 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 310 (609)
+.....++.++..+....++..........-|..+...++|.+|...|-.+....
T Consensus 89 ~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 89 WSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 9999999999888887766655555566666777778888888888887765443
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.68 E-value=0.00016 Score=73.88 Aligned_cols=65 Identities=17% Similarity=0.111 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 59 LSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEA---KSSGNLGNTLKVMGKYDEAMVCCKRHLEI 129 (609)
Q Consensus 59 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l 129 (609)
.+..++++|.+|+..|+|++|+..|++++++ .|... .+|+++|.+|..+|++++|+.++++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4668999999999999999999999999999 56655 45999999999999999999999999986
No 228
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.65 E-value=0.078 Score=54.57 Aligned_cols=129 Identities=12% Similarity=0.049 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHHc-
Q psy10738 196 TAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV-LAQDL- 273 (609)
Q Consensus 196 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~- 273 (609)
....+..+...+.+....|+++.|..++.++.......... ...+....+.+....|+..+|+..++..+. .....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 56677889999999999999999999999887654222211 223667788999999999999999988887 22211
Q ss_pred --------------------------CCcHHHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHhcchhhHHH
Q psy10738 274 --------------------------GDRAVEAQACYSLGNTYTLL------RDYPTAIDYHLRHLIIAQQLMDRVGEGR 321 (609)
Q Consensus 274 --------------------------~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~ 321 (609)
......+.++..+|...... +..++++..|.++..+.+... .
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~------k 293 (352)
T PF02259_consen 220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE------K 293 (352)
T ss_pred ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH------H
Confidence 12244567788888888777 889999999999998876632 3
Q ss_pred HHHHHHHHHHH
Q psy10738 322 ACWSLGNAHAA 332 (609)
Q Consensus 322 ~~~~La~~~~~ 332 (609)
++..+|..+..
T Consensus 294 ~~~~~a~~~~~ 304 (352)
T PF02259_consen 294 AWHSWALFNDK 304 (352)
T ss_pred HHHHHHHHHHH
Confidence 55556555543
No 229
>KOG0545|consensus
Probab=97.60 E-value=0.00082 Score=62.37 Aligned_cols=112 Identities=15% Similarity=0.157 Sum_probs=95.2
Q ss_pred CCcchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHh--------CCcchhH------HHHHHHHHHHHHHHhCCHHHHH
Q psy10738 15 GADGGNMCLELALEGERLCKAGDCRAGVAFFQAAIQA--------GTDDLRT------LSAIYSQLGNAYFYLGDYQKAM 80 (609)
Q Consensus 15 ~~~~a~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~------~a~~~~~lg~~~~~~g~~~~A~ 80 (609)
+.++....-.+-.+|+.+++.|+|.+|...|..|+.. .|.++++ ..-.+.+.+.|+...|+|-+++
T Consensus 171 ddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevl 250 (329)
T KOG0545|consen 171 DDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVL 250 (329)
T ss_pred chHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHH
Confidence 4445555666777899999999999999999999753 4555543 2346788899999999999999
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 81 QYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQ 132 (609)
Q Consensus 81 ~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 132 (609)
+.+...+.. .+....+|+..|.++...-+..+|..-+.+++++.+.
T Consensus 251 eh~seiL~~------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 251 EHCSEILRH------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHHHHhc------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 999999998 8889999999999999999999999999999998774
No 230
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.59 E-value=0.0033 Score=56.10 Aligned_cols=134 Identities=15% Similarity=0.085 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQ 281 (609)
Q Consensus 202 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 281 (609)
-.+.||+....+|++.+|..+|++++.= .-......+..+++..+..+++..|...+++..+..+.... +.
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG-----~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~----pd 161 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSG-----IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS----PD 161 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhcc-----ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC----CC
Confidence 4567899999999999999999998752 11112346788999999999999999999988877654433 34
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy10738 282 ACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISK 351 (609)
Q Consensus 282 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~ 351 (609)
....+|.++...|.+.+|...|+.++...+.. .+....+..+.++|+..+|..-+....+-..
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-------~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~ 224 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISYYPGP-------QARIYYAEMLAKQGRLREANAQYVAVVDTAK 224 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-------HHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 55678999999999999999999999876642 3444567888899988888877666555443
No 231
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.58 E-value=0.00086 Score=54.44 Aligned_cols=81 Identities=25% Similarity=0.213 Sum_probs=56.6
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHhcchh---hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q psy10738 291 TLLRDYPTAIDYHLRHLIIAQQLMDRV---GEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVT 367 (609)
Q Consensus 291 ~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la 367 (609)
...|+|..|++.+.+............ ....+..++|.++...|++++|+..+++|+.++++.++......++..+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~ 88 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLA 88 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 456777777777777776666554433 44556677777777778888888888888887777777777777777776
Q ss_pred HHHH
Q psy10738 368 DLRK 371 (609)
Q Consensus 368 ~l~~ 371 (609)
.+..
T Consensus 89 ~l~~ 92 (94)
T PF12862_consen 89 NLLK 92 (94)
T ss_pred HHhh
Confidence 6543
No 232
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.56 E-value=0.0029 Score=57.90 Aligned_cols=130 Identities=16% Similarity=0.126 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHH
Q psy10738 218 QAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP 297 (609)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 297 (609)
+-++-++.-++-++.+........++..+|..|...|+++.|++.|.++.+.. .........+..+..+....+++.
T Consensus 14 ~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~~~~~id~~l~~irv~i~~~d~~ 90 (177)
T PF10602_consen 14 EELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC---TSPGHKIDMCLNVIRVAIFFGDWS 90 (177)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHHHhCCHH
Confidence 34455555566666666677778899999999999999999999999977654 334446778888999999999999
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 298 TAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 298 ~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
.+..++.++-.+....++..........-|..+...++|.+|...|-.+..-+
T Consensus 91 ~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 91 HVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 99999999999988877766666677777888889999999999888776544
No 233
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.55 E-value=0.00028 Score=54.24 Aligned_cols=60 Identities=27% Similarity=0.392 Sum_probs=55.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 66 LGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 66 lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
|..+|...+++++|+.++++++.+ .|.....+...|.++...|++.+|+..++++++..+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 356889999999999999999999 788899999999999999999999999999998776
No 234
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.53 E-value=0.00021 Score=54.06 Aligned_cols=55 Identities=24% Similarity=0.301 Sum_probs=49.8
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 71 FYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 71 ~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
+..|++++|+..|++++.. .|....+++.+|.+|...|++++|...+++++...+
T Consensus 2 l~~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 5689999999999999999 888899999999999999999999999999887665
No 235
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.50 E-value=0.018 Score=47.41 Aligned_cols=112 Identities=17% Similarity=0.117 Sum_probs=80.3
Q ss_pred HHHHHHH--HHHHhCCHHHHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q psy10738 242 ANSNLGN--SHIFLGEYQAASEHYKRTLVLAQDLGD------RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 313 (609)
Q Consensus 242 ~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 313 (609)
+|..|+. -.+.-|-|++|..-+.+++++...+.. .-..+.++..|+.++..+|+|++++....+++..+..-
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 4444433 345567888888888888888776532 22356778889999999999999999999999888776
Q ss_pred cc-----hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHc
Q psy10738 314 MD-----RVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQL 353 (609)
Q Consensus 314 ~~-----~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~ 353 (609)
+. -.....+.++.|..+..+|+.++|+..|+.+-++..+-
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER 133 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAER 133 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 54 12234456778889999999999999999999987654
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.49 E-value=0.00025 Score=72.63 Aligned_cols=71 Identities=20% Similarity=0.186 Sum_probs=62.4
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHh
Q psy10738 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVC 175 (609)
Q Consensus 96 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 175 (609)
.+..+.+++++|.+|...|+|++|+.+|++++++.+.. .....+++++|.+|..+|+
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~---aeA~~A~yNLAcaya~LGr-------------------- 127 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNP---DEAQAAYYNKACCHAYREE-------------------- 127 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHHHHHcCC--------------------
Confidence 56778999999999999999999999999999997721 1222579999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy10738 176 LQEAIKYYEQNLAL 189 (609)
Q Consensus 176 ~~~A~~~~~~al~~ 189 (609)
+++|+.++++++++
T Consensus 128 ~dEAla~LrrALel 141 (453)
T PLN03098 128 GKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999986
No 237
>KOG4648|consensus
Probab=97.48 E-value=0.00035 Score=67.78 Aligned_cols=96 Identities=20% Similarity=0.193 Sum_probs=88.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q psy10738 64 SQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRAL 143 (609)
Q Consensus 64 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~ 143 (609)
-..|+-|+.+|.|++|+.+|.+++.. .+..+..+.+.+..|.....|..|..-|..|+.+.. ....+|
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~------~Y~KAY 168 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAV------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK------LYVKAY 168 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhcc------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH------HHHHHH
Confidence 46799999999999999999999998 787888999999999999999999999999999988 788899
Q ss_pred HHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHH
Q psy10738 144 YNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMK 191 (609)
Q Consensus 144 ~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 191 (609)
...|..-..+|. ..+|.+-++.++.+-.
T Consensus 169 SRR~~AR~~Lg~--------------------~~EAKkD~E~vL~LEP 196 (536)
T KOG4648|consen 169 SRRMQARESLGN--------------------NMEAKKDCETVLALEP 196 (536)
T ss_pred HHHHHHHHHHhh--------------------HHHHHHhHHHHHhhCc
Confidence 999999999999 9999999999988743
No 238
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.48 E-value=0.0025 Score=51.69 Aligned_cols=81 Identities=20% Similarity=0.131 Sum_probs=57.7
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCcH---HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q psy10738 250 HIFLGEYQAASEHYKRTLVLAQDLGDRA---VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSL 326 (609)
Q Consensus 250 ~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~L 326 (609)
.+..|+|..|.+.+.+..+......... ....++.++|.++...|++++|+..+++++.++++.+|......++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL 87 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 3456777777777777777766654433 4555677788888888888888888888888888888777766666666
Q ss_pred HHHH
Q psy10738 327 GNAH 330 (609)
Q Consensus 327 a~~~ 330 (609)
..+.
T Consensus 88 ~~l~ 91 (94)
T PF12862_consen 88 ANLL 91 (94)
T ss_pred HHHh
Confidence 6553
No 239
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=97.42 E-value=0.11 Score=50.53 Aligned_cols=84 Identities=14% Similarity=0.093 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHH
Q psy10738 260 SEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKA 339 (609)
Q Consensus 260 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 339 (609)
++.+.+|+..+...+...........+|..|...|++++|+.+|+.+.....+-+-......++..+..|+...|+.+..
T Consensus 158 I~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~ 237 (247)
T PF11817_consen 158 IELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDY 237 (247)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 33344444444444444444445555555555555555555555555555555454444555555555555555555554
Q ss_pred HHHH
Q psy10738 340 LYFA 343 (609)
Q Consensus 340 ~~~~ 343 (609)
+.+.
T Consensus 238 l~~~ 241 (247)
T PF11817_consen 238 LTTS 241 (247)
T ss_pred HHHH
Confidence 4443
No 240
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.42 E-value=0.018 Score=47.36 Aligned_cols=115 Identities=19% Similarity=0.272 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHHHHHcCC------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 59 LSAIYSQLGNAY--FYLGDYQKAMQYHKQDLTLARNMED------KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEIS 130 (609)
Q Consensus 59 ~a~~~~~lg~~~--~~~g~~~~A~~~~~~al~~~~~~~d------~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 130 (609)
.+.+|..|+..- ..-|-|++|...++++++..+.+.. .-..+.++..|+..+..+|+|++++....+++..+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 345666665544 4458899999999999999887743 22346788889999999999999999999999998
Q ss_pred HHcCCc-----HHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh
Q psy10738 131 RQLNDK-----LSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI 193 (609)
Q Consensus 131 ~~~~d~-----~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 193 (609)
..-+.. ...+.+.++.|..+...|. .++|+..|+.+-++..+.
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr--------------------~~eA~~~fr~agEMiaER 133 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGR--------------------KEEALKEFRMAGEMIAER 133 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT---------------------HHHHHHHHHHHHHHHHH-
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHHHHHHH
Confidence 765532 2456677889999999999 999999999998887654
No 241
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.40 E-value=0.0088 Score=61.62 Aligned_cols=210 Identities=18% Similarity=0.112 Sum_probs=125.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
+-.-.+...+...-++...+|+++.+ ..+.+|..|+.-... ...+|..+|++
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~p------dCAdAYILLAEEeA~----------------------Ti~Eae~l~rq 225 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINP------DCADAYILLAEEEAS----------------------TIVEAEELLRQ 225 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhh------hhhHHHhhccccccc----------------------CHHHHHHHHHH
Confidence 33444566777778888888888877 455555555431111 14555555555
Q ss_pred HHHHHHHh-------C------------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy10738 186 NLALMKEI-------N------------DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNL 246 (609)
Q Consensus 186 al~~~~~~-------~------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 246 (609)
+++..+.. . +......+...+|.+..++|+.++|++.++..++..+.. ....++.+|
T Consensus 226 AvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~----~~l~IrenL 301 (539)
T PF04184_consen 226 AVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL----DNLNIRENL 301 (539)
T ss_pred HHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc----chhhHHHHH
Confidence 55544332 0 111124566789999999999999999999988765421 223488999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-hCC---------------HHHHHHHHHHHHHHH
Q psy10738 247 GNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL-LRD---------------YPTAIDYHLRHLIIA 310 (609)
Q Consensus 247 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~ 310 (609)
..+++..+.|.++...+.+--++ .-+ ..+..++.-|.+-.+ .++ -..|.+.+.+|++..
T Consensus 302 ie~LLelq~Yad~q~lL~kYdDi----~lp-kSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefN 376 (539)
T PF04184_consen 302 IEALLELQAYADVQALLAKYDDI----SLP-KSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFN 376 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHhccc----cCC-chHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999998888764322 111 123344443333221 222 123566777777766
Q ss_pred HHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHc
Q psy10738 311 QQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQL 353 (609)
Q Consensus 311 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~ 353 (609)
+...........+..--.-+.+.|+ .+|+.|.--++...+.+
T Consensus 377 PHVp~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~v 418 (539)
T PF04184_consen 377 PHVPKYLLEMKSLILPPEHILKRGD-SEAIAYAFFHLQHWKRV 418 (539)
T ss_pred CCCchhhhccCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhcC
Confidence 5543311111111111234556675 89999999998888654
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.39 E-value=0.015 Score=62.15 Aligned_cols=109 Identities=16% Similarity=0.091 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc
Q psy10738 75 DYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKG 154 (609)
Q Consensus 75 ~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g 154 (609)
+.+.|.+.+...... .|.-+..++..|.++...|+.++|+..+++++...... +.....+++.+|.++..++
T Consensus 248 ~~~~a~~lL~~~~~~------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~--~Ql~~l~~~El~w~~~~~~ 319 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW--KQLHHLCYFELAWCHMFQH 319 (468)
T ss_pred CHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH--HhHHHHHHHHHHHHHHHHc
Confidence 344455555555444 45555666666777777777777777777666322221 1233455666777777777
Q ss_pred cccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCH
Q psy10738 155 KAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNF 216 (609)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 216 (609)
+ |++|..++....+. +....+...+..|.++...|+.
T Consensus 320 ~--------------------w~~A~~~f~~L~~~-----s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 320 D--------------------WEEAAEYFLRLLKE-----SKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred h--------------------HHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHhhccc
Confidence 6 67776666655543 1233455555666666666666
No 243
>KOG2610|consensus
Probab=97.37 E-value=0.016 Score=56.50 Aligned_cols=161 Identities=13% Similarity=-0.040 Sum_probs=85.4
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q psy10738 69 AYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148 (609)
Q Consensus 69 ~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~ 148 (609)
+.+..|++.+|...+.+.++- .|....++..--..+..+|+...-...+++.+... ..+.+....+...++.
T Consensus 112 i~~~~g~~h~a~~~wdklL~d------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDD------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAF 183 (491)
T ss_pred HhhccccccHHHHHHHHHHHh------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHh
Confidence 334455555555555555544 44444444444455555666655555555443221 2233344555555566
Q ss_pred HHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10738 149 VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLK 228 (609)
Q Consensus 149 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 228 (609)
.+...|- |++|.+...+++++ ++...++...++.++...|++.++.++..+.-.
T Consensus 184 gL~E~g~--------------------y~dAEk~A~ralqi------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted 237 (491)
T KOG2610|consen 184 GLEECGI--------------------YDDAEKQADRALQI------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTED 237 (491)
T ss_pred hHHHhcc--------------------chhHHHHHHhhccC------CCcchHHHHHHHHHHHhcchhhhHHHHHHhccc
Confidence 6666666 66666666666665 344455556666666666666666666655433
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 229 IAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR 265 (609)
Q Consensus 229 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 265 (609)
..+.. ......-|...|.+|+..+.|+.|++.|..
T Consensus 238 ~Wr~s--~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 238 DWRQS--WMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred chhhh--hHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 33211 111123344455566666666666666654
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.37 E-value=0.0017 Score=56.08 Aligned_cols=106 Identities=16% Similarity=0.081 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHH
Q psy10738 201 RACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA 280 (609)
Q Consensus 201 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 280 (609)
..++.-|...+..|+|++|++.++....-.+. ......+...+|.+|+..+++++|+..+++-+++.|...+ ..
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~---g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~---vd 84 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPF---GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN---VD 84 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC---cc
Confidence 45677788888899999999988876654433 3334458888999999999999999999999988876543 46
Q ss_pred HHHHHHHHHHHHhCC---------------HHHHHHHHHHHHHHHHH
Q psy10738 281 QACYSLGNTYTLLRD---------------YPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 281 ~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~~~~ 312 (609)
.+++..|.++..+.. ..+|...|++.+...++
T Consensus 85 Ya~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~ 131 (142)
T PF13512_consen 85 YAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPN 131 (142)
T ss_pred HHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcC
Confidence 677888888777665 55566666555554443
No 245
>KOG4322|consensus
Probab=97.36 E-value=0.11 Score=52.70 Aligned_cols=191 Identities=12% Similarity=-0.017 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHH
Q psy10738 138 SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFK 217 (609)
Q Consensus 138 ~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 217 (609)
......+..+.++....+ +..|...+.+..-.............++..++.++..-+..-
T Consensus 271 ~svE~l~R~A~il~A~~q--------------------~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~ 330 (482)
T KOG4322|consen 271 QSVENLCRFAHILHADEQ--------------------VSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTAC 330 (482)
T ss_pred hhHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCch
Confidence 445666678888888888 888888888877666666666677778888888888888888
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH------H
Q psy10738 218 QAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY------T 291 (609)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~------~ 291 (609)
.+..+.-.++....+.......+..-.+++..+..+|-.+.|...+..++......+.-...+.++...++++ .
T Consensus 331 l~lplaL~~~~~~sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~ 410 (482)
T KOG4322|consen 331 LNLPLALMFEFKRSEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC 410 (482)
T ss_pred hhHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh
Confidence 8888888888888887777777778888899999999999999999998887765544333333333222222 1
Q ss_pred HhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHH---HHHHHHHHHH
Q psy10738 292 LLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEK---ALYFATKHLE 348 (609)
Q Consensus 292 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~---A~~~~~~al~ 348 (609)
...+.+.+..++++|-.+..+++-......+.+.++..|-..|+.++ +...|+++..
T Consensus 411 ~~e~ld~~~~~L~~A~~~f~kL~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 411 ANESLDGFPRYLDLAQSIFYKLGCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred hhhhHHhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 45577888888999888888888888888888999999999888654 4445555544
No 246
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34 E-value=0.034 Score=50.39 Aligned_cols=137 Identities=18% Similarity=0.157 Sum_probs=99.0
Q ss_pred HHHHHHHHHcCCHH---HHHHHHHHHHHHHHH---------------hCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 204 GNLGNTYYLLGNFK---QAIYYHQERLKIARE---------------FGDKAAERRANSNLGNSHIFLGEYQAASEHYKR 265 (609)
Q Consensus 204 ~~lg~~~~~~g~~~---~A~~~~~~al~~~~~---------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 265 (609)
...|+-|+...+.+ +|-..|+++++.... ++....-..+...++..+...|++++|+..++.
T Consensus 35 ~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~ 114 (207)
T COG2976 35 GLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQ 114 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 34456666555444 666677776655422 112222334566788899999999999999998
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy10738 266 TLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATK 345 (609)
Q Consensus 266 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~ 345 (609)
++.... |......+-..||.+...+|.+++|+..+.. ..+....+......|.++...|+.++|+..|++
T Consensus 115 ~l~~t~---De~lk~l~~lRLArvq~q~~k~D~AL~~L~t-------~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~k 184 (207)
T COG2976 115 ALAQTK---DENLKALAALRLARVQLQQKKADAALKTLDT-------IKEESWAAIVAELRGDILLAKGDKQEARAAYEK 184 (207)
T ss_pred HHccch---hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc-------cccccHHHHHHHHhhhHHHHcCchHHHHHHHHH
Confidence 885443 3344566778999999999999999877653 333444556677889999999999999999999
Q ss_pred HHHHH
Q psy10738 346 HLEIS 350 (609)
Q Consensus 346 al~l~ 350 (609)
+++..
T Consensus 185 Al~~~ 189 (207)
T COG2976 185 ALESD 189 (207)
T ss_pred HHHcc
Confidence 99875
No 247
>KOG3783|consensus
Probab=97.33 E-value=0.24 Score=51.88 Aligned_cols=78 Identities=17% Similarity=0.010 Sum_probs=64.2
Q ss_pred cCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HHHhcchhhHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHH
Q psy10738 273 LGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII-AQQLMDRVGEGRACWSLGNAHAARGN-HEKALYFATKHLEIS 350 (609)
Q Consensus 273 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~La~~~~~~g~-~~~A~~~~~~al~l~ 350 (609)
..+......-+..+|.++..+|+...|..+|...++- .....+.+....+++.+|.+|..+|. ..++..++.+|-+..
T Consensus 442 ~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 442 IDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 3455556777788899999999999999999987754 23345677888999999999999999 999999999988765
No 248
>KOG0551|consensus
Probab=97.33 E-value=0.0022 Score=62.37 Aligned_cols=127 Identities=19% Similarity=0.252 Sum_probs=106.4
Q ss_pred cCChHHHHHHHHHHHHh-CCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q psy10738 35 AGDCRAGVAFFQAAIQA-GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVM 113 (609)
Q Consensus 35 ~g~~~~A~~~~~~al~~-~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~ 113 (609)
.|++..-...++..... ..+++...+.-|-.-|+-|+...+|..|+..|.+++.. +.+|+...+..|.|.|-+....
T Consensus 55 ~gd~~~~~~~LqslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~D~dlnavLY~NRAAa~~~l 132 (390)
T KOG0551|consen 55 EGDPNPDNVCLQSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCADPDLNAVLYTNRAAAQLYL 132 (390)
T ss_pred CCCCCccHHHHHHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCCCccHHHHHHhhHHHHHHHH
Confidence 35554445555544443 33566678888999999999999999999999998765 7788888999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 114 GKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 114 g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
|+|..|+.-+.+++.+.+ ....+++.-|.++..+.. +..|..+.+..+.+
T Consensus 133 ~NyRs~l~Dcs~al~~~P------~h~Ka~~R~Akc~~eLe~--------------------~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 133 GNYRSALNDCSAALKLKP------THLKAYIRGAKCLLELER--------------------FAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHHHHHHHHhcCc------chhhhhhhhhHHHHHHHH--------------------HHHHHHHHhhhhhh
Confidence 999999999999999877 677899999999999999 99999998887665
No 249
>KOG2053|consensus
Probab=97.31 E-value=0.16 Score=56.03 Aligned_cols=212 Identities=13% Similarity=0.035 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
+..+++|..+.+.|.+++|..+++..-...++|.. .+..+-.+|..+|++++|..+|++++.. .|. -..
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~----tLq~l~~~y~d~~~~d~~~~~Ye~~~~~------~P~-eel 112 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDL----TLQFLQNVYRDLGKLDEAVHLYERANQK------YPS-EEL 112 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchH----HHHHHHHHHHHHhhhhHHHHHHHHHHhh------CCc-HHH
Confidence 55677788899999999999777666555555533 5667788899999999999999998887 454 556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 182 (609)
++.+-.+|.+.+.|.+-.+. ++++++..+..... .|..+..+...... .++... ..-..-|...
T Consensus 113 l~~lFmayvR~~~yk~qQka---a~~LyK~~pk~~yy--fWsV~Slilqs~~~-------~~~~~~----~i~l~LA~~m 176 (932)
T KOG2053|consen 113 LYHLFMAYVREKSYKKQQKA---ALQLYKNFPKRAYY--FWSVISLILQSIFS-------ENELLD----PILLALAEKM 176 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHhCCcccch--HHHHHHHHHHhccC-------Cccccc----chhHHHHHHH
Confidence 66666777777777654433 33344433332221 22222222222222 000000 1112233333
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Q psy10738 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEH 262 (609)
Q Consensus 183 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 262 (609)
.++.++.- |.-...+.+... -.+...+|++++|.+.+..-+.-.....+. .........+...++|.+-.+.
T Consensus 177 ~~~~l~~~---gk~~s~aE~~Ly-l~iL~~~~k~~eal~~l~~~la~~l~~~~~----~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 177 VQKLLEKK---GKIESEAEIILY-LLILELQGKYQEALEFLAITLAEKLTSANL----YLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred HHHHhccC---CccchHHHHHHH-HHHHHhcccHHHHHHHHHHHHHHhccccch----HHHHHHHHHHHHhcChHHHHHH
Confidence 33333221 111122222221 234567889999999884432211111110 1222334555666777766666
Q ss_pred HHHHHHH
Q psy10738 263 YKRTLVL 269 (609)
Q Consensus 263 ~~~al~~ 269 (609)
..+.+..
T Consensus 249 ~~~Ll~k 255 (932)
T KOG2053|consen 249 SSRLLEK 255 (932)
T ss_pred HHHHHHh
Confidence 5555543
No 250
>KOG2053|consensus
Probab=97.29 E-value=0.12 Score=56.99 Aligned_cols=230 Identities=17% Similarity=0.096 Sum_probs=136.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q psy10738 30 ERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNT 109 (609)
Q Consensus 30 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~ 109 (609)
.-....+++.+|.....+.++..|+.+- +...-|..+.++|..++|..+++..-.. ....-..+..+-.+
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~----a~vLkaLsl~r~gk~~ea~~~Le~~~~~------~~~D~~tLq~l~~~ 86 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNALY----AKVLKALSLFRLGKGDEALKLLEALYGL------KGTDDLTLQFLQNV 86 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcHH----HHHHHHHHHHHhcCchhHHHHHhhhccC------CCCchHHHHHHHHH
Confidence 3456778999999999999999998643 4455677889999999999666543332 22245567788899
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 110 LKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 110 ~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
|..+|++++|..+|++++...+. -..++.+-.+|.+.+. |.+-. +.++++
T Consensus 87 y~d~~~~d~~~~~Ye~~~~~~P~-------eell~~lFmayvR~~~--------------------yk~qQ---kaa~~L 136 (932)
T KOG2053|consen 87 YRDLGKLDEAVHLYERANQKYPS-------EELLYHLFMAYVREKS--------------------YKKQQ---KAALQL 136 (932)
T ss_pred HHHHhhhhHHHHHHHHHHhhCCc-------HHHHHHHHHHHHHHHH--------------------HHHHH---HHHHHH
Confidence 99999999999999999988773 3344555556666665 44332 234555
Q ss_pred HHHhCChHHHHHHHHHHHHHHHHcCCHHHHHH---------HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHH
Q psy10738 190 MKEINDTAAQGRACGNLGNTYYLLGNFKQAIY---------YHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAAS 260 (609)
Q Consensus 190 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~---------~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 260 (609)
++..+..+.. .|..+..+.......+++.. ..++.++. .|.....+.+.. .-.++..+|++++|.
T Consensus 137 yK~~pk~~yy--fWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~---~gk~~s~aE~~L-yl~iL~~~~k~~eal 210 (932)
T KOG2053|consen 137 YKNFPKRAYY--FWSVISLILQSIFSENELLDPILLALAEKMVQKLLEK---KGKIESEAEIIL-YLLILELQGKYQEAL 210 (932)
T ss_pred HHhCCcccch--HHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhcc---CCccchHHHHHH-HHHHHHhcccHHHHH
Confidence 5555554433 33344444444444444333 22222221 111111222222 223556788999999
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 261 EHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 309 (609)
Q Consensus 261 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 309 (609)
+.+..-+.-.....+ ...-..-...+...+++.+-.+...+.+..
T Consensus 211 ~~l~~~la~~l~~~~----~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 211 EFLAITLAEKLTSAN----LYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHHHHHhccccc----hHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 988443321111111 112223345666677777766666665543
No 251
>KOG4322|consensus
Probab=97.25 E-value=0.13 Score=52.03 Aligned_cols=194 Identities=10% Similarity=-0.012 Sum_probs=149.9
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHh
Q psy10738 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVC 175 (609)
Q Consensus 96 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 175 (609)
-....+..+..+.++....++..|...+.+..-......+......++..++.++..-+.
T Consensus 269 ~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~-------------------- 328 (482)
T KOG4322|consen 269 YQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDT-------------------- 328 (482)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCC--------------------
Confidence 344567778899999999999999999999887776666666777788888888887776
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH----
Q psy10738 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHI---- 251 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~---- 251 (609)
--.+..+.-.++....+...+...+.+-.+++..+..+|-.+.|+..+..++....-.+.-...++++...++++.
T Consensus 329 a~l~lplaL~~~~~~sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~ 408 (482)
T KOG4322|consen 329 ACLNLPLALMFEFKRSEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFAL 408 (482)
T ss_pred chhhHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchh
Confidence 6667777777777777777777777888899999999999999999999999887766654444444333333322
Q ss_pred --HhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHH
Q psy10738 252 --FLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT---AIDYHLRHLII 309 (609)
Q Consensus 252 --~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~ 309 (609)
...+.+.+..++++|-.+..+.+-......+.+-++..|-..|+.++ +...|+++...
T Consensus 409 s~~~e~ld~~~~~L~~A~~~f~kL~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~~ 471 (482)
T KOG4322|consen 409 SCANESLDGFPRYLDLAQSIFYKLGCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWRY 471 (482)
T ss_pred hhhhhhHHhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHh
Confidence 45678889999999999999998888888999999999999998654 44455555443
No 252
>KOG3783|consensus
Probab=97.20 E-value=0.17 Score=52.96 Aligned_cols=246 Identities=12% Similarity=-0.025 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHH
Q psy10738 40 AGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEA 119 (609)
Q Consensus 40 ~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A 119 (609)
...+.+.......|.+.- ....-+..+...|+.+.|+..++.++.. + -.......++.+|+++..+.+|..|
T Consensus 251 ~~~~~Ll~~~~~~p~ga~----wll~~ar~l~~~g~~eaa~~~~~~~v~~-~---~kQ~~~l~~fE~aw~~v~~~~~~~a 322 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGAL----WLLMEARILSIKGNSEAAIDMESLSIPI-R---MKQVKSLMVFERAWLSVGQHQYSRA 322 (546)
T ss_pred HHHHHhHHHHHhCCCCcc----HHHHHHHHHHHcccHHHHHHHHHhcccH-H---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445565532 4455677777778888888888888772 1 1344566788889999999999999
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhC-----
Q psy10738 120 MVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIN----- 194 (609)
Q Consensus 120 ~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----- 194 (609)
..++....+... +..+..-+..|.|+...+... .....+-++|..+++....+....+
T Consensus 323 ad~~~~L~desd-----WS~a~Y~Yfa~cc~l~~~~~~------------q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~ 385 (546)
T KOG3783|consen 323 ADSFDLLRDESD-----WSHAFYTYFAGCCLLQNWEVN------------QGAGGNEEKAQLYFKVGEELLANAGKNLPL 385 (546)
T ss_pred hhHHHHHHhhhh-----hhHHHHHHHHHHHHhccHHHH------------HhcccchhHHHHHHHHHHHHHHhccccCch
Confidence 999998888876 222322233334443322200 0000013333333333333332210
Q ss_pred ------------ChH----HH--HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC
Q psy10738 195 ------------DTA----AQ--GRACGNLGNTYYLL--GNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG 254 (609)
Q Consensus 195 ------------~~~----~~--~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 254 (609)
... .. +.-++.++.++... ...++.. -+ .+-...+...+......-+..+|.++..+|
T Consensus 386 E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~-~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg 463 (546)
T KOG3783|consen 386 EKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE-KM-RAELENPKIDDSDDEGLKYLLKGVILRNLG 463 (546)
T ss_pred hHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHH-HH-HHHHhccCCCCchHHHHHHHHHHHHHHHcC
Confidence 000 00 00112222222111 1122222 11 111112233456666678888999999999
Q ss_pred CHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHH
Q psy10738 255 EYQAASEHYKRTLVLA-QDLGDRAVEAQACYSLGNTYTLLRD-YPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 255 ~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~ 312 (609)
+...|..++...++-. ....+.+..+.+++.+|.+|..+|. ..+|..++.+|-+...+
T Consensus 464 ~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 464 DSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred CHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 9999999999887543 3346788889999999999999999 99999999998876543
No 253
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.19 E-value=0.0038 Score=55.76 Aligned_cols=84 Identities=17% Similarity=0.129 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q psy10738 38 CRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGD----------YQKAMQYHKQDLTLARNMEDKLGEAKSSGNLG 107 (609)
Q Consensus 38 ~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg 107 (609)
|+.|.+.++.....+|.|.+ .+++.|.++..+.+ +++|+.-|++|+.+ .|....+++++|
T Consensus 7 FE~ark~aea~y~~nP~Dad----nL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I------~P~~hdAlw~lG 76 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDAD----NLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI------NPNKHDALWCLG 76 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HH----HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-------TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHH----HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc------CCchHHHHHHHH
Confidence 67889999999999998854 66666666665543 45566666666666 788889999999
Q ss_pred HHHHHcCC----HHHHHHHHHHHHHHHH
Q psy10738 108 NTLKVMGK----YDEAMVCCKRHLEISR 131 (609)
Q Consensus 108 ~~~~~~g~----~~~A~~~~~~al~l~~ 131 (609)
++|...+. ..+|..+|++|.+.+.
T Consensus 77 nA~ts~A~l~~d~~~A~~~F~kA~~~Fq 104 (186)
T PF06552_consen 77 NAYTSLAFLTPDTAEAEEYFEKATEYFQ 104 (186)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 99987654 3345555555544433
No 254
>KOG2581|consensus
Probab=97.15 E-value=0.34 Score=48.77 Aligned_cols=250 Identities=16% Similarity=0.084 Sum_probs=150.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcc-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc-----------C-
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGTDD-LRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM-----------E- 94 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----------~- 94 (609)
+-......|-+.+-..+.-++++.-|.- ...-...++.+...++-.|. ++...+.+-+....+. .
T Consensus 36 e~~~~i~kg~~tke~r~I~R~lr~l~~~r~kln~~vL~~~v~~~~~~~s--e~~~~~l~fv~~~~~~~~p~~~~s~~t~~ 113 (493)
T KOG2581|consen 36 EQLAQIDKGVYTKEPRFILRALRLLPSTRRKLNGAVLYKLVSSLLSSGS--EAMDRLLRFVPAFDKNIKPLDTDSPNTQS 113 (493)
T ss_pred HHHHHHhccccccchHHHHHHHHhhhhhHhhhhHHHHHHHHHHHcCCch--HHHHHHHhhcccccccCCccccccccccc
Confidence 3444555665665666666777665531 12223344444444444442 4444333322211110 0
Q ss_pred -----ChhhHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHHHHcccccccCCCC
Q psy10738 95 -----DKLGEAKSSGNLG--NTLKVMGKYDEAMVCCKRHLEISRQLNDK----LSEGRALYNLGNVYHAKGKAIGKVGQQ 163 (609)
Q Consensus 95 -----d~~~~~~a~~~lg--~~~~~~g~~~~A~~~~~~al~l~~~~~d~----~~~~~~~~~lg~~~~~~g~~~~~~~~~ 163 (609)
.-+....+|..+- ..++...++.+|..+-...+.-.. ..+. ...+..|+.+..+|...|+
T Consensus 114 a~~~k~~~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~-~~nrRtlD~i~ak~~fy~~l~~E~~~~-------- 184 (493)
T KOG2581|consen 114 ALKRKPLPAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASIS-IQNRRTLDLIAAKLYFYLYLSYELEGR-------- 184 (493)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHhhcc--------
Confidence 0011234444333 233445788888888776654322 1221 2446788888999999888
Q ss_pred CCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHH
Q psy10738 164 DPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRAN 243 (609)
Q Consensus 164 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 243 (609)
...-...+..-+..+.-..+....+...+.|-..|...+.|+.|.....++. .++.......++..
T Consensus 185 ------------l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~ 250 (493)
T KOG2581|consen 185 ------------LADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYL 250 (493)
T ss_pred ------------hHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHH
Confidence 7777777766666655555777778888888889999999999988877653 23333344667788
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHH
Q psy10738 244 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302 (609)
Q Consensus 244 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 302 (609)
+.+|.+..-+++|..|.+++-.|+..++.....-..-.+...+-.+-..+|++.+-.-+
T Consensus 251 yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F 309 (493)
T KOG2581|consen 251 YYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVF 309 (493)
T ss_pred HHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhh
Confidence 99999999999999999999999998886322222223333334445567777654433
No 255
>KOG4642|consensus
Probab=97.10 E-value=0.0013 Score=60.93 Aligned_cols=101 Identities=20% Similarity=0.249 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHH
Q psy10738 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRA 142 (609)
Q Consensus 63 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~ 142 (609)
+..-|+.++.-..|+.|+..|.+++.+ .|..+..+.+.+.+|....+++.+..-+.+++++.+ ..+.+
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~------N~vk~ 80 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICI------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP------NLVKA 80 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhc------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh------HHHHH
Confidence 445677888889999999999999999 888889999999999999999999999999999988 88899
Q ss_pred HHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCC
Q psy10738 143 LYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIND 195 (609)
Q Consensus 143 ~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 195 (609)
++.+|........ |++|+..+.++..+.+...-
T Consensus 81 h~flg~~~l~s~~--------------------~~eaI~~Lqra~sl~r~~~~ 113 (284)
T KOG4642|consen 81 HYFLGQWLLQSKG--------------------YDEAIKVLQRAYSLLREQPF 113 (284)
T ss_pred HHHHHHHHHhhcc--------------------ccHHHHHHHHHHHHHhcCCC
Confidence 9999999999998 99999999999998877643
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.09 E-value=0.052 Score=56.13 Aligned_cols=127 Identities=16% Similarity=0.046 Sum_probs=95.7
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-------------
Q psy10738 68 NAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLN------------- 134 (609)
Q Consensus 68 ~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~------------- 134 (609)
.-.....+...-++..++|+++ .+..+.+|..|+.-. .....+|..+++++++..+..-
T Consensus 176 q~AWRERnp~aRIkaA~eALei------~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~ 247 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEI------NPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFW 247 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh------hhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchh
Confidence 3445667889999999999999 777888888777432 2336788888888887665321
Q ss_pred ------CcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q psy10738 135 ------DKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGN 208 (609)
Q Consensus 135 ------d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 208 (609)
+......+...+|.+....|+ .++|++.+...++... ......++.+|..
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr--------------------~~EAIk~~rdLlke~p----~~~~l~IrenLie 303 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGR--------------------LREAIKMFRDLLKEFP----NLDNLNIRENLIE 303 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCC--------------------hHHHHHHHHHHHhhCC----ccchhhHHHHHHH
Confidence 111235566789999999999 9999999988776542 2234568999999
Q ss_pred HHHHcCCHHHHHHHHHHH
Q psy10738 209 TYYLLGNFKQAIYYHQER 226 (609)
Q Consensus 209 ~~~~~g~~~~A~~~~~~a 226 (609)
++..++.|.++...+.+-
T Consensus 304 ~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 304 ALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHhcCCHHHHHHHHHHh
Confidence 999999999998887763
No 257
>KOG1550|consensus
Probab=97.09 E-value=0.13 Score=56.30 Aligned_cols=255 Identities=21% Similarity=0.223 Sum_probs=134.2
Q ss_pred CChHHHHHHHHHHHHh-CCcchhHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q psy10738 36 GDCRAGVAFFQAAIQA-GTDDLRTLSAIYSQLGNAYFYLG-----DYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNT 109 (609)
Q Consensus 36 g~~~~A~~~~~~al~~-~~~~~~~~a~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~ 109 (609)
.|.+.|+.+|+.+... .+........+.+.+|.+|.... ++..|+.++.++-.. ....+.+.+|.+
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--------g~~~a~~~lg~~ 334 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--------GNPDAQYLLGVL 334 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--------CCchHHHHHHHH
Confidence 4777777777777661 00000001225566777776632 566677777766554 334566777777
Q ss_pred HHHcC---CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHH
Q psy10738 110 LKVMG---KYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQN 186 (609)
Q Consensus 110 ~~~~g---~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 186 (609)
+..-. ++..|.++|..|... ....+.+.+|.+|..- . .+..+...|..++.++
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~--------G~~~A~~~la~~y~~G-~---------------gv~r~~~~A~~~~k~a 390 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKA--------GHILAIYRLALCYELG-L---------------GVERNLELAFAYYKKA 390 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHc--------CChHHHHHHHHHHHhC-C---------------CcCCCHHHHHHHHHHH
Confidence 76654 456777777766543 3355667777766543 1 1122267777777776
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC----CHHHHHH
Q psy10738 187 LALMKEINDTAAQGRACGNLGNTYYLL-GNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG----EYQAASE 261 (609)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~ 261 (609)
.+.- ...+...++..+... +.+..+...+....+..-+... ..+..+........... +...+..
T Consensus 391 A~~g--------~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q--~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 391 AEKG--------NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQ--SNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHcc--------ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHh--hHHHHHHHhccccccccccccchhHHHH
Confidence 6541 112233333333222 5555555444443332222111 00001111111111111 3334444
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHc-C--
Q psy10738 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL----RDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAAR-G-- 334 (609)
Q Consensus 262 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~-g-- 334 (609)
.+.++... + ...+...||.+|..- .+++.|...|..+..-. +...+++|.+|..- |
T Consensus 461 ~~~~a~~~----g----~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---------~~~~~nlg~~~e~g~g~~ 523 (552)
T KOG1550|consen 461 LYSRAAAQ----G----NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---------AQALFNLGYMHEHGEGIK 523 (552)
T ss_pred HHHHHHhc----c----CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---------hHHHhhhhhHHhcCcCcc
Confidence 44433221 1 255677788887654 46889998888876543 56888999888752 2
Q ss_pred ChHHHHHHHHHHHHH
Q psy10738 335 NHEKALYFATKHLEI 349 (609)
Q Consensus 335 ~~~~A~~~~~~al~l 349 (609)
....|..++.++.+.
T Consensus 524 ~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 524 VLHLAKRYYDQASEE 538 (552)
T ss_pred hhHHHHHHHHHHHhc
Confidence 256777777776653
No 258
>KOG1839|consensus
Probab=97.04 E-value=0.011 Score=67.53 Aligned_cols=189 Identities=15% Similarity=0.175 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCC----cchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCh
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGT----DDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM--EDK 96 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~d~ 96 (609)
......|......|.+.+|.+ .-+++.... .-....+..|..++.++...|++++|+.+..++.-+.+.. .+.
T Consensus 933 ~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 933 KDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 345556778888888888888 555554322 1112257799999999999999999999999998887755 467
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHH
Q psy10738 97 LGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL--NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKV 174 (609)
Q Consensus 97 ~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~ 174 (609)
+.....+.+++...+..++...|+..+.+++.+..-. .+.+..+....+++.++...++
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e------------------- 1072 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEE------------------- 1072 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHH-------------------
Confidence 8889999999999999999999999999988765432 2456677778899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 175 CLQEAIKYYEQNLALMKEIND--TAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 175 ~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 232 (609)
++.|+.+.+.|+++.+.... ....+..+..++.++...+++..|+.+.+....+++.
T Consensus 1073 -~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1073 -ADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKE 1131 (1236)
T ss_pred -HHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHH
Confidence 99999999999997666532 2334556666666666666666666666666555443
No 259
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.04 E-value=0.031 Score=49.47 Aligned_cols=103 Identities=21% Similarity=0.281 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcch------------------hHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDL------------------RTLSAIYSQLGNAYFYLGDYQKAMQYHK 84 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~------------------~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 84 (609)
..+...|......|+...++..+++++.+..++. .....++..++..+...|++++|+..++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 3445567777888999999999999999743211 1234566778888889999999999999
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 85 QDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 85 ~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
+++.. .|..-.++..+-.+|...|+..+|+..|++......
T Consensus 87 ~~l~~------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 87 RALAL------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp HHHHH------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHhc------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 99999 888889999999999999999999999999987766
No 260
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.03 E-value=0.0092 Score=56.34 Aligned_cols=107 Identities=17% Similarity=0.175 Sum_probs=75.1
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH
Q psy10738 112 VMGKYDEAMVCCKRHLEISRQLN-DKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 112 ~~g~~~~A~~~~~~al~l~~~~~-d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 190 (609)
....+++|++.|.-|+-...-.+ ++...+..+..+|++|...|+ .+....-+..|++.|.+++..-
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~-------------~~~E~~fl~~Al~~y~~a~~~e 155 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGD-------------EENEKRFLRKALEFYEEAYENE 155 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCC-------------HHHHHHHHHHHHHHHHHHHHhC
Confidence 34568899999998887776554 444778899999999999998 2222333455555555554432
Q ss_pred HHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 191 KEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAR 231 (609)
Q Consensus 191 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 231 (609)
...........+.+.+|.++...|++++|+.+|.+.+..-.
T Consensus 156 ~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 156 DFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred cCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 22122345567888999999999999999999998876533
No 261
>KOG2581|consensus
Probab=97.02 E-value=0.45 Score=47.99 Aligned_cols=180 Identities=16% Similarity=0.080 Sum_probs=117.8
Q ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCcch----hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q psy10738 19 GNMCLELALEGERLCKAGDCRAGVAFFQAAIQA-GTDDL----RTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM 93 (609)
Q Consensus 19 a~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-~~~~~----~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 93 (609)
.+.||-.++-..-++.+.++++|..+-...+.. .-.+. -..+.+|+.+..+|-..|+...-...+..-+..+.--
T Consensus 123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr 202 (493)
T KOG2581|consen 123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR 202 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc
Confidence 466777777777777888999998888777653 11111 1245677888888888888777666666666665555
Q ss_pred CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhH
Q psy10738 94 EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVK 173 (609)
Q Consensus 94 ~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~ 173 (609)
.|....+.....+=..|...+.|+.|-....+.. ++........++.++.+|.+..-+++
T Consensus 203 hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqld------------------ 262 (493)
T KOG2581|consen 203 HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLD------------------ 262 (493)
T ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcc------------------
Confidence 5677777777888888888888888877766543 23333334677788888888888888
Q ss_pred HhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10738 174 VCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAI 220 (609)
Q Consensus 174 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 220 (609)
|..|.+++-+|+..++...--.....+...+..+-..+|++.+-.
T Consensus 263 --YssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers 307 (493)
T KOG2581|consen 263 --YSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERS 307 (493)
T ss_pred --hhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchh
Confidence 888888888888765542211111222223333344456655433
No 262
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.01 E-value=0.0084 Score=53.61 Aligned_cols=93 Identities=18% Similarity=0.311 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q psy10738 76 YQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKY----------DEAMVCCKRHLEISRQLNDKLSEGRALYN 145 (609)
Q Consensus 76 ~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~l~~~~~d~~~~~~~~~~ 145 (609)
|+.|.+.++..... .|..+..+++.|.++..+.++ ++|+.-|++|+.+.| ....++++
T Consensus 7 FE~ark~aea~y~~------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P------~~hdAlw~ 74 (186)
T PF06552_consen 7 FEHARKKAEAAYAK------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINP------NKHDALWC 74 (186)
T ss_dssp HHHHHHHHHHHHHH-------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-T------T-HHHHHH
T ss_pred HHHHHHHHHHHHHh------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCC------chHHHHHH
Confidence 45566666665555 777788888888888877554 445555566666655 67789999
Q ss_pred HHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 146 LGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 146 lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
+|++|...+.. ..-..++...|++|..+|++|...
T Consensus 75 lGnA~ts~A~l---------~~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 75 LGNAYTSLAFL---------TPDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh---------cCChHHHHHHHHHHHHHHHHHHhc
Confidence 99999998861 111334556677777777777765
No 263
>KOG1839|consensus
Probab=96.98 E-value=0.014 Score=66.75 Aligned_cols=192 Identities=18% Similarity=0.135 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CC
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM--EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL--ND 135 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~--~d 135 (609)
+.-....|......|.+.+|.+ .-+++.+.... .-.+..+..|..++.++...|++++|+.+..++.-+.... .+
T Consensus 932 a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence 3344566777777888888888 66666665532 1256778999999999999999999999999998777665 36
Q ss_pred cHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHHc
Q psy10738 136 KLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI--NDTAAQGRACGNLGNTYYLL 213 (609)
Q Consensus 136 ~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~~~~~ 213 (609)
.......+.+++...+..++ ...|+..+.+++.+..-. .+.|..+.+..+++.++...
T Consensus 1011 s~~t~~~y~nlal~~f~~~~--------------------~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v 1070 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKN--------------------LSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGV 1070 (1236)
T ss_pred CHHHHHHhhHHHHHHHhccC--------------------ccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhH
Confidence 67788899999988888887 778888888877664322 35677788889999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 214 GNFKQAIYYHQERLKIAREFGD--KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD 272 (609)
Q Consensus 214 g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 272 (609)
++++.|+.+.+.|+.+...... ....+..+..+++++...+++..|....+....++..
T Consensus 1071 ~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1071 EEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKE 1131 (1236)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999997666433 2333556666777777777777777766666665554
No 264
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.97 E-value=0.56 Score=48.17 Aligned_cols=132 Identities=10% Similarity=-0.034 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHHh-
Q psy10738 236 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI-IAQQL- 313 (609)
Q Consensus 236 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~- 313 (609)
....+..+..++.+....|.++.|..++.++.......... ...+....+.+....|+..+|+..++..+. .....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 45556788999999999999999999999877654322211 345667788999999999999999988887 22211
Q ss_pred --------------------------cchhhHHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHHHHcCCCchHHH
Q psy10738 314 --------------------------MDRVGEGRACWSLGNAHAAR------GNHEKALYFATKHLEISKQLGDPLGQVT 361 (609)
Q Consensus 314 --------------------------~~~~~~~~~~~~La~~~~~~------g~~~~A~~~~~~al~l~~~~~~~~~~~~ 361 (609)
......+.++..+|...... +..+++...|.++..+. +....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~------~~~~k 293 (352)
T PF02259_consen 220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD------PSWEK 293 (352)
T ss_pred ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC------hhHHH
Confidence 12344567888888888888 88999999999999876 44456
Q ss_pred HHHHHHHHHHHcCC
Q psy10738 362 AQMNVTDLRKALGM 375 (609)
Q Consensus 362 a~~~la~l~~~~g~ 375 (609)
++..+|..+..+-.
T Consensus 294 ~~~~~a~~~~~~~~ 307 (352)
T PF02259_consen 294 AWHSWALFNDKLLE 307 (352)
T ss_pred HHHHHHHHHHHHHH
Confidence 77778877765543
No 265
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=96.97 E-value=0.41 Score=46.53 Aligned_cols=35 Identities=11% Similarity=0.296 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCh
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDK 96 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~ 96 (609)
+-+.+..+|+..|+...|+.-++.-+...+..-+.
T Consensus 12 i~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~ 46 (247)
T PF11817_consen 12 IAFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGR 46 (247)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 45667788999999999999999988887766433
No 266
>KOG1550|consensus
Probab=96.96 E-value=0.11 Score=56.81 Aligned_cols=268 Identities=20% Similarity=0.193 Sum_probs=165.8
Q ss_pred ChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q psy10738 37 DCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYL-----GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLK 111 (609)
Q Consensus 37 ~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~ 111 (609)
+...|..+++.+-+.+- ......+|.+|..- .+.+.|+.+++.+..-.++.. ......+.+.+|.+|.
T Consensus 227 ~~~~a~~~~~~~a~~g~------~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a-~~~~~~a~~~lg~~Y~ 299 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGH------SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA-TKGLPPAQYGLGRLYL 299 (552)
T ss_pred hhhHHHHHHHHHHhhcc------hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH-hhcCCccccHHHHHHh
Confidence 45678888888877653 33566777777654 589999999999987211110 1113457888999998
Q ss_pred HcC-----CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHH
Q psy10738 112 VMG-----KYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQN 186 (609)
Q Consensus 112 ~~g-----~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 186 (609)
... ++..|+.+|.++-+. ....+.+.+|.+|..-.. .+++..|..+|..|
T Consensus 300 ~g~~~~~~d~~~A~~~~~~aA~~--------g~~~a~~~lg~~~~~g~~-----------------~~d~~~A~~yy~~A 354 (552)
T KOG1550|consen 300 QGLGVEKIDYEKALKLYTKAAEL--------GNPDAQYLLGVLYETGTK-----------------ERDYRRAFEYYSLA 354 (552)
T ss_pred cCCCCccccHHHHHHHHHHHHhc--------CCchHHHHHHHHHHcCCc-----------------cccHHHHHHHHHHH
Confidence 853 677899998887665 345688899998887650 11388999999887
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh-CCHHHHHH
Q psy10738 187 LALMKEINDTAAQGRACGNLGNTYYL----LGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL-GEYQAASE 261 (609)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~ 261 (609)
... ....+.+.+|.+|.. .-+...|..+++++.+... .. +...++..+... +.+..+.-
T Consensus 355 a~~--------G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~------A~~~~~~~~~~g~~~~~~~~~ 418 (552)
T KOG1550|consen 355 AKA--------GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PS------AAYLLGAFYEYGVGRYDTALA 418 (552)
T ss_pred HHc--------CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hh------hHHHHHHHHHHccccccHHHH
Confidence 653 234577888888764 3478899999999876531 11 334444443332 66666666
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHc----
Q psy10738 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL----RDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAAR---- 333 (609)
Q Consensus 262 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~---- 333 (609)
.+.......-+.. ...+..+.......... .+...+...+.++.. .+...+...||.+|..-
T Consensus 419 ~~~~~a~~g~~~~--q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--------~g~~~a~~~lgd~y~~g~g~~ 488 (552)
T KOG1550|consen 419 LYLYLAELGYEVA--QSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--------QGNADAILKLGDYYYYGLGTG 488 (552)
T ss_pred HHHHHHHhhhhHH--hhHHHHHHHhccccccccccccchhHHHHHHHHHHh--------ccCHHHHhhhcceeeecCCCC
Confidence 5554443332210 00111111111111111 134455555554432 22345778888888754
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q psy10738 334 GNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRK 371 (609)
Q Consensus 334 g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~ 371 (609)
.+++.|...|..|..-. ..+..+++-.+.
T Consensus 489 ~d~~~a~~~y~~a~~~~---------~~~~~nlg~~~e 517 (552)
T KOG1550|consen 489 RDPEKAAAQYARASEQG---------AQALFNLGYMHE 517 (552)
T ss_pred CChHHHHHHHHHHHHhh---------hHHHhhhhhHHh
Confidence 35889999988887632 677777777664
No 267
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.91 E-value=0.013 Score=55.23 Aligned_cols=98 Identities=19% Similarity=0.219 Sum_probs=73.5
Q ss_pred hCCHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc-------chhhHHHHHH
Q psy10738 253 LGEYQAASEHYKRTLVLAQDLG-DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM-------DRVGEGRACW 324 (609)
Q Consensus 253 ~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~ 324 (609)
...+++|++.|.-|+-...-.+ .+...+..+..+|++|...|+.+....++++|+....+.- .......+.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 3456777777777776666444 4446778888888888888887777777777776665431 1334567888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 325 SLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 325 ~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
.+|.++.+.|++++|..+|.+.+...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999988754
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.84 E-value=0.0031 Score=40.78 Aligned_cols=32 Identities=38% Similarity=0.618 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy10738 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREF 233 (609)
Q Consensus 202 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (609)
++.+||.+|...|+|++|+.+|++++.+....
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~ 32 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP 32 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 35666777777777777777777766655543
No 269
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.84 E-value=0.0012 Score=42.01 Aligned_cols=34 Identities=29% Similarity=0.643 Sum_probs=30.3
Q ss_pred HHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHH
Q psy10738 44 FFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQ 81 (609)
Q Consensus 44 ~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 81 (609)
+|++||+++|+++. +|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~----a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAE----AYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHH----HHHHHHHHHHHCcCHHhhcC
Confidence 47899999999955 99999999999999999863
No 270
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.80 E-value=0.0035 Score=40.53 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q psy10738 323 CWSLGNAHAARGNHEKALYFATKHLEISKQ 352 (609)
Q Consensus 323 ~~~La~~~~~~g~~~~A~~~~~~al~l~~~ 352 (609)
+..||.+|..+|++++|+.+|++++.+..+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 455666666666666666666666555543
No 271
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.78 E-value=0.13 Score=46.69 Aligned_cols=99 Identities=23% Similarity=0.125 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~ 141 (609)
....++..+...|++++|+..++.++... .|......+-.+||.+...+|.+++|+..+... .+....+.
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t---~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~-------~~~~w~~~ 160 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQT---KDENLKALAALRLARVQLQQKKADAALKTLDTI-------KEESWAAI 160 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccc---hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-------ccccHHHH
Confidence 34567888899999999999999988653 335556778889999999999999998876532 23334566
Q ss_pred HHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH
Q psy10738 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 142 ~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 190 (609)
.....|.++...|+ -++|...|++++...
T Consensus 161 ~~elrGDill~kg~--------------------k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 161 VAELRGDILLAKGD--------------------KQEARAAYEKALESD 189 (207)
T ss_pred HHHHhhhHHHHcCc--------------------hHHHHHHHHHHHHcc
Confidence 67788999999999 899999999988763
No 272
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.71 E-value=0.0023 Score=40.72 Aligned_cols=31 Identities=39% Similarity=0.716 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 201 RACGNLGNTYYLLGNFKQAIYYHQERLKIAR 231 (609)
Q Consensus 201 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 231 (609)
.+|+++|.+|..+|++++|+.+|++++++.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 3556666666666666666666666665543
No 273
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=96.61 E-value=0.5 Score=56.75 Aligned_cols=265 Identities=14% Similarity=0.039 Sum_probs=166.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccC-----------------
Q psy10738 98 GEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKV----------------- 160 (609)
Q Consensus 98 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~----------------- 160 (609)
..++....+|..+...|.+.+|+..|..|+.+.+..+|....+.++-.++.+....+......
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~ 319 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTS 319 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccC
Confidence 446677789999999999999999999999999999999999999888877665544311000
Q ss_pred --CC--------C----------------CCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcC
Q psy10738 161 --GQ--------Q----------------DPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLG 214 (609)
Q Consensus 161 --~~--------~----------------~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g 214 (609)
+. . +...++......+++|+.+|.++.....+..-......+....+.++....
T Consensus 320 ~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~ 399 (1185)
T PF08626_consen 320 SSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQH 399 (1185)
T ss_pred ccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhh
Confidence 00 0 012345567778889999998887554444333445566667777776666
Q ss_pred --------------------CHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-c
Q psy10738 215 --------------------NFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD-L 273 (609)
Q Consensus 215 --------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~ 273 (609)
.-.++..++.+++.+....-........|..+|.+|...|-..++.-+++.++...-. .
T Consensus 400 ~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~~~l 479 (1185)
T PF08626_consen 400 LSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLVPGL 479 (1185)
T ss_pred cccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcccc
Confidence 6778888888888876655566677889999999999999988888788777665532 2
Q ss_pred CC-cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh---c-chhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy10738 274 GD-RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL---M-DRVGEGRACWSLGNAHAARGNHEKALYFATKHLE 348 (609)
Q Consensus 274 ~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~-~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 348 (609)
.+ .......+..+...|--..+.+.- ...... + .......++..+-.+..++|++..+..+.-..+.
T Consensus 480 ~~~~~s~~~lL~~~~~~Ygi~~~~~~~--------~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~~~~~LL~ 551 (1185)
T PF08626_consen 480 IHWHQSYRSLLEELCKGYGISLDPESS--------SEDSSKGSQSNWPSLQIDVLKECINIAEALGDFAGVLRFSSLLLR 551 (1185)
T ss_pred CCcchHHHHHHHHHhccCcccCCcccc--------ccccccccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 11 111111222233333221111110 000000 0 2223344555566667778888888877777666
Q ss_pred HHHHcCCCchHHHHHHHHHHHH
Q psy10738 349 ISKQLGDPLGQVTAQMNVTDLR 370 (609)
Q Consensus 349 l~~~~~~~~~~~~a~~~la~l~ 370 (609)
.+-..-....+.+....+....
T Consensus 552 ~~~~~Ls~~EQ~~L~~~l~~~~ 573 (1185)
T PF08626_consen 552 TYSPLLSPDEQIRLANNLQRTS 573 (1185)
T ss_pred HHhhhCCHHHHHHHHHHHHHHh
Confidence 6544444444555555544444
No 274
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.60 E-value=0.0034 Score=39.87 Aligned_cols=31 Identities=35% Similarity=0.561 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 101 KSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 101 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
.+++++|.+|..+|++++|+.+|++++++.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4566666667777777777777766666544
No 275
>KOG2041|consensus
Probab=96.55 E-value=1.5 Score=47.27 Aligned_cols=63 Identities=10% Similarity=0.082 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----HHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLT-----LARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKR 125 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 125 (609)
.+.|..++......-.++.|...|-+.-. +.++++. ...--...+.+-..-|+|++|.+.|-.
T Consensus 692 prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~---i~s~~~q~aei~~~~g~feeaek~yld 759 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRT---IHSKEQQRAEISAFYGEFEEAEKLYLD 759 (1189)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhh---hhhHHHHhHhHhhhhcchhHhhhhhhc
Confidence 55788888888777777777776655422 1111110 000112234445556888888877753
No 276
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.54 E-value=0.038 Score=42.12 Aligned_cols=73 Identities=19% Similarity=0.278 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCh
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDK 96 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~ 96 (609)
...+.+|..++...+.++|+..++++++..++.+ ..-.++-.+..+|...|+|.+++.+...-++++++.+++
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~-~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDRE-DRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3456678888899999999999999998877644 356677888888889999999999888888888776653
No 277
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.51 Score=45.44 Aligned_cols=153 Identities=16% Similarity=0.016 Sum_probs=107.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q psy10738 207 GNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 286 (609)
Q Consensus 207 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 286 (609)
+..-.....-++-++-+.+.++-.+..+.....+.++.++|..|...++.+.+.+++.+.+.-+...+-......+...+
T Consensus 82 ~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRl 161 (412)
T COG5187 82 GRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRL 161 (412)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHH
Confidence 33333445556677778777777776665666788999999999999999999999999998887777666666666777
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHH
Q psy10738 287 GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTA 362 (609)
Q Consensus 287 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a 362 (609)
|.+|..+. -..+.++.+-.+.++-++.....+.-...|.......++.+|...+-..+..+.+..-.+....+
T Consensus 162 g~~y~d~~---vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~v 234 (412)
T COG5187 162 GLIYGDRK---VVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISYSRAV 234 (412)
T ss_pred HHhhccHH---HHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccHHHHH
Confidence 77775443 33344445555556666655555555566777778889999998888888777665544433333
No 278
>KOG0545|consensus
Probab=96.51 E-value=0.032 Score=52.15 Aligned_cols=104 Identities=21% Similarity=0.204 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc------CCh------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM------EDK------LGEAKSSGNLGNTLKVMGKYDEAMVCCKRHL 127 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------~d~------~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 127 (609)
..++..-|+-++..|+|.+|...|..|+...+.+ +++ ....-.+.|.+.|+...|+|-++++++...+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999887754 111 1124567889999999999999999999988
Q ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 128 EISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 128 ~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
...+ ....+|+..|..+...-+ ..+|..-+.+++++
T Consensus 258 ~~~~------~nvKA~frRakAhaa~Wn--------------------~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 258 RHHP------GNVKAYFRRAKAHAAVWN--------------------EAEAKADLQKVLEL 293 (329)
T ss_pred hcCC------chHHHHHHHHHHHHhhcC--------------------HHHHHHHHHHHHhc
Confidence 8776 778899999999998888 89999999988887
No 279
>KOG4507|consensus
Probab=96.50 E-value=0.033 Score=58.25 Aligned_cols=99 Identities=23% Similarity=0.077 Sum_probs=83.0
Q ss_pred HHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHH
Q psy10738 242 ANSNLGNS-HIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 320 (609)
Q Consensus 242 ~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 320 (609)
...|+|-+ +...|+...|+.++..|+...+... .....+||.+..+.|-...|-.++.+++.+.-.- .
T Consensus 608 ~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~-----~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~se------p 676 (886)
T KOG4507|consen 608 LILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQ-----DVPLVNLANLLIHYGLHLDATKLLLQALAINSSE------P 676 (886)
T ss_pred EEeecccceeeecCCcHHHHHHHHHHhccChhhh-----cccHHHHHHHHHHhhhhccHHHHHHHHHhhcccC------c
Confidence 33444444 4568999999999999998877642 3356789999999999999999999999998884 4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy10738 321 RACWSLGNAHAARGNHEKALYFATKHLEISK 351 (609)
Q Consensus 321 ~~~~~La~~~~~~g~~~~A~~~~~~al~l~~ 351 (609)
..++.+|++|..+.+.+.|++.+++|+....
T Consensus 677 l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 677 LTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred hHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 4889999999999999999999999999984
No 280
>KOG0376|consensus
Probab=96.37 E-value=0.0041 Score=63.67 Aligned_cols=98 Identities=14% Similarity=0.203 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
++..+|..++..++|+.|+..|.+||+++|+. +.++...+.++...++|..|+.-+.+|+++ .+....+|
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnc----a~~~anRa~a~lK~e~~~~Al~Da~kaie~------dP~~~K~Y 75 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNC----AIYFANRALAHLKVESFGGALHDALKAIEL------DPTYIKAY 75 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcc----eeeechhhhhheeechhhhHHHHHHhhhhc------Cchhhhee
Confidence 45567888999999999999999999999986 446777889999999999999999999999 79999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
+..|.+....+.+.+|+..|+....+.+
T Consensus 76 ~rrg~a~m~l~~~~~A~~~l~~~~~l~P 103 (476)
T KOG0376|consen 76 VRRGTAVMALGEFKKALLDLEKVKKLAP 103 (476)
T ss_pred eeccHHHHhHHHHHHHHHHHHHhhhcCc
Confidence 9999999999999999999999888877
No 281
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.36 E-value=0.005 Score=39.01 Aligned_cols=29 Identities=41% Similarity=0.755 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIA 230 (609)
Q Consensus 202 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 230 (609)
++..+|.++...|++++|+.++++++.+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 45566666666666666666666666554
No 282
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.36 E-value=0.0072 Score=41.08 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
++..+|.+|...|++++|+..|+++++. .|....++..+|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH------CcCCHHHHHHhhh
Confidence 5667777777777777777777777776 5666666666653
No 283
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.34 E-value=0.14 Score=45.13 Aligned_cols=75 Identities=23% Similarity=0.173 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-HcCCCch
Q psy10738 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISK-QLGDPLG 358 (609)
Q Consensus 280 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~-~~~~~~~ 358 (609)
..+...++..+...|++++|+..+++++.+.+- .-.++..+..+|...|++.+|+..|++...... ++|..+.
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~------~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPY------DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 446677888999999999999999999987654 345889999999999999999999999987776 5676655
Q ss_pred HH
Q psy10738 359 QV 360 (609)
Q Consensus 359 ~~ 360 (609)
..
T Consensus 136 ~~ 137 (146)
T PF03704_consen 136 PE 137 (146)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 284
>KOG4814|consensus
Probab=96.32 E-value=2 Score=46.06 Aligned_cols=107 Identities=15% Similarity=0.112 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcH
Q psy10738 58 TLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKL 137 (609)
Q Consensus 58 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~ 137 (609)
.+-.++.+-|.-.+...+|..++++|...+............+....+++.||..+.+.+.|.+++++|-+..++
T Consensus 352 ~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~----- 426 (872)
T KOG4814|consen 352 CIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ----- 426 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-----
Confidence 344566777888889999999999999999887765555666899999999999999999999999999887652
Q ss_pred HHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH
Q psy10738 138 SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 138 ~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 190 (609)
.......+-.+....|. -++|+..........
T Consensus 427 -~~l~q~~~~~~~~~E~~--------------------Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 427 -SPLCQLLMLQSFLAEDK--------------------SEEALTCLQKIKSSE 458 (872)
T ss_pred -cHHHHHHHHHHHHHhcc--------------------hHHHHHHHHHHHhhh
Confidence 23333444455555666 677777776665544
No 285
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.30 E-value=0.0067 Score=38.40 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 101 KSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 101 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
.+++.+|.++...|++++|+.+|++++.+.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4556666666666666666666666666543
No 286
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.24 E-value=0.72 Score=47.11 Aligned_cols=202 Identities=16% Similarity=0.166 Sum_probs=120.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCh--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 75 DYQKAMQYHKQDLTLARNMEDK--LGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHA 152 (609)
Q Consensus 75 ~~~~A~~~~~~al~~~~~~~d~--~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~ 152 (609)
.+..+...+.+.+...+..-|. ...+.+..++=..|....+|+.-+...+..-.+ +.. +......+....|.++..
T Consensus 114 ~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~-p~~-~~~~~~~i~~~yafALnR 191 (374)
T PF13281_consen 114 RYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTC-DVANQHNIKFQYAFALNR 191 (374)
T ss_pred HHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-Ccc-chhcchHHHHHHHHHHhh
Confidence 3444444444555544433222 223556667777788888888777776654333 111 122344566677778887
Q ss_pred ---cccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHc---------CCHHHHH
Q psy10738 153 ---KGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLL---------GNFKQAI 220 (609)
Q Consensus 153 ---~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~---------g~~~~A~ 220 (609)
.|+ .++|+..+..++.-. ......++..+|.+|-.. ...++|+
T Consensus 192 rn~~gd--------------------re~Al~il~~~l~~~-----~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi 246 (374)
T PF13281_consen 192 RNKPGD--------------------REKALQILLPVLESD-----ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAI 246 (374)
T ss_pred cccCCC--------------------HHHHHHHHHHHHhcc-----CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHH
Confidence 777 899999888764431 222345677777777542 2367788
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHH---Hc--CCcHHHHHHHHHHHHHHHHhC
Q psy10738 221 YYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTL-VLAQ---DL--GDRAVEAQACYSLGNTYTLLR 294 (609)
Q Consensus 221 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~---~~--~~~~~~~~~~~~la~~~~~~g 294 (609)
.+|.++.++.+.. ..-.|++.++...|.-.+....+.+.. .+.. .. .+.....+.+-.++.+....|
T Consensus 247 ~~Y~kgFe~~~~~-------Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~ 319 (374)
T PF13281_consen 247 EWYRKGFEIEPDY-------YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAG 319 (374)
T ss_pred HHHHHHHcCCccc-------cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcC
Confidence 8888887765322 134566777777775443333333322 2221 11 122233455566778888899
Q ss_pred CHHHHHHHHHHHHHHH
Q psy10738 295 DYPTAIDYHLRHLIIA 310 (609)
Q Consensus 295 ~~~~A~~~~~~al~~~ 310 (609)
++++|+.++++++...
T Consensus 320 d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 320 DYEKAIQAAEKAFKLK 335 (374)
T ss_pred CHHHHHHHHHHHhhcC
Confidence 9999999999988764
No 287
>KOG0985|consensus
Probab=96.20 E-value=0.46 Score=53.21 Aligned_cols=193 Identities=16% Similarity=0.132 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHH
Q psy10738 98 GEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQ 177 (609)
Q Consensus 98 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 177 (609)
....+|..+|.+....|...+|++.|-+|-+ ...|...-.+....|. |+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyikadD-----------ps~y~eVi~~a~~~~~--------------------~e 1150 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKADD-----------PSNYLEVIDVASRTGK--------------------YE 1150 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhcCC-----------cHHHHHHHHHHHhcCc--------------------HH
Confidence 3466788899999999999999888876532 2245555666677777 88
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHH---------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCh
Q psy10738 178 EAIKYYEQNLALMKEINDTAAQGRACG---------------------NLGNTYYLLGNFKQAIYYHQERLKIAREFGDK 236 (609)
Q Consensus 178 ~A~~~~~~al~~~~~~~~~~~~~~~~~---------------------~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 236 (609)
+-+.|+..+.+-.++..-......+|. ..|.-++..|.|+.|.-+|...
T Consensus 1151 dLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------- 1220 (1666)
T KOG0985|consen 1151 DLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------- 1220 (1666)
T ss_pred HHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHh----------
Confidence 888887777665444322222222221 2233333344444443333221
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HHc----------------C-CcHHHHHHHHHHHHHHHHhCCHH
Q psy10738 237 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLA--QDL----------------G-DRAVEAQACYSLGNTYTLLRDYP 297 (609)
Q Consensus 237 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~----------------~-~~~~~~~~~~~la~~~~~~g~~~ 297 (609)
.-+..++..+..+|+|..|....++|-..- +.. + +....+.-+-.+...|...|-++
T Consensus 1221 ----SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFe 1296 (1666)
T KOG0985|consen 1221 ----SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFE 1296 (1666)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHH
Confidence 134567777888888888887777653321 111 0 00011233445666777777777
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHH
Q psy10738 298 TAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYF 342 (609)
Q Consensus 298 ~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~ 342 (609)
+-+..++.++-+-+. ....+..||.+|.+- ++++-.++
T Consensus 1297 ElIsl~Ea~LGLERA------HMgmfTELaiLYsky-kp~km~EH 1334 (1666)
T KOG0985|consen 1297 ELISLLEAGLGLERA------HMGMFTELAILYSKY-KPEKMMEH 1334 (1666)
T ss_pred HHHHHHHhhhchhHH------HHHHHHHHHHHHHhc-CHHHHHHH
Confidence 777777776655433 233555666666543 44444444
No 288
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.19 E-value=0.013 Score=39.80 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGN 68 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~ 68 (609)
...|..+...|++++|+..|+++++..|+++. ++..+|.
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~----a~~~La~ 43 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALALDPDDPE----AWRALAQ 43 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH----HHHHhhh
Confidence 45689999999999999999999999999965 5666653
No 289
>KOG0687|consensus
Probab=96.15 E-value=0.69 Score=45.36 Aligned_cols=146 Identities=14% Similarity=0.016 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCH
Q psy10738 217 KQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY 296 (609)
Q Consensus 217 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 296 (609)
++-++-+.+.++-+.++........++.+.|..|...|+-+.|.+.+.+..+-.-..+.......+...+|..|. +.
T Consensus 81 eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~---D~ 157 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYL---DH 157 (393)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhc---cH
Confidence 444556666666666655555667799999999999999999999999998887777777667777777787774 44
Q ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHH
Q psy10738 297 PTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMN 365 (609)
Q Consensus 297 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~ 365 (609)
+--.+..++|-.+.++-+|.....+.-..-|.......++.+|...|-.++..+.+..-.+...-+.+.
T Consensus 158 ~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Yt 226 (393)
T KOG0687|consen 158 DLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRYT 226 (393)
T ss_pred HHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHHHH
Confidence 555556667777777777766666666666777788889999999998888877666544444444433
No 290
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.04 E-value=0.0057 Score=38.90 Aligned_cols=33 Identities=30% Similarity=0.435 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHH
Q psy10738 82 YHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAM 120 (609)
Q Consensus 82 ~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~ 120 (609)
+|++++++ .|..+.+++++|.+|...|++++|+
T Consensus 1 ~y~kAie~------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIEL------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHH------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 36788888 8999999999999999999999986
No 291
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.02 E-value=0.016 Score=36.72 Aligned_cols=31 Identities=32% Similarity=0.608 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 201 RACGNLGNTYYLLGNFKQAIYYHQERLKIAR 231 (609)
Q Consensus 201 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 231 (609)
.++..+|.+|..+|++++|+.+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3556666666666666666666666666544
No 292
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.96 E-value=0.017 Score=36.54 Aligned_cols=31 Identities=29% Similarity=0.540 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 101 KSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 101 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
.+++.+|.+|..+|++++|+.+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4566667777777777777777776666654
No 293
>KOG1308|consensus
Probab=95.88 E-value=0.0033 Score=61.47 Aligned_cols=94 Identities=14% Similarity=0.252 Sum_probs=85.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q psy10738 27 LEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNL 106 (609)
Q Consensus 27 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~l 106 (609)
.++...+..|.+++|++.|..++.++|.. +.+|...+.++..+++...|+..|..++.+ ++..+.-|-..
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~----a~l~~kr~sv~lkl~kp~~airD~d~A~ei------n~Dsa~~ykfr 188 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIELNPPL----AILYAKRASVFLKLKKPNAAIRDCDFAIEI------NPDSAKGYKFR 188 (377)
T ss_pred HHHHHHhcCcchhhhhcccccccccCCch----hhhcccccceeeeccCCchhhhhhhhhhcc------Ccccccccchh
Confidence 34777889999999999999999999975 558889999999999999999999999999 88888889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 107 GNTLKVMGKYDEAMVCCKRHLEIS 130 (609)
Q Consensus 107 g~~~~~~g~~~~A~~~~~~al~l~ 130 (609)
|.....+|++.+|...+..+.++.
T Consensus 189 g~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 189 GYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred hHHHHHhhchHHHHHHHHHHHhcc
Confidence 999999999999999999888763
No 294
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=95.88 E-value=1.6 Score=52.68 Aligned_cols=167 Identities=15% Similarity=0.172 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC-----------------------
Q psy10738 58 TLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG----------------------- 114 (609)
Q Consensus 58 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g----------------------- 114 (609)
..++..-.+|..+...|.+.+|+..|..|+..++..+|....+.++-.++.+....+
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~ 319 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTS 319 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccC
Confidence 345667778888888888888888888888888888888777777766655433221
Q ss_pred ----------------------------------------CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc
Q psy10738 115 ----------------------------------------KYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKG 154 (609)
Q Consensus 115 ----------------------------------------~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g 154 (609)
.+++|+.+|.++.....+.........+...++.++....
T Consensus 320 ~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~ 399 (1185)
T PF08626_consen 320 SSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQH 399 (1185)
T ss_pred ccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhh
Confidence 1334444454443222222222244555555666555554
Q ss_pred c------ccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10738 155 K------AIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLK 228 (609)
Q Consensus 155 ~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 228 (609)
. .+. ....+.... . .-.++..+..+++.+....-+.......|..+|.+|..+|-..++.-+++.++.
T Consensus 400 ~~~~l~~iV~--~~~~~~~~~---~-~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~ 473 (1185)
T PF08626_consen 400 LSDNLDHIVK--RPLTPTPNI---S-SRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAV 473 (1185)
T ss_pred cccchhhhhc--cccccccCC---C-CHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 0 000 000000000 0 156667777777766544445677789999999999999999988888888776
Q ss_pred HH
Q psy10738 229 IA 230 (609)
Q Consensus 229 ~~ 230 (609)
..
T Consensus 474 ~~ 475 (1185)
T PF08626_consen 474 QL 475 (1185)
T ss_pred Hh
Confidence 55
No 295
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.86 E-value=0.098 Score=51.95 Aligned_cols=63 Identities=10% Similarity=0.057 Sum_probs=27.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q psy10738 208 NTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL 273 (609)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 273 (609)
..+...|+.+.|...|++++... ........+|......-...|+.+......+++.+..+..
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~l---~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISSL---PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCTS---SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHHhCcHHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 33344444444444444444331 1111111244444444455555555556666655555444
No 296
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.82 E-value=0.28 Score=50.00 Aligned_cols=169 Identities=18% Similarity=0.167 Sum_probs=107.2
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q psy10738 31 RLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFY---LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLG 107 (609)
Q Consensus 31 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg 107 (609)
.|....+|+.-+.+.+..-.....+......+-...|.++.. .|+.++|+..+..++... ....++.+..+|
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-----~~~~~d~~gL~G 224 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-----ENPDPDTLGLLG 224 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-----CCCChHHHHHHH
Confidence 455667888888887776555322222234467788888888 899999999998875441 344566788888
Q ss_pred HHHHHc---------CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHH
Q psy10738 108 NTLKVM---------GKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQE 178 (609)
Q Consensus 108 ~~~~~~---------g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 178 (609)
.+|... ...++|+.+|.++.++.+. ...-.|++.++...|.. +..
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-------~Y~GIN~AtLL~~~g~~-------------------~~~ 278 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-------YYSGINAATLLMLAGHD-------------------FET 278 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-------ccchHHHHHHHHHcCCc-------------------ccc
Confidence 887653 2367888888888776541 12334667777777761 111
Q ss_pred HHHHHHHHHHH---H--HHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 179 AIKYYEQNLAL---M--KEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIA 230 (609)
Q Consensus 179 A~~~~~~al~~---~--~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 230 (609)
..+.-+-.+.+ . +...+.....+.+..++.+....|++++|+..+++++...
T Consensus 279 ~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 279 SEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred hHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 11111111111 1 1112233445666777888888999999999999998764
No 297
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.82 E-value=0.98 Score=45.10 Aligned_cols=186 Identities=25% Similarity=0.286 Sum_probs=120.4
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 110 LKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 110 ~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
....+++..|...+.++-.. ....+...++.+|..-.- +..+..+|..+|..+.+
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~--------~~~~a~~~l~~~y~~g~g----------------v~~~~~~A~~~~~~~a~- 105 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL--------GDAAALALLGQMYGAGKG----------------VSRDKTKAADWYRCAAA- 105 (292)
T ss_pred ccccccHHHHHHHHHHhhhc--------CChHHHHHHHHHHHhccC----------------ccccHHHHHHHHHHHhh-
Confidence 34556777777777766551 112567777877776443 22237888888874432
Q ss_pred HHHhCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC-------CHHH
Q psy10738 190 MKEINDTAAQGRACGNLGNTYYL----LGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG-------EYQA 258 (609)
Q Consensus 190 ~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~ 258 (609)
.....+.+++|.+|.. ..++.+|..+|.++...- .... ..+.+.+|.+|..-. +...
T Consensus 106 -------~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g----~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~ 173 (292)
T COG0790 106 -------DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG----NVEA-ALAMYRLGLAYLSGLQALAVAYDDKK 173 (292)
T ss_pred -------cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC----ChhH-HHHHHHHHHHHHcChhhhcccHHHHh
Confidence 2234577778888887 448899999999887642 2111 234677777776542 2336
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcC
Q psy10738 259 ASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL----LRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARG 334 (609)
Q Consensus 259 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g 334 (609)
|..+|.++-... ...+...+|.+|.. ..++.+|..+|.++.+.- + ...++.++ ++...|
T Consensus 174 A~~~~~~aa~~~--------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g----~----~~a~~~~~-~~~~~g 236 (292)
T COG0790 174 ALYLYRKAAELG--------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG----D----GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHhc--------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----C----HHHHHHHH-HHHhcC
Confidence 777777766544 35678888888865 348999999999987542 2 45777777 666555
Q ss_pred ---------------ChHHHHHHHHHHHHH
Q psy10738 335 ---------------NHEKALYFATKHLEI 349 (609)
Q Consensus 335 ---------------~~~~A~~~~~~al~l 349 (609)
+...|..++.++...
T Consensus 237 ~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 237 EGVKKAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred CCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence 666677766665543
No 298
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.82 E-value=0.062 Score=53.36 Aligned_cols=136 Identities=9% Similarity=-0.054 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcCCcHHHH
Q psy10738 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIF-LGEYQAASEHYKRTLVLAQDLGDRAVEA 280 (609)
Q Consensus 202 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~ 280 (609)
+|..+.....+.+..+.|...|.+|++. .. ....+|...|.+... .++.+.|...|+.+++..+.. .
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~----~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~------~ 70 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD----KR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD------P 70 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC----CC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------H
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC----CC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC------H
Confidence 4555666666777789999999998631 11 112367778888666 566677999999999887653 4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q psy10738 281 QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQ 352 (609)
Q Consensus 281 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~ 352 (609)
..+......+...|+.+.|...|++++.... .......+|......-...|+.+......+++.++..+
T Consensus 71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~---~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 71 DFWLEYLDFLIKLNDINNARALFERAISSLP---KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSS---CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcC---chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 5566666788899999999999999986522 22213456777778888889999999998888887643
No 299
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.68 E-value=0.69 Score=46.20 Aligned_cols=177 Identities=22% Similarity=0.201 Sum_probs=118.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYL----GDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
+......+++..|...+..+-.... ......++.+|... .+..+|..+|..+.+ ...+.+.+
T Consensus 48 ~~~~~~~~~~~~a~~~~~~a~~~~~------~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--------~g~~~a~~ 113 (292)
T COG0790 48 GAGSAYPPDYAKALKSYEKAAELGD------AAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--------DGLAEALF 113 (292)
T ss_pred cccccccccHHHHHHHHHHhhhcCC------hHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--------cccHHHHH
Confidence 3444566788899999988876332 13566777777653 467888888884433 34566788
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHH
Q psy10738 105 NLGNTLKV----MGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAI 180 (609)
Q Consensus 105 ~lg~~~~~----~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~ 180 (609)
.+|.+|.. ..++.+|..+|.++.+.-. ... ..+.+.+|.+|..-.. ...+..+...|.
T Consensus 114 ~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~----~~a-~~~~~~l~~~~~~g~~-------------~~~~~~~~~~A~ 175 (292)
T COG0790 114 NLGLMYANGRGVPLDLVKALKYYEKAAKLGN----VEA-ALAMYRLGLAYLSGLQ-------------ALAVAYDDKKAL 175 (292)
T ss_pred hHHHHHhcCCCcccCHHHHHHHHHHHHHcCC----hhH-HHHHHHHHHHHHcChh-------------hhcccHHHHhHH
Confidence 89999887 4589999999999877532 111 4457788888776421 011112245788
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC
Q psy10738 181 KYYEQNLALMKEINDTAAQGRACGNLGNTYYL----LGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG 254 (609)
Q Consensus 181 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 254 (609)
.+|.++-... ...+..++|.+|.. ..++.+|..+|.++-+. ++ ..+.+.++ ++...|
T Consensus 176 ~~~~~aa~~~--------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~----g~----~~a~~~~~-~~~~~g 236 (292)
T COG0790 176 YLYRKAAELG--------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ----GD----GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHhc--------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----CC----HHHHHHHH-HHHhcC
Confidence 8888776653 35678888877765 34889999999998764 22 23677777 666555
No 300
>KOG0687|consensus
Probab=95.57 E-value=1.7 Score=42.80 Aligned_cols=134 Identities=11% Similarity=0.079 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChH
Q psy10738 118 EAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTA 197 (609)
Q Consensus 118 ~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 197 (609)
+-++-+.+.++-+.+.........++.+.|..|...|+ -+.|.+.+.+..+-.-..+...
T Consensus 82 eki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigD--------------------kena~~~~~~t~~ktvs~g~ki 141 (393)
T KOG0687|consen 82 EKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGD--------------------KENALEALRKTYEKTVSLGHKI 141 (393)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcc--------------------HHHHHHHHHHHHHHHhhcccch
Confidence 34445555555555444445677889999999999999 8999998888887777777777
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Q psy10738 198 AQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG 274 (609)
Q Consensus 198 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 274 (609)
........+|..|. +.+--.+..+++-.+..+.+|....-+.-..-|.......++.+|...|-.++..+....
T Consensus 142 DVvf~~iRlglfy~---D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~E 215 (393)
T KOG0687|consen 142 DVVFYKIRLGLFYL---DHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYE 215 (393)
T ss_pred hhHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccccee
Confidence 77777777777764 555666667777777778888776666666778788888899999999888877665543
No 301
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=2.4 Score=41.03 Aligned_cols=137 Identities=13% Similarity=0.028 Sum_probs=95.7
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh
Q psy10738 114 GKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI 193 (609)
Q Consensus 114 g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 193 (609)
..-++-++-+.+.++-.+..+.......++.++|..|...++ .+.+.+...+.+.-+...
T Consensus 89 kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D--------------------~~ng~~~~~~~~~~a~st 148 (412)
T COG5187 89 KKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMD--------------------IQNGFEWMRRLMRDAMST 148 (412)
T ss_pred HhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhh--------------------hhhHHHHHHHHHHHHHhc
Confidence 334556666766666666655566778899999999999998 888888888887777666
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q psy10738 194 NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL 273 (609)
Q Consensus 194 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 273 (609)
+-......+-..+|.+|. +-.-..+.++.+-.+..+.++....-+.-...|...+...++.+|...+...+..+...
T Consensus 149 g~KiDv~l~kiRlg~~y~---d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~ 225 (412)
T COG5187 149 GLKIDVFLCKIRLGLIYG---DRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESS 225 (412)
T ss_pred ccchhhHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccccc
Confidence 666666566666676664 43444445555556666667766555566667777777888888888887777665544
No 302
>KOG0890|consensus
Probab=95.35 E-value=7.5 Score=48.30 Aligned_cols=68 Identities=10% Similarity=-0.053 Sum_probs=53.4
Q ss_pred CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 275 DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 275 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
.....+.+|...|.+....|.++.|..++-+|.+.. ...++...|..++..|+...|+..+++.++..
T Consensus 1665 ~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1665 LKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--------LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 345567888888888888888888888887776543 34578888888888888888888888888655
No 303
>KOG0985|consensus
Probab=95.28 E-value=4.4 Score=45.89 Aligned_cols=208 Identities=14% Similarity=0.092 Sum_probs=105.0
Q ss_pred cCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q psy10738 35 AGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG 114 (609)
Q Consensus 35 ~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g 114 (609)
-+..+.|.++.+++- . ..+|..+|.+....|...+|++.|-+|-. ...|...-.+....|
T Consensus 1088 i~~ldRA~efAe~~n-----~----p~vWsqlakAQL~~~~v~dAieSyikadD-----------ps~y~eVi~~a~~~~ 1147 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCN-----E----PAVWSQLAKAQLQGGLVKDAIESYIKADD-----------PSNYLEVIDVASRTG 1147 (1666)
T ss_pred hhhHHHHHHHHHhhC-----C----hHHHHHHHHHHHhcCchHHHHHHHHhcCC-----------cHHHHHHHHHHHhcC
Confidence 455566655555431 1 23677777777777777777776654311 123444445555556
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcHHH---------------------HHHHHHHHHHHHHcccccccCCCCCCCCCchHhH
Q psy10738 115 KYDEAMVCCKRHLEISRQLNDKLSE---------------------GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVK 173 (609)
Q Consensus 115 ~~~~A~~~~~~al~l~~~~~d~~~~---------------------~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~ 173 (609)
.|++-+.++.-|.+..++..-.... ..-....|.-++..|.
T Consensus 1148 ~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~------------------ 1209 (1666)
T KOG0985|consen 1148 KYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKM------------------ 1209 (1666)
T ss_pred cHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhh------------------
Confidence 6666655555444433221110000 0012234555555555
Q ss_pred HhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHh----CCh--HH-------
Q psy10738 174 VCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKI--AREF----GDK--AA------- 238 (609)
Q Consensus 174 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~----~~~--~~------- 238 (609)
|+.|.-.|.. ..-+..|+..+..+|+|..|....++|-.. .+.. -+. ..
T Consensus 1210 --y~aAkl~y~~--------------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL 1273 (1666)
T KOG0985|consen 1210 --YEAAKLLYSN--------------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGL 1273 (1666)
T ss_pred --hHHHHHHHHH--------------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCc
Confidence 5555444432 123445666667777777777766665321 1110 000 00
Q ss_pred ----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q psy10738 239 ----ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 303 (609)
Q Consensus 239 ----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 303 (609)
.+.-+-.+...|...|-+++-+..++.++-+-+.. ...+..||.+|.+- ++++-.+++
T Consensus 1274 ~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAH------MgmfTELaiLYsky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1274 NIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAH------MGMFTELAILYSKY-KPEKMMEHL 1335 (1666)
T ss_pred eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHH------HHHHHHHHHHHHhc-CHHHHHHHH
Confidence 01223445666777777777777777776655442 44555666665443 344443333
No 304
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.27 E-value=0.22 Score=40.96 Aligned_cols=95 Identities=16% Similarity=0.236 Sum_probs=65.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhC----CHH-------HHHHHHHHHHHHHHHcCCh
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLG----DYQ-------KAMQYHKQDLTLARNMEDK 96 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g----~~~-------~A~~~~~~al~~~~~~~d~ 96 (609)
.|..++..|++-+|+++.+..+...+++.... .++...|.+++.+. +.+ .|++++.++..+ .
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~-~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L------s 74 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW-LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL------S 74 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchH-HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc------C
Confidence 36778999999999999999999887665321 45666777776543 333 345555555555 6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 97 LGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEI 129 (609)
Q Consensus 97 ~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 129 (609)
+..+..++.+|.-+...-.|+++...+++++.+
T Consensus 75 p~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 75 PDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 666777888887766666677777777666654
No 305
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=95.22 E-value=1.5 Score=46.29 Aligned_cols=178 Identities=12% Similarity=-0.027 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCH----
Q psy10738 141 RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNF---- 216 (609)
Q Consensus 141 ~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~---- 216 (609)
.....||.+++..|+ |+-|...|+.+.+-+...+-....+.++-..|.+....+..
T Consensus 209 ~q~R~LAD~aFml~D--------------------y~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k 268 (414)
T PF12739_consen 209 AQMRRLADLAFMLRD--------------------YELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAK 268 (414)
T ss_pred HHHHHHHHHHHHHcc--------------------HHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccc
Confidence 356689999999999 99999999988887655444555666777777777777743
Q ss_pred ---HHHHHHHHHHHHHHHHh-----CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HHcCCcHHHHHHHHHH
Q psy10738 217 ---KQAIYYHQERLKIAREF-----GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLA--QDLGDRAVEAQACYSL 286 (609)
Q Consensus 217 ---~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~l 286 (609)
+....+++.|+..+... .......++....+.++...|.+.+|...+-+..... .... ....+..+..+
T Consensus 269 ~~~~~~~~~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~-~~~~alllE~~ 347 (414)
T PF12739_consen 269 IRKDEIEPYLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLR-PFGSALLLEQA 347 (414)
T ss_pred cccccHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhh-hHhhHHHHHHH
Confidence 36777888887777662 2223445677778888888999888887776666542 1211 11134555566
Q ss_pred HHHH--HHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q psy10738 287 GNTY--TLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQ 352 (609)
Q Consensus 287 a~~~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~ 352 (609)
|.+| ........-..- ....+.-+..-|.-|...|+...|..+|.+|+.++..
T Consensus 348 a~~~~~~~~~~~~~~~~r-------------~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 348 AYCYASLRSNRPSPGLTR-------------FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred HHhhcccccCCCCccchh-------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 6666 111000000000 0112223334478899999999999999999999863
No 306
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.17 E-value=0.21 Score=38.18 Aligned_cols=71 Identities=24% Similarity=0.307 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q psy10738 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDK 136 (609)
Q Consensus 63 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~ 136 (609)
...-|.-++...+.++|+..++++++... +.+....++..+..+|...|+|.+++.+..+-++++.+.+++
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~---~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKIT---DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 34456666788899999999999988643 366788899999999999999999999999999999887764
No 307
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.15 E-value=0.054 Score=35.91 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 201 RACGNLGNTYYLLGNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 201 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 232 (609)
.++.++|.+|...|++++|+.++++++.+...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 45666666666666666666666666666554
No 308
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=95.08 E-value=2.2 Score=44.95 Aligned_cols=178 Identities=14% Similarity=0.022 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHc
Q psy10738 61 AIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKY-------DEAMVCCKRHLEISRQL 133 (609)
Q Consensus 61 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~-------~~A~~~~~~al~l~~~~ 133 (609)
.....||..++.+|+|+.|...|+.+..-+.........+.++-..|.+....+.. ++...+++.|+..+...
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 45678999999999999999999998887665554555677777777777777743 36777888887777662
Q ss_pred -----CCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHH--HhCChHHHHHHHHHH
Q psy10738 134 -----NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMK--EINDTAAQGRACGNL 206 (609)
Q Consensus 134 -----~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~l 206 (609)
.......++....+.++...|. +.+|...+-+.....- ... ....+..+-.+
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~--------------------~~~a~~~~~~~~~~~l~~~l~-~~~~alllE~~ 347 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGG--------------------YWEAADQLIRWTSEILESDLR-PFGSALLLEQA 347 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCc--------------------cHHHHHHHHHHHHHHHhhhhh-hHhhHHHHHHH
Confidence 2233556677778888888888 7777666655544311 111 01133344444
Q ss_pred HHHH--HHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 207 GNTY--YLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD 272 (609)
Q Consensus 207 g~~~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 272 (609)
|.+| ........-.. .....+.-+..-|.-|...|+...|..+|..++.+...
T Consensus 348 a~~~~~~~~~~~~~~~~-------------r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 348 AYCYASLRSNRPSPGLT-------------RFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred HHhhcccccCCCCccch-------------hhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 4444 11000000000 01112233444567788888888888888888877654
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.79 E-value=0.077 Score=35.15 Aligned_cols=33 Identities=39% Similarity=0.427 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHc
Q psy10738 321 RACWSLGNAHAARGNHEKALYFATKHLEISKQL 353 (609)
Q Consensus 321 ~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~ 353 (609)
.++.+||.+|...|++++|..++++++.+.+.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 466777778888888888888888877777665
No 310
>KOG1914|consensus
Probab=94.65 E-value=7.1 Score=41.31 Aligned_cols=157 Identities=10% Similarity=-0.038 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH-HHHHhC
Q psy10738 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGN-SHIFLG 254 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~-~~~~~g 254 (609)
++....++++.+.+.... ...++.++-+.-.+..-...|...|.+|.+.-... . .++..-|. -|...+
T Consensus 347 ~~~~~~~~~~ll~~~~~~-----~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~----h--hVfVa~A~mEy~csk 415 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDID-----LTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR----H--HVFVAAALMEYYCSK 415 (656)
T ss_pred hhhhHHHHHHHHhhhccC-----CceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc----c--hhhHHHHHHHHHhcC
Confidence 455566666666553221 12244444444555555667777777765532221 1 12222222 255678
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcC
Q psy10738 255 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARG 334 (609)
Q Consensus 255 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g 334 (609)
+.+-|...|+-.+....+. ...-......+...++-..|...|++++.. .-......++|...-..-...|
T Consensus 416 D~~~AfrIFeLGLkkf~d~------p~yv~~YldfL~~lNdd~N~R~LFEr~l~s---~l~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 416 DKETAFRIFELGLKKFGDS------PEYVLKYLDFLSHLNDDNNARALFERVLTS---VLSADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred ChhHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhCcchhHHHHHHHHHhc---cCChhhhHHHHHHHHHHHHhcc
Confidence 9999999999888766542 223334445667888999999999998865 1122334456666666677778
Q ss_pred ChHHHHHHHHHHHHHHHH
Q psy10738 335 NHEKALYFATKHLEISKQ 352 (609)
Q Consensus 335 ~~~~A~~~~~~al~l~~~ 352 (609)
+...+++.-++-...++.
T Consensus 487 dL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 487 DLNSILKLEKRRFTAFPA 504 (656)
T ss_pred cHHHHHHHHHHHHHhcch
Confidence 888777776666665553
No 311
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.41 E-value=2.5 Score=43.52 Aligned_cols=170 Identities=17% Similarity=-0.033 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHH------HHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--------------
Q psy10738 176 LQEAIKYYEQNLALM------KEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD-------------- 235 (609)
Q Consensus 176 ~~~A~~~~~~al~~~------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------- 235 (609)
|.++...|..++... .-+...+....++..++.++..+|+++.|.+++++|+-.....-.
T Consensus 10 Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~ 89 (360)
T PF04910_consen 10 YQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN 89 (360)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc
Confidence 666666665555432 112234556789999999999999999999999999876653110
Q ss_pred ---------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 236 ---------KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH 306 (609)
Q Consensus 236 ---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 306 (609)
......+.......+...|-+..|.++.+-.+.+.+.. |+ ..+++.+-....+.++|+--+.+++..
T Consensus 90 ~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~-DP---~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 90 CRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDE-DP---LGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred cccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC-Cc---chhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 11223466667778889999999999999988887753 33 234444555566778888777777765
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHcCCh---------------HHHHHHHHHHHHHH
Q psy10738 307 LIIAQQLMDRVGEGRACWSLGNAHAARGNH---------------EKALYFATKHLEIS 350 (609)
Q Consensus 307 l~~~~~~~~~~~~~~~~~~La~~~~~~g~~---------------~~A~~~~~~al~l~ 350 (609)
....... .........+.++.++..+++. ++|...+.+|+..+
T Consensus 166 ~~~~~~~-~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 166 LAKCYRN-WLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred hhhhhhh-hhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 4421100 0001224667788888888888 89999999999877
No 312
>KOG4814|consensus
Probab=94.40 E-value=8.9 Score=41.38 Aligned_cols=108 Identities=15% Similarity=0.007 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHH
Q psy10738 99 EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQE 178 (609)
Q Consensus 99 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 178 (609)
....+++-|.-++...+|..++++|...+...+........+....+++.+|..+.+ +++
T Consensus 353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~Q--------------------LD~ 412 (872)
T KOG4814|consen 353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQ--------------------LDN 412 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHH--------------------HHH
Confidence 345667778888889999999999999998777555455668899999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 179 AIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 179 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 232 (609)
|.+++++|-+.- +........+-.+....|+-++|+.+..+.......
T Consensus 413 A~E~~~EAE~~d------~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 413 AVEVYQEAEEVD------RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred HHHHHHHHHhhc------cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 999999987762 222334444555666778889999988877665443
No 313
>KOG1538|consensus
Probab=94.38 E-value=2.3 Score=45.56 Aligned_cols=50 Identities=4% Similarity=0.039 Sum_probs=27.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 208 NTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRT 266 (609)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 266 (609)
.++...++|++|....++--++ ...+|+-.|..+....++++|.+.|.+|
T Consensus 781 qlHve~~~W~eAFalAe~hPe~---------~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEF---------KDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hheeecccchHhHhhhhhCccc---------cccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 3445566666665544332111 1125666666666777777776666554
No 314
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.22 E-value=3 Score=42.92 Aligned_cols=175 Identities=10% Similarity=-0.021 Sum_probs=108.7
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHh
Q psy10738 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVC 175 (609)
Q Consensus 96 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 175 (609)
.|....++..++.++..+|++..|.+.+++|+-..... ....+..-..-...|. ... +
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~------~~~~F~~~~~~~~~g~--~rL----~---------- 93 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERA------FHPSFSPFRSNLTSGN--CRL----D---------- 93 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH------HHHHhhhhhcccccCc--ccc----C----------
Confidence 67778899999999999999999999999998776621 1111100000011111 000 0
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCC
Q psy10738 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGE 255 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 255 (609)
|. ...+.....++..........|-+..|.++.+-.+.+.+.. |+.. +.+.+-...++.++
T Consensus 94 ~~---------------~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~-DP~g---~ll~ID~~ALrs~~ 154 (360)
T PF04910_consen 94 YR---------------RPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDE-DPLG---VLLFIDYYALRSRQ 154 (360)
T ss_pred Cc---------------cccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC-Ccch---hHHHHHHHHHhcCC
Confidence 00 00122233455566677788999999999999988887653 3222 44445555667788
Q ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCH---------------HHHHHHHHHHHHHHHH
Q psy10738 256 YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY---------------PTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 256 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~~~ 312 (609)
|+--++.++......... .........+..+.++...++- ++|...+.+|+...+.
T Consensus 155 y~~Li~~~~~~~~~~~~~-~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 155 YQWLIDFSESPLAKCYRN-WLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHHHHhHhhhhhhh-hhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 877777766544421100 0001234667777888888887 8999999999988876
No 315
>KOG0686|consensus
Probab=94.22 E-value=3.6 Score=41.80 Aligned_cols=124 Identities=15% Similarity=0.085 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 220 IYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA 299 (609)
Q Consensus 220 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 299 (609)
.+-++.-++..+....+.....++..+|.-|...|+++.|++.|-++-......+ .....+.++-.+-..+|+|..-
T Consensus 130 le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~k---hvInm~ln~i~VSI~~~nw~hv 206 (466)
T KOG0686|consen 130 LEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAK---HVINMCLNLILVSIYMGNWGHV 206 (466)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchH---HHHHHHHHHHHHHHhhcchhhh
Confidence 3444444555555555666788999999999999999999999999877765542 3566777888888889999988
Q ss_pred HHHHHHHHHHHHHhc--chhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy10738 300 IDYHLRHLIIAQQLM--DRVGEGRACWSLGNAHAARGNHEKALYFATKH 346 (609)
Q Consensus 300 ~~~~~~al~~~~~~~--~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~a 346 (609)
..+..+|........ .......+...-|.+...+++|+.|..++-.+
T Consensus 207 ~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 207 LSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 888888876631100 01112234445556666677888888876554
No 316
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.06 E-value=0.8 Score=37.72 Aligned_cols=104 Identities=12% Similarity=0.087 Sum_probs=61.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
.+.-++..|++-+|++..+..+....+..+ ....+..-|.++..++. ..+.|+-...-+-.|++.+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~---~~~lh~~QG~if~~lA~---------~ten~d~k~~yLl~sve~~s~ 69 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDES---SWLLHRLQGTIFYKLAK---------KTENPDVKFRYLLGSVECFSR 69 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCc---hHHHHHHHhHHHHHHHH---------hccCchHHHHHHHHhHHHHHH
Confidence 356677888888888888887765543322 22566667777776665 223444455556677777777
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10738 186 NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERL 227 (609)
Q Consensus 186 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 227 (609)
+..+ .+..+..++.+|.-+-....|+++..-.++++
T Consensus 70 a~~L------sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 70 AVEL------SPDSAHSLFELASQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred Hhcc------ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 7766 34445566666554443344444444444443
No 317
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.83 E-value=16 Score=42.34 Aligned_cols=105 Identities=11% Similarity=0.055 Sum_probs=82.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
..++.....|+.|+..|++.-..-|+-.+.. ++.+.+|......-.-..--+.+.+|+.......+.+...--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGY-EAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccch-HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHH
Confidence 5667777899999999999998888654432 467778877766533333336788888888888778888888899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcC
Q psy10738 109 TLKVMGKYDEAMVCCKRHLEISRQLN 134 (609)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~l~~~~~ 134 (609)
+|..+|+|++-+++|.-|++-+++..
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999998776543
No 318
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=3.3 Score=40.46 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHH---------------HHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQ---------------DLTL 89 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~---------------al~~ 89 (609)
.+.++..+...|++.+|...|..++...|++. .+...++.+|...|+.+.|...+.. -+++
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~----~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENS----EAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccc----hHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 34457788999999999999999999999874 4778899999999999888776643 1222
Q ss_pred HHHc-------------CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 90 ARNM-------------EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 90 ~~~~-------------~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
..+. ...|....+-+.+|..+...|+.+.|++.+-..+....
T Consensus 213 l~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 213 LEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred HHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 2222 12344566777888888888888888887766665544
No 319
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.67 E-value=0.079 Score=32.97 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEIS 130 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 130 (609)
+++.+|.++...|++++|+..+++.++..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 44555555555555555555555555443
No 320
>KOG0686|consensus
Probab=93.61 E-value=7.1 Score=39.79 Aligned_cols=108 Identities=20% Similarity=0.300 Sum_probs=75.1
Q ss_pred cHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCC
Q psy10738 136 KLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGN 215 (609)
Q Consensus 136 ~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 215 (609)
+...-.++..+|.-|...|+ ++.|++.|-++...+... ...+..+.++-.+-..+|+
T Consensus 146 KEsiRra~~Dl~dhy~~cG~--------------------l~~Alr~YsR~RdYCTs~---khvInm~ln~i~VSI~~~n 202 (466)
T KOG0686|consen 146 KESIRRALEDLGDHYLDCGQ--------------------LDNALRCYSRARDYCTSA---KHVINMCLNLILVSIYMGN 202 (466)
T ss_pred hHHHHHHHHHHHHHHHHhcc--------------------HHHHHhhhhhhhhhhcch---HHHHHHHHHHHHHHHhhcc
Confidence 34556788899999999999 999999998877776543 4456677788888888899
Q ss_pred HHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 216 FKQAIYYHQERLKIAREFGD--KAAERRANSNLGNSHIFLGEYQAASEHYKRT 266 (609)
Q Consensus 216 ~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 266 (609)
|..-..+..+|......... ......+...-|.+.+.+++|..|..++-.+
T Consensus 203 w~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 203 WGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 98888888887665311110 1111234455566666677888888887654
No 321
>KOG1308|consensus
Probab=93.44 E-value=0.021 Score=56.03 Aligned_cols=120 Identities=14% Similarity=0.066 Sum_probs=55.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 213 LGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL 292 (609)
Q Consensus 213 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 292 (609)
.|.+++|++.+..++.+.+.... .|...+.+++.+++...|+.-+..++.+.++. +.-|-..|.+...
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~------l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds------a~~ykfrg~A~rl 194 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAI------LYAKRASVFLKLKKPNAAIRDCDFAIEINPDS------AKGYKFRGYAERL 194 (377)
T ss_pred CcchhhhhcccccccccCCchhh------hcccccceeeeccCCchhhhhhhhhhccCccc------ccccchhhHHHHH
Confidence 34455555555555544333222 44455555555555555555555555544442 3333344444455
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy10738 293 LRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFAT 344 (609)
Q Consensus 293 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~ 344 (609)
+|++++|..++..+.++.-.-........+.-+...+-...+.++.+.+.-+
T Consensus 195 lg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~e~~ 246 (377)
T KOG1308|consen 195 LGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERAREERE 246 (377)
T ss_pred hhchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHHHhc
Confidence 5555555555555544433322223333344444444444444444444443
No 322
>KOG0376|consensus
Probab=93.38 E-value=0.083 Score=54.43 Aligned_cols=96 Identities=15% Similarity=0.089 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHH
Q psy10738 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRA 142 (609)
Q Consensus 63 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~ 142 (609)
+-.-+...+.-+.|+.|+..|.+|+++ .+..+..+.+.+..+...++|..|+.-+.+|+++.+ ....+
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~l------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP------~~~K~ 74 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIEL------DPNCAIYFANRALAHLKVESFGGALHDALKAIELDP------TYIKA 74 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhc------CCcceeeechhhhhheeechhhhHHHHHHhhhhcCc------hhhhe
Confidence 345567778889999999999999999 888898999999999999999999999999999886 77889
Q ss_pred HHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH
Q psy10738 143 LYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 143 ~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 190 (609)
|+..|.++...+. +.+|...|+....+.
T Consensus 75 Y~rrg~a~m~l~~--------------------~~~A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 75 YVRRGTAVMALGE--------------------FKKALLDLEKVKKLA 102 (476)
T ss_pred eeeccHHHHhHHH--------------------HHHHHHHHHHhhhcC
Confidence 9999999999999 999999998877764
No 323
>KOG2908|consensus
Probab=93.36 E-value=9.3 Score=38.03 Aligned_cols=100 Identities=8% Similarity=-0.051 Sum_probs=67.8
Q ss_pred HhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhh--HHHHHHHHHHH
Q psy10738 252 FLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVG--EGRACWSLGNA 329 (609)
Q Consensus 252 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~La~~ 329 (609)
..++.++|++++++..+.......+.........+|.++...|+..++.+.+...-....+...... ....|..-+..
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqY 166 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQY 166 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHH
Confidence 4457788888888887777776666566666777788888888888888888777776666544222 33344444566
Q ss_pred HHHcCChHHHHHHHHHHHHHHH
Q psy10738 330 HAARGNHEKALYFATKHLEISK 351 (609)
Q Consensus 330 ~~~~g~~~~A~~~~~~al~l~~ 351 (609)
|...|++..+..+.-+.+....
T Consensus 167 yk~~~d~a~yYr~~L~YL~~~d 188 (380)
T KOG2908|consen 167 YKKIGDFASYYRHALLYLGCSD 188 (380)
T ss_pred HHHHHhHHHHHHHHHHHhcccc
Confidence 7777888777666666665543
No 324
>KOG0890|consensus
Probab=93.22 E-value=22 Score=44.58 Aligned_cols=130 Identities=12% Similarity=-0.044 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCC
Q psy10738 217 KQAIYYHQERLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD 295 (609)
Q Consensus 217 ~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 295 (609)
.+-+-.+++++-..... +-....+.+|...|.+....|+++.|..++-+|.+.- .+.++...|..++..|+
T Consensus 1646 ~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--------~~~i~~E~AK~lW~~gd 1717 (2382)
T KOG0890|consen 1646 KEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--------LPEIVLERAKLLWQTGD 1717 (2382)
T ss_pred HhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--------cchHHHHHHHHHHhhcc
Confidence 34444445544433322 3355667799999999999999999988888776644 25678888999999999
Q ss_pred HHHHHHHHHHHHHHHHHh-cc----------hhhHHHHHHHHHHHHHHcCChH--HHHHHHHHHHHHHHHcC
Q psy10738 296 YPTAIDYHLRHLIIAQQL-MD----------RVGEGRACWSLGNAHAARGNHE--KALYFATKHLEISKQLG 354 (609)
Q Consensus 296 ~~~A~~~~~~al~~~~~~-~~----------~~~~~~~~~~La~~~~~~g~~~--~A~~~~~~al~l~~~~~ 354 (609)
-..|+..+++.+...... .. ......+...++......|+++ .-+.+|..+.++..+-.
T Consensus 1718 ~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe 1789 (2382)
T KOG0890|consen 1718 ELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWE 1789 (2382)
T ss_pred HHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccccc
Confidence 999999999988654332 11 1112235566666666777643 45567777777765433
No 325
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.17 E-value=4.2 Score=39.77 Aligned_cols=152 Identities=19% Similarity=0.150 Sum_probs=97.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q psy10738 204 GNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQAC 283 (609)
Q Consensus 204 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 283 (609)
..-+.-....|++.+|...+..++...++..+ +...++.+|...|+.+.|...+...-.-... . ....+
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~------~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~---~--~~~~l 206 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPENSE------AKLLLAECLLAAGDVEAAQAILAALPLQAQD---K--AAHGL 206 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcccch------HHHHHHHHHHHcCChHHHHHHHHhCcccchh---h--HHHHH
Confidence 34455667889999999999999999988876 8889999999999999998877653221111 0 11111
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHH
Q psy10738 284 YSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQ 363 (609)
Q Consensus 284 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~ 363 (609)
...-..+.......+....-.+ .........+-+.+|..+...|+.+.|.+.+-..+...... ....++
T Consensus 207 ~a~i~ll~qaa~~~~~~~l~~~-------~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~----~d~~~R 275 (304)
T COG3118 207 QAQIELLEQAAATPEIQDLQRR-------LAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF----EDGEAR 275 (304)
T ss_pred HHHHHHHHHHhcCCCHHHHHHH-------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc----cCcHHH
Confidence 1111222222222222221111 11122345678899999999999999999887766644322 234566
Q ss_pred HHHHHHHHHcCCCC
Q psy10738 364 MNVTDLRKALGMST 377 (609)
Q Consensus 364 ~~la~l~~~~g~~~ 377 (609)
..+-++....|..+
T Consensus 276 k~lle~f~~~g~~D 289 (304)
T COG3118 276 KTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHHhcCCCC
Confidence 77778888888543
No 326
>KOG1538|consensus
Probab=92.99 E-value=16 Score=39.61 Aligned_cols=189 Identities=12% Similarity=0.116 Sum_probs=98.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q psy10738 64 SQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRAL 143 (609)
Q Consensus 64 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~ 143 (609)
..++..+...|+|.+|.+.|.+.=.-.+... ...-.-.+..+.-+...|.-++-.....+-.+-+...+.+..
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlE--myTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePka----- 708 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALE--MYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKA----- 708 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHH--HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHH-----
Confidence 3467777778888888777764321111000 000011233445555555555555444444444444444332
Q ss_pred HHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHH------HHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHH
Q psy10738 144 YNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY------YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFK 217 (609)
Q Consensus 144 ~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~------~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 217 (609)
.|..+...|+ .++|+.. .+-++++..++.. .....+..++..+..+..+.
T Consensus 709 --AAEmLiSaGe--------------------~~KAi~i~~d~gW~d~lidI~rkld~--~ere~l~~~a~ylk~l~~~g 764 (1081)
T KOG1538|consen 709 --AAEMLISAGE--------------------HVKAIEICGDHGWVDMLIDIARKLDK--AEREPLLLCATYLKKLDSPG 764 (1081)
T ss_pred --HHHHhhcccc--------------------hhhhhhhhhcccHHHHHHHHHhhcch--hhhhHHHHHHHHHhhccccc
Confidence 2344555666 6666543 2334444444321 12234444555555555555
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHH
Q psy10738 218 QAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP 297 (609)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 297 (609)
-|.+.|.+. ++ ...+-.++...+++.+|....++.-+.. ..+++-.|..+....+++
T Consensus 765 LAaeIF~k~-------gD-------~ksiVqlHve~~~W~eAFalAe~hPe~~---------~dVy~pyaqwLAE~DrFe 821 (1081)
T KOG1538|consen 765 LAAEIFLKM-------GD-------LKSLVQLHVETQRWDEAFALAEKHPEFK---------DDVYMPYAQWLAENDRFE 821 (1081)
T ss_pred hHHHHHHHh-------cc-------HHHHhhheeecccchHhHhhhhhCcccc---------ccccchHHHHhhhhhhHH
Confidence 555555442 33 1224456777788888876665443332 335666677777777888
Q ss_pred HHHHHHHHH
Q psy10738 298 TAIDYHLRH 306 (609)
Q Consensus 298 ~A~~~~~~a 306 (609)
+|.+.|.+|
T Consensus 822 EAqkAfhkA 830 (1081)
T KOG1538|consen 822 EAQKAFHKA 830 (1081)
T ss_pred HHHHHHHHh
Confidence 887777654
No 327
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.98 E-value=0.21 Score=30.93 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCc
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQAGTD 54 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~ 54 (609)
+..|.++...|++++|+..|+++++..|+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34455555566666666666666555553
No 328
>KOG4014|consensus
Probab=92.92 E-value=2.3 Score=38.28 Aligned_cols=95 Identities=17% Similarity=0.147 Sum_probs=63.3
Q ss_pred CCHHHHH-HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q psy10738 74 GDYQKAM-QYHKQDLTLARNMEDKLGEAKSSGNLGNTLKV-----MGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLG 147 (609)
Q Consensus 74 g~~~~A~-~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~-----~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg 147 (609)
|+|-+++ +.|+.|..+++..-+....+...+.+|..+.. .++...|++++..+-+. ....+..++|
T Consensus 41 gdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--------n~~~aC~~~g 112 (248)
T KOG4014|consen 41 GDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--------NIPQACRYLG 112 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--------CCHHHHhhhh
Confidence 3443333 35666667777776677778888888876653 35788999999887763 3455777888
Q ss_pred HHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 148 NVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 148 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
.+++.-.. +.++-.+..+|.+++.++-.+
T Consensus 113 Ll~~~g~~-------------~r~~dpd~~Ka~~y~traCdl 141 (248)
T KOG4014|consen 113 LLHWNGEK-------------DRKADPDSEKAERYMTRACDL 141 (248)
T ss_pred hhhccCcC-------------CccCCCCcHHHHHHHHHhccC
Confidence 77765433 223333478999999888664
No 329
>KOG4014|consensus
Probab=92.87 E-value=2.1 Score=38.53 Aligned_cols=149 Identities=17% Similarity=0.219 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh---
Q psy10738 182 YYEQNLALMKEINDTAAQGRACGNLGNTYYL-----LGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL--- 253 (609)
Q Consensus 182 ~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--- 253 (609)
-|++|.++++..-+....+...+.+|..+.. .++...|+++++.+-+. +. ..+..++|.++..-
T Consensus 50 nF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----n~----~~aC~~~gLl~~~g~~~ 121 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----NI----PQACRYLGLLHWNGEKD 121 (248)
T ss_pred HHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----CC----HHHHhhhhhhhccCcCC
Confidence 4555555666555555556667777765553 45788899998887652 11 22666777776643
Q ss_pred --C--CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHh------------------------CCHHHHHHHHHH
Q psy10738 254 --G--EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL------------------------RDYPTAIDYHLR 305 (609)
Q Consensus 254 --g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~------------------------g~~~~A~~~~~~ 305 (609)
+ +.++|.+++.++-++.. +.+++.|...|..- .+.++|.++..+
T Consensus 122 r~~dpd~~Ka~~y~traCdl~~--------~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~k 193 (248)
T KOG4014|consen 122 RKADPDSEKAERYMTRACDLED--------GEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIK 193 (248)
T ss_pred ccCCCCcHHHHHHHHHhccCCC--------chHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHH
Confidence 2 36788888888766432 34555555555432 345566666555
Q ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHcC
Q psy10738 306 HLIIAQQLMDRVGEGRACWSLGNAHAAR----GNHEKALYFATKHLEISKQLG 354 (609)
Q Consensus 306 al~~~~~~~~~~~~~~~~~~La~~~~~~----g~~~~A~~~~~~al~l~~~~~ 354 (609)
|-++ ....++.++++.|..- .+.++|..+-.+|.++.+++.
T Consensus 194 ACel--------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~ 238 (248)
T KOG4014|consen 194 ACEL--------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELR 238 (248)
T ss_pred HHhc--------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 5543 2345677777777542 367899999999999887654
No 330
>KOG2041|consensus
Probab=92.78 E-value=17 Score=39.63 Aligned_cols=80 Identities=24% Similarity=0.276 Sum_probs=44.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH---cCChhhHHHHHH
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARN---MEDKLGEAKSSG 104 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~d~~~~~~a~~ 104 (609)
+|++-.--|+|++|...|-.+-.. |. --..+..+|+|-... ++.+. ..|+...-.++.
T Consensus 740 ~aei~~~~g~feeaek~yld~drr---DL---------Aielr~klgDwfrV~-------qL~r~g~~d~dD~~~e~A~r 800 (1189)
T KOG2041|consen 740 RAEISAFYGEFEEAEKLYLDADRR---DL---------AIELRKKLGDWFRVY-------QLIRNGGSDDDDEGKEDAFR 800 (1189)
T ss_pred hHhHhhhhcchhHhhhhhhccchh---hh---------hHHHHHhhhhHHHHH-------HHHHccCCCcchHHHHHHHH
Confidence 355555667777777776544221 10 012233444443333 33333 334555667777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRH 126 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~a 126 (609)
++|..+..+-.+++|.++|...
T Consensus 801 ~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 801 NIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777777777777777654
No 331
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=92.70 E-value=9.9 Score=36.57 Aligned_cols=189 Identities=16% Similarity=0.114 Sum_probs=105.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFY-LGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
++..|..+...|+|++.+.++++++..+++-.. .=...++.+|-. .|....+...+......-...+.....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~---eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~---- 76 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTE---EERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQV---- 76 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHH----
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCH---HHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHH----
Confidence 455688899999999999999999998664211 122344444432 244444444443333322211111111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQ-----LNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQE 178 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~-----~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 178 (609)
.+..-|.. .=-++=...+...+.+... ..+....+..+-..|..|...-.. ...++.....++
T Consensus 77 -~~i~~yk~-kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~----------~~~~~~~~~~~~ 144 (236)
T PF00244_consen 77 -KLIKDYKK-KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEF----------DSGDEKKEAAEK 144 (236)
T ss_dssp -HHHHHHHH-HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHHH
T ss_pred -HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcccccccccc----------ccchhhHHHHHH
Confidence 11111111 1123344555666655443 233334444555677777766541 112234455789
Q ss_pred HHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHH
Q psy10738 179 AIKYYEQNLALMKEI--NDTAAQGRACGNLGNTY-YLLGNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 179 A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~~~ 232 (609)
|...|++|+.++... ..+|.......|.+..| ..+|+.++|+...++++..+..
T Consensus 145 a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~ 201 (236)
T PF00244_consen 145 ALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAIS 201 (236)
T ss_dssp HHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 999999999999883 33444445555555555 4589999999999998877654
No 332
>KOG1497|consensus
Probab=92.60 E-value=11 Score=37.06 Aligned_cols=128 Identities=12% Similarity=-0.009 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q psy10738 237 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLA--QDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM 314 (609)
Q Consensus 237 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 314 (609)
...+.+...||.+|...++|..|...+.-. ... +...+.......+..+|.+|...++..+|..+..++--......
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~ 178 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESS 178 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccc
Confidence 344667888999999999999988766422 111 11123334567888999999999999999999988765555445
Q ss_pred chhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q psy10738 315 DRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVT 367 (609)
Q Consensus 315 ~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la 367 (609)
+.......-...|++.-..+++-+|...|-+... .++++.....+++....
T Consensus 179 Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~--~ki~~e~~~~~aL~~a~ 229 (399)
T KOG1497|consen 179 NEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ--RKIVDESERLEALKKAL 229 (399)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcchHHHHHHHHHhH
Confidence 5555555555567777788888777766664433 33344444444444333
No 333
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=92.47 E-value=2.9 Score=42.61 Aligned_cols=105 Identities=11% Similarity=0.122 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCC-------------cch-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGT-------------DDL-RTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTL 89 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-------------~~~-~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 89 (609)
.-+..|...+++++|..|..-|..||++.. +|. .....+--.+..||..+++.+-|+....+.+.+
T Consensus 178 vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l 257 (569)
T PF15015_consen 178 VALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL 257 (569)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc
Confidence 334458899999999999999999998722 111 123456678899999999999999999999888
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q psy10738 90 ARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLN 134 (609)
Q Consensus 90 ~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 134 (609)
.|....-+...|.++..+.+|.+|...+.-+.-++--.+
T Consensus 258 ------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g 296 (569)
T PF15015_consen 258 ------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSG 296 (569)
T ss_pred ------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 788888889999999999999999988877766655444
No 334
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.26 E-value=3.4 Score=43.77 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=44.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
=......|+++++....... ++-|.-+ ......++..+...|-++.|+...+.- ...+.
T Consensus 268 fk~av~~~d~~~v~~~i~~~-~ll~~i~---~~~~~~i~~fL~~~G~~e~AL~~~~D~--------------~~rFe--- 326 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAAS-NLLPNIP---KDQGQSIARFLEKKGYPELALQFVTDP--------------DHRFE--- 326 (443)
T ss_dssp HHHHHHTT-HHH-----HHH-HTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS-H--------------HHHHH---
T ss_pred HHHHHHcCChhhhhhhhhhh-hhcccCC---hhHHHHHHHHHHHCCCHHHHHhhcCCh--------------HHHhH---
Confidence 34566778888877776422 1112111 113456677777888888777653321 11122
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccc
Q psy10738 109 TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK 155 (609)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~ 155 (609)
+....|+++.|.+..++ .. ....|..||......|+
T Consensus 327 LAl~lg~L~~A~~~a~~-------~~----~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKE-------LD----DPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHCT-HHHHHHHCCC-------CS----THHHHHHHHHHHHHTTB
T ss_pred HHHhcCCHHHHHHHHHh-------cC----cHHHHHHHHHHHHHcCC
Confidence 22455666665554322 21 12256667777777776
No 335
>KOG3824|consensus
Probab=92.05 E-value=0.45 Score=46.15 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=57.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
-+..|....+.|+.++|..+|+.|+.+.|.+++ ++..+|......++.-+|-.+|-+|+.+ .+...+++.
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~----~L~e~G~f~E~~~~iv~ADq~Y~~ALti------sP~nseALv 188 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ----ILIEMGQFREMHNEIVEADQCYVKALTI------SPGNSEALV 188 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHH----HHHHHhHHHHhhhhhHhhhhhhheeeee------CCCchHHHh
Confidence 334466777888888888888888888888765 7777888887778888888888888888 666666666
Q ss_pred HHHHH
Q psy10738 105 NLGNT 109 (609)
Q Consensus 105 ~lg~~ 109 (609)
+.+..
T Consensus 189 nR~RT 193 (472)
T KOG3824|consen 189 NRART 193 (472)
T ss_pred hhhcc
Confidence 65543
No 336
>KOG4507|consensus
Probab=91.96 E-value=0.44 Score=50.24 Aligned_cols=96 Identities=18% Similarity=0.190 Sum_probs=82.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLG 107 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg 107 (609)
.|..+...|+...|+.++..|+...|.... ....+|+++....|-...|-.++.+++.+ .......++.+|
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~---v~~v~la~~~~~~~~~~da~~~l~q~l~~------~~sepl~~~~~g 683 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQD---VPLVNLANLLIHYGLHLDATKLLLQALAI------NSSEPLTFLSLG 683 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhc---ccHHHHHHHHHHhhhhccHHHHHHHHHhh------cccCchHHHhcc
Confidence 377788899999999999999998885432 24678899999999889999999999998 455667889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 108 NTLKVMGKYDEAMVCCKRHLEISRQ 132 (609)
Q Consensus 108 ~~~~~~g~~~~A~~~~~~al~l~~~ 132 (609)
+.|..+.+.+.|++.++.|++..+.
T Consensus 684 ~~~l~l~~i~~a~~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 684 NAYLALKNISGALEAFRQALKLTTK 708 (886)
T ss_pred hhHHHHhhhHHHHHHHHHHHhcCCC
Confidence 9999999999999999999998763
No 337
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.58 E-value=19 Score=37.42 Aligned_cols=142 Identities=11% Similarity=-0.008 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLS-AIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
+-+..+|..+.+++++.+|...|.+..+.....+.... .++..+-.-.+.+++.+.-. ..+...++. .+....
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me----~~l~~l~~~--~~~s~~ 80 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLME----KQLMELRQQ--FGKSAY 80 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHH----HHHHHHHHh--cCCchH
Confidence 34556799999999999999999999887665543332 34443333333344444433 333333322 234456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHH---------HHHHHHHHHHHHHcccccccCCCCCCCCCchHh
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE---------GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEV 172 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~---------~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~ 172 (609)
.....|...+..+.|.+|+..+...-+.......+... ...-...+.++...|.
T Consensus 81 l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~----------------- 143 (549)
T PF07079_consen 81 LPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGR----------------- 143 (549)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCC-----------------
Confidence 66778889999999999998876554443322222111 1122345777888898
Q ss_pred HHhHHHHHHHHHHHHHHH
Q psy10738 173 KVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 173 ~~~~~~A~~~~~~al~~~ 190 (609)
|.++...+++.+...
T Consensus 144 ---f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 144 ---FSEGRAILNRIIERL 158 (549)
T ss_pred ---cchHHHHHHHHHHHH
Confidence 888888887776654
No 338
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.28 E-value=21 Score=37.21 Aligned_cols=165 Identities=13% Similarity=0.012 Sum_probs=94.7
Q ss_pred ChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q psy10738 195 DTAAQGRACGNLGNTYYLLGN-FKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL 273 (609)
Q Consensus 195 ~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 273 (609)
|....+.-+...|.-++..|. -++|+..++.++...+. |......+....-..|... --..++..+-+......+.
T Consensus 374 DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~y--D~ec~n~v~~fvKq~Y~qa-Ls~~~~~rLlkLe~fi~e~ 450 (549)
T PF07079_consen 374 DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNY--DIECENIVFLFVKQAYKQA-LSMHAIPRLLKLEDFITEV 450 (549)
T ss_pred cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHhc
Confidence 455566677777888888888 78889888888776442 1111111111111111110 0011222222222222232
Q ss_pred CCcH---HHHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy10738 274 GDRA---VEAQACYSL--GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLE 348 (609)
Q Consensus 274 ~~~~---~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 348 (609)
+-+. .....-..| |..++..|+|.++.-|-.-..++++. ..++..+|.+.....+|++|..++.+.=
T Consensus 451 gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS-------~~~~RLlGl~l~e~k~Y~eA~~~l~~LP- 522 (549)
T PF07079_consen 451 GLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS-------PQAYRLLGLCLMENKRYQEAWEYLQKLP- 522 (549)
T ss_pred CCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc-------HHHHHHHHHHHHHHhhHHHHHHHHHhCC-
Confidence 2111 122233333 55677899999999998888888764 5689999999999999999988876521
Q ss_pred HHHHcCCCchHHHHHHHHHHHHHHcC
Q psy10738 349 ISKQLGDPLGQVTAQMNVTDLRKALG 374 (609)
Q Consensus 349 l~~~~~~~~~~~~a~~~la~l~~~~g 374 (609)
.++......+...++-+++.+.
T Consensus 523 ----~n~~~~dskvqKAl~lCqKh~~ 544 (549)
T PF07079_consen 523 ----PNERMRDSKVQKALALCQKHLP 544 (549)
T ss_pred ----CchhhHHHHHHHHHHHHHHhhh
Confidence 1333344555666666665443
No 339
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.08 E-value=19 Score=36.48 Aligned_cols=83 Identities=5% Similarity=-0.048 Sum_probs=46.3
Q ss_pred HHHHHHHHhCCcchhHHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q psy10738 43 AFFQAAIQAGTDDLRTLSAIYSQLGNAYFY--------LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG 114 (609)
Q Consensus 43 ~~~~~al~~~~~~~~~~a~~~~~lg~~~~~--------~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g 114 (609)
.-|++.+..+|.|...........-..... ..-.+.-+.++++|++. .+.....+..+-.......
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~------np~~~~L~l~~l~~~~~~~ 79 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH------NPDSERLLLGYLEEGEKVW 79 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhC
Confidence 456778888898866333322222222211 11245566778888777 3344444444444555666
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy10738 115 KYDEAMVCCKRHLEISR 131 (609)
Q Consensus 115 ~~~~A~~~~~~al~l~~ 131 (609)
+-++...-+++++...+
T Consensus 80 ~~~~l~~~we~~l~~~~ 96 (321)
T PF08424_consen 80 DSEKLAKKWEELLFKNP 96 (321)
T ss_pred CHHHHHHHHHHHHHHCC
Confidence 77777777777766543
No 340
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.76 E-value=11 Score=33.99 Aligned_cols=149 Identities=13% Similarity=0.046 Sum_probs=94.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHH
Q psy10738 107 GNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQN 186 (609)
Q Consensus 107 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 186 (609)
|..|+..+.-+.+-..|..++++... ++ .++|+..|...
T Consensus 46 gy~yw~~s~as~sgd~flaAL~lA~~---------------------~k--------------------~d~Alaaf~~l 84 (221)
T COG4649 46 GYTYWQTSRASKSGDAFLAALKLAQE---------------------NK--------------------TDDALAAFTDL 84 (221)
T ss_pred eeehhcccccccchHHHHHHHHHHHc---------------------CC--------------------chHHHHHHHHH
Confidence 45566667777777777777776652 22 45555544432
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 187 LALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAA-ERRANSNLGNSHIFLGEYQAASEHYKR 265 (609)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 265 (609)
++.+....-..+....|.+....|+...|+.+|.++-...+ .+.. .-.+...-+.++...|-|+.-....+.
T Consensus 85 ----ektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~---~P~~~rd~ARlraa~lLvD~gsy~dV~srvep 157 (221)
T COG4649 85 ----EKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS---IPQIGRDLARLRAAYLLVDNGSYDDVSSRVEP 157 (221)
T ss_pred ----HhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC---CcchhhHHHHHHHHHHHhccccHHHHHHHhhh
Confidence 22333333345677788889999999999999987644322 1111 122455566777888888765543322
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy10738 266 TLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 308 (609)
Q Consensus 266 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 308 (609)
+. .........+...||..-++.|++.+|..+|.....
T Consensus 158 ---La--~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 158 ---LA--GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ---cc--CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 11 123344566778889999999999999999987554
No 341
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.48 E-value=0.61 Score=30.37 Aligned_cols=32 Identities=31% Similarity=0.280 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHc
Q psy10738 322 ACWSLGNAHAARGNHEKALYFATKHLEISKQL 353 (609)
Q Consensus 322 ~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~ 353 (609)
++..||.+-...++|++|+.-|++++++.+++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 56667777777777777777777777766554
No 342
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.14 E-value=1.5 Score=31.02 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTL 89 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 89 (609)
+++.+|..++.+|+|++|..+.+.++++
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 5677777778888888888888877777
No 343
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.04 E-value=0.36 Score=28.90 Aligned_cols=28 Identities=39% Similarity=0.713 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 202 ACGNLGNTYYLLGNFKQAIYYHQERLKI 229 (609)
Q Consensus 202 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 229 (609)
++..+|.++...|++++|+.++++++++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4566677777777777777777666654
No 344
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=89.93 E-value=0.3 Score=29.28 Aligned_cols=28 Identities=39% Similarity=0.617 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEI 129 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l 129 (609)
++..+|.++...|+++.|..++.+++++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4556666666666666666666666544
No 345
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.52 E-value=4.2 Score=36.13 Aligned_cols=82 Identities=15% Similarity=0.022 Sum_probs=65.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
+.........++.+++..++...-.+.|+.+. +-..-|+++...|+|.+|+..++...+- .+....+--.
T Consensus 14 ie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e----~~~~~~~l~i~r~~w~dA~rlLr~l~~~------~~~~p~~kAL 83 (160)
T PF09613_consen 14 IEVLSVALRLGDPDDAEALLDALRVLRPEFPE----LDLFDGWLHIVRGDWDDALRLLRELEER------APGFPYAKAL 83 (160)
T ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCchH----HHHHHHHHHHHhCCHHHHHHHHHHHhcc------CCCChHHHHH
Confidence 33455667788999999999988888998754 6677899999999999999999987554 5666667777
Q ss_pred HHHHHHHcCCHH
Q psy10738 106 LGNTLKVMGKYD 117 (609)
Q Consensus 106 lg~~~~~~g~~~ 117 (609)
++.|+..+|+.+
T Consensus 84 lA~CL~~~~D~~ 95 (160)
T PF09613_consen 84 LALCLYALGDPS 95 (160)
T ss_pred HHHHHHHcCChH
Confidence 888888888753
No 346
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=89.48 E-value=22 Score=34.75 Aligned_cols=143 Identities=13% Similarity=0.032 Sum_probs=70.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHH
Q psy10738 107 GNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQN 186 (609)
Q Consensus 107 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 186 (609)
+..+...|++..|.+...-.++...+.+...... ...++..+....+.. -..-..+..++
T Consensus 17 a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~-~~~rl~~l~~~~~~~-------------------~p~r~~fi~~a 76 (260)
T PF04190_consen 17 ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEE-SIARLIELISLFPPE-------------------EPERKKFIKAA 76 (260)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHH-HHHHHHHHHHHS-TT--------------------TTHHHHHHHH
T ss_pred HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCC-------------------cchHHHHHHHH
Confidence 3444555566666666655555555544333222 224555555555430 11234455556
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------HHHHhCChHHHHHHHHHHHHHHHHhCC
Q psy10738 187 LALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLK-----------IAREFGDKAAERRANSNLGNSHIFLGE 255 (609)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----------~~~~~~~~~~~~~~~~~la~~~~~~g~ 255 (609)
++..+..+.+......+..+|..++..|++.+|..++-.+-. .....+.+..........-.-|...++
T Consensus 77 i~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n 156 (260)
T PF04190_consen 77 IKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGN 156 (260)
T ss_dssp HHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTB
T ss_pred HHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcC
Confidence 665533344455667888899999999999988888743211 111112111111122222334556677
Q ss_pred HHHHHHHHHHHHHH
Q psy10738 256 YQAASEHYKRTLVL 269 (609)
Q Consensus 256 ~~~A~~~~~~al~~ 269 (609)
...|...+..-.+.
T Consensus 157 ~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 157 LRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766555544
No 347
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.34 E-value=0.91 Score=29.55 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q psy10738 282 ACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 313 (609)
Q Consensus 282 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 313 (609)
++..||.+-...++|++|+.-|++++.+..++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 56667777777777777777777777766543
No 348
>KOG2114|consensus
Probab=88.77 E-value=13 Score=41.41 Aligned_cols=50 Identities=22% Similarity=0.210 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcC-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 82 YHKQDLTLARNME-DKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 82 ~~~~al~~~~~~~-d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
.|.-|+.+++..+ +......++...|..++..|++++|..+|-+++....
T Consensus 349 ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le 399 (933)
T KOG2114|consen 349 LYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE 399 (933)
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence 4555666777654 4455678888999999999999999999999886543
No 349
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=88.74 E-value=1.3 Score=31.32 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchh
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLR 57 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~ 57 (609)
++..|..+++.|+|++|..+.+.+++..|++..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 344578899999999999999999999999865
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.58 E-value=23 Score=37.54 Aligned_cols=158 Identities=18% Similarity=0.184 Sum_probs=82.8
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q psy10738 70 YFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNV 149 (609)
Q Consensus 70 ~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~ 149 (609)
....++++++....... .+.+.+ ...-...++..+..+|.++.|+.....--. .+. +
T Consensus 271 av~~~d~~~v~~~i~~~-~ll~~i-----~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~--------------rFe---L 327 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAAS-NLLPNI-----PKDQGQSIARFLEKKGYPELALQFVTDPDH--------------RFE---L 327 (443)
T ss_dssp HHHTT-HHH-----HHH-HTGGG-------HHHHHHHHHHHHHTT-HHHHHHHSS-HHH--------------HHH---H
T ss_pred HHHcCChhhhhhhhhhh-hhcccC-----ChhHHHHHHHHHHHCCCHHHHHhhcCChHH--------------HhH---H
Confidence 34567888877666311 111111 123355667778888888888776543211 122 3
Q ss_pred HHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 150 YHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKI 229 (609)
Q Consensus 150 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 229 (609)
....|+ ++.|.+. +++..+ ...|..||......|+++-|.++|+++-.
T Consensus 328 Al~lg~--------------------L~~A~~~-------a~~~~~----~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d- 375 (443)
T PF04053_consen 328 ALQLGN--------------------LDIALEI-------AKELDD----PEKWKQLGDEALRQGNIELAEECYQKAKD- 375 (443)
T ss_dssp HHHCT---------------------HHHHHHH-------CCCCST----HHHHHHHHHHHHHTTBHHHHHHHHHHCT--
T ss_pred HHhcCC--------------------HHHHHHH-------HHhcCc----HHHHHHHHHHHHHcCCHHHHHHHHHhhcC-
Confidence 356677 6666443 333333 23788999999999999999999988633
Q ss_pred HHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 230 AREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH 306 (609)
Q Consensus 230 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 306 (609)
+..|..+|...|+.+.- ++...++...++.. ..-.+++..|+.++.++.+.++
T Consensus 376 -------------~~~L~lLy~~~g~~~~L----~kl~~~a~~~~~~n-------~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 376 -------------FSGLLLLYSSTGDREKL----SKLAKIAEERGDIN-------IAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -------------HHHHHHHHHHCT-HHHH----HHHHHHHHHTT-HH-------HHHHHHHHHT-HHHHHHHHHHT
T ss_pred -------------ccccHHHHHHhCCHHHH----HHHHHHHHHccCHH-------HHHHHHHHcCCHHHHHHHHHHc
Confidence 34566677778886443 33333444333211 1123445566766666655543
No 351
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=88.15 E-value=27 Score=34.11 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=16.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 207 GNTYYLLGNFKQAIYYHQERLKI 229 (609)
Q Consensus 207 g~~~~~~g~~~~A~~~~~~al~~ 229 (609)
..-|...|+...|...+..-.+.
T Consensus 148 VL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 34466779999888877766655
No 352
>KOG2561|consensus
Probab=88.05 E-value=10 Score=39.00 Aligned_cols=126 Identities=14% Similarity=0.005 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc-----HHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHH
Q psy10738 100 AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDK-----LSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKV 174 (609)
Q Consensus 100 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~-----~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~ 174 (609)
+..++..|.+......|++|+.++-.|-+.+...+.. ...+..-..+-+||+.+.+..+ .+++..
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitc----------L~DAe~ 232 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITC----------LPDAEV 232 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhccccc----------CChHHH
Confidence 3445666777888888999988888777665543221 1334445566778888777111 112222
Q ss_pred hHHHHHHHHHHHHH----HHHHh--C---ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q psy10738 175 CLQEAIKYYEQNLA----LMKEI--N---DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD 235 (609)
Q Consensus 175 ~~~~A~~~~~~al~----~~~~~--~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 235 (609)
.+..|.+.|.++.- -...+ + ......+.+..-|.+.+.+|+-++|.++++.+.....+..-
T Consensus 233 RL~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki 302 (568)
T KOG2561|consen 233 RLVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKI 302 (568)
T ss_pred HHHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeec
Confidence 23344443333321 11111 1 12334556667788888888888888888888777666443
No 353
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=87.88 E-value=31 Score=34.97 Aligned_cols=122 Identities=10% Similarity=0.020 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH---HHHHHHHHHcC
Q psy10738 38 CRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS---GNLGNTLKVMG 114 (609)
Q Consensus 38 ~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~---~~lg~~~~~~g 114 (609)
.+.-+.+|++|++.+|++.. ++..+-.......+.++...-+++++.. .+.....| ...-......-
T Consensus 47 ~E~klsilerAL~~np~~~~----L~l~~l~~~~~~~~~~~l~~~we~~l~~------~~~~~~LW~~yL~~~q~~~~~f 116 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSER----LLLGYLEEGEKVWDSEKLAKKWEELLFK------NPGSPELWREYLDFRQSNFASF 116 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHH------CCCChHHHHHHHHHHHHHhccC
Confidence 56778999999999997755 2233333444556777777778877776 33333333 22222223344
Q ss_pred CHHHHHHHHHHHHHHHHHcCCc------------HHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHH
Q psy10738 115 KYDEAMVCCKRHLEISRQLNDK------------LSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182 (609)
Q Consensus 115 ~~~~A~~~~~~al~l~~~~~d~------------~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 182 (609)
.+......|.+++......... .....++..+.......|. .+.|+..
T Consensus 117 ~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~--------------------~E~Ava~ 176 (321)
T PF08424_consen 117 TVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGY--------------------TERAVAL 176 (321)
T ss_pred cHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCc--------------------hHHHHHH
Confidence 6888999999998876654322 2445666777777888888 8899988
Q ss_pred HHHHHHH
Q psy10738 183 YEQNLAL 189 (609)
Q Consensus 183 ~~~al~~ 189 (609)
++..+++
T Consensus 177 ~Qa~lE~ 183 (321)
T PF08424_consen 177 WQALLEF 183 (321)
T ss_pred HHHHHHH
Confidence 8888776
No 354
>KOG2114|consensus
Probab=87.73 E-value=11 Score=41.97 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 181 KYYEQNLALMKEIND-TAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIA 230 (609)
Q Consensus 181 ~~~~~al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 230 (609)
..|.-|+.+++..+. ......++...|..++..|++++|...|.+++...
T Consensus 348 ~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 348 NLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 456677888877754 45567788889999999999999999999987643
No 355
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=87.51 E-value=31 Score=35.88 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQL--GNAYFYLGDYQKAMQYHKQDLTL 89 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~l--g~~~~~~g~~~~A~~~~~~al~~ 89 (609)
...++..++..++|..|...+......-|.+.. ...+..+ |..++..-++.+|.++++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345588899999999999999999986333332 2344444 45556678899999999987765
No 356
>KOG1497|consensus
Probab=87.33 E-value=32 Score=34.05 Aligned_cols=108 Identities=9% Similarity=0.015 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Q psy10738 197 AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIA--REFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG 274 (609)
Q Consensus 197 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 274 (609)
...+.+...||.+|...++|..|-..+.-. ... +...+.......+..+|.+|...++..+|..+..++--+.....
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~ 178 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESS 178 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccc
Confidence 345678889999999999999988766432 111 11223344566888999999999999999999988765555545
Q ss_pred CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 275 DRAVEAQACYSLGNTYTLLRDYPTAIDYHLR 305 (609)
Q Consensus 275 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 305 (609)
+.......-...|++.-..++|-+|...|-+
T Consensus 179 Ne~Lqie~kvc~ARvlD~krkFlEAAqrYye 209 (399)
T KOG1497|consen 179 NEQLQIEYKVCYARVLDYKRKFLEAAQRYYE 209 (399)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444444556677667777666554443
No 357
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=87.13 E-value=29 Score=33.33 Aligned_cols=178 Identities=16% Similarity=0.088 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKV-MGKYDEAMVCCKRHLEISRQLNDKLSEGR 141 (609)
Q Consensus 63 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~~~~~d~~~~~~ 141 (609)
+..++.+....|+|++.+.+.++++... ......=...++.+|.. .|....+...+.....-....+......
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~-----~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~- 77 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMN-----PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVK- 77 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTS-----S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccC-----CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHH-
Confidence 4667888889999999999999988772 22222333344444422 2333334433333222222111111111
Q ss_pred HHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh-----CChHHHHHHHHHHHHHHHHc---
Q psy10738 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI-----NDTAAQGRACGNLGNTYYLL--- 213 (609)
Q Consensus 142 ~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~lg~~~~~~--- 213 (609)
+..-|. .+ .-++-.......+.+.... .+.......+-..|..|..+
T Consensus 78 ----~i~~yk--~k-------------------ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~ 132 (236)
T PF00244_consen 78 ----LIKDYK--KK-------------------IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEF 132 (236)
T ss_dssp ----HHHHHH--HH-------------------HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----HHHHHH--HH-------------------HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcccccccccc
Confidence 111111 11 0122233444444444332 22233333334445544322
Q ss_pred --C-----CHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHH
Q psy10738 214 --G-----NFKQAIYYHQERLKIAREF--GDKAAERRANSNLGNSH-IFLGEYQAASEHYKRTLVLAQ 271 (609)
Q Consensus 214 --g-----~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~ 271 (609)
| -.+.|...|++|+.++... +..+.......|.+..| ...|+.++|+...++|+..+.
T Consensus 133 ~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 133 DSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 1 1356777888888887772 22222233334444443 446778888777777766554
No 358
>KOG2908|consensus
Probab=86.78 E-value=36 Score=34.05 Aligned_cols=100 Identities=11% Similarity=0.141 Sum_probs=74.5
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHH-
Q psy10738 210 YYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV-EAQACYSLG- 287 (609)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~la- 287 (609)
....++.++|++++++..+.......+.........+|.++...|+..++.+.+...-........-.. ....++.++
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lss 164 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSS 164 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHH
Confidence 345569999999999999998888887778888899999999999999999999988887766543222 344455554
Q ss_pred HHHHHhCCHHHHHHHHHHHHHH
Q psy10738 288 NTYTLLRDYPTAIDYHLRHLII 309 (609)
Q Consensus 288 ~~~~~~g~~~~A~~~~~~al~~ 309 (609)
..|...|++..+....-+.+..
T Consensus 165 qYyk~~~d~a~yYr~~L~YL~~ 186 (380)
T KOG2908|consen 165 QYYKKIGDFASYYRHALLYLGC 186 (380)
T ss_pred HHHHHHHhHHHHHHHHHHHhcc
Confidence 4556678887665555444443
No 359
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=86.38 E-value=33 Score=33.12 Aligned_cols=187 Identities=12% Similarity=0.049 Sum_probs=101.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHh-CCcchhHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHH-HcCChhhHHHH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQA-GTDDLRTLSAIYSQLGNAYFY-LGDYQKAMQYHKQDLTLAR-NMEDKLGEAKS 102 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~-~~~d~~~~~~a 102 (609)
+..|...-..|+|++.+.+.+++++. ++.... ..=...+..+|-. .|....+...+.. ++.-. ..+....
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt--~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~~~~---- 77 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVDSEELT--VEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGNEDH---- 77 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCC--HHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCchHH----
Confidence 34577778889999999999999886 432222 1223445555543 3556666665554 22211 1111111
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-----CCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLEISRQL-----NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQ 177 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~-----~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 177 (609)
..+..-|. ..--++-...+...+.+.... .+....+..+-..|..|...-.. . ..++.....+
T Consensus 78 -~~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~-------~---~~~e~~~~~~ 145 (244)
T smart00101 78 -VASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEF-------K---TGAERKEAAE 145 (244)
T ss_pred -HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHH-------c---CcHHHHHHHH
Confidence 11111111 011234455667777665433 22233444444666666665441 0 0123334577
Q ss_pred HHHHHHHHHHHHHHH-h-CChHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHH
Q psy10738 178 EAIKYYEQNLALMKE-I-NDTAAQGRACGNLGNT-YYLLGNFKQAIYYHQERLKIAR 231 (609)
Q Consensus 178 ~A~~~~~~al~~~~~-~-~~~~~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~~ 231 (609)
+|...|++|++++.. + ..+|.......|.+.. |-.+++.++|....++++.-+-
T Consensus 146 ~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai 202 (244)
T smart00101 146 NTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAI 202 (244)
T ss_pred HHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 899999999999775 3 2233333344444444 4457999999988888776543
No 360
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=85.36 E-value=10 Score=31.77 Aligned_cols=70 Identities=13% Similarity=0.211 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCc---------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 243 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDR---------AVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 243 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 312 (609)
+..+|......+++-.++-+|++|+.+..+.... ......+.+||..+..+|+.+-.++|++-|-+....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777776665210 112446778999999999999999988876554433
No 361
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=85.27 E-value=13 Score=31.19 Aligned_cols=70 Identities=13% Similarity=0.064 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc---------hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q psy10738 283 CYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD---------RVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQ 352 (609)
Q Consensus 283 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~ 352 (609)
+..+|....+.+++-.++-+|++|+.+..++.. -......+.+||..+...|+.+-.++|++-|-+....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999988742 1122345779999999999999999998877665533
No 362
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.89 E-value=71 Score=35.67 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=10.9
Q ss_pred HHHHhcCChHHHHHHHHH
Q psy10738 30 ERLCKAGDCRAGVAFFQA 47 (609)
Q Consensus 30 ~~~~~~g~~~~A~~~~~~ 47 (609)
..+...|+|+.|+.++-+
T Consensus 266 ~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHh
Confidence 445566777777776665
No 363
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.81 E-value=1.2 Score=26.02 Aligned_cols=21 Identities=14% Similarity=-0.015 Sum_probs=10.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q psy10738 203 CGNLGNTYYLLGNFKQAIYYH 223 (609)
Q Consensus 203 ~~~lg~~~~~~g~~~~A~~~~ 223 (609)
..++|.++...|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 344455555555555554443
No 364
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=84.58 E-value=7.7 Score=30.94 Aligned_cols=46 Identities=28% Similarity=0.382 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy10738 41 GVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLA 90 (609)
Q Consensus 41 A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 90 (609)
.+.-++++++.+|+|.. +.+.+|..+...|+++.|++.+-.++...
T Consensus 7 ~~~al~~~~a~~P~D~~----ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 7 DIAALEAALAANPDDLD----ARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHHSTT-HH----HHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHcCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 46678889999999864 78899999999999999999888777663
No 365
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.05 E-value=1.4 Score=25.82 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHH
Q psy10738 322 ACWSLGNAHAARGNHEKALYFA 343 (609)
Q Consensus 322 ~~~~La~~~~~~g~~~~A~~~~ 343 (609)
+...+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555555555555555544
No 366
>KOG3364|consensus
Probab=83.97 E-value=4.1 Score=34.89 Aligned_cols=60 Identities=15% Similarity=0.259 Sum_probs=35.1
Q ss_pred HHHHHHhcC---ChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 28 EGERLCKAG---DCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTL 89 (609)
Q Consensus 28 ~g~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 89 (609)
.|+.+.... +..+.+.+++..++ ..++...-...+.|+..+++.++|++++.|....++.
T Consensus 38 lAwaLV~S~~~~dv~~GI~iLe~l~~--~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 38 LAWALVRSRDTEDVQEGIVILEDLLK--SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHcccchHHHHHhHHHHHHHhh--hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 345554433 34566777777665 1222223446666777777777777777777666655
No 367
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=83.87 E-value=32 Score=35.46 Aligned_cols=103 Identities=15% Similarity=0.055 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC---C--------h-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNME---D--------K-LGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEI 129 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---d--------~-~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 129 (609)
+-..=|..++++++|..|..-|..+|+++.+.. . . .....+.-.+..||..+++.+.|+.+..+.+.+
T Consensus 178 vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l 257 (569)
T PF15015_consen 178 VALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL 257 (569)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc
Confidence 334446677788888888888888888876431 1 0 112334567889999999999999999999888
Q ss_pred HHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH
Q psy10738 130 SRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 130 ~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 190 (609)
.+ ....-+...|.++..+.+ |.+|...+--+.-++
T Consensus 258 nP------~~frnHLrqAavfR~LeR--------------------y~eAarSamia~ymy 292 (569)
T PF15015_consen 258 NP------SYFRNHLRQAAVFRRLER--------------------YSEAARSAMIADYMY 292 (569)
T ss_pred Cc------chhhHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHH
Confidence 77 556667778888888888 888876665544433
No 368
>PRK10941 hypothetical protein; Provisional
Probab=83.73 E-value=7.6 Score=38.07 Aligned_cols=72 Identities=10% Similarity=0.064 Sum_probs=64.0
Q ss_pred chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 55 DLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQ 132 (609)
Q Consensus 55 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 132 (609)
+...+.+.+.++-.+|...++++.|+.+.+..+.+ .|....-+...|.+|..+|.+..|..-++..++.+++
T Consensus 176 ~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 176 NIEVIRKLLDTLKAALMEEKQMELALRASEALLQF------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 44567788889999999999999999999999999 7777778888999999999999999999998888774
No 369
>KOG2460|consensus
Probab=83.39 E-value=66 Score=34.17 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=34.8
Q ss_pred ChHHHHHHHHHHHHhCCc----c----hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q psy10738 37 DCRAGVAFFQAAIQAGTD----D----LRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM 93 (609)
Q Consensus 37 ~~~~A~~~~~~al~~~~~----~----~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 93 (609)
+..+|..+..+...+... | .+..+.+-+.-|.+.+...+|..|.+.+..+--.+...
T Consensus 121 rLrkA~~~A~eL~~~~q~~e~~Da~tkLEA~Ayaa~m~G~lnfE~r~Wk~a~ea~~~~klvye~L 185 (593)
T KOG2460|consen 121 RLRKAVKHADELVNLTQNEERFDARTKLEAQAYAAYMEGMLNFERRKWKDAAEAFNNAKLVYEKL 185 (593)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHhhhhhhHHhHHhHHHHHHHHHHHHHHH
Confidence 445555555555544221 1 22334444566777888889999999888877665544
No 370
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=83.07 E-value=26 Score=37.51 Aligned_cols=98 Identities=12% Similarity=0.057 Sum_probs=63.0
Q ss_pred HcCCcHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy10738 272 DLGDRAVEAQACYSLGNTYTL--LRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349 (609)
Q Consensus 272 ~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l 349 (609)
+.+.......++.+||.+... ...-..++..|.+|+..++..-+ .....-|..+|-.|.+.+++.+|+.++-+|-..
T Consensus 269 d~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~-n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~V 347 (618)
T PF05053_consen 269 DMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYN-NHHVYPYTYLGGYYYRHKRYREALRSWAEAADV 347 (618)
T ss_dssp HTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCT-T--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhc-CCccccceehhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334333345555566655432 23456678888899888877544 233446777888899999999999999999998
Q ss_pred HHHcCCCchHHHHHHHHHHHH
Q psy10738 350 SKQLGDPLGQVTAQMNVTDLR 370 (609)
Q Consensus 350 ~~~~~~~~~~~~a~~~la~l~ 370 (609)
.+..+......+++..+-++-
T Consensus 348 i~~YnY~reDeEiYKEfleIA 368 (618)
T PF05053_consen 348 IRKYNYSREDEEIYKEFLEIA 368 (618)
T ss_dssp HTTSB--GGGHHHHHHHHHHH
T ss_pred HHHcccCccHHHHHHHHHHHH
Confidence 888877777777776666554
No 371
>KOG3824|consensus
Probab=82.53 E-value=2.1 Score=41.72 Aligned_cols=62 Identities=21% Similarity=0.191 Sum_probs=54.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 64 SQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 64 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
...+.-....|+.++|...|+.|+.+ .+....++..+|.......+.-+|-.||-+|+.+.+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlal------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALAL------APTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhc------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 34444556789999999999999999 788889999999999999999999999999999877
No 372
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.53 E-value=3.5 Score=27.83 Aligned_cols=39 Identities=23% Similarity=0.200 Sum_probs=24.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q psy10738 324 WSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNV 366 (609)
Q Consensus 324 ~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~l 366 (609)
+.||.+|..+|+.+.|...+++.+. .++.+....|...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~----~~~~~q~~eA~~LL 41 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE----EGDEAQRQEARALL 41 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH----cCCHHHHHHHHHHH
Confidence 4677778888888888877777663 24444444444433
No 373
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.13 E-value=13 Score=32.56 Aligned_cols=78 Identities=14% Similarity=0.053 Sum_probs=59.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q psy10738 30 ERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNT 109 (609)
Q Consensus 30 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~ 109 (609)
......++.+++..++...--+.|+.+. +-..-|.++...|+|.+|+..++...+- .+....+.-.++.|
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e----~d~~dg~l~i~rg~w~eA~rvlr~l~~~------~~~~p~~kAL~A~C 87 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPNLKE----LDMFDGWLLIARGNYDEAARILRELLSS------AGAPPYGKALLALC 87 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCccc----cchhHHHHHHHcCCHHHHHHHHHhhhcc------CCCchHHHHHHHHH
Confidence 3344588999999999888888888654 5677889999999999999998876654 44445566677888
Q ss_pred HHHcCCHH
Q psy10738 110 LKVMGKYD 117 (609)
Q Consensus 110 ~~~~g~~~ 117 (609)
+..+|+.+
T Consensus 88 L~al~Dp~ 95 (153)
T TIGR02561 88 LNAKGDAE 95 (153)
T ss_pred HHhcCChH
Confidence 88888753
No 374
>KOG2561|consensus
Probab=81.90 E-value=21 Score=36.80 Aligned_cols=48 Identities=10% Similarity=-0.071 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q psy10738 319 EGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNV 366 (609)
Q Consensus 319 ~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~l 366 (609)
..+.+..-|.+.+.+|+.++|.++++.|.....++............+
T Consensus 266 ~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~lsllv~m 313 (568)
T KOG2561|consen 266 ILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETLSLLVGM 313 (568)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHHHHHHHc
Confidence 345566668888888888888888888888777765555444444333
No 375
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.72 E-value=38 Score=30.19 Aligned_cols=85 Identities=18% Similarity=0.007 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHH
Q psy10738 59 LSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLS 138 (609)
Q Consensus 59 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~ 138 (609)
....+..+..+-...++.+++...+.-.--+ .|.....-..-|+++...|++.+|+..++...+-.+ .
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvL------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~------~ 76 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVL------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAP------G 76 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC------C
Confidence 3445666777777888999998888877666 788888899999999999999999999998644332 4
Q ss_pred HHHHHHHHHHHHHHccc
Q psy10738 139 EGRALYNLGNVYHAKGK 155 (609)
Q Consensus 139 ~~~~~~~lg~~~~~~g~ 155 (609)
...+--.++.|++..|+
T Consensus 77 ~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 77 FPYAKALLALCLYALGD 93 (160)
T ss_pred ChHHHHHHHHHHHHcCC
Confidence 45566678888888888
No 376
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=81.43 E-value=72 Score=33.19 Aligned_cols=67 Identities=13% Similarity=0.005 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN--LGNTLKVMGKYDEAMVCCKRHLEIS 130 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~--lg~~~~~~g~~~~A~~~~~~al~l~ 130 (609)
+......+...+..++|..|...+...... +..... ...+.. .|..++...++.+|.++++..+...
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRR---LPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 344566677888999999999999987764 222222 334444 4566677889999999999877653
No 377
>KOG3364|consensus
Probab=80.74 E-value=17 Score=31.31 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q psy10738 240 RRANSNLGNSHIFLGEY---QAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 311 (609)
Q Consensus 240 ~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 311 (609)
....+++++++....+. .+.+..++..++ ..++...-...+.|+..+.+.++|++++.|.+..++.-+
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 34677888888876654 455556655554 123333456778888889999999999999888776543
No 378
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=80.64 E-value=78 Score=33.11 Aligned_cols=217 Identities=11% Similarity=-0.010 Sum_probs=123.6
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHh
Q psy10738 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVC 175 (609)
Q Consensus 96 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 175 (609)
-+.....|+.-...+...++-+.|+....+++...+. ....++.+|....+ .+++..+
T Consensus 298 ~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---------L~~~lse~yel~nd-------------~e~v~~~ 355 (660)
T COG5107 298 FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---------LTMFLSEYYELVND-------------EEAVYGC 355 (660)
T ss_pred hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---------hheeHHHHHhhccc-------------HHHHhhh
Confidence 4455667777777777788888888888887776652 33455566655555 3344444
Q ss_pred HHHHHHHHHHHHHHHHHh------CCh-----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHH
Q psy10738 176 LQEAIKYYEQNLALMKEI------NDT-----------AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAA 238 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~------~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (609)
|++....+.+-+.....- ++. .....++..+-+.-.+..-.+.|...|-++.+.-- .+.
T Consensus 356 fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~-~~h--- 431 (660)
T COG5107 356 FDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI-VGH--- 431 (660)
T ss_pred HHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC-CCc---
Confidence 555554444333222111 000 00111222222223333344555555555443210 111
Q ss_pred HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchh
Q psy10738 239 ERRANSNLGN-SHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRV 317 (609)
Q Consensus 239 ~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 317 (609)
.+|..-|. -|...|++..|-..|+-.+...++. .......-..+...++-+.|...|++++.-....
T Consensus 432 --~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~------~~y~~kyl~fLi~inde~naraLFetsv~r~~~~---- 499 (660)
T COG5107 432 --HVYIYCAFIEYYATGDRATAYNIFELGLLKFPDS------TLYKEKYLLFLIRINDEENARALFETSVERLEKT---- 499 (660)
T ss_pred --ceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHh----
Confidence 12222222 3556799999999999888776543 2222233345667899999999999988766553
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 318 GEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 318 ~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
....+|-.+-..-..-|+...++..-++..++.
T Consensus 500 q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 500 QLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 234566677777777888888887766666655
No 379
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=79.95 E-value=1.3e+02 Score=35.24 Aligned_cols=104 Identities=15% Similarity=0.084 Sum_probs=73.8
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q psy10738 67 GNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNL 146 (609)
Q Consensus 67 g~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~l 146 (609)
..++.....|+.|+..|++...- ......-.++.+.+|.+...+-.-..--..+.+|+..+..+.+......-|...
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRES---FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGK 558 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhc---CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhH
Confidence 34555556667776666664433 223344567888888888765433333367778888888787777777788899
Q ss_pred HHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh
Q psy10738 147 GNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI 193 (609)
Q Consensus 147 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 193 (609)
|.+|...|+ |++-++.|.-|++.+...
T Consensus 559 ~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~ 585 (932)
T PRK13184 559 ALVYQRLGE--------------------YNEEIKSLLLALKRYSQH 585 (932)
T ss_pred HHHHHHhhh--------------------HHHHHHHHHHHHHhcCCC
Confidence 999999999 999999999988766544
No 380
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=79.62 E-value=9.7 Score=39.50 Aligned_cols=72 Identities=18% Similarity=0.166 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC-----cchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 20 NMCLELALEGERLCKAGDCRAGVAFFQAAIQAGT-----DDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARN 92 (609)
Q Consensus 20 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 92 (609)
..++.+.-....++..|||..|++.++.. +++. .-+......++.+|.+|+.+++|.+|+..|...+-...+
T Consensus 120 LGYFSligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r 196 (404)
T PF10255_consen 120 LGYFSLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR 196 (404)
T ss_pred hhHHHHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777788999999999999988764 2221 223344568899999999999999999999998877544
No 381
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=79.04 E-value=16 Score=37.99 Aligned_cols=72 Identities=22% Similarity=0.192 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHH---hCChHHHHHHHHHHHHHHHHcCCHHH
Q psy10738 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKE---INDTAAQGRACGNLGNTYYLLGNFKQ 218 (609)
Q Consensus 142 ~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~ 218 (609)
++..|..++..+|+ |..|++.++.. ++-+. ...+.....+++.+|.+|..+++|.+
T Consensus 124 SligLlRvh~LLGD--------------------Y~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~D 182 (404)
T PF10255_consen 124 SLIGLLRVHCLLGD--------------------YYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYAD 182 (404)
T ss_pred HHHHHHHHHHhccC--------------------HHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHH
Confidence 45677889999999 99998876542 22111 12345567789999999999999999
Q ss_pred HHHHHHHHHHHHHHhC
Q psy10738 219 AIYYHQERLKIAREFG 234 (609)
Q Consensus 219 A~~~~~~al~~~~~~~ 234 (609)
|+..|...+-...+..
T Consensus 183 Air~f~~iL~yi~r~k 198 (404)
T PF10255_consen 183 AIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999887665544
No 382
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=78.38 E-value=27 Score=32.00 Aligned_cols=62 Identities=18% Similarity=0.127 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy10738 243 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 304 (609)
Q Consensus 243 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 304 (609)
+...+......|++++|...++++.+...++..........+.-|.+-..+..|-+|..++.
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~ 93 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYS 93 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHH
Confidence 34445555666777777777777766665543222222223333444444455556555443
No 383
>KOG1310|consensus
Probab=78.29 E-value=8.2 Score=40.69 Aligned_cols=93 Identities=19% Similarity=0.163 Sum_probs=71.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYL---GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
|.-.+..+....|+..|.++++..|... .+|.+.+.+++.. |+.-.|+.-+..|+.+ .+....+++.
T Consensus 381 gnd~ly~~~~~~~i~~~s~a~q~~~~~~----~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl------n~s~~kah~~ 450 (758)
T KOG1310|consen 381 GNDGLYESIVSGAISHYSRAIQYVPDAI----YLLENRAAALMKRKWRGDSYLALRDCHVALRL------NPSIQKAHFR 450 (758)
T ss_pred ccchhhhHHHHHHHHHHHHHhhhccchh----HHHHhHHHHHHhhhccccHHHHHHhHHhhccC------ChHHHHHHHH
Confidence 3334444567889999999999888753 3566666666654 5677788888888888 8888999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
|+.++..++++.+|+.+...+....+
T Consensus 451 la~aL~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 451 LARALNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence 99999999999999998876554443
No 384
>PRK10941 hypothetical protein; Provisional
Probab=77.22 E-value=15 Score=36.11 Aligned_cols=68 Identities=12% Similarity=-0.014 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 239 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 239 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 312 (609)
..+...++-.+|...++++.|+.+.+..+.+.++. ..-+...|.+|.++|.+..|..-++..++..++
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~d------p~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPED------PYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 34455566666666666666666666666665542 334445566666666666666666666655543
No 385
>KOG4521|consensus
Probab=77.10 E-value=1.6e+02 Score=34.72 Aligned_cols=31 Identities=19% Similarity=0.064 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 100 AKSSGNLGNTLKVMGKYDEAMVCCKRHLEIS 130 (609)
Q Consensus 100 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 130 (609)
....+.+|.+|...|+..+|+.+|.+|..-.
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ 950 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGF 950 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhcc
Confidence 3456778888888999999999999888754
No 386
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=76.73 E-value=82 Score=34.09 Aligned_cols=131 Identities=18% Similarity=0.107 Sum_probs=83.8
Q ss_pred hcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q psy10738 34 KAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVM 113 (609)
Q Consensus 34 ~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~ 113 (609)
..|.-.-|+..+...+..++.++...... . +...+...+....+......++.. .+..+.+..++|......
T Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~~~llla~-~-lsi~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~L~~ale~~ 114 (620)
T COG3914 43 AEGLQALAIYALLLGIAINDVNPELLLAA-F-LSILLAPLADSTLAFLAKRIPLSV------NPENCPAVQNLAAALELD 114 (620)
T ss_pred ccCchhHHHHHHHccCccCCCCHHHHHHH-H-HHhhccccccchhHHHHHhhhHhc------CcccchHHHHHHHHHHHh
Confidence 33334446666666667777776643322 2 677777888887888777777777 777888999999888887
Q ss_pred CCHHHHHHHHHH-HHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHH
Q psy10738 114 GKYDEAMVCCKR-HLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKE 192 (609)
Q Consensus 114 g~~~~A~~~~~~-al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 192 (609)
|....+...+.. +....+...........++.++.....+|+ ..++....+++..+..+
T Consensus 115 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------------------~~~~~~~l~~~~d~~p~ 174 (620)
T COG3914 115 GLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGR--------------------TAEAELALERAVDLLPK 174 (620)
T ss_pred hhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhcc--------------------HHHHHHHHHHHHHhhhh
Confidence 776666555444 554444222111222223336777777777 77777777777776443
No 387
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=76.24 E-value=36 Score=36.50 Aligned_cols=89 Identities=16% Similarity=0.137 Sum_probs=50.8
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHH
Q psy10738 184 EQNLALMKEINDTAAQGRACGNLGNTYYLL--GNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261 (609)
Q Consensus 184 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 261 (609)
++.+-+.-..+.-.....++.+||.+--.. ..-..++..|.+|+..++..-+. ....-|..+|..|++.++|.+|+.
T Consensus 261 q~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n-~HvYPYty~gg~~yR~~~~~eA~~ 339 (618)
T PF05053_consen 261 QDLLWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNN-HHVYPYTYLGGYYYRHKRYREALR 339 (618)
T ss_dssp HHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT---SHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcC-CccccceehhhHHHHHHHHHHHHH
Confidence 344444444455455556666666665432 22345677777777777764432 222356677777888888888877
Q ss_pred HHHHHHHHHHHc
Q psy10738 262 HYKRTLVLAQDL 273 (609)
Q Consensus 262 ~~~~al~~~~~~ 273 (609)
++-+|-......
T Consensus 340 ~Wa~aa~Vi~~Y 351 (618)
T PF05053_consen 340 SWAEAADVIRKY 351 (618)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHHc
Confidence 777766555544
No 388
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.88 E-value=15 Score=33.99 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEA 119 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A 119 (609)
..+.+|..|. ..+.++|+.++.+++++.... ......++..|+.+|...|+++.|
T Consensus 143 lq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~--~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 143 LQYALATYYT-KRDPEKTIQLLLRALELSNPD--DNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHHHhcchhhh
Confidence 3344444333 234445555555554443221 122334444455555555554444
No 389
>PRK14707 hypothetical protein; Provisional
Probab=75.79 E-value=2.3e+02 Score=35.95 Aligned_cols=269 Identities=15% Similarity=0.125 Sum_probs=163.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHH
Q psy10738 65 QLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS--GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRA 142 (609)
Q Consensus 65 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~--~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~ 142 (609)
.+++++..+.++.+...+-.-+..++..+...+.....+ -.+++++..++++..+..|-.-+..+...+........+
T Consensus 794 ~vAn~LNALSKWPe~~~Cr~AA~~LA~rLa~dp~Lr~af~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e~~LR~a 873 (2710)
T PRK14707 794 EMTNALNALSKWPDTPACAAAASALAARVADDPRLREAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAERLADEPELRHT 873 (2710)
T ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHhcChhHHHhcCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcChhhhhc
Confidence 345555556666666666666677776665555443333 457888888899988888888777777766544443333
Q ss_pred H--HHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHH--HHHHHHHHHHcCCHHH
Q psy10738 143 L--YNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRA--CGNLGNTYYLLGNFKQ 218 (609)
Q Consensus 143 ~--~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~lg~~~~~~g~~~~ 218 (609)
+ ..+++++..+++ +.+...+-..+..+...+.+.+..... -..+++++-.+.+|.+
T Consensus 874 L~~QevantLNALSK--------------------WPd~~~C~~AA~aLA~rL~~d~~Lrqal~aQ~VAN~LNALSKWPd 933 (2710)
T PRK14707 874 LTAHGVVIVLNALSK--------------------WPNVPVCAAAASALAERLADEPELRKALSAHRVATALNALSKWPD 933 (2710)
T ss_pred cchHHHHHHHhhhcc--------------------CCCcHHHHHHHHHHHHHHhcCHHHHhhccHHHHHHHHhhhccCCC
Confidence 3 356777777777 555555556666666666444443333 3456777777888877
Q ss_pred HHHHHHHHHHHHHHhCChHHH--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHH--HHHHHHHHHHHHHHhC
Q psy10738 219 AIYYHQERLKIAREFGDKAAE--RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV--EAQACYSLGNTYTLLR 294 (609)
Q Consensus 219 A~~~~~~al~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~la~~~~~~g 294 (609)
+-.+-.-+..++......... +..-..+++++-.+++|.+...+-.-+..+...+.+... ....-..+++++..+.
T Consensus 934 ~~~Cr~Aa~aLA~rLa~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~~~~LR~al~aQ~vAN~LNALS 1013 (2710)
T PRK14707 934 IPVCATAASALAERLSDDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVDEPALRNALDPIGMANALNALS 1013 (2710)
T ss_pred chHHHHHHHHHHHHhccChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhccHHHHhhcchHHHHHHHhhhh
Confidence 766666666666665443333 223345777888888888777766666666665532221 1223346778888888
Q ss_pred CHHHHHHHHHHHHHHHHHhcchhhH--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHc
Q psy10738 295 DYPTAIDYHLRHLIIAQQLMDRVGE--GRACWSLGNAHAARGNHEKALYFATKHLEISKQL 353 (609)
Q Consensus 295 ~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~ 353 (609)
++.++-.+-.-+..++..+...... ..--..+++++-.+.++.+.-.+-.-+..+...+
T Consensus 1014 KWPd~~~Cr~AA~~LA~rLa~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL 1074 (2710)
T PRK14707 1014 KWLQMPVCAATVEALAARLSNDPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERL 1074 (2710)
T ss_pred cCCCchHHHHHHHHHHHHhccCHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHh
Confidence 8877666666666666665433222 2223456667777776665555444444444433
No 390
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=73.77 E-value=9.6 Score=36.48 Aligned_cols=75 Identities=12% Similarity=0.134 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q psy10738 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSH 250 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 250 (609)
...|.+++.+|+-.++..++....+.+....+..|+...+|+.|..||.+|+.++....-+.+..+.-..|-...
T Consensus 55 ~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~~We~rLet~L~~~~ 129 (368)
T COG5091 55 MENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLPLWEDRLETKLNKKN 129 (368)
T ss_pred hhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhHhh
Confidence 677888888888888888888777777778888888888888888888888888666554444444333333333
No 391
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=73.75 E-value=5 Score=37.67 Aligned_cols=55 Identities=22% Similarity=0.326 Sum_probs=44.0
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 31 RLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTL 89 (609)
Q Consensus 31 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 89 (609)
.....|+.+.|.+.|.+++.+.|+. +..|+.+|....+.|+++.|...|++.+++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w----~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEW----AAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchh----hhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 3456788888888888888888875 447788888888888888888888888877
No 392
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.08 E-value=15 Score=34.03 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=42.8
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHH
Q psy10738 31 RLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQ 81 (609)
Q Consensus 31 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 81 (609)
.++...|.++|+.++.+++++.+.+...-..++..|+.+|..+|+++.|--
T Consensus 149 tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 149 TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 466688999999999999999775544447799999999999999998854
No 393
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.27 E-value=7.2 Score=26.35 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Q psy10738 244 SNLGNSHIFLGEYQAASEHYKRTLV 268 (609)
Q Consensus 244 ~~la~~~~~~g~~~~A~~~~~~al~ 268 (609)
+.+|.+|+..|+++.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4677888888888888888777763
No 394
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=71.68 E-value=1.2e+02 Score=30.71 Aligned_cols=101 Identities=15% Similarity=-0.038 Sum_probs=62.8
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q psy10738 210 YYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNT 289 (609)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 289 (609)
+...|+...|. ++..++.-+.. ..|+..-.++...++|++-..+... -.. +..|.-...+
T Consensus 187 li~~~~~k~A~-------kl~k~Fkv~dk--rfw~lki~aLa~~~~w~eL~~fa~s-------kKs----PIGyepFv~~ 246 (319)
T PF04840_consen 187 LIEMGQEKQAE-------KLKKEFKVPDK--RFWWLKIKALAENKDWDELEKFAKS-------KKS----PIGYEPFVEA 246 (319)
T ss_pred HHHCCCHHHHH-------HHHHHcCCcHH--HHHHHHHHHHHhcCCHHHHHHHHhC-------CCC----CCChHHHHHH
Confidence 34566654443 34444433332 3666777888899999876554321 112 2344555677
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy10738 290 YTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATK 345 (609)
Q Consensus 290 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~ 345 (609)
+...|+..+|..|..+.- .......|...|++.+|.+..-+
T Consensus 247 ~~~~~~~~eA~~yI~k~~---------------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKIP---------------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHCCCHHHHHHHHHhCC---------------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 788899999998887711 13355678899999988776443
No 395
>KOG3024|consensus
Probab=71.63 E-value=1.1e+02 Score=30.10 Aligned_cols=133 Identities=10% Similarity=-0.051 Sum_probs=0.0
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q psy10738 211 YLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY 290 (609)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 290 (609)
...|++=+|-..++......-.......-....+.-+.+.++.++...|..+.-..++..............-.....+-
T Consensus 17 ~~~~d~Yeahqm~RTl~fR~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~~ad~~~~~anl~~ll~ 96 (312)
T KOG3024|consen 17 IELGDYYEAHQMYRTLVFRYTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAEVADSLLKVANLAELLG 96 (312)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhHhHHHHHHHHHHHh
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHcCChHHHHHHH
Q psy10738 291 TLLRDYPTAIDYHLRHLIIAQQL-MDRVGEGRACWSLGNAHAARGNHEKALYFA 343 (609)
Q Consensus 291 ~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~La~~~~~~g~~~~A~~~~ 343 (609)
..-..-.+=..+.+.+++...+. ..+.+....+..+|..+..-++..+|..+|
T Consensus 97 e~~~~eper~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HF 150 (312)
T KOG3024|consen 97 EADPSEPERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHF 150 (312)
T ss_pred hcCCCccHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHh
No 396
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=71.28 E-value=26 Score=30.74 Aligned_cols=82 Identities=18% Similarity=0.007 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~ 141 (609)
.+..+...-...++++++...+...--+ .|.....-..-|.++...|++.+|+..+....+-.. ....
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvL------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~------~~p~ 79 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVL------RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG------APPY 79 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC------CchH
Confidence 3444444555588888888877766666 677788888899999999999999999887654332 3345
Q ss_pred HHHHHHHHHHHccc
Q psy10738 142 ALYNLGNVYHAKGK 155 (609)
Q Consensus 142 ~~~~lg~~~~~~g~ 155 (609)
+.-.++.|+..+|+
T Consensus 80 ~kAL~A~CL~al~D 93 (153)
T TIGR02561 80 GKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHHHHHhcCC
Confidence 55677888888888
No 397
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.37 E-value=84 Score=28.48 Aligned_cols=136 Identities=15% Similarity=0.117 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
..++.+..+...+..++|+.-|...-+.+-+..+.+ +....|.+....|+...|+.+|..+-.-... .....-.+.
T Consensus 60 d~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvL--A~mr~at~~a~kgdta~AV~aFdeia~dt~~--P~~~rd~AR 135 (221)
T COG4649 60 DAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVL--ARMRAATLLAQKGDTAAAVAAFDEIAADTSI--PQIGRDLAR 135 (221)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHH--HHHHHHHHHhhcccHHHHHHHHHHHhccCCC--cchhhHHHH
Confidence 344557777888999999999988877766555433 5678899999999999999999876543111 011112345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
..-+..+...|-|+.-..-.+. +. ....+....+.-.||..-+..|+ +.+|...|
T Consensus 136 lraa~lLvD~gsy~dV~srvep---La--~d~n~mR~sArEALglAa~kagd--------------------~a~A~~~F 190 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEP---LA--GDGNPMRHSAREALGLAAYKAGD--------------------FAKAKSWF 190 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhh---cc--CCCChhHHHHHHHHhHHHHhccc--------------------hHHHHHHH
Confidence 5667777888888875543331 11 12233556677889999999999 99999999
Q ss_pred HHHHH
Q psy10738 184 EQNLA 188 (609)
Q Consensus 184 ~~al~ 188 (609)
.....
T Consensus 191 ~qia~ 195 (221)
T COG4649 191 VQIAN 195 (221)
T ss_pred HHHHc
Confidence 87654
No 398
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=69.74 E-value=13 Score=36.61 Aligned_cols=62 Identities=21% Similarity=0.300 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q psy10738 41 GVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKV 112 (609)
Q Consensus 41 A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~ 112 (609)
|+.+|.+|+.+.|+. +..|+++|.++...|+.-.|+-+|-+++.. ......+..++...+..
T Consensus 1 A~~~Y~~A~~l~P~~----G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~------~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN----GNPYNQLAVLASYQGDDLDAVYYYIRSLAV------RIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTB----SHHHHHHHHHHHHTT-HHHHHHHHHHHHSS------SB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC----CCcccchhhhhccccchHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHH
Confidence 677888888888876 447888888888888888888888777754 22235556666665555
No 399
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=69.44 E-value=5.3 Score=37.53 Aligned_cols=58 Identities=24% Similarity=0.227 Sum_probs=52.2
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 69 AYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQ 132 (609)
Q Consensus 69 ~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 132 (609)
.....++.+.|.+.|.+++++ .+..+..|+.+|....+.|+++.|...|++.+++.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~l------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 345678999999999999999 7778899999999999999999999999999998763
No 400
>KOG1258|consensus
Probab=69.39 E-value=1.7e+02 Score=31.73 Aligned_cols=125 Identities=12% Similarity=0.029 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhh
Q psy10738 239 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVG 318 (609)
Q Consensus 239 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 318 (609)
....|......-...|+++...-.|++++--.... ...|...+......|+.+-|...+..+.++....
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y------~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~----- 364 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY------DEFWIKYARWMESSGDVSLANNVLARACKIHVKK----- 364 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh------HHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCC-----
Confidence 34456666677778899999999999887655443 5567777777777899999988888888776442
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCC
Q psy10738 319 EGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDL 380 (609)
Q Consensus 319 ~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al 380 (609)
...+...-+.+-...|++..|...++...+-. ++...+-..-+......|+.+.+.
T Consensus 365 ~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~------pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 365 TPIIHLLEARFEESNGNFDDAKVILQRIESEY------PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred CcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC------CchhhhHHHHHhHHHHhcchhhhh
Confidence 23355566777788899999999988876543 455555555555666667665543
No 401
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=69.27 E-value=32 Score=33.71 Aligned_cols=65 Identities=23% Similarity=0.319 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 61 AIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 61 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
..+...+..|...|.+.+|+.++++++.+ ++..-..+..+-.++..+|+--.|...|++.-+...
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltl------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vle 344 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTL------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLE 344 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhc------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence 34455677888899999999999999998 777888888888999999998899998887665443
No 402
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=68.90 E-value=12 Score=36.81 Aligned_cols=62 Identities=16% Similarity=0.206 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q psy10738 299 AIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKA 372 (609)
Q Consensus 299 A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~ 372 (609)
|..||.+|..+.+..|. .|..||.++...|+.-.|+.+|-+++-.. .....|..+|..+...
T Consensus 1 A~~~Y~~A~~l~P~~G~------p~nQLAvl~~~~~~~l~avy~y~Rsl~~~------~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGN------PYNQLAVLASYQGDDLDAVYYYIRSLAVR------IPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSH------HHHHHHHHHHHTT-HHHHHHHHHHHHSSS------B--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCC------cccchhhhhccccchHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHH
Confidence 56777777777777554 67777777777777777777777776422 2336677777777766
No 403
>PRK14707 hypothetical protein; Provisional
Probab=68.34 E-value=3.4e+02 Score=34.66 Aligned_cols=273 Identities=16% Similarity=0.137 Sum_probs=169.7
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 64 SQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS--GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141 (609)
Q Consensus 64 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~--~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~ 141 (609)
..++++...+.++..+..+-..+..++..+...+....++ ..+++++..++++.+...|-.-+..+...+.+......
T Consensus 835 Q~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~Lrq 914 (2710)
T PRK14707 835 QHVATVLNAMSKWPDNAVCAAAAGAMAERLADEPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPELRK 914 (2710)
T ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHHhcChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHHHHh
Confidence 3567777788888888888777777777665555443333 45678888889998888888888888877755444433
Q ss_pred HH--HHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHH--HHHHHHHHHHcCCHH
Q psy10738 142 AL--YNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRA--CGNLGNTYYLLGNFK 217 (609)
Q Consensus 142 ~~--~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~lg~~~~~~g~~~ 217 (609)
++ -.+++++..+.+ +.++-.+-.-+..++..+...+....+ -..+++++..+++|.
T Consensus 915 al~aQ~VAN~LNALSK--------------------WPd~~~Cr~Aa~aLA~rLa~d~~Lr~Aln~Q~lsNtLNALSKWP 974 (2710)
T PRK14707 915 ALSAHRVATALNALSK--------------------WPDIPVCATAASALAERLSDDPDLREALDASNLPQVLNALSKWP 974 (2710)
T ss_pred hccHHHHHHHHhhhcc--------------------CCCchHHHHHHHHHHHHhccChhhhhhccHHHHHHHHhhhccCC
Confidence 33 467778888777 444444444445555555444433333 345778888888888
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHH--HHHHHHHHHHHHHh
Q psy10738 218 QAIYYHQERLKIAREFGDKAAERR--ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVE--AQACYSLGNTYTLL 293 (609)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~la~~~~~~ 293 (609)
+.-.+-.-+..++....+...... .-..+++++..+.+|.++-.+-.-+..+...+...... +.--..+++++-.+
T Consensus 975 d~~~c~~AA~aLA~rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa~ep~L~~amdaQ~lan~LNAL 1054 (2710)
T PRK14707 975 DVPAGGEVVDALAERLVDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLSNDPGLCKALSSQGLTTVLNAL 1054 (2710)
T ss_pred CchHHHHHHHHHHHHHhccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhccCHhhhhhcchHHHHHHHHhh
Confidence 877777777777766543332222 23456777777788876666666666666655333222 22334677777778
Q ss_pred CCHHHHHHHHHHHHHHHHHhcchhhH--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCC
Q psy10738 294 RDYPTAIDYHLRHLIIAQQLMDRVGE--GRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDP 356 (609)
Q Consensus 294 g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 356 (609)
.++.+.-.+-.-+..++..+.+.... +..-..+++++-.+-++.+.-.+-..++.+...++..
T Consensus 1055 SKWPde~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~ 1119 (2710)
T PRK14707 1055 CKWPEMPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDD 1119 (2710)
T ss_pred ccCCCchhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccc
Confidence 88776666555555555554332221 1223345666666666666666666666666666543
No 404
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=67.92 E-value=38 Score=25.92 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q psy10738 21 MCLELALEGERLCKAGDCRAGVAFFQAAIQA 51 (609)
Q Consensus 21 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~ 51 (609)
....++.+|..+-..|++.+|+.+|+++++.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3456777888899999999999999998874
No 405
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=67.44 E-value=28 Score=27.72 Aligned_cols=66 Identities=18% Similarity=0.236 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccc
Q psy10738 80 MQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK 155 (609)
Q Consensus 80 ~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~ 155 (609)
+..+++.++. .|....+.+.+|..+...|++++|++.+-..+...+..++.. +.-.+-.++...|.
T Consensus 8 ~~al~~~~a~------~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~----ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAA------NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDA----ARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHH------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCH----HHHHHHHHHHHH-T
T ss_pred HHHHHHHHHc------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccH----HHHHHHHHHHHcCC
Confidence 3445555555 777889999999999999999999999988887766544332 22333344445554
No 406
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=67.42 E-value=16 Score=35.10 Aligned_cols=85 Identities=18% Similarity=0.029 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q psy10738 294 RDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKAL 373 (609)
Q Consensus 294 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~ 373 (609)
-..+.|.+++.+|+-.+...+++...+.+....+..|+...+|+-|..||.+|+.++..-..+.++.+.-..|-.....+
T Consensus 53 ~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~~We~rLet~L~~~~kkQ 132 (368)
T COG5091 53 ATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLPLWEDRLETKLNKKNKKQ 132 (368)
T ss_pred cChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhHhhHhh
Confidence 34567888888888888888887777777777788888888999999999999888877666677777766777777666
Q ss_pred CCCCC
Q psy10738 374 GMSTN 378 (609)
Q Consensus 374 g~~~~ 378 (609)
.+..+
T Consensus 133 ~~~Tn 137 (368)
T COG5091 133 KDSTN 137 (368)
T ss_pred ccccC
Confidence 65433
No 407
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=67.12 E-value=34 Score=35.84 Aligned_cols=93 Identities=17% Similarity=0.149 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
+..+.-...+..|+...|-.-+..++...|.+|. .....+.+...+|+|+.|...+.-+-.+... ...+.
T Consensus 291 ~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~----~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s------~~~~~ 360 (831)
T PRK15180 291 EITLSITKQLADGDIIAASQQLFAALRNQQQDPV----LIQLRSVIFSHLGYYEQAYQDISDVEKIIGT------TDSTL 360 (831)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCch----hhHHHHHHHHHhhhHHHHHHHhhchhhhhcC------CchHH
Confidence 3334455667889999999999999999998876 3355678888999999998877655444211 12233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRH 126 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~a 126 (609)
..+-.....+|++++|.....-.
T Consensus 361 ~~~~r~~~~l~r~~~a~s~a~~~ 383 (831)
T PRK15180 361 RCRLRSLHGLARWREALSTAEMM 383 (831)
T ss_pred HHHHHhhhchhhHHHHHHHHHHH
Confidence 44445566778888887665543
No 408
>KOG1953|consensus
Probab=67.06 E-value=2.2e+02 Score=33.02 Aligned_cols=137 Identities=8% Similarity=-0.061 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC----cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---
Q psy10738 237 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD----RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII--- 309 (609)
Q Consensus 237 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 309 (609)
......+.+.++++...|.+..+...........-+..+ .......+..+|.+|...|-..++.-+.+-..-.
T Consensus 436 ~~~~~iv~~~~r~L~~i~~s~k~~~F~r~~~~kyl~l~n~~m~~r~q~qi~s~~a~myre~g~~rkqaf~~rlsv~~~L~ 515 (1235)
T KOG1953|consen 436 RERCRIVGAMARMLGSIGFSRKRVKFLRELVSKYLSLTNVLMETRRQNQIKSTMAGMYREVGASRKQAFFKRLSVCNILP 515 (1235)
T ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHhhhchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 334556777777777778777776666555433222221 2223445666666666666555544433322111
Q ss_pred ----------------------HHHhc--------------chhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHc
Q psy10738 310 ----------------------AQQLM--------------DRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQL 353 (609)
Q Consensus 310 ----------------------~~~~~--------------~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~ 353 (609)
....+ .......++..+-.+..+.|+++.|+.+....+..+-.+
T Consensus 516 ~T~~~~~~~~dyKt~~~~l~~lLe~~g~e~~~~~d~~sq~~w~~LQ~kvL~eii~~a~ragd~~aa~~~~s~Ll~~yypl 595 (1235)
T KOG1953|consen 516 LTSEICQEYGDYKTDGSLLNPLLEKWGSEAKINVDDPSQSTWSNLQFKVLNEIISLADRAGDYRAALLLISLLLLTYYPL 595 (1235)
T ss_pred cccchhccCccccccHHHHHHHHHhccccccCCcCccccccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhc
Confidence 11111 011233445555666678888888888877777666555
Q ss_pred CCCchHHHHHHHHHHHHHHc
Q psy10738 354 GDPLGQVTAQMNVTDLRKAL 373 (609)
Q Consensus 354 ~~~~~~~~a~~~la~l~~~~ 373 (609)
-+..........+...+...
T Consensus 596 l~sS~q~~Lfk~l~n~~~~~ 615 (1235)
T KOG1953|consen 596 LSSSQQISLFKALRNTYLFA 615 (1235)
T ss_pred cChhhhHHHHHHHHhHHhhc
Confidence 55555544444555555443
No 409
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.80 E-value=1.6e+02 Score=29.80 Aligned_cols=50 Identities=14% Similarity=0.117 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhCCcchhHHHHHHH--HHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q psy10738 41 GVAFFQAAIQAGTDDLRTLSAIYS--QLGNAYFYLGDYQKAMQYHKQDLTLARNM 93 (609)
Q Consensus 41 A~~~~~~al~~~~~~~~~~a~~~~--~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 93 (609)
+...|+++.+.-|+... .++. .-|.+++..++|.++...+..+-...+..
T Consensus 40 ~~~~y~Q~~q~~kk~~~---~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~Kqq 91 (449)
T COG3014 40 PKKAYEQSKQFTKKKKN---ALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQ 91 (449)
T ss_pred chhHHHHHHHhhhhhhH---HHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhh
Confidence 44566777776665433 2333 45889999999999888887776655543
No 410
>KOG0530|consensus
Probab=65.80 E-value=1.4e+02 Score=29.13 Aligned_cols=173 Identities=12% Similarity=0.089 Sum_probs=107.1
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q psy10738 32 LCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYL-GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTL 110 (609)
Q Consensus 32 ~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~ 110 (609)
+.+...-..|+.+-+.+|.++|.+.. +|...-.+...+ .+..+-++++...++- .+....++...-.+.
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYT----VW~yRr~iL~~l~~dL~~El~~l~eI~e~------npKNYQvWHHRr~iv 122 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYT----VWQYRRVILRHLMSDLNKELEYLDEIIED------NPKNYQVWHHRRVIV 122 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccch----HHHHHHHHHHHhHHHHHHHHHHHHHHHHh------CccchhHHHHHHHHH
Confidence 34455667899999999999987644 444444444443 3456666666666554 677788888888888
Q ss_pred HHcCCHH-HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 111 KVMGKYD-EAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 111 ~~~g~~~-~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
...|++. .-+++...++.... ....++...-.+....+. |+.-+.+..+.++.
T Consensus 123 e~l~d~s~rELef~~~~l~~Da------KNYHaWshRqW~~r~F~~--------------------~~~EL~y~~~Lle~ 176 (318)
T KOG0530|consen 123 ELLGDPSFRELEFTKLMLDDDA------KNYHAWSHRQWVLRFFKD--------------------YEDELAYADELLEE 176 (318)
T ss_pred HHhcCcccchHHHHHHHHhccc------cchhhhHHHHHHHHHHhh--------------------HHHHHHHHHHHHHH
Confidence 8889887 77788887776433 334466666777777777 88888888777765
Q ss_pred HHHhCChHHHHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q psy10738 190 MKEINDTAAQGRACGNLGNTYYL-LG-----NFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIF 252 (609)
Q Consensus 190 ~~~~~~~~~~~~~~~~lg~~~~~-~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 252 (609)
-...+. +++..-.+... .| ..+.-+.+..+.+.+.+.+.. ++..|.-++..
T Consensus 177 Di~NNS------AWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeS------aWnYL~G~l~~ 233 (318)
T KOG0530|consen 177 DIRNNS------AWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNES------AWNYLKGLLEL 233 (318)
T ss_pred hhhccc------hhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCcc------HHHHHHHHHHh
Confidence 221111 11111000000 11 223445666777777766655 66666666654
No 411
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=65.19 E-value=36 Score=33.47 Aligned_cols=65 Identities=12% Similarity=0.113 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 59 LSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEI 129 (609)
Q Consensus 59 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 129 (609)
...++..++..+...|+++.++..+++.+.. .+..-.+|..+-..|...|+...|+..|++.-..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIEL------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4567888999999999999999999999988 7777888999999999999999999999988774
No 412
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=65.19 E-value=43 Score=32.94 Aligned_cols=58 Identities=22% Similarity=0.217 Sum_probs=52.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTL 89 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 89 (609)
.++.+...|+++.++..+++.+..+|-+.. +|..+-..|...|+...|+..|++.-..
T Consensus 159 lae~~~~~~~~~~~~~~l~~Li~~dp~~E~----~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 159 LAEALIACGRADAVIEHLERLIELDPYDEP----AYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCccchH----HHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 378888999999999999999999997754 7888889999999999999999998774
No 413
>KOG0276|consensus
Probab=64.97 E-value=50 Score=35.71 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHL 127 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al 127 (609)
|..||.+....|++..|.+++.++.
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhc
Confidence 3444555555555555555554443
No 414
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=64.36 E-value=65 Score=27.49 Aligned_cols=84 Identities=7% Similarity=-0.007 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHHHHH---hCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q psy10738 214 GNFKQAIYYHQERLKIARE---FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY 290 (609)
Q Consensus 214 g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 290 (609)
|.-..-...+++++..... ..+......++...+... + .+.+.|..... .+-....+..|...|..+
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~----~--~~~~if~~l~~----~~IG~~~A~fY~~wA~~l 109 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS----S--DPREIFKFLYS----KGIGTKLALFYEEWAEFL 109 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB----S--HHHHHHHHHHH----HTTSTTBHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc----c--CHHHHHHHHHH----cCccHHHHHHHHHHHHHH
Confidence 4445556677777777644 233333334444444322 1 56666654332 222223477788889999
Q ss_pred HHhCCHHHHHHHHHHHH
Q psy10738 291 TLLRDYPTAIDYHLRHL 307 (609)
Q Consensus 291 ~~~g~~~~A~~~~~~al 307 (609)
...|++++|.+.|+.++
T Consensus 110 e~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 110 EKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHTT-HHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhhC
Confidence 99999999999888764
No 415
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=64.24 E-value=1.8e+02 Score=30.07 Aligned_cols=160 Identities=13% Similarity=0.116 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHHHHHHHHc-------CChhhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHcCC-------
Q psy10738 74 GDYQKAMQYHKQDLTLARNM-------EDKLGEAKSSGNLGNTLKVM----GKYDEAMVCCKRHLEISRQLND------- 135 (609)
Q Consensus 74 g~~~~A~~~~~~al~~~~~~-------~d~~~~~~a~~~lg~~~~~~----g~~~~A~~~~~~al~l~~~~~d------- 135 (609)
.++++|...|..+.....+. +.......+....+.+|..+ ++.+.-+...++-+++....-+
T Consensus 138 ~~f~dAr~vF~~~~~~l~~A~~yf~ld~~~t~hv~I~qd~S~lYk~LafFE~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y 217 (371)
T PF12309_consen 138 LDFDDAREVFLNGQKWLNKAKEYFVLDGFVTDHVQILQDISELYKYLAFFEEDPDRQIKMHKRRADLLEPLLKELNPQYY 217 (371)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 46788888877777665543 33444455666666665544 5666667777666655543311
Q ss_pred cHHHHHHHHHHHHHHHHccccc--cc-----CCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhC-----------ChH
Q psy10738 136 KLSEGRALYNLGNVYHAKGKAI--GK-----VGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIN-----------DTA 197 (609)
Q Consensus 136 ~~~~~~~~~~lg~~~~~~g~~~--~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-----------~~~ 197 (609)
....-..++.+|.+|...=+.. .. .......+...+.......|+.+|+.-++.+.... ...
T Consensus 218 ~~~~rql~fElae~~~~i~dlk~~~~~~~~~~~~~~~~~~~~kin~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~ 297 (371)
T PF12309_consen 218 LNLCRQLWFELAEIYSEIMDLKLEKLDEPQNDNEPPDDHALKKINQLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELR 297 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHHH
Confidence 1122345666666665543310 00 01111111222356677889999999888876322 123
Q ss_pred HHHHHHHHHHHHHHHc--CC-------HHHHHHHHHHHHHHHHHh
Q psy10738 198 AQGRACGNLGNTYYLL--GN-------FKQAIYYHQERLKIAREF 233 (609)
Q Consensus 198 ~~~~~~~~lg~~~~~~--g~-------~~~A~~~~~~al~~~~~~ 233 (609)
....++..+|.+|.+. ++ ...++.+|+..++.+..+
T Consensus 298 ~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~ 342 (371)
T PF12309_consen 298 PYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEKH 342 (371)
T ss_pred HHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4467889999998875 34 445555555555544443
No 416
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=63.40 E-value=85 Score=26.76 Aligned_cols=84 Identities=11% Similarity=-0.075 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHHHHHHHHc---CCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Q psy10738 254 GEYQAASEHYKRTLVLAQDL---GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAH 330 (609)
Q Consensus 254 g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~ 330 (609)
+.-..-...+++++...... .+......++...+... ..+.+.|..... .+-....+..|...|..+
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~------~~~~~if~~l~~----~~IG~~~A~fY~~wA~~l 109 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS------SDPREIFKFLYS----KGIGTKLALFYEEWAEFL 109 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB------SHHHHHHHHHHH----HTTSTTBHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc------cCHHHHHHHHHH----cCccHHHHHHHHHHHHHH
Confidence 45555667788888777543 23333444444444322 266666664332 233344567889999999
Q ss_pred HHcCChHHHHHHHHHHH
Q psy10738 331 AARGNHEKALYFATKHL 347 (609)
Q Consensus 331 ~~~g~~~~A~~~~~~al 347 (609)
...|++++|...|+.++
T Consensus 110 e~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 110 EKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHTT-HHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhhC
Confidence 99999999999998864
No 417
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=62.26 E-value=1.7e+02 Score=30.04 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHccc
Q psy10738 138 SEGRALYNLGNVYHAKGK 155 (609)
Q Consensus 138 ~~~~~~~~lg~~~~~~g~ 155 (609)
..+.+++|+|.+|...|.
T Consensus 104 Eka~VLfNigal~sq~a~ 121 (355)
T cd09241 104 ERANILYNLGALYSQLAL 121 (355)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456688889988888775
No 418
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=61.86 E-value=1.3e+02 Score=27.68 Aligned_cols=63 Identities=16% Similarity=0.037 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy10738 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYK 264 (609)
Q Consensus 202 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 264 (609)
-+...+......|++++|...++++.+...+...........+.-|.+-..+..|-+|...|.
T Consensus 31 r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~ 93 (204)
T COG2178 31 RLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYS 93 (204)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHH
Confidence 345556667788999999999999988777655322222233334444445556666665553
No 419
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=61.43 E-value=1.1e+02 Score=30.15 Aligned_cols=64 Identities=23% Similarity=0.220 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHH
Q psy10738 100 AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEA 179 (609)
Q Consensus 100 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A 179 (609)
...+...+..|...|.+.+|+.+.++++.+.+ ..-..+..+-.++...|+ --.+
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldp------L~e~~nk~lm~~la~~gD--------------------~is~ 332 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDP------LSEQDNKGLMASLATLGD--------------------EISA 332 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCh------hhhHHHHHHHHHHHHhcc--------------------chhh
Confidence 34555667888999999999999999999877 556677788888999999 6777
Q ss_pred HHHHHHHHHH
Q psy10738 180 IKYYEQNLAL 189 (609)
Q Consensus 180 ~~~~~~al~~ 189 (609)
...|++.-+.
T Consensus 333 ~khyerya~v 342 (361)
T COG3947 333 IKHYERYAEV 342 (361)
T ss_pred hhHHHHHHHH
Confidence 7777765443
No 420
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=60.80 E-value=73 Score=24.40 Aligned_cols=25 Identities=8% Similarity=-0.076 Sum_probs=16.2
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 288 NTYTLLRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 288 ~~~~~~g~~~~A~~~~~~al~~~~~ 312 (609)
.-.-..|+|++|+.+|..+++.+..
T Consensus 14 ~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 14 FDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 3344567777777777777766554
No 421
>KOG1914|consensus
Probab=60.71 E-value=2.5e+02 Score=30.38 Aligned_cols=174 Identities=14% Similarity=-0.012 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH---cCCHH
Q psy10738 141 RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYL---LGNFK 217 (609)
Q Consensus 141 ~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~---~g~~~ 217 (609)
..+...+.++...|+ .+++...-+++...|+.++...... ....++.++..--. -..++
T Consensus 287 ~yl~~~s~l~~~~~d-------------~~~a~~~t~e~~~~yEr~I~~l~~~-----~~~Ly~~~a~~eE~~~~~n~~~ 348 (656)
T KOG1914|consen 287 MYLIEISDLLTEKGD-------------VPDAKSLTDEAASIYERAIEGLLKE-----NKLLYFALADYEESRYDDNKEK 348 (656)
T ss_pred HHHHHhhHHHHHhcc-------------cccchhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhHHHhcccchhh
Confidence 334456667777777 1222223456666666666543221 11222223222211 12355
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-HHHHHhCCH
Q psy10738 218 QAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLG-NTYTLLRDY 296 (609)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la-~~~~~~g~~ 296 (609)
....++++.+.+...... .++..+-+.-.+..-.+.|...|.++-+.-... . .++..-| .-|...++.
T Consensus 349 ~~~~~~~~ll~~~~~~~t-----Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~-h-----hVfVa~A~mEy~cskD~ 417 (656)
T KOG1914|consen 349 KVHEIYNKLLKIEDIDLT-----LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR-H-----HVFVAAALMEYYCSKDK 417 (656)
T ss_pred hhHHHHHHHHhhhccCCc-----eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc-c-----hhhHHHHHHHHHhcCCh
Confidence 566667776665443222 245555555555566677777777765533221 1 1222222 135578999
Q ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy10738 297 PTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349 (609)
Q Consensus 297 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l 349 (609)
+-|...|+-.+....+.+ ..-......+..+|+-..|...|++++.-
T Consensus 418 ~~AfrIFeLGLkkf~d~p------~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 418 ETAFRIFELGLKKFGDSP------EYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred hHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 999999998887654422 23333455667788888888888888764
No 422
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=60.62 E-value=1.1e+02 Score=29.29 Aligned_cols=105 Identities=14% Similarity=0.094 Sum_probs=65.2
Q ss_pred HHhcCChHHHHHHHHHHHHhCC---cc-----hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc-CChhhHHHH
Q psy10738 32 LCKAGDCRAGVAFFQAAIQAGT---DD-----LRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM-EDKLGEAKS 102 (609)
Q Consensus 32 ~~~~g~~~~A~~~~~~al~~~~---~~-----~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~d~~~~~~a 102 (609)
++..|+|+.|+++..-||+.+- +. +..++.-....+......|..-+. .+......+.... -.....++.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~~~~dmpd~vrAKl 171 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLTTEWDMPDEVRAKL 171 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHhcCCCChHHHHHH
Confidence 3567999999999999999752 21 223344444455555566652221 1233333332211 123445777
Q ss_pred HHHHHHHHH---------HcCCHHHHHHHHHHHHHHHHHcCCcH
Q psy10738 103 SGNLGNTLK---------VMGKYDEAMVCCKRHLEISRQLNDKL 137 (609)
Q Consensus 103 ~~~lg~~~~---------~~g~~~~A~~~~~~al~l~~~~~d~~ 137 (609)
+...|..+. ..++...|+.++++|+.+.++.|-+.
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~ 215 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKK 215 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHH
Confidence 778888773 45678899999999999988776544
No 423
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=58.91 E-value=1.1e+02 Score=31.69 Aligned_cols=44 Identities=16% Similarity=0.364 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHH
Q psy10738 138 SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKE 192 (609)
Q Consensus 138 ~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 192 (609)
..+.+++++|.+|...|... .......+..|..+|++|-.++.-
T Consensus 105 E~a~vL~N~aa~~s~~a~~~-----------~~~~~~~~k~A~~~fq~AAg~f~~ 148 (377)
T PF03097_consen 105 EKACVLFNIAALYSQLAASQ-----------NRSTDEGLKEACNYFQRAAGIFQY 148 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHS------------TTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc-----------ccccchhHHHHHHHHHHHHHHHHH
Confidence 55778889999998888611 111233467777777777665543
No 424
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=57.46 E-value=2.3e+02 Score=28.93 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHccc
Q psy10738 138 SEGRALYNLGNVYHAKGK 155 (609)
Q Consensus 138 ~~~~~~~~lg~~~~~~g~ 155 (609)
..+.+++++|.+|...|.
T Consensus 109 E~~~vLfn~aa~~s~~a~ 126 (345)
T cd09034 109 ELLSILFNLAALASQLAN 126 (345)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456688899988888776
No 425
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=56.85 E-value=33 Score=35.92 Aligned_cols=51 Identities=14% Similarity=-0.023 Sum_probs=28.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 213 LGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 269 (609)
Q Consensus 213 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 269 (609)
.|+...|-.-...++.-.+..++ .....+.+...+|+|+.|...+..+-.+
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~------~i~l~~~i~~~lg~ye~~~~~~s~~~~~ 352 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPV------LIQLRSVIFSHLGYYEQAYQDISDVEKI 352 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCch------hhHHHHHHHHHhhhHHHHHHHhhchhhh
Confidence 45555555555555554444333 3334566666777777776666544433
No 426
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=55.98 E-value=27 Score=26.84 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQ 50 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~ 50 (609)
..++.+|..+-..|+|++|+.+|..+++
T Consensus 7 i~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 7 VQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3555566666677777777777777665
No 427
>KOG4521|consensus
Probab=55.23 E-value=4.3e+02 Score=31.48 Aligned_cols=151 Identities=14% Similarity=0.049 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHH
Q psy10738 178 EAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQ 257 (609)
Q Consensus 178 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 257 (609)
.|..||.+++.+++..+. .+.+.....+|++..+.. .+..+..+.++=+-+..+|.+-
T Consensus 981 t~lhYYlkv~rlle~hn~--------------------~E~vcQlA~~AIe~l~dd--~ps~a~~~t~vFnhhldlgh~~ 1038 (1480)
T KOG4521|consen 981 TALHYYLKVVRLLEEHNH--------------------AEEVCQLAVKAIENLPDD--NPSVALISTTVFNHHLDLGHWF 1038 (1480)
T ss_pred HHHHHHHHHHHHHHHhcc--------------------HHHHHHHHHHHHHhCCCc--chhHHHHHHHHHHhhhchhhHH
Confidence 367777777776655433 344444555555544322 2334445566666677777777
Q ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHH-----HHHHHHH-H--HHHhcchhhHHHHHHHHHHH
Q psy10738 258 AASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID-----YHLRHLI-I--AQQLMDRVGEGRACWSLGNA 329 (609)
Q Consensus 258 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-----~~~~al~-~--~~~~~~~~~~~~~~~~La~~ 329 (609)
+|...+-+ ..+....-.++..+-.+++..|.++.-.. .-++... + ...-.........|..|--.
T Consensus 1039 qAy~ai~~-------npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAf 1111 (1480)
T KOG4521|consen 1039 QAYKAILR-------NPDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAF 1111 (1480)
T ss_pred HHHHHHHc-------CCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHH
Confidence 76554432 22223334566666677777776543211 0111111 0 00111222334466677778
Q ss_pred HHHcCChHHHHH-HHHHHHHHHHHcCCCc
Q psy10738 330 HAARGNHEKALY-FATKHLEISKQLGDPL 357 (609)
Q Consensus 330 ~~~~g~~~~A~~-~~~~al~l~~~~~~~~ 357 (609)
|...+|+.+|-. .|+.+..+-.+....+
T Consensus 1112 h~~RhN~RkaatvMYEyamrl~se~~~~~ 1140 (1480)
T KOG4521|consen 1112 HVARHNFRKAATVMYEYAMRLESETCMTP 1140 (1480)
T ss_pred HHhhcchhHHHHHHHHHHHHhcccccCCH
Confidence 889999987654 5677777665555444
No 428
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=55.16 E-value=1e+02 Score=29.33 Aligned_cols=111 Identities=10% Similarity=0.029 Sum_probs=57.1
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc-hhhHHHH
Q psy10738 250 HIFLGEYQAASEHYKRTLVLAQDLGDR------AVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD-RVGEGRA 322 (609)
Q Consensus 250 ~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 322 (609)
.+..|+|+.|+++..-+++......+. ...+.-...-+......|..-+. .++.....+.....- ....+..
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~~~~dmpd~vrAKl 171 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLTTEWDMPDEVRAKL 171 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHhcCCCChHHHHHH
Confidence 345566666666666666554333221 11222223333344444442221 123333333222111 2234455
Q ss_pred HHHHHHHHH---------HcCChHHHHHHHHHHHHHHHHcCCCchHHH
Q psy10738 323 CWSLGNAHA---------ARGNHEKALYFATKHLEISKQLGDPLGQVT 361 (609)
Q Consensus 323 ~~~La~~~~---------~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 361 (609)
+..+|..+. ..++...|+.++++|+++..+.|-.....+
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~ 219 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIER 219 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHH
Confidence 666677663 446778999999999999877776544433
No 429
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=55.14 E-value=30 Score=25.80 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQ 50 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~ 50 (609)
..++..|..+-..|++++|+.+|.++++
T Consensus 6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 6 IELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445556666666676666666666655
No 430
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=54.85 E-value=95 Score=23.78 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=12.7
Q ss_pred hCCHHHHHHHHHHHHHHHHH
Q psy10738 73 LGDYQKAMQYHKQDLTLARN 92 (609)
Q Consensus 73 ~g~~~~A~~~~~~al~~~~~ 92 (609)
.|+|++|+.+|.++++.+..
T Consensus 19 ~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 19 KGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 46666666666666666544
No 431
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=54.14 E-value=2.1e+02 Score=27.61 Aligned_cols=59 Identities=7% Similarity=0.023 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH-cCCHHHHHHHHHH
Q psy10738 64 SQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKV-MGKYDEAMVCCKR 125 (609)
Q Consensus 64 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~-~g~~~~A~~~~~~ 125 (609)
..++.+.-..++|++.+.+.+++++... .......-...++.+|.. .|....+...+..
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~---~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s 64 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVD---SEELTVEERNLLSVAYKNVIGARRASWRIISS 64 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcC---CccCCHHHHHHHHHHHhhhhcccHHHHHHHhH
Confidence 4567778888999999999988766411 011222333444444433 3555555555543
No 432
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=53.91 E-value=99 Score=23.75 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q psy10738 21 MCLELALEGERLCKAGDCRAGVAFFQAAIQA 51 (609)
Q Consensus 21 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~ 51 (609)
....++.+|..+-..|+|++|+.+|.++++.
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4457778888899999999999999999874
No 433
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=53.27 E-value=2.8e+02 Score=28.66 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHccc
Q psy10738 138 SEGRALYNLGNVYHAKGK 155 (609)
Q Consensus 138 ~~~~~~~~lg~~~~~~g~ 155 (609)
..+.+++|+|.+|...|-
T Consensus 112 Eka~vlfNigal~sq~a~ 129 (361)
T cd09239 112 EEASVLYNIGALHSQLGA 129 (361)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456788899999888775
No 434
>PF12854 PPR_1: PPR repeat
Probab=52.37 E-value=32 Score=21.48 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHH
Q psy10738 242 ANSNLGNSHIFLGEYQAASEHYK 264 (609)
Q Consensus 242 ~~~~la~~~~~~g~~~~A~~~~~ 264 (609)
.|..+-..|.+.|+.++|.+.++
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH
Confidence 44555555555555555555554
No 435
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=52.20 E-value=1.1e+02 Score=23.53 Aligned_cols=34 Identities=12% Similarity=-0.037 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q psy10738 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 313 (609)
Q Consensus 280 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 313 (609)
+..+...|.-+-..|++.+|+.+|+++++...+.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~ 39 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI 39 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 3445555666667788888888888877766553
No 436
>KOG1310|consensus
Probab=52.13 E-value=70 Score=34.13 Aligned_cols=89 Identities=17% Similarity=0.102 Sum_probs=64.4
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q psy10738 67 GNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVM---GKYDEAMVCCKRHLEISRQLNDKLSEGRAL 143 (609)
Q Consensus 67 g~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~---g~~~~A~~~~~~al~l~~~~~d~~~~~~~~ 143 (609)
|+-.+..+....|+..|.+++.. .+.....+.+.+.++... |+.-.|+.-+..|+.+.+ ....++
T Consensus 381 gnd~ly~~~~~~~i~~~s~a~q~------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~------s~~kah 448 (758)
T KOG1310|consen 381 GNDGLYESIVSGAISHYSRAIQY------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNP------SIQKAH 448 (758)
T ss_pred ccchhhhHHHHHHHHHHHHHhhh------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCCh------HHHHHH
Confidence 33334445566777777777776 555666677777666654 566677887888887766 777899
Q ss_pred HHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHH
Q psy10738 144 YNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNL 187 (609)
Q Consensus 144 ~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 187 (609)
+.|+.++..+++ +.+|+.+...+.
T Consensus 449 ~~la~aL~el~r--------------------~~eal~~~~alq 472 (758)
T KOG1310|consen 449 FRLARALNELTR--------------------YLEALSCHWALQ 472 (758)
T ss_pred HHHHHHHHHHhh--------------------HHHhhhhHHHHh
Confidence 999999999999 899988765543
No 437
>KOG2280|consensus
Probab=52.10 E-value=3.9e+02 Score=30.10 Aligned_cols=103 Identities=15% Similarity=0.029 Sum_probs=59.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q psy10738 209 TYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGN 288 (609)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 288 (609)
-+...|+..+|.+.- .+..-+.. +.|......+...+++++-.++ ++....+ ..|.-.-.
T Consensus 693 ~li~~g~~k~a~ql~-------~~FkipdK--r~~wLk~~aLa~~~kweeLekf-------AkskksP----IGy~PFVe 752 (829)
T KOG2280|consen 693 TLILIGQNKRAEQLK-------SDFKIPDK--RLWWLKLTALADIKKWEELEKF-------AKSKKSP----IGYLPFVE 752 (829)
T ss_pred HHHHccchHHHHHHH-------HhcCCcch--hhHHHHHHHHHhhhhHHHHHHH-------HhccCCC----CCchhHHH
Confidence 344566666555443 33222222 2444555666677777654333 3332222 22333456
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy10738 289 TYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATK 345 (609)
Q Consensus 289 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~ 345 (609)
++...|+.++|.+|+-+.-... ....+|...|++.+|.+..-+
T Consensus 753 ~c~~~~n~~EA~KYiprv~~l~--------------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGGLQ--------------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhcccHHHHhhhhhccCChH--------------HHHHHHHHhccHHHHHHHHHH
Confidence 7788999999998876543221 467788899999998876444
No 438
>PRK12798 chemotaxis protein; Reviewed
Probab=51.75 E-value=3e+02 Score=28.71 Aligned_cols=206 Identities=14% Similarity=-0.003 Sum_probs=109.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q psy10738 66 LGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYN 145 (609)
Q Consensus 66 lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~ 145 (609)
-|..-+..|+-.++.+.+........ +....-......-......+...|+.+|..+-=+.+-. ...--++..
T Consensus 118 ~g~laY~~Gr~~~a~~~La~i~~~~l----~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGT---LvEEAALRR 190 (421)
T PRK12798 118 DGALAYLSGRGREARKLLAGVAPEYL----PAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGT---LVEEAALRR 190 (421)
T ss_pred HHHHHHHcCCHHHHHHHhhcCChhhc----CchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCch---HHHHHHHHH
Confidence 34455566777777777665443321 12222222222233344567777888888776555411 112224444
Q ss_pred HHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10738 146 LGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQE 225 (609)
Q Consensus 146 lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 225 (609)
--.+....|+ .+++..+..+.+.- +...+................++-. -...+..
T Consensus 191 si~la~~~g~--------------------~~rf~~la~~Y~rR---F~~S~YA~~F~~~F~~~~~~~~d~~-~~~~l~~ 246 (421)
T PRK12798 191 SLFIAAQLGD--------------------ADKFEALARNYLRR---FRHSPYASQFAQRFVDLVVRLDDEI-RDARLVE 246 (421)
T ss_pred hhHHHHhcCc--------------------HHHHHHHHHHHHHH---hccCchHHHHHHHHHHHHHhccccc-cHHHHHH
Confidence 4445566676 66666665544433 3333333334444444444333211 1112333
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 226 RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLR 305 (609)
Q Consensus 226 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 305 (609)
.+.. -++......|..++..-...|+.+-|.-.-++++.+..........+..|. |....-..++++|+..+..
T Consensus 247 ~ls~----~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~--aaa~v~s~~~~~al~~L~~ 320 (421)
T PRK12798 247 ILSF----MDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYR--GAALVASDDAESALEELSQ 320 (421)
T ss_pred HHHh----cCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHH--HHHccCcccHHHHHHHHhc
Confidence 3322 233444557888888888888888888888888888854433333444444 4444455668888887777
Q ss_pred HHH
Q psy10738 306 HLI 308 (609)
Q Consensus 306 al~ 308 (609)
.-.
T Consensus 321 I~~ 323 (421)
T PRK12798 321 IDR 323 (421)
T ss_pred CCh
Confidence 643
No 439
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=50.92 E-value=55 Score=20.92 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCK 124 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~ 124 (609)
.++.+|..+..+|++++|+..+.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 45566777777777777777743
No 440
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=50.72 E-value=56 Score=20.91 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHH
Q psy10738 282 ACYSLGNTYTLLRDYPTAIDYH 303 (609)
Q Consensus 282 ~~~~la~~~~~~g~~~~A~~~~ 303 (609)
.++.+|..+...|++++|+.++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~ 24 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFF 24 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHH
Confidence 3455566666666666666663
No 441
>PF12854 PPR_1: PPR repeat
Probab=50.38 E-value=37 Score=21.20 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10738 200 GRACGNLGNTYYLLGNFKQAIYYHQE 225 (609)
Q Consensus 200 ~~~~~~lg~~~~~~g~~~~A~~~~~~ 225 (609)
..+|..+-..|.+.|+.++|.+.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 35788899999999999999999875
No 442
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=49.62 E-value=2.2e+02 Score=29.20 Aligned_cols=38 Identities=11% Similarity=-0.011 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q psy10738 236 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL 273 (609)
Q Consensus 236 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 273 (609)
....+.+++..|......+++.+|+.+++.|.......
T Consensus 240 ~~f~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a 277 (348)
T cd09242 240 HYYKSLAAYYHALALEAAGKYGEAIAYLTQAESILKEA 277 (348)
T ss_pred HHHHHHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHHH
Confidence 35556688888888888899999999999888887766
No 443
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=49.44 E-value=3e+02 Score=28.00 Aligned_cols=36 Identities=19% Similarity=0.057 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc
Q psy10738 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD 315 (609)
Q Consensus 280 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 315 (609)
+.+++.+|..+...+++-+|+.+++.|.........
T Consensus 251 a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~~~~ 286 (345)
T cd09034 251 ALAYYYHGLKLDEANKIGEAIARLQAALELLKESER 286 (345)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 556666666667777777777777777777666643
No 444
>KOG0128|consensus
Probab=49.21 E-value=4.5e+02 Score=29.98 Aligned_cols=158 Identities=16% Similarity=0.041 Sum_probs=84.2
Q ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH--H-HHHcCCHHH
Q psy10738 42 VAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN--T-LKVMGKYDE 118 (609)
Q Consensus 42 ~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~--~-~~~~g~~~~ 118 (609)
+..++.-+.+++.+. ..+..|-.+.+..|++++-...-.++.+++ +.....|..... + ....+.-.+
T Consensus 99 i~t~~ee~ai~~y~~----~~~v~Li~llrk~~dl~kl~~ar~~~~~~~------pl~~~lWl~Wl~d~~~mt~s~~~~~ 168 (881)
T KOG0128|consen 99 IRTLEEELAINSYKY----AQMVQLIGLLRKLGDLEKLRQARLEMSEIA------PLPPHLWLEWLKDELSMTQSEERKE 168 (881)
T ss_pred HHHHHHHhcccccch----HHHHHHHHHHHHhcchHHHHHHHHHHHHhc------CCChHHHHHHHHHHHhhccCcchhH
Confidence 344444444444332 255667777788898887766666655552 222333322222 1 122367778
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh-CChH
Q psy10738 119 AMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI-NDTA 197 (609)
Q Consensus 119 A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~ 197 (609)
+...|++++.-..........+......+..+...++ ++.-...+.+++...... ..-.
T Consensus 169 v~~~~ekal~dy~~v~iw~e~~~y~~~~~~~~~~~~d--------------------~k~~R~vf~ral~s~g~~~t~G~ 228 (881)
T KOG0128|consen 169 VEELFEKALGDYNSVPIWEEVVNYLVGFGNVAKKSED--------------------YKKERSVFERALRSLGSHITEGA 228 (881)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHhcccccccccc--------------------chhhhHHHHHHHhhhhhhhcccH
Confidence 8888888876554333333333334444444445455 777777777777654332 1122
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 198 AQGRACGNLGNTYYLLGNFKQAIYYHQERLKI 229 (609)
Q Consensus 198 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 229 (609)
.....|......|...-..++-+.++...+..
T Consensus 229 ~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~ 260 (881)
T KOG0128|consen 229 AIWEMYREFEVTYLCNVEQRQVIALFVRELKQ 260 (881)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 33445555555555554445666666655543
No 445
>KOG2063|consensus
Probab=49.04 E-value=3.2e+02 Score=31.71 Aligned_cols=99 Identities=11% Similarity=-0.072 Sum_probs=54.1
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH---HHhCCHHHHHHH--HHHHHHHHHHhcc--------h
Q psy10738 250 HIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY---TLLRDYPTAIDY--HLRHLIIAQQLMD--------R 316 (609)
Q Consensus 250 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~--~~~al~~~~~~~~--------~ 316 (609)
|+.....+-++.|++..+......+.......+...+..+. ...++-++|.+. .++.....+.... .
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~ 680 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLER 680 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhh
Confidence 45667788889999988876655332222222222222222 112223345555 3333333322211 1
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy10738 317 VGEGRACWSLGNAHAARGNHEKALYFATKHLE 348 (609)
Q Consensus 317 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 348 (609)
......|...+.++.++|++++|+..|-.-+.
T Consensus 681 ~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 681 LNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred ccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 11245677788888999999999988766554
No 446
>KOG2422|consensus
Probab=48.79 E-value=3.9e+02 Score=29.14 Aligned_cols=170 Identities=13% Similarity=0.017 Sum_probs=102.5
Q ss_pred HhHHHHHHHHHHHHHHHHHh------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCh-----------
Q psy10738 174 VCLQEAIKYYEQNLALMKEI------NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDK----------- 236 (609)
Q Consensus 174 ~~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------- 236 (609)
..|++|...|.-+.....-. .+.+.....+..++.+...+|+.+-|....++++-.....-.+
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 44888888887777654322 3456778899999999999999999999999988765542111
Q ss_pred -------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Q psy10738 237 -------AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNT-YTLLRDYPTAIDYHLRHLI 308 (609)
Q Consensus 237 -------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~ 308 (609)
.....+++..-..+...|-+..|.++++-.+.+.+. .++. +...+-.+ .+...+|.=-+.+++..-.
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~-eDPl----~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPS-EDPL----GILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc-CCch----hHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 111223333444556789999999999888877654 2322 22222233 3445566555555544321
Q ss_pred HHHHhcchhhHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHH
Q psy10738 309 IAQQLMDRVGEGRACWSLGNAHAARGN---HEKALYFATKHLEIS 350 (609)
Q Consensus 309 ~~~~~~~~~~~~~~~~~La~~~~~~g~---~~~A~~~~~~al~l~ 350 (609)
. ..+...+ ....-..||..|..... ...|...+.+|+.+.
T Consensus 407 ~-n~l~~~P-N~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 407 M-NKLSQLP-NFGYSLALARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred h-ccHhhcC-CchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 1 1111111 11122345666666555 567888888888765
No 447
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=48.75 E-value=2e+02 Score=29.41 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHH
Q psy10738 138 SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMK 191 (609)
Q Consensus 138 ~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 191 (609)
..+.+++|+|.+|...+.... ....+....|..+|++|--++.
T Consensus 105 Eka~VLfNiaal~s~~A~~~~-----------~~~~~~~K~A~~~fq~AAG~f~ 147 (348)
T cd09242 105 EKASVLFNIGALLSQLAAEKY-----------REDEDDLKEAITNLQQAAGCFQ 147 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----------cCChHHHHHHHHHHHHHHHHHH
Confidence 456688888888888776110 0022336777777777665554
No 448
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=48.37 E-value=49 Score=25.60 Aligned_cols=28 Identities=21% Similarity=0.100 Sum_probs=17.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHc
Q psy10738 326 LGNAHAARGNHEKALYFATKHLEISKQL 353 (609)
Q Consensus 326 La~~~~~~g~~~~A~~~~~~al~l~~~~ 353 (609)
.|..+...|+.++|+.+|++++....+.
T Consensus 14 kaL~~dE~g~~e~Al~~Y~~gi~~l~eg 41 (79)
T cd02679 14 KALRADEWGDKEQALAHYRKGLRELEEG 41 (79)
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 3334445577777777777777766543
No 449
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=47.52 E-value=14 Score=28.63 Aligned_cols=16 Identities=31% Similarity=0.690 Sum_probs=13.6
Q ss_pred CCCCCchhHHHHHHHh
Q psy10738 562 GSTVPDEDFFSLITRL 577 (609)
Q Consensus 562 ~~~~~~~~~~~~~~~~ 577 (609)
.|.+|+||||+.|+|.
T Consensus 9 p~ei~Eet~~e~llRY 24 (85)
T PF06783_consen 9 PPEIPEETFFENLLRY 24 (85)
T ss_pred CccCCcchHHHHHHHH
Confidence 4779999999999984
No 450
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=46.79 E-value=3.5e+02 Score=28.01 Aligned_cols=174 Identities=11% Similarity=0.046 Sum_probs=95.8
Q ss_pred CCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhCC---h---
Q psy10738 167 EYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLL----GNFKQAIYYHQERLKIAREFGD---K--- 236 (609)
Q Consensus 167 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~~~~~~---~--- 236 (609)
...++++..|..+..++.+|...+.-.+.......+....+.+|..+ ++.+.-+..+++-+++...... +
T Consensus 138 ~~f~dAr~vF~~~~~~l~~A~~yf~ld~~~t~hv~I~qd~S~lYk~LafFE~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y 217 (371)
T PF12309_consen 138 LDFDDAREVFLNGQKWLNKAKEYFVLDGFVTDHVQILQDISELYKYLAFFEEDPDRQIKMHKRRADLLEPLLKELNPQYY 217 (371)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 34556666777777777777777666666666677777777776543 6677778888887776665321 1
Q ss_pred -HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q psy10738 237 -AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD--LGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 313 (609)
Q Consensus 237 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 313 (609)
......++.+|.+|...=+.. +..... .+........... ...-...|+.+|+..+......
T Consensus 218 ~~~~rql~fElae~~~~i~dlk---------~~~~~~~~~~~~~~~~~~~~k------in~l~~~ai~~y~~fl~s~~~~ 282 (371)
T PF12309_consen 218 LNLCRQLWFELAEIYSEIMDLK---------LEKLDEPQNDNEPPDDHALKK------INQLCSKAIKYYQKFLDSYKSP 282 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHhhhhcccCCCCChHHHHH------HHHHHHHHHHHHHHHHHHHcCC
Confidence 112334455555554332221 011110 0000000111111 1112346777777777665532
Q ss_pred c-----------chhhHHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHHHHcCC
Q psy10738 314 M-----------DRVGEGRACWSLGNAHAAR---------GNHEKALYFATKHLEISKQLGD 355 (609)
Q Consensus 314 ~-----------~~~~~~~~~~~La~~~~~~---------g~~~~A~~~~~~al~l~~~~~~ 355 (609)
. .......+++.+|++|.+. ++..+++.+|+..++.......
T Consensus 283 ~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~~~ 344 (371)
T PF12309_consen 283 DSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEKHPE 344 (371)
T ss_pred ccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 1 1234556788889988766 4566777777777777765543
No 451
>KOG2396|consensus
Probab=46.66 E-value=2.2e+02 Score=30.44 Aligned_cols=83 Identities=10% Similarity=-0.028 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC-HHH
Q psy10738 40 AGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGK-YDE 118 (609)
Q Consensus 40 ~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~-~~~ 118 (609)
.-+..|+.|....++|+. +|..........+.+.+--..|.+++.. +|..+..|..-|.-.+..+. .+.
T Consensus 89 rIv~lyr~at~rf~~D~~----lW~~yi~f~kk~~~~~~v~ki~~~~l~~------Hp~~~dLWI~aA~wefe~n~ni~s 158 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVK----LWLSYIAFCKKKKTYGEVKKIFAAMLAK------HPNNPDLWIYAAKWEFEINLNIES 158 (568)
T ss_pred HHHHHHHHHHHhcCCCHH----HHHHHHHHHHHhcchhHHHHHHHHHHHh------CCCCchhHHhhhhhHHhhccchHH
Confidence 445677778777777754 4555555555566688888888888888 77777788777776666655 888
Q ss_pred HHHHHHHHHHHHHH
Q psy10738 119 AMVCCKRHLEISRQ 132 (609)
Q Consensus 119 A~~~~~~al~l~~~ 132 (609)
|...+.+++...+.
T Consensus 159 aRalflrgLR~npd 172 (568)
T KOG2396|consen 159 ARALFLRGLRFNPD 172 (568)
T ss_pred HHHHHHHHhhcCCC
Confidence 88888888887663
No 452
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=44.99 E-value=80 Score=23.44 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=15.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 207 GNTYYLLGNFKQAIYYHQERLKIAR 231 (609)
Q Consensus 207 g~~~~~~g~~~~A~~~~~~al~~~~ 231 (609)
|.-.-..|++++|+.+|.++++...
T Consensus 12 Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 12 AVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3334456777777777777766543
No 453
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=44.52 E-value=3.8e+02 Score=27.78 Aligned_cols=58 Identities=17% Similarity=0.103 Sum_probs=41.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHHH--HHhCCHHHHHHHHHH
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGTD-DLRTLSAIYSQLGNAY--FYLGDYQKAMQYHKQ 85 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~a~~~~~lg~~~--~~~g~~~~A~~~~~~ 85 (609)
.+..++..++|..|...|.+++...+. ........+..+..+| +..-++++|.+++++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 466899999999999999999987432 1222234555555554 556788999999985
No 454
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=44.38 E-value=3.7e+02 Score=27.54 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc
Q psy10738 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD 315 (609)
Q Consensus 280 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 315 (609)
+.+++..|..+...+++-+|+..++.|.........
T Consensus 255 a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~~a~~ 290 (346)
T cd09240 255 ALAEYHQSLVAKAQKKFGEEIARLQHALELIKTAQS 290 (346)
T ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHH
Confidence 445556666677777888888888887777766643
No 455
>KOG4151|consensus
Probab=44.25 E-value=46 Score=37.17 Aligned_cols=95 Identities=23% Similarity=0.297 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHcCChhhH
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYL--GDYQKAMQYHKQDLTLARNMEDKLGE 99 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~d~~~~ 99 (609)
.+++..+|..++..+++..|.--|..++.+-|.+....+....+.+.+|... |+|.+++.-...++.. .+..
T Consensus 53 a~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~------~p~i 126 (748)
T KOG4151|consen 53 ALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALES------QPRI 126 (748)
T ss_pred HHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhc------cchH
Confidence 4455667999999999999999999999998877766777778888877764 6888888888888877 6777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHH
Q psy10738 100 AKSSGNLGNTLKVMGKYDEAMVC 122 (609)
Q Consensus 100 ~~a~~~lg~~~~~~g~~~~A~~~ 122 (609)
..++...+.+|...+.++-|++-
T Consensus 127 ~~~Ll~r~~~y~al~k~d~a~rd 149 (748)
T KOG4151|consen 127 SKALLKRARKYEALNKLDLAVRD 149 (748)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHH
Confidence 78888888888888887777665
No 456
>KOG2422|consensus
Probab=44.04 E-value=4.6e+02 Score=28.62 Aligned_cols=98 Identities=13% Similarity=0.099 Sum_probs=67.8
Q ss_pred hcCChHHHHHHHHHHHHhCC-c-------chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-----------
Q psy10738 34 KAGDCRAGVAFFQAAIQAGT-D-------DLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNME----------- 94 (609)
Q Consensus 34 ~~g~~~~A~~~~~~al~~~~-~-------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----------- 94 (609)
....|++|...|.-|....+ + +.......+..++.+...+|+.+.|....+++|=.....-
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 34567888888888877533 2 1223456788999999999999999999999886655421
Q ss_pred -------ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 95 -------DKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 95 -------d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
.......+++..-..+...|=+..|.++++-.+.+.+
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp 373 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDP 373 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 0112233444444556677889999999988887765
No 457
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=43.86 E-value=37 Score=19.90 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q psy10738 203 CGNLGNTYYLLGNFKQAIYYHQER 226 (609)
Q Consensus 203 ~~~lg~~~~~~g~~~~A~~~~~~a 226 (609)
|..+-..|...|++++|...+++.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHH
Confidence 445555666666666666666554
No 458
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=43.55 E-value=73 Score=24.68 Aligned_cols=23 Identities=22% Similarity=0.118 Sum_probs=14.4
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 210 YYLLGNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~ 232 (609)
+-..|+.++|+.+|++++....+
T Consensus 18 ~dE~g~~e~Al~~Y~~gi~~l~e 40 (79)
T cd02679 18 ADEWGDKEQALAHYRKGLRELEE 40 (79)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHH
Confidence 33456667777777777666554
No 459
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=43.29 E-value=1.3e+02 Score=22.00 Aligned_cols=57 Identities=19% Similarity=0.149 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHH--HHHHHHHHHHHHHhCCHHHHHHH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTL--SAIYSQLGNAYFYLGDYQKAMQY 82 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--a~~~~~lg~~~~~~g~~~~A~~~ 82 (609)
+..|..++..|+|=+|-+.++.+-...+++.... +-+....|......|+..-|...
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 3468889999999999999999987655443333 33444445566677888877654
No 460
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=42.65 E-value=1.5e+02 Score=22.68 Aligned_cols=30 Identities=13% Similarity=0.009 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy10738 281 QACYSLGNTYTLLRDYPTAIDYHLRHLIIA 310 (609)
Q Consensus 281 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 310 (609)
..+...|.-+-..|+|++|+.+|..+++.+
T Consensus 7 i~~a~~Ave~D~~g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 7 VQFARLAVQRDQEGRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 334444555555566666666666665554
No 461
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=42.45 E-value=4e+02 Score=27.39 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHcc
Q psy10738 138 SEGRALYNLGNVYHAKG 154 (609)
Q Consensus 138 ~~~~~~~~lg~~~~~~g 154 (609)
..+.+++++|.+|...+
T Consensus 107 Ek~sVLfNigal~s~~A 123 (353)
T cd09243 107 ELASMLFNVALWYTKHA 123 (353)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45667888888886543
No 462
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=41.50 E-value=2.8e+02 Score=28.68 Aligned_cols=36 Identities=19% Similarity=0.064 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc
Q psy10738 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD 315 (609)
Q Consensus 280 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 315 (609)
+.+++..|......+++-+|+.+++.|.........
T Consensus 239 A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a~~ 274 (377)
T PF03097_consen 239 ALAHYHQALAAEEAKKYGEAIARLRRAEEALKEASK 274 (377)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Confidence 556666677777778888888888887777766643
No 463
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=41.50 E-value=4.6e+02 Score=27.79 Aligned_cols=92 Identities=9% Similarity=-0.005 Sum_probs=60.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q psy10738 210 YYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNT 289 (609)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 289 (609)
|...|++..|-..|+-.+...++.+- .....-..++..++-+.|...|++++...... .....|-.+-..
T Consensus 442 ~~~~~d~~ta~~ifelGl~~f~d~~~------y~~kyl~fLi~inde~naraLFetsv~r~~~~----q~k~iy~kmi~Y 511 (660)
T COG5107 442 YYATGDRATAYNIFELGLLKFPDSTL------YKEKYLLFLIRINDEENARALFETSVERLEKT----QLKRIYDKMIEY 511 (660)
T ss_pred HHhcCCcchHHHHHHHHHHhCCCchH------HHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHh----hhhHHHHHHHHH
Confidence 55689999999999988876554332 22223345677899999999999988766543 123345555555
Q ss_pred HHHhCCHHHHHHHHHHHHHHHH
Q psy10738 290 YTLLRDYPTAIDYHLRHLIIAQ 311 (609)
Q Consensus 290 ~~~~g~~~~A~~~~~~al~~~~ 311 (609)
-..-|+...++..-++.....+
T Consensus 512 Es~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 512 ESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHhhcchHHHHhHHHHHHHHcC
Confidence 5666777766665555554444
No 464
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=41.42 E-value=3.6e+02 Score=27.67 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q psy10738 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 313 (609)
Q Consensus 280 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 313 (609)
+.+++..|......+++-+++..++.|+....+.
T Consensus 237 A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~l~~a 270 (355)
T cd09241 237 AAAHYRMALVALEKSKYGEEVARLRVALAACKEA 270 (355)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666667777777666655444
No 465
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=39.61 E-value=63 Score=19.31 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=16.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10738 203 CGNLGNTYYLLGNFKQAIYYHQERL 227 (609)
Q Consensus 203 ~~~lg~~~~~~g~~~~A~~~~~~al 227 (609)
|+.+-..|...|++++|.+.|.+..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455566667777777777766543
No 466
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=39.09 E-value=3.9e+02 Score=26.35 Aligned_cols=123 Identities=11% Similarity=0.008 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHh---CCh----HHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy10738 176 LQEAIKYYEQNLALMKEI---NDT----AAQGRACGNLG-NTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLG 247 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~---~~~----~~~~~~~~~lg-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 247 (609)
|..|++..+++++..... .++ ...-..+.-+| .++..++++.+++.+.-+-...-++.+.+ +.-.-.
T Consensus 51 F~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpk-----IleLCI 125 (309)
T PF07163_consen 51 FQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPK-----ILELCI 125 (309)
T ss_pred HHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH-----HHHHHH
Confidence 888888888888776322 111 11122233333 35667788888777665544433333221 222223
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q psy10738 248 NSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 303 (609)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 303 (609)
..|.+.|++....+.-..-+.--.+.+-+.....+-..+-.++.=+|.+++|.++.
T Consensus 126 LLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 126 LLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 45677777777666555544322221222222223333444555567777777765
No 467
>KOG0889|consensus
Probab=39.08 E-value=1.2e+03 Score=31.91 Aligned_cols=163 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC----C
Q psy10738 20 NMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNME----D 95 (609)
Q Consensus 20 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----d 95 (609)
..+.....-|..+.+.|-++.++..+.+...+..-.....-.-+..-+.+|.... ..+..+++.....+ .
T Consensus 2734 e~A~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~------~e~~~gLevi~sTNl~yF~ 2807 (3550)
T KOG0889|consen 2734 ELAWAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNK------NELKTGLEVIESTNLMYFS 2807 (3550)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCh------HHHHHHHHHHhcccHHHHh
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHh-HH
Q psy10738 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEV-KV 174 (609)
Q Consensus 96 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~-~~ 174 (609)
....+..+...|..+.+.|+.++|-..|..|+.+.. ....+|...|......-. .+.. ..
T Consensus 2808 ~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~------~l~KaW~~Wg~y~~~~f~-------------~e~~ni~ 2868 (3550)
T KOG0889|consen 2808 DRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDD------GLGKAWAEWGKYLDNRFN-------------KEPVNIS 2868 (3550)
T ss_pred hHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHh-------------ccCcccH
Q ss_pred hHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy10738 175 CLQEAIKYYEQNLALMKEINDTAAQGRACGNLG 207 (609)
Q Consensus 175 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 207 (609)
--..|+.+|-+|.......+..+..+.++..+.
T Consensus 2869 ~a~~avsCyLqA~~~~~~skaRk~iakvLwLls 2901 (3550)
T KOG0889|consen 2869 FACNAVSCYLQAARLYNSSKARKLIAKVLWLLS 2901 (3550)
T ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
No 468
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=38.89 E-value=4.6e+02 Score=27.06 Aligned_cols=34 Identities=9% Similarity=-0.004 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q psy10738 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 313 (609)
Q Consensus 280 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 313 (609)
+.+++..|......+++-+++..++.|.....+.
T Consensus 252 A~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~~l~~a 285 (361)
T cd09239 252 SIAHLHMGKQSEEQQKMGERVAYYQLANDKLEEA 285 (361)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555566666666666666644333
No 469
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=38.72 E-value=70 Score=24.24 Aligned_cols=27 Identities=15% Similarity=0.351 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQ 50 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~ 50 (609)
.++..|...-..|++++|+.+|..+++
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555556666666666666655
No 470
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=38.70 E-value=1.7e+02 Score=22.14 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQA 51 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~ 51 (609)
+..++.+|...-..|+|++|+.+|.++++.
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456777888888999999999999999874
No 471
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=38.40 E-value=82 Score=24.21 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=21.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
...|.-.-..|+|++|+.+|.++++.+.
T Consensus 10 ~~~Ave~D~~g~y~eAl~~Y~~aie~l~ 37 (77)
T cd02683 10 LKRAVELDQEGRFQEALVCYQEGIDLLM 37 (77)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3344555677999999999999998765
No 472
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=38.06 E-value=1.2e+02 Score=29.51 Aligned_cols=72 Identities=17% Similarity=0.154 Sum_probs=60.5
Q ss_pred chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 55 DLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQ 132 (609)
Q Consensus 55 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 132 (609)
+...+.....++=..+...++++.|..+.++.+.+ .|..+.-+.-.|.+|..+|-+.-|++-+...++..++
T Consensus 176 ~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~ 247 (269)
T COG2912 176 NREILSRLLRNLKAALLRELQWELALRVAERLLDL------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPD 247 (269)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhh------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 34456677777888888999999999999999998 6777777888899999999999999999987777663
No 473
>KOG0128|consensus
Probab=37.93 E-value=6.7e+02 Score=28.72 Aligned_cols=224 Identities=11% Similarity=0.002 Sum_probs=114.0
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHh
Q psy10738 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVC 175 (609)
Q Consensus 96 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 175 (609)
.......+..|-.++...|++++-...-.++.++++ .....|.....-...+-. .+.
T Consensus 109 ~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~p------l~~~lWl~Wl~d~~~mt~----------s~~------- 165 (881)
T KOG0128|consen 109 NSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAP------LPPHLWLEWLKDELSMTQ----------SEE------- 165 (881)
T ss_pred cccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC------CChHHHHHHHHHHHhhcc----------Ccc-------
Confidence 555566777788888899998876666666666655 222222222221111111 011
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHhC
Q psy10738 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD-KAAERRANSNLGNSHIFLG 254 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g 254 (609)
-..+...|++++.-..........+......+..+...++++.-...|.+++......-. .......|..+-..|...-
T Consensus 166 ~~~v~~~~ekal~dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~ 245 (881)
T KOG0128|consen 166 RKEVEELFEKALGDYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNV 245 (881)
T ss_pred hhHHHHHHHHHhcccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhH
Confidence 455556666665443332223333444444555667778899999999999876544322 2223345555555665555
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH--HH-HHHhCCHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHH
Q psy10738 255 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLG--NT-YTLLRDYPTAIDYHLRHLIIAQQLMD-RVGEGRACWSLGNAH 330 (609)
Q Consensus 255 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la--~~-~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~La~~~ 330 (609)
..++-+.++...+... -+.......+.... .+ .....+++.|..-+.+.+........ .......+..+-...
T Consensus 246 ~~~qv~a~~~~el~~~---~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe 322 (881)
T KOG0128|consen 246 EQRQVIALFVRELKQP---LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFE 322 (881)
T ss_pred HHHHHHHHHHHHHhcc---chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5566666666655543 12222222333222 22 23445667776666665554444322 111222344444445
Q ss_pred HHcCChHHHHHHHHH
Q psy10738 331 AARGNHEKALYFATK 345 (609)
Q Consensus 331 ~~~g~~~~A~~~~~~ 345 (609)
...|++..-...+++
T Consensus 323 ~~~G~p~ri~l~~eR 337 (881)
T KOG0128|consen 323 KKSGDPVRIQLIEER 337 (881)
T ss_pred HhcCCchHHHHHHHH
Confidence 555554433333333
No 474
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=37.77 E-value=4.6e+02 Score=26.80 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcC
Q psy10738 322 ACWSLGNAHAARGNHEKALYFATKHLEISKQLG 354 (609)
Q Consensus 322 ~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~ 354 (609)
+++..|..+...+++-+|+..++.|....++..
T Consensus 257 A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~~a~ 289 (346)
T cd09240 257 AEYHQSLVAKAQKKFGEEIARLQHALELIKTAQ 289 (346)
T ss_pred HHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Confidence 445555555666777777777777766665543
No 475
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=37.65 E-value=1.8e+02 Score=22.00 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQA 51 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~ 51 (609)
+..++.+|..+-..|++++|+.+|..+++.
T Consensus 8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 8 AKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345666788888899999999999999874
No 476
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=36.99 E-value=2.8e+02 Score=24.06 Aligned_cols=55 Identities=18% Similarity=0.191 Sum_probs=36.3
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 31 RLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTL 89 (609)
Q Consensus 31 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 89 (609)
.+..+|.-++-...+....+....+ +.++..+|.+|...|+..+|-+.+.+|-+.
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~~~~----p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNEEIN----PEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH-----S-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHhhccCCC----HHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4556677666666666666433333 458899999999999999999998888664
No 477
>KOG0546|consensus
Probab=36.81 E-value=34 Score=34.44 Aligned_cols=97 Identities=18% Similarity=0.162 Sum_probs=75.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCC---c-------c-----hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGT---D-------D-----LRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM 93 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~---~-------~-----~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 93 (609)
|...++.++|+.|..-|.+++.... . + ......++..++.+-...+.+..|+.....++..
T Consensus 229 ~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~---- 304 (372)
T KOG0546|consen 229 GNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD---- 304 (372)
T ss_pred chhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc----
Confidence 6778999999999999999886421 1 1 1122345566778888888888888877776663
Q ss_pred CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 94 EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 94 ~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
......+++..+..+....++++|++.++.+....+
T Consensus 305 --~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p 340 (372)
T KOG0546|consen 305 --ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAP 340 (372)
T ss_pred --ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCc
Confidence 677889999999999999999999999998877655
No 478
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=36.30 E-value=7.3e+02 Score=28.63 Aligned_cols=172 Identities=14% Similarity=0.100 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHhCC
Q psy10738 178 EAIKYYEQNLALMKEIND-TAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE-FGDKAAERRANSNLGNSHIFLGE 255 (609)
Q Consensus 178 ~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~ 255 (609)
+-.++..+.+........ .....+.+..-|.+.-..|--+-|.+++.+|+.++++ ..+......+...+...+.....
T Consensus 569 kifkfi~~~i~~L~~~~~~~~lalkL~Lq~A~~AD~~~~e~iaYEFf~QAf~iYEE~IsDSk~Q~~aL~~ii~tL~~~r~ 648 (762)
T PF03635_consen 569 KIFKFIHQCISALYQIHPSSELALKLYLQAAIVADQCGLEEIAYEFFSQAFTIYEEEISDSKAQFQALTLIIGTLQKTRS 648 (762)
T ss_dssp HHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHhccCchhhhHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcC
Confidence 333444455555444443 3344556666677777777656688999999999985 56666666666666666654443
Q ss_pred HH-HHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHHHHHHhcchhhHHHHH
Q psy10738 256 YQ-AAS-EHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR----------DYPTAIDYHLRHLIIAQQLMDRVGEGRAC 323 (609)
Q Consensus 256 ~~-~A~-~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 323 (609)
+. +-. ....++.....+.-.......+.+.-+.+++..+ +-+..++++++|++++...-+.......+
T Consensus 649 ~~~Enyd~L~tk~t~yasKLLKK~DQCRaV~~CSHLfW~~~~~~~~~~~~rd~krVlECLQKaLriAds~md~~~~~~Lf 728 (762)
T PF03635_consen 649 FSEENYDTLITKCTLYASKLLKKPDQCRAVYLCSHLFWSTEISEETGSFYRDGKRVLECLQKALRIADSCMDPSQSVQLF 728 (762)
T ss_dssp --HHHHHHHHHHHHHHHHC-SSHHHHHHHHHHCHHHHHT-B-TTTTT-B---HHHHHHHHHHHHHHHHCSSSHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCCccccccccChHHHHHHHHHHHHHHHHHhCcchhHHHH
Confidence 32 111 1222333333333344455666666666666443 67788999999999999877644444443
Q ss_pred HH---HHHHHHHcCChHHHHHHHHHHHHH
Q psy10738 324 WS---LGNAHAARGNHEKALYFATKHLEI 349 (609)
Q Consensus 324 ~~---La~~~~~~g~~~~A~~~~~~al~l 349 (609)
.. ....|...|+..-...+....+++
T Consensus 729 veILn~ylyf~~~~~~~vt~~~in~LIel 757 (762)
T PF03635_consen 729 VEILNRYLYFFEKGNEEVTVKYINGLIEL 757 (762)
T ss_dssp HHHHHHHHHHHTTT-TTS-HCHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCccCHHHHHHHHHH
Confidence 32 233444555544444444444444
No 479
>KOG2034|consensus
Probab=36.05 E-value=7.4e+02 Score=28.64 Aligned_cols=53 Identities=11% Similarity=0.199 Sum_probs=40.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 30 ERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTL 89 (609)
Q Consensus 30 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 89 (609)
..|...|+|++|.++... .|+.+-.++...|..++..++|..|.++|-+.+.-
T Consensus 366 k~yLd~g~y~kAL~~ar~-------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~ 418 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIART-------RPDALETVLLKQADFLFQDKEYLRAAEIYAETLSS 418 (911)
T ss_pred HHHHhcchHHHHHHhccC-------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhh
Confidence 457788888888776544 35556678899999999999999999988777554
No 480
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=35.95 E-value=3.1e+02 Score=24.31 Aligned_cols=69 Identities=13% Similarity=-0.050 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--hcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy10738 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ--LMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLE 348 (609)
Q Consensus 280 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 348 (609)
.......++-..+.|+...|.+.++-+-.-..- ..-+..........+..+...|++.+|...+..+++
T Consensus 75 ~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 75 KKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 445666778888999999998877653211000 011344555667788889999999999999888875
No 481
>KOG0546|consensus
Probab=35.87 E-value=34 Score=34.47 Aligned_cols=104 Identities=18% Similarity=0.228 Sum_probs=72.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--------C-----hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 203 CGNLGNTYYLLGNFKQAIYYHQERLKIAREFG--------D-----KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 269 (609)
Q Consensus 203 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--------~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 269 (609)
.-+.|...+..++++.|..-|.+++....... + .......+.+++.+-+..+.+..|+.....++..
T Consensus 225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~ 304 (372)
T KOG0546|consen 225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD 304 (372)
T ss_pred hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc
Confidence 34466777888999999998888887665211 0 1112335566778888888888887776666552
Q ss_pred HHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 270 AQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 270 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 312 (609)
......+++..+..+....++++|++.+..+....+.
T Consensus 305 ------~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~ 341 (372)
T KOG0546|consen 305 ------ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPN 341 (372)
T ss_pred ------ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcc
Confidence 2234668888899999999999999998888766544
No 482
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=35.82 E-value=3.2e+02 Score=27.86 Aligned_cols=91 Identities=16% Similarity=0.224 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHcccccccCCCCC------CCCCchHhHHhHHHHHHHHHHHHHHHHHh-----------CChHHHH
Q psy10738 138 SEGRALYNLGNVYHAKGKAIGKVGQQD------PGEYPEEVKVCLQEAIKYYEQNLALMKEI-----------NDTAAQG 200 (609)
Q Consensus 138 ~~~~~~~~lg~~~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~A~~~~~~al~~~~~~-----------~~~~~~~ 200 (609)
..+.++...|..|+.+-+..+...... ...-.....+.|+..+..++.|+..+... .......
T Consensus 97 ~~aeA~~lRA~~y~~L~~~fG~vP~~~~~~~~~~~~~~~s~~evy~~i~~dL~~A~~~L~~~~~~~~~~~~~~~~r~~k~ 176 (359)
T cd08977 97 YKGEAKFIRALAYFYLTRLFGGVPLSTAADQGTETPPRDSQEEVYTQILADLDEAIALLPEASSAQDFYIYFGDGRAWKK 176 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceecCcCccccCCCCCCHHHHHHHHHHHHHHHHHhccccccccccccccCcchhhHH
Confidence 445566666666666554332111111 00112234556777777777777765432 1234556
Q ss_pred HHHHHHHHHHHHcC-----CHHHHHHHHHHHHH
Q psy10738 201 RACGNLGNTYYLLG-----NFKQAIYYHQERLK 228 (609)
Q Consensus 201 ~~~~~lg~~~~~~g-----~~~~A~~~~~~al~ 228 (609)
.++..++.+|+..+ ++++|+.+.++++.
T Consensus 177 aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~ 209 (359)
T cd08977 177 AARALLARVYLYLANYTAADYAEALTAAEKSFK 209 (359)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 78888899999988 78888888887765
No 483
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=35.76 E-value=1.1e+02 Score=25.89 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDD 55 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~ 55 (609)
+...+..|+.+...|++++|..+|-+|+...|.-
T Consensus 63 Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 63 FLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 4455566999999999999999999999998764
No 484
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=35.66 E-value=36 Score=24.51 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=17.1
Q ss_pred CCCchHHHHHHHhhhcchhhhcc
Q psy10738 534 IPDDGFLDMLIRCQGARLEDQRS 556 (609)
Q Consensus 534 ~~~~~~~~~~~~~q~~r~~~qr~ 556 (609)
..+|+||+.|+-.+.+.=|+|=.
T Consensus 8 ~~pD~fY~~Li~aH~gLs~e~S~ 30 (60)
T PF10932_consen 8 ADPDDFYEALIEAHRGLSDEQSA 30 (60)
T ss_pred CChhHHHHHHHHHHhCCCHHHHH
Confidence 35688888888888777777643
No 485
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=35.57 E-value=94 Score=18.17 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=18.2
Q ss_pred CChHHHHHHHHHHHHhCCcchh
Q psy10738 36 GDCRAGVAFFQAAIQAGTDDLR 57 (609)
Q Consensus 36 g~~~~A~~~~~~al~~~~~~~~ 57 (609)
|+.+.|...|++++...|.+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~ 22 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVE 22 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChH
Confidence 5778899999999998886644
No 486
>PF13041 PPR_2: PPR repeat family
Probab=35.33 E-value=87 Score=21.24 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10738 202 ACGNLGNTYYLLGNFKQAIYYHQERLK 228 (609)
Q Consensus 202 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 228 (609)
+|+.+-..|.+.|++++|.+.|++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 556666667777777777777776553
No 487
>PF13041 PPR_2: PPR repeat family
Probab=34.69 E-value=89 Score=21.18 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy10738 242 ANSNLGNSHIFLGEYQAASEHYKRTLV 268 (609)
Q Consensus 242 ~~~~la~~~~~~g~~~~A~~~~~~al~ 268 (609)
.|..+-..|.+.|++++|.+.|++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 566677777788888888887776653
No 488
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=34.30 E-value=1.3e+02 Score=26.20 Aligned_cols=46 Identities=17% Similarity=0.168 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhC
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLG 74 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g 74 (609)
++..+...+..|+|.-|..+...++..+|++.. +....+.++..+|
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~----ar~l~A~al~~lg 118 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLVFADPDNEE----ARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHH----HHHHHHHHHHHHH
Confidence 344578889999999999999999999998754 4444555555444
No 489
>KOG2063|consensus
Probab=34.14 E-value=8.2e+02 Score=28.58 Aligned_cols=28 Identities=18% Similarity=0.005 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy10738 241 RANSNLGNSHIFLGEYQAASEHYKRTLV 268 (609)
Q Consensus 241 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 268 (609)
..|...+.++.++|+.++|+..|-..+.
T Consensus 685 ~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 685 ELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 3566677777778888888777755443
No 490
>KOG4563|consensus
Probab=34.00 E-value=1.4e+02 Score=30.46 Aligned_cols=62 Identities=15% Similarity=0.108 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC----cchhHHHHHHHHHHHHHHHhCCHHHHH
Q psy10738 19 GNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGT----DDLRTLSAIYSQLGNAYFYLGDYQKAM 80 (609)
Q Consensus 19 a~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~a~~~~~lg~~~~~~g~~~~A~ 80 (609)
....-.++..|..++..+++++|...|..|..+.. ........+++..|..++..+++....
T Consensus 38 ~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 38 EKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456777889999999999999999999987643 222334556677777777766655544
No 491
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=33.94 E-value=5e+02 Score=26.02 Aligned_cols=76 Identities=13% Similarity=-0.019 Sum_probs=56.2
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHH
Q psy10738 287 GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMN 365 (609)
Q Consensus 287 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~ 365 (609)
+......|..+.|+..++..+.-. ..........+.+++++...|.++-|..+|....+..+..+-..++......
T Consensus 220 A~~l~~~~gl~~Al~~L~~~~~~~---~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~~~~~L~~WEP~L~~~ 295 (301)
T TIGR03362 220 ARALAAEGGLEAALQRLQQRLAQA---REPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQIQQLGLAEWEPALALR 295 (301)
T ss_pred HHHHHHcCCHHHHHHHHHhhcccC---CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCccccChHHHHH
Confidence 556677788888888887654322 3344455566778999999999999999999999998888766665554433
No 492
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=33.58 E-value=5.4e+02 Score=26.38 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHccc
Q psy10738 138 SEGRALYNLGNVYHAKGK 155 (609)
Q Consensus 138 ~~~~~~~~lg~~~~~~g~ 155 (609)
..+.+++|+|.+|...|-
T Consensus 109 Eka~vlfNiaal~s~~a~ 126 (353)
T cd09246 109 EKAAVLFNLGALSSQLGL 126 (353)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456788888888888775
No 493
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=33.29 E-value=1.3e+02 Score=22.81 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=20.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
..|..+-..|++++|+.+|.++++...
T Consensus 13 ~~Av~~d~~g~~~eAl~~Y~~a~e~l~ 39 (77)
T smart00745 13 SKALKADEAGDYEEALELYKKAIEYLL 39 (77)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 334445567999999999999988765
No 494
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=33.19 E-value=5.5e+02 Score=26.35 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=36.3
Q ss_pred CChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 36 GDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQ 85 (609)
Q Consensus 36 g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 85 (609)
+..-+|+.+++.++...|.+.. +...+..+|..+|-...|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~----~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQ----LKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3456788888888888888755 567788888889999998888854
No 495
>KOG0276|consensus
Probab=32.90 E-value=1.2e+02 Score=32.95 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy10738 283 CYSLGNTYTLLRDYPTAIDYHLRHLI 308 (609)
Q Consensus 283 ~~~la~~~~~~g~~~~A~~~~~~al~ 308 (609)
|..||.+....|++..|.+++.++..
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcc
Confidence 45566666666666666666666543
No 496
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=32.05 E-value=1.1e+02 Score=18.19 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLT 88 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 88 (609)
.|..+-.++...|+++.|...+....+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455666677777777777777766543
No 497
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=31.25 E-value=5.3e+02 Score=25.50 Aligned_cols=130 Identities=8% Similarity=-0.015 Sum_probs=75.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhC---C---hH-HHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHH
Q psy10738 209 TYYLLGNFKQAIYYHQERLKIAREFG---D---KA-AERRANSNLG-NSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA 280 (609)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~~~~~---~---~~-~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 280 (609)
...-..+|..|++.++++++...... + .. ..-..+..+| .++..++++.++..+..+-.+.-++.. +
T Consensus 44 ~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP-----p 118 (309)
T PF07163_consen 44 LLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP-----P 118 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC-----H
Confidence 34445688899999999988773321 1 11 1111233333 467788999998877765554443331 2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHH
Q psy10738 281 QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFA 343 (609)
Q Consensus 281 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~ 343 (609)
.++..---.|.+.|++....+.-..-+..-.+-+-+....-+-..+-.++.=+|.+++|.++.
T Consensus 119 kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 119 KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 222222346888999888777666555432221222222333344555666689999998886
No 498
>KOG1938|consensus
Probab=31.20 E-value=2.9e+02 Score=32.04 Aligned_cols=60 Identities=10% Similarity=0.072 Sum_probs=33.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy10738 247 GNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 307 (609)
Q Consensus 247 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 307 (609)
|..+...|....|...|..++..++...-.......++.++..|...+. +.|-..+.+.+
T Consensus 323 l~r~s~anqp~ha~R~y~~ai~v~~~~~ws~~edh~~f~i~~~y~l~~~-D~a~~~f~~~i 382 (960)
T KOG1938|consen 323 LIRFSSANQPKHALRCYRQAIPVLKKPTWSFAEDHLYFTILHVYLLCQE-DDADEEFSKLI 382 (960)
T ss_pred hhhcccCCChhHHHHHHHHHhhhcCCCCcchhHHhHHHhHHHhhhhhcc-hhHHHHHHHHH
Confidence 3344455667778888888887776654444445566666665544333 33333344333
No 499
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=31.20 E-value=2.4e+02 Score=21.50 Aligned_cols=30 Identities=20% Similarity=0.404 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQA 51 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~ 51 (609)
+..++.+|...-..|+|++|+.+|..+++.
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 356777788888999999999999999874
No 500
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=30.92 E-value=89 Score=19.07 Aligned_cols=13 Identities=23% Similarity=0.422 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHHH
Q psy10738 295 DYPTAIDYHLRHL 307 (609)
Q Consensus 295 ~~~~A~~~~~~al 307 (609)
+..+|..+++++.
T Consensus 20 d~~~A~~~~~~Aa 32 (36)
T smart00671 20 DLEKALEYYKKAA 32 (36)
T ss_pred CHHHHHHHHHHHH
Confidence 5555555555543
Done!