RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10738
(609 letters)
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 405 bits (1043), Expect = e-137
Identities = 263/410 (64%), Positives = 333/410 (81%), Gaps = 5/410 (1%)
Query: 14 GGADGGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYL 73
G CLELALEGERLCK+GDCRAGV+FF+AA+Q GT+DL+TLSAIYSQLGNAYFYL
Sbjct: 1 GPGSMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYL 60
Query: 74 GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL 133
DY KA++YH DLTLAR + D+LGEAK+SGNLGNTLKV+G +DEA+VCC+RHL+ISR+L
Sbjct: 61 HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 120
Query: 134 NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI 193
NDK+ E RALYNLGNVYHAKGK+ G G QD GE+PEEV+ LQ A+ +YE+NL+L+ +
Sbjct: 121 NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL 180
Query: 194 NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL 253
D AAQGRA GNLGNT+YLLGNF+ A+ H++RL IA+EFGDKAAERRA SNLGN++IFL
Sbjct: 181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL 240
Query: 254 GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 313
GE++ ASE+YK+TL+LA+ L DRAVEAQ+CYSLGNTYTLL+DY AIDYHL+HL IAQ+L
Sbjct: 241 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300
Query: 314 MDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKAL 373
DR+GEGRACWSLGNA+ A GNH++A++FA KHLEIS+++GD G++TA++N++DL+ L
Sbjct: 301 NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVL 360
Query: 374 GMSTNDLSPDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLDLIKLTPE 423
G+S + + + ++ R RR SME ++L+KLTPE
Sbjct: 361 GLSYSTNN-SIMSENTEIDSSLN----GVRPKLGRRHSMENMELMKLTPE 405
Score = 211 bits (538), Expect = 2e-62
Identities = 83/326 (25%), Positives = 150/326 (46%), Gaps = 43/326 (13%)
Query: 36 GDCRAGVAFFQAA--IQAGTDDLRTLSAIYSQLGNAYFYLGD------------------ 75
G+ + Q I +D + LGN Y G
Sbjct: 101 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR 160
Query: 76 --YQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL 133
Q A+ +++++L+L + D+ + ++ GNLGNT ++G + +A++ ++ L I+++
Sbjct: 161 DALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220
Query: 134 NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI 193
DK +E RA NLGN Y G+ + A +YY++ L L +++
Sbjct: 221 GDKAAERRAYSNLGNAYIFLGE--------------------FETASEYYKKTLLLARQL 260
Query: 194 NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL 253
D A + ++C +LGNTY LL ++++AI YH + L IA+E D+ E RA +LGN++ L
Sbjct: 261 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL 320
Query: 254 GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL-RDYPTAIDYHLRHLIIAQQ 312
G + A ++ L +++++GD++ E A +L + +L Y T + I
Sbjct: 321 GNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSS 380
Query: 313 LMDRVGEGRACWSLGNAHAARGNHEK 338
L + S+ N + EK
Sbjct: 381 LNGVRPKLGRRHSMENMELMKLTPEK 406
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 380 bits (977), Expect = e-127
Identities = 245/334 (73%), Positives = 296/334 (88%), Gaps = 3/334 (0%)
Query: 17 DGGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDY 76
G +MCLELALEGERLC AGDCRAGVAFFQAAIQAGT+DLRTLSAIYSQLGNAYFYLGDY
Sbjct: 43 GGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDY 102
Query: 77 QKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDK 136
KAMQYHK DLTLA++M D+LGEAKSSGNLGNTLKVMG++DEA +CC+RHL ++RQL D+
Sbjct: 103 NKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR 162
Query: 137 LSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDT 196
LSEGRALYNLGNVYHAKGK +GQ++PG++ ++VK L A+++Y++NL LM+++ D
Sbjct: 163 LSEGRALYNLGNVYHAKGK---HLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR 219
Query: 197 AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEY 256
AQGRACGNLGNTYYLLG+F+ AI +HQERL+IAREFGD+AAERRANSNLGNSHIFLG++
Sbjct: 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQF 279
Query: 257 QAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR 316
+ A+EHYKRTL LA +LG+R VEAQ+CYSLGNTYTLL ++ TAI+YH RHL IAQ+L DR
Sbjct: 280 EDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339
Query: 317 VGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350
+GE RACWSLGNAH+A G HE+AL +A +HL+++
Sbjct: 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373
Score = 243 bits (623), Expect = 9e-75
Identities = 85/328 (25%), Positives = 138/328 (42%), Gaps = 41/328 (12%)
Query: 55 DLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG 114
+ +LSA + + LG H + + G L G
Sbjct: 5 SMSSLSASAENVSS--LGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAG 62
Query: 115 KYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKV 174
+ + ++ + D + LGN Y G
Sbjct: 63 DCRAGVAFFQAAIQAGTE--DLRTLSAIYSQLGNAYFYLGD------------------- 101
Query: 175 CLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFG 234
+A++Y++ +L L K +ND + ++ GNLGNT ++G F +A + L +AR+ G
Sbjct: 102 -YNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG 160
Query: 235 DKAAERRANSNLGNSHIFLGEYQA-----------------ASEHYKRTLVLAQDLGDRA 277
D+ +E RA NLGN + G++ A E Y+ L L +DLGDR
Sbjct: 161 DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRG 220
Query: 278 VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHE 337
+ +AC +LGNTY LL D+ AI++H L IA++ DR E RA +LGN+H G E
Sbjct: 221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFE 280
Query: 338 KALYFATKHLEISKQLGDPLGQVTAQMN 365
A + L ++ +LG+ + + +
Sbjct: 281 DAAEHYKRTLALAVELGEREVEAQSCYS 308
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 370 bits (953), Expect = e-125
Identities = 241/338 (71%), Positives = 295/338 (87%)
Query: 18 GGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQ 77
G CLELALEGERLCK+GDCRAGV+FF+AA+Q GT+DL+TLSAIYSQLGNAYFYL DY
Sbjct: 1 GSASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYA 60
Query: 78 KAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKL 137
KA++YH DLTLAR + D+LGEAK+SGNLGNTLKV+G +DEA+VCC+RHL+ISR+LNDK+
Sbjct: 61 KALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV 120
Query: 138 SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTA 197
E RALYNLGNVYHAKGK+ G G QD GE+PE+V+ LQ A+ YE+NL+L+ + D A
Sbjct: 121 GEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRA 180
Query: 198 AQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQ 257
AQGRA GNLGNT+YLLGNF+ A+ H++RL IA+EFGDKAAERRA SNLGN++IFLGE++
Sbjct: 181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 240
Query: 258 AASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRV 317
ASE+YK+TL+LA+ L DRAVEAQ+CYSLGNTYTLL+DY AIDYHL+HL IAQ+L DR+
Sbjct: 241 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 300
Query: 318 GEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGD 355
GEGRACWSLGNA+ A GNH++A++FA KHLEIS+++GD
Sbjct: 301 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 338
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 201 bits (512), Expect = 6e-59
Identities = 41/292 (14%), Positives = 101/292 (34%), Gaps = 26/292 (8%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
G +Y A+++ K+ + ++D++ +A+ + + M + +M
Sbjct: 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDY 165
Query: 123 CKRHLEISRQLND-KLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181
++ EI ++ + + + + ++AI
Sbjct: 166 ARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQ--------------------YEDAIS 205
Query: 182 YYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERR 241
++++ ++ + GR N+G ++ AI Y + + + E + +
Sbjct: 206 HFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265
Query: 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 301
A + H LG+ A E++ + + +Q GD ++ + L + Y D AI
Sbjct: 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF-LKSLYLSGPDE-EAIQ 323
Query: 302 YHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQL 353
L D + + R N +KA + K ++ + +
Sbjct: 324 GFFDFLESKMLYADL---EDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLI 372
Score = 184 bits (468), Expect = 1e-52
Identities = 49/310 (15%), Positives = 115/310 (37%), Gaps = 16/310 (5%)
Query: 60 SAIYSQLGNAYFYL--GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYD 117
S+I ++ Y Y+ A ++ ME+ + +M +Y
Sbjct: 10 SSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYL 69
Query: 118 EAM--VCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVC 175
E + + + +S L + + L L Y + + + D EY
Sbjct: 70 EPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMY---ELDQREY------- 119
Query: 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD 235
AIK++++ + + + D + + +YY + ++ Y ++ +I +E
Sbjct: 120 -LSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178
Query: 236 KAAER-RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR 294
+ +S + + L +Y+ A H+++ +A+ + + Y++G
Sbjct: 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS 238
Query: 295 DYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLG 354
Y AI Y R + + ++ +A + + H G +KA + +K + S++ G
Sbjct: 239 QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG 298
Query: 355 DPLGQVTAQM 364
D + +
Sbjct: 299 DVIYLSEFEF 308
Score = 171 bits (435), Expect = 5e-48
Identities = 42/273 (15%), Positives = 98/273 (35%), Gaps = 28/273 (10%)
Query: 44 FFQAA--IQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMED-KLGEA 100
FF+ A D + + ++ +Y+Y+ +M Y +Q + + E +
Sbjct: 125 FFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184
Query: 101 KSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKV 160
+ + +Y++A+ ++ ++ GR LYN+G +++ +
Sbjct: 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ----- 239
Query: 161 GQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAI 220
++AI Y+++ +A+ +E N + +A + +Y LG +A
Sbjct: 240 ---------------YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAH 284
Query: 221 YYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA 280
YH + + +++ GD L + L E + + A
Sbjct: 285 EYHSKGMAYSQKAGDVIYLSEFE-FLKS----LYLSGPDEEAIQGFFDFLESKMLYADLE 339
Query: 281 QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 313
+ Y +++ A Y L+ + Q +
Sbjct: 340 DFAIDVAKYYHERKNFQKASAYFLKVEQVRQLI 372
Score = 111 bits (280), Expect = 7e-27
Identities = 23/186 (12%), Positives = 57/186 (30%), Gaps = 25/186 (13%)
Query: 53 TDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKV 112
+ + +G Y+ A+ Y K+ + + ++ +
Sbjct: 217 EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK 276
Query: 113 MGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEV 172
+GK D+A + + S++ D + L ++Y +
Sbjct: 277 LGKIDKAHEYHSKGMAYSQKAGDVIYLSE-FEFLKSLYLSGPD----------------- 318
Query: 173 KVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE 232
+EAI+ + L D ++ Y+ NF++A Y + ++ +
Sbjct: 319 ----EEAIQGFFDFLESKMLYADLE---DFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371
Query: 233 FGDKAA 238
+
Sbjct: 372 IQGGVS 377
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 191 bits (487), Expect = 4e-58
Identities = 115/161 (71%), Positives = 142/161 (88%)
Query: 195 DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG 254
AAQGRA GNLGNT+YLLGNF+ A+ H++RL IA+EFGDKAAER A SNLGN++IFLG
Sbjct: 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLG 63
Query: 255 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM 314
E++ ASE+YK+TL+LA+ L DRAVEAQ+CYSLGNTYTLL+DY AIDYHL+HL IAQ+L
Sbjct: 64 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 123
Query: 315 DRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGD 355
DR+GEGRACWSLGNA+ A GNH++A++FA KHLEIS+++GD
Sbjct: 124 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 164
Score = 173 bits (442), Expect = 2e-51
Identities = 58/184 (31%), Positives = 97/184 (52%), Gaps = 20/184 (10%)
Query: 52 GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLK 111
G + LGN ++ LG+++ A+ H+Q L +A+ DK E + NLGN
Sbjct: 1 GPGSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYI 60
Query: 112 VMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEE 171
+G+++ A K+ L ++RQL D+ E ++ Y+LGN Y
Sbjct: 61 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD---------------- 104
Query: 172 VKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAR 231
++AI Y+ ++LA+ +E+ D +GRAC +LGN Y LGN QA+++ ++ L+I+R
Sbjct: 105 ----YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160
Query: 232 EFGD 235
E GD
Sbjct: 161 EVGD 164
Score = 129 bits (328), Expect = 2e-35
Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 22/162 (13%)
Query: 36 GDCRAGVAFFQAA--IQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM 93
G+ R V + I D YS LGNAY +LG+++ A +Y+K+ L LAR +
Sbjct: 23 GNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82
Query: 94 EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAK 153
+D+ EA+S +LGNT ++ Y++A+ +HL I+++L D++ EGRA ++LGN Y A
Sbjct: 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 142
Query: 154 GKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIND 195
G +A+ + E++L + +E+ D
Sbjct: 143 GN--------------------HDQAMHFAEKHLEISREVGD 164
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 191 bits (488), Expect = 1e-57
Identities = 42/198 (21%), Positives = 65/198 (32%), Gaps = 1/198 (0%)
Query: 178 EAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKA 237
EA Y + A A LG Y + F +A Q + A++ GD
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63
Query: 238 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV-EAQACYSLGNTYTLLRDY 296
AE RA +G G + AA + L L + + + Y + D
Sbjct: 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL 123
Query: 297 PTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDP 356
A + + L+ AQQ D+V A LG+ N +A + +I +L D
Sbjct: 124 AGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDS 183
Query: 357 LGQVTAQMNVTDLRKALG 374
+ L
Sbjct: 184 EAVNELMTRLNGLEHHHH 201
Score = 189 bits (481), Expect = 1e-56
Identities = 35/220 (15%), Positives = 70/220 (31%), Gaps = 21/220 (9%)
Query: 78 KAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKL 137
+A Y + + + + LG M ++DEA + + +++ D
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63
Query: 138 SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI-NDT 196
+E RAL+ +G V G A + + + L+ + D
Sbjct: 64 AEHRALHQVGMVERMAGN--------------------WDAARRCFLEERELLASLPEDP 103
Query: 197 AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEY 256
A + G+ A +++ L A++ D+ A A LG+
Sbjct: 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163
Query: 257 QAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY 296
A +H+ R + +L D + L +
Sbjct: 164 LEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHHH 203
Score = 175 bits (445), Expect = 2e-51
Identities = 41/220 (18%), Positives = 70/220 (31%), Gaps = 21/220 (9%)
Query: 118 EAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQ 177
EA + L + A + LG VY +
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDR--------------------FD 43
Query: 178 EAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKA 237
EA ++ ++ D A+ RA +G + GN+ A E ++ +
Sbjct: 44 EARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103
Query: 238 AERRAN-SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY 296
AN + + G+ A + Y+++LV AQ D+ A A LG+ ++
Sbjct: 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163
Query: 297 PTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNH 336
A + LR I +L D L +H
Sbjct: 164 LEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHHH 203
Score = 169 bits (431), Expect = 2e-49
Identities = 41/216 (18%), Positives = 68/216 (31%), Gaps = 23/216 (10%)
Query: 44 FFQAA--IQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101
+ A QA T S LG Y ++ + +A + A+ D E +
Sbjct: 8 YALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHR 67
Query: 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL-NDKLSEGRALYNLGNVYHAKGKAIGKV 160
+ +G ++ G +D A C E+ L D L+ Y + V G
Sbjct: 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD----- 122
Query: 161 GQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAI 220
L A + YE++L ++ +D A A LG+ N +A
Sbjct: 123 ---------------LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQ 167
Query: 221 YYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEY 256
+ I E D A + L +
Sbjct: 168 QHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHHH 203
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 170 bits (433), Expect = 1e-47
Identities = 40/294 (13%), Positives = 93/294 (31%), Gaps = 31/294 (10%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
G F +Y +A+ Y+++ + D + +A+ + M + +M
Sbjct: 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYH 163
Query: 123 CKRHLEI-SRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181
+ L+I + ++L+ + Y +A+
Sbjct: 164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKH--------------------YDKALP 203
Query: 182 YYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERR 241
+ E L L +I + + N+ N+Y G+ + A+ + Q+ K++RE +
Sbjct: 204 HLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPK 262
Query: 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA--QACYSLGNTYTLLRDYPTA 299
L + G+ Q A + + L + + ++ R
Sbjct: 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL 322
Query: 300 IDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQL 353
+ Y ++ S + + E+A F K L+ + +
Sbjct: 323 LSYF-------EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369
Score = 161 bits (410), Expect = 2e-44
Identities = 42/291 (14%), Positives = 95/291 (32%), Gaps = 13/291 (4%)
Query: 74 GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL 133
A + + ME+ + ++M Y E ++ L
Sbjct: 26 FSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85
Query: 134 NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI 193
+ + L L Y + + + Q EY EAI YY + + +
Sbjct: 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQ---KEY--------VEAIGYYREAEKELPFV 134
Query: 194 NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE-FGDKAAERRANSNLGNSHIF 252
+D + + YY + ++Y+ + L I + ++ + ++
Sbjct: 135 SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD 194
Query: 253 LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312
Y A H + L LA D+ + A + ++ N+Y D A+++ + ++++
Sbjct: 195 FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254
Query: 313 LMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQ 363
+ + + + L G +KA F + L+ +
Sbjct: 255 KVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFL 304
Score = 104 bits (262), Expect = 1e-24
Identities = 21/200 (10%), Positives = 68/200 (34%), Gaps = 10/200 (5%)
Query: 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFG- 234
+ +A + ++++ + + + L+ ++ + + R +
Sbjct: 28 VPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87
Query: 235 --------DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 286
+ + G EY A +Y+ + D +A+ + +
Sbjct: 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKV 147
Query: 287 GNTYTLLRDYPTAIDYHLRHLIIAQ-QLMDRVGEGRACWSLGNAHAARGNHEKALYFATK 345
Y ++ ++ + L+ L I Q + + ++ + + + +++KAL
Sbjct: 148 AEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEA 207
Query: 346 HLEISKQLGDPLGQVTAQMN 365
LE++ + + + +N
Sbjct: 208 ALELAMDIQNDRFIAISLLN 227
Score = 101 bits (254), Expect = 2e-23
Identities = 28/186 (15%), Positives = 62/186 (33%), Gaps = 30/186 (16%)
Query: 53 TDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKV 112
+ R ++ + N+Y GD Q A+++ ++ ++R L K L TL
Sbjct: 215 IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCK 273
Query: 113 MGKYDEAMVCCKRHLEISRQLNDKLSEGRA--LYNLGNVYHAKGKAIGKVGQQDPGEYPE 170
G+ +A + L+ + K + L + + K
Sbjct: 274 AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK--------------- 318
Query: 171 EVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIA 230
+ + + Y+E + N A + + +F+QA ++++ LK
Sbjct: 319 -----IHDLLSYFE-------KKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366
Query: 231 REFGDK 236
+
Sbjct: 367 EDILKG 372
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 133 bits (338), Expect = 4e-35
Identities = 59/321 (18%), Positives = 97/321 (30%), Gaps = 50/321 (15%)
Query: 52 GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGE-----AKSSGNL 106
G + L L Y G Y+ A+ KQ L +E G A L
Sbjct: 20 GYEIPARLRT-LHNLVIQYASQGRYEVAVPLCKQALED---LEKTSGHDHPDVATMLNIL 75
Query: 107 GNTLKVMGKYDEAMVCCKRHLEISRQL--NDKLSEGRALYNLGNVYHAKGKAIGKVGQQD 164
+ KY +A L I + D + L NL +Y +GK
Sbjct: 76 ALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK--------- 126
Query: 165 PGEYPEEVKVCLQEAIKYYEQNLALMKEIN-----DTAAQGRACGNLGNTYYLLGNFKQA 219
+EA ++ L + +++ D A NL G +++
Sbjct: 127 -----------YKEAEPLCKRALEIREKVLGKDHPDVAK---QLNNLALLCQNQGKYEEV 172
Query: 220 IYYHQERLKIARE-FGDK----AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD-- 272
YY+Q L+I + G A + +NL + ++ G+++ A YK L A +
Sbjct: 173 EYYYQRALEIYQTKLGPDDPNVA---KTKNNLASCYLKQGKFKQAETLYKEILTRAHERE 229
Query: 273 LGDRAVE-AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHA 331
G E + +D +LG +
Sbjct: 230 FGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYR 289
Query: 332 ARGNHEKALYFATKHLEISKQ 352
+G E A + KQ
Sbjct: 290 RQGKFEAAETLEEAAMRSRKQ 310
Score = 124 bits (313), Expect = 1e-31
Identities = 60/304 (19%), Positives = 94/304 (30%), Gaps = 47/304 (15%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQA-----GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYH 83
+ G V + A++ G D + + L Y Y+ A
Sbjct: 34 VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATM-LNILALVYRDQNKYKDAANLL 92
Query: 84 KQDLTLARNMEDKLGE-----AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL--NDK 136
L + E LG+ A + NL GKY EA CKR LEI ++ D
Sbjct: 93 NDALAI---REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH 149
Query: 137 LSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIN-- 194
+ L NL + +GK +E YY++ L + +
Sbjct: 150 PDVAKQLNNLALLCQNQGK--------------------YEEVEYYYQRALEIYQTKLGP 189
Query: 195 ---DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE--FGDKAAER-RANSNLGN 248
+ A + NL + Y G FKQA ++E L A E FG E +
Sbjct: 190 DDPNVA---KTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEE 246
Query: 249 SHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 308
G+ + + + D +LG Y + A +
Sbjct: 247 REECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306
Query: 309 IAQQ 312
+Q
Sbjct: 307 SRKQ 310
Score = 113 bits (285), Expect = 6e-28
Identities = 54/301 (17%), Positives = 91/301 (30%), Gaps = 54/301 (17%)
Query: 80 MQYHKQDLTLARNM-EDKLGE-----AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL 133
M +H + N+ G ++ NL G+Y+ A+ CK+ LE +
Sbjct: 1 MHHHHHHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT 60
Query: 134 --NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMK 191
+D L L VY + K ++A LA+ +
Sbjct: 61 SGHDHPDVATMLNILALVYRDQNK--------------------YKDAANLLNDALAIRE 100
Query: 192 EIN-----DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE-FGDK----AAERR 241
+ AA NL Y G +K+A + L+I + G A +
Sbjct: 101 KTLGKDHPAVAA---TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL- 156
Query: 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQD-LGDRAVE-AQACYSLGNTYTLLRDYPTA 299
+NL G+Y+ +Y+R L + Q LG A+ +L + Y + A
Sbjct: 157 --NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA 214
Query: 300 IDYHLRHLIIAQQLMDRVGE-----GRACWSLGNAHAARGNHEKALYFATKHLEISKQLG 354
+ L A + G +G + F K
Sbjct: 215 ETLYKEILTRAHE--REFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY-KACK 271
Query: 355 D 355
Sbjct: 272 V 272
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 123 bits (309), Expect = 3e-31
Identities = 32/228 (14%), Positives = 67/228 (29%), Gaps = 23/228 (10%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
Y++ A+ ++A + Q+ N AK+ G LK + + EA+
Sbjct: 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY 98
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
++ + + + AL G + D +A+
Sbjct: 99 IEKASVMYVENGTPDTAAMALDRAGKLME----------PLDL-----------SKAVHL 137
Query: 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRA 242
Y+Q A+ + G F +A Q+ + +E + +
Sbjct: 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197
Query: 243 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY 290
+ +Y AA + + + + G + A L Y
Sbjct: 198 CIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSE--DCAALEDLLQAY 243
Score = 109 bits (273), Expect = 2e-26
Identities = 27/271 (9%), Positives = 69/271 (25%), Gaps = 29/271 (10%)
Query: 74 GDYQKAMQYHKQ-----DLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLE 128
+A ++ + + + D A K + ++A + E
Sbjct: 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAE 64
Query: 129 ISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLA 188
+A G + + + EA++Y E+
Sbjct: 65 AHANNRSLFHAAKAFEQAGMMLKDLQR--------------------MPEAVQYIEKASV 104
Query: 189 LMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGN 248
+ E A G + +A++ +Q+ +
Sbjct: 105 MYVENGTPDTAAMALDRAGK-LMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASR 163
Query: 249 SHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 308
+ ++ A+ ++ + +++ + + C + DY A
Sbjct: 164 LLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYS 223
Query: 309 IAQQLMDRVGEGRACWSLGNAHAARGNHEKA 339
I + A L A+ + E+
Sbjct: 224 IPGFSGSE--DCAALEDLLQAYDE-QDEEQL 251
Score = 100 bits (250), Expect = 2e-23
Identities = 28/246 (11%), Positives = 64/246 (26%), Gaps = 26/246 (10%)
Query: 114 GKYDEAMVCCKR---HLEIS-RQLNDKLSEGRALY-NLGNVYHAKGKAIGKVGQQDPGEY 168
K EA + +L+ S + + Y + +
Sbjct: 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQ------------- 51
Query: 169 PEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLK 228
L++A Y Q +A G L +A+ Y ++
Sbjct: 52 -------LEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASV 104
Query: 229 IAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGN 288
+ E G A G + + A Y++ + ++ A+
Sbjct: 105 MYVENGTPDTAAMALDRAGK-LMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASR 163
Query: 289 TYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLE 348
+ + A + + +++ + + C + R ++ A +
Sbjct: 164 LLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYS 223
Query: 349 ISKQLG 354
I G
Sbjct: 224 IPGFSG 229
Score = 87.6 bits (217), Expect = 4e-19
Identities = 27/213 (12%), Positives = 62/213 (29%), Gaps = 24/213 (11%)
Query: 39 RAGVAFFQAA-IQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKL 97
+A A+ Q A A L + + Q G L +A+QY ++ +
Sbjct: 54 QAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPD 113
Query: 98 GEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAI 157
A + G ++ +A+ ++ + + + + K
Sbjct: 114 TAAMALDRAGKLME-PLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK-- 170
Query: 158 GKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFK 217
EA ++ ++ KE+ + + C ++
Sbjct: 171 ------------------FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYV 212
Query: 218 QAIYYHQERLKIAREFGDKAAERRANSNLGNSH 250
A +E I G + + A +L ++
Sbjct: 213 AAQKCVRESYSIPGFSGSE--DCAALEDLLQAY 243
Score = 87.3 bits (216), Expect = 4e-19
Identities = 25/205 (12%), Positives = 57/205 (27%), Gaps = 3/205 (1%)
Query: 170 EEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKI 229
E + +A KY + + K D+AA + +QA + + +
Sbjct: 8 SEAHEHIAKAEKYLKTSFMKWKPDYDSAAS--EYAKAAVAFKNAKQLEQAKDAYLQEAEA 65
Query: 230 AREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNT 289
+A G L A ++ ++ V+ + G A A G
Sbjct: 66 HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKL 125
Query: 290 YTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
L D A+ + + + + + ++A K +
Sbjct: 126 MEPL-DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184
Query: 350 SKQLGDPLGQVTAQMNVTDLRKALG 374
K++ + + ++
Sbjct: 185 YKEMENYPTCYKKCIAQVLVQLHRA 209
Score = 69.5 bits (170), Expect = 4e-13
Identities = 25/184 (13%), Positives = 49/184 (26%), Gaps = 25/184 (13%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQ--AGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQD 86
G L V + + A T + + G D KA+ ++Q
Sbjct: 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM-EPLDLSKAVHLYQQA 141
Query: 87 LTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNL 146
+ N E A+ G L K+DEA ++ + +++ + + +
Sbjct: 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201
Query: 147 GNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNL 206
V + A K + + + A +L
Sbjct: 202 VLVQLHRAD--------------------YVAAQKCVRE--SYSIPGFSGSEDCAALEDL 239
Query: 207 GNTY 210
Y
Sbjct: 240 LQAY 243
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 120 bits (304), Expect = 8e-31
Identities = 57/306 (18%), Positives = 88/306 (28%), Gaps = 49/306 (16%)
Query: 66 LGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGE-----AKSSGNLGNTLKVMGKYDEAM 120
+ L A+ KQ L +E G A L + KY EA
Sbjct: 7 HHHHSSGLVPRGSAVPLCKQALED---LEKTSGHDHPDVATMLNILALVYRDQNKYKEAA 63
Query: 121 VCCKRHLEISRQL--NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQE 178
L I + D + L NL +Y +GK +E
Sbjct: 64 HLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK--------------------YKE 103
Query: 179 AIKYYEQNLALMKEIN-----DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE- 232
A ++ L + +++ D A Q NL G ++ YY++ L+I
Sbjct: 104 AEPLCKRALEIREKVLGKFHPDVAKQ---LNNLALLCQNQGKAEEVEYYYRRALEIYATR 160
Query: 233 FGDK----AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD--LGDRAVE-AQACYS 285
G A +NL + ++ G+YQ A YK L A + G +
Sbjct: 161 LGPDDPNVAK---TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMH 217
Query: 286 LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATK 345
+ Y +D SLG + +G E A
Sbjct: 218 AEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDC 277
Query: 346 HLEISK 351
K
Sbjct: 278 ASRNRK 283
Score = 118 bits (298), Expect = 5e-30
Identities = 51/275 (18%), Positives = 81/275 (29%), Gaps = 46/275 (16%)
Query: 52 GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGE-----AKSSGNL 106
G D + + L Y Y++A L + E LG+ A + NL
Sbjct: 36 GHDHPDVATM-LNILALVYRDQNKYKEAAHLLNDALAI---REKTLGKDHPAVAATLNNL 91
Query: 107 GNTLKVMGKYDEAMVCCKRHLEISRQL--NDKLSEGRALYNLGNVYHAKGKAIGKVGQQD 164
GKY EA CKR LEI ++ + L NL + +GK
Sbjct: 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK--------- 142
Query: 165 PGEYPEEVKVCLQEAIKYYEQNLALMKEI-----NDTAAQGRACGNLGNTYYLLGNFKQA 219
+E YY + L + + A NL + Y G ++ A
Sbjct: 143 -----------AEEVEYYYRRALEIYATRLGPDDPNVAK---TKNNLASCYLKQGKYQDA 188
Query: 220 IYYHQERLKIARE--FGDKAAERRANS--NLGNSHIFLGEYQAASEHYKRTLVLAQDLG- 274
++E L A E FG + + + + ++ + + +
Sbjct: 189 ETLYKEILTRAHEKEFGSVNGD-NKPIWMHAEEREESKDKRRDSAPYGEYGSWY-KACKV 246
Query: 275 DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 309
D SLG Y A
Sbjct: 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281
Score = 98.8 bits (247), Expect = 4e-23
Identities = 45/271 (16%), Positives = 78/271 (28%), Gaps = 50/271 (18%)
Query: 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQL--NDKLSEGRALYNLGNVYHAKGKAIGKVGQ 162
+ + + A+ CK+ LE + +D L L VY + K
Sbjct: 6 HHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK------- 58
Query: 163 QDPGEYPEEVKVCLQEAIKYYEQNLALMKEIN-----DTAAQGRACGNLGNTYYLLGNFK 217
+EA LA+ ++ AA NL Y G +K
Sbjct: 59 -------------YKEAAHLLNDALAIREKTLGKDHPAVAA---TLNNLAVLYGKRGKYK 102
Query: 218 QAIYYHQERLKIARE-FGDK----AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD 272
+A + L+I + G A + +NL G+ + +Y+R L +
Sbjct: 103 EAEPLCKRALEIREKVLGKFHPDVAKQL---NNLALLCQNQGKAEEVEYYYRRALEIYAT 159
Query: 273 -LGDR--AVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE-----GRACW 324
LG V A+ +L + Y Y A + L A + G
Sbjct: 160 RLGPDDPNV-AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE--FGSVNGDNKPIWM 216
Query: 325 SLGNAHAARGNHEKALYFATKHLEISKQLGD 355
++ + + K
Sbjct: 217 HAEEREESKDKRRDSAPYGEYGSWY-KACKV 246
Score = 54.1 bits (131), Expect = 4e-08
Identities = 8/85 (9%), Positives = 19/85 (22%), Gaps = 11/85 (12%)
Query: 52 GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGE-----AKSSGNL 106
G+ + I+ + + Y + + +L
Sbjct: 205 GSVNGDNKP-IWMHAEEREESKDKRRDSAPYGEYGS-----WYKACKVDSPTVNTTLRSL 258
Query: 107 GNTLKVMGKYDEAMVCCKRHLEISR 131
G + GK + A +
Sbjct: 259 GALYRRQGKLEAAHTLEDCASRNRK 283
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 114 bits (289), Expect = 6e-28
Identities = 57/321 (17%), Positives = 107/321 (33%), Gaps = 60/321 (18%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
R +AGD A + D+ + + L + +F ++ + +
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDN----TGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 89 LARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148
+ A++ NLGN K G+ EA+ + L + + NL
Sbjct: 62 QNPLL------AEAYSNLGNVYKERGQLQEAIEHYRHALRL----KPDFID--GYINLAA 109
Query: 149 VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGN 208
A G ++ A++ Y AL + N +LGN
Sbjct: 110 ALVAAGD--------------------MEGAVQAYVS--AL--QYNPDLYC--VRSDLGN 143
Query: 209 TYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV 268
LG ++A + + ++ F A SNLG GE A H+++ +
Sbjct: 144 LLKALGRLEEAKACYLKAIETQPNFAV------AWSNLGCVFNAQGEIWLAIHHFEKAVT 197
Query: 269 LAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGN 328
L + A +LGN R + A+ +LR L ++ +L
Sbjct: 198 LDPNF------LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV------VHGNLAC 245
Query: 329 AHAARGNHEKALYFATKHLEI 349
+ +G + A+ + +E+
Sbjct: 246 VYYEQGLIDLAIDTYRRAIEL 266
Score = 113 bits (284), Expect = 3e-27
Identities = 64/321 (19%), Positives = 113/321 (35%), Gaps = 60/321 (18%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
G + G + + ++ A++ D Y L A GD + A+Q + L
Sbjct: 74 GNVYKERGQLQEAIEHYRHALRLKPDF----IDGYINLAAALVAAGDMEGAVQAYVSALQ 129
Query: 89 LARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148
++ +LGN LK +G+ +EA C + +E + A NLG
Sbjct: 130 YNPDL------YCVRSDLGNLLKALGRLEEAKACYLKAIET----QPNFAV--AWSNLGC 177
Query: 149 VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGN 208
V++A+G+ + AI ++E+ A+ ++ A NLGN
Sbjct: 178 VFNAQGE--------------------IWLAIHHFEK--AV--TLDPNFLD--AYINLGN 211
Query: 209 TYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV 268
F +A+ + L ++ + NL + G A + Y+R +
Sbjct: 212 VLKEARIFDRAVAAYLRALSLSPNHAV------VHGNLACVYYEQGLIDLAIDTYRRAIE 265
Query: 269 LAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGN 328
L A +L N A D + L + D + +L N
Sbjct: 266 LQPHF------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD------SLNNLAN 313
Query: 329 AHAARGNHEKALYFATKHLEI 349
+GN E+A+ K LE+
Sbjct: 314 IKREQGNIEEAVRLYRKALEV 334
Score = 110 bits (278), Expect = 2e-26
Identities = 56/294 (19%), Positives = 100/294 (34%), Gaps = 60/294 (20%)
Query: 42 VAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101
A + AI+ + + +S LG + G+ A+ + ++ +TL N
Sbjct: 155 KACYLKAIETQPNF----AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF------LD 204
Query: 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVG 161
+ NLGN LK +D A+ R L +S NL VY+ +G
Sbjct: 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV------VHGNLACVYYEQGL------ 252
Query: 162 QQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIY 221
+ AI Y + A+ E+ A NL N G+ +A
Sbjct: 253 --------------IDLAIDTYRR--AI--ELQPHFPD--AYCNLANALKEKGSVAEAED 292
Query: 222 YHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQ 281
+ L++ D + +NL N G + A Y++ L + + A
Sbjct: 293 CYNTALRLCPTHAD------SLNNLANIKREQGNIEEAVRLYRKALEVFPEF------AA 340
Query: 282 ACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGN 335
A +L + A+ ++ + I+ D A ++GN +
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD------AYSNMGNTLKEMQD 388
Score = 104 bits (263), Expect = 1e-24
Identities = 49/287 (17%), Positives = 94/287 (32%), Gaps = 56/287 (19%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+L + + GD++ A ++ Q + L + + D +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLW------RQEPDNTGVLLLLSSIHFQCRRLDRSAHF 55
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
++ + L + A NLGNVY +G+ LQEAI++
Sbjct: 56 STLAIKQNPLLAE------AYSNLGNVYKERGQ--------------------LQEAIEH 89
Query: 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRA 242
Y L + NL G+ + A+ + L+ +
Sbjct: 90 YRHAL----RLKPDFID--GYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC------V 137
Query: 243 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
S+LGN LG + A Y + + + A A +LG + + AI +
Sbjct: 138 RSDLGNLLKALGRLEEAKACYLKAIETQPNF------AVAWSNLGCVFNAQGEIWLAIHH 191
Query: 303 HLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
+ + + +D A +LGN ++A+ + L +
Sbjct: 192 FEKAVTLDPNFLD------AYINLGNVLKEARIFDRAVAAYLRALSL 232
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 112 bits (282), Expect = 2e-27
Identities = 52/308 (16%), Positives = 97/308 (31%), Gaps = 52/308 (16%)
Query: 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121
+ L ++Y D++ + + L TL + K +E
Sbjct: 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCL------PVHIGTLVELNKANELFY 77
Query: 122 CCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK----AI---GKVGQQDPG-------- 166
+ +++ + + +G Y G A K +
Sbjct: 78 LSHKLVDLYPSNPV------SWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAY 131
Query: 167 --EYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQ 224
+ E + +A+ Y LMK +G Y L N K A +
Sbjct: 132 GHSFAVESE--HDQAMAAYFTAAQLMK---GCH---LPMLYIGLEYGLTNNSKLAERFFS 183
Query: 225 ERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVE---AQ 281
+ L IA E +G GE++ A + + L + +G+
Sbjct: 184 QALSIAPEDPF------VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEP 237
Query: 282 ACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALY 341
+LG+ L+ Y A+DYH + L++ Q ++G H+ GN E A+
Sbjct: 238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQ------NASTYSAIGYIHSLMGNFENAVD 291
Query: 342 FATKHLEI 349
+ L +
Sbjct: 292 YFHTALGL 299
Score = 80.8 bits (200), Expect = 8e-17
Identities = 30/182 (16%), Positives = 64/182 (35%), Gaps = 39/182 (21%)
Query: 42 VAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101
FF A+ +D + ++G F G+++ A ++ L + + +++ K
Sbjct: 179 ERFFSQALSIAPED----PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK 234
Query: 102 SSG---NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIG 158
NLG+ + + KY EA+ ++ L + Q +G ++ G
Sbjct: 235 WEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ------NASTYSAIGYIHSLMGN--- 285
Query: 159 KVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQ 218
+ A+ Y+ L L + +DT + LG+ + +
Sbjct: 286 -----------------FENAVDYFHTALGLRR--DDTFSV----TMLGHCIEMYIGDSE 322
Query: 219 AI 220
A
Sbjct: 323 AY 324
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 107 bits (270), Expect = 1e-26
Identities = 44/258 (17%), Positives = 72/258 (27%), Gaps = 50/258 (19%)
Query: 45 FQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104
+ S Q GDY+KA + + + + +A
Sbjct: 8 HHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE------DAIPYI 61
Query: 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQD 164
N N L + + + A+ + LE+ + + A Y GNVY K
Sbjct: 62 NFANLLSSVNELERALAFYDKALEL----DSSAAT--AYYGAGNVYVVKEM--------- 106
Query: 165 PGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQ 224
+EA +E+ AL LG L K A+ Y Q
Sbjct: 107 -----------YKEAKDMFEK--AL--RAGMENGD--LFYMLGTVLVKLEQPKLALPYLQ 149
Query: 225 ERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 284
+++ + A G G A + A A Y
Sbjct: 150 RAVELNENDTE------ARFQFGMCLANEGMLDEALSQFAAVTEQDPGH------ADAFY 197
Query: 285 SLGNTYTLLRDYPTAIDY 302
+ G TY + A++
Sbjct: 198 NAGVTYAYKENREKALEM 215
Score = 100 bits (252), Expect = 4e-24
Identities = 41/268 (15%), Positives = 81/268 (30%), Gaps = 54/268 (20%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
R + GD F AI+ +D + Y N + + ++A+ ++ + L
Sbjct: 30 MGRGSEFGDYEKAAEAFTKAIEENKED----AIPYINFANLLSSVNELERALAFYDKALE 85
Query: 89 LARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148
L + A + GN V Y EA ++ L + + Y LG
Sbjct: 86 LDSSA------ATAYYGAGNVYVVKEMYKEAKDMFEKALRA----GMENGD--LFYMLGT 133
Query: 149 VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGN 208
V + + A+ Y ++ A+ E+N+ + A G
Sbjct: 134 VLVKLEQ--------------------PKLALPYLQR--AV--ELNENDTE--ARFQFGM 167
Query: 209 TYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV 268
G +A+ + D A N G ++ + + A E + +
Sbjct: 168 CLANEGMLDEALSQFAAVTEQDPGHAD------AFYNAGVTYAYKENREKALEMLDKAID 221
Query: 269 LAQDLGDRAVEAQACYSLGNTYTLLRDY 296
+ D A ++ +
Sbjct: 222 IQPDH------MLALHAKKLLGHHHHHH 243
Score = 90.3 bits (225), Expect = 2e-20
Identities = 47/276 (17%), Positives = 91/276 (32%), Gaps = 59/276 (21%)
Query: 74 GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL 133
+ + + +A G G Y++A + +E
Sbjct: 6 HHHHHSSGLVPRGSHMASMT---------GGQQMGRGSEFGDYEKAAEAFTKAIEE---- 52
Query: 134 NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI 193
N + + N N+ + + L+ A+ +Y++ AL E+
Sbjct: 53 NKEDAI--PYINFANLLSSVNE--------------------LERALAFYDK--AL--EL 86
Query: 194 NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL 253
+ +AA A GN Y + +K+A ++ L+ E GD LG + L
Sbjct: 87 DSSAAT--AYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGD------LFYMLGTVLVKL 138
Query: 254 GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 313
+ + A + +R + L ++ +A + G A+
Sbjct: 139 EQPKLALPYLQRAVELNEND------TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH 192
Query: 314 MDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
D A ++ G +A + N EKAL K ++I
Sbjct: 193 AD------AFYNAGVTYAYKENREKALEMLDKAIDI 222
Score = 60.6 bits (148), Expect = 2e-10
Identities = 28/174 (16%), Positives = 55/174 (31%), Gaps = 20/174 (11%)
Query: 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD 235
+ + ++ + L+ + G G++++A + ++ +E
Sbjct: 1 MGSSHHHHHHSSGLVP--RGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAI 58
Query: 236 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD 295
N N + E + A Y + L L A A Y GN Y +
Sbjct: 59 ------PYINFANLLSSVNELERALAFYDKALELDSSA------ATAYYGAGNVYVVKEM 106
Query: 296 YPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
Y A D + L + D + LG + AL + + +E+
Sbjct: 107 YKEAKDMFEKALRAGMENGD------LFYMLGTVLVKLEQPKLALPYLQRAVEL 154
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 111 bits (279), Expect = 6e-26
Identities = 48/322 (14%), Positives = 92/322 (28%), Gaps = 55/322 (17%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
+ L +A ++ +L +Y + G+ K +
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEIDPYNL----DVYPLHLASLHESGEKNKLYLISNDLVD 367
Query: 89 LARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148
+A + +G + K EA + + Q G A +
Sbjct: 368 RHPE------KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF------GPAWIGFAH 415
Query: 149 VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGN 208
+ +G+ +AI Y L + T LG
Sbjct: 416 SFAIEGE--------------------HDQAISAYTTAARLFQ---GTH---LPYLFLGM 449
Query: 209 TYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV 268
+ LGN A Y Q + + + LG + Q A H++ L+
Sbjct: 450 QHMQLGNILLANEYLQSSYALFQYDPL------LLNELGVVAFNKSDMQTAINHFQNALL 503
Query: 269 LAQDLGDRAVE-AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLG 327
L + A +LG+ Y L+ Y AID + L+++ + ++
Sbjct: 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN------DANVHTAIA 557
Query: 328 NAHAARGNHEKALYFATKHLEI 349
+ + A+ + L I
Sbjct: 558 LVYLHKKIPGLAITHLHESLAI 579
Score = 97.6 bits (243), Expect = 2e-21
Identities = 43/307 (14%), Positives = 82/307 (26%), Gaps = 57/307 (18%)
Query: 50 QAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNT 109
+D L ++Y N + + ++A Y L ++ + L +T
Sbjct: 262 TYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLL-------CKADT 314
Query: 110 LKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYP 169
L V ++ + + + LEI D H G+
Sbjct: 315 LFVRSRFIDVLAITTKILEIDPYNLD------VYPLHLASLHESGE-------------- 354
Query: 170 EEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKI 229
+ + + + A +G Y + +A Y + +
Sbjct: 355 ------KNKLYLISND--LV--DRHPEKAV--TWLAVGIYYLCVNKISEARRYFSKSSTM 402
Query: 230 AREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNT 289
+FG A +S GE+ A Y L Q LG
Sbjct: 403 DPQFGP------AWIGFAHSFAIEGEHDQAISAYTTAARLFQGT------HLPYLFLGMQ 450
Query: 290 YTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
+ L + A +Y + Q LG + + + A+ L +
Sbjct: 451 HMQLGNILLANEYLQSSYALFQYD------PLLLNELGVVAFNKSDMQTAINHFQNALLL 504
Query: 350 SKQLGDP 356
K+
Sbjct: 505 VKKTQSN 511
Score = 92.6 bits (230), Expect = 7e-20
Identities = 32/229 (13%), Positives = 66/229 (28%), Gaps = 45/229 (19%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ +++ G++ +A+ + L + LG +G A
Sbjct: 410 WIGFAHSFAIEGEHDQAISAYTTAARLFQGT------HLPYLFLGMQHMQLGNILLANEY 463
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
+ + L LG V K +Q AI +
Sbjct: 464 LQSSYAL----FQYDPL--LLNELGVVAFNKSD--------------------MQTAINH 497
Query: 183 YEQNLALMKEINDTA-AQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERR 241
++ L L+K+ NLG+ Y L + AI + L ++ +
Sbjct: 498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN------ 551
Query: 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY 290
++ + ++ A H +L ++ + E A L
Sbjct: 552 VHTAIALVYLHKKIPGLAITHLHESLAISPN------EIMASDLLKRAL 594
Score = 81.0 bits (200), Expect = 3e-16
Identities = 52/378 (13%), Positives = 109/378 (28%), Gaps = 71/378 (18%)
Query: 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHK 84
L L GE D + ++ +++ G Y L ++ +A + +K
Sbjct: 170 LNLLGETNPFRKDEKNANKLLMQDGG-----IKLEASMCYLRGQVYTNLSNFDRAKECYK 224
Query: 85 QDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALY 144
+ A ++ K EA + L ++D + L S + + R+LY
Sbjct: 225 E----ALMVDAKCYEAFDQLVSNHLLTADEEWDLVL-----KLNYSTYSKEDAAFLRSLY 275
Query: 145 NLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACG 204
L + + + Y ++ +++ +D
Sbjct: 276 MLKLNKTSHEDEL--------------------RRAEDYLSSINGLEKSSD------LLL 309
Query: 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYK 264
+T ++ F + + L+I D S GE
Sbjct: 310 CKADTLFVRSRFIDVLAITTKILEIDPYNLD------VYPLHLASLHESGEKNKLYLISN 363
Query: 265 RTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACW 324
+ + +A ++G Y + A Y + + + + G A
Sbjct: 364 DLVDRHPE------KAVTWLAVGIYYLCVNKISEARRYFSK----SSTMDPQFGP--AWI 411
Query: 325 SLGNAHAARGNHEKALYFATKHLEISKQLGDP---LGQVTAQMN-----VTDLRKALGMS 376
++ A G H++A+ T + + P LG Q+ L+ +
Sbjct: 412 GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSY--- 468
Query: 377 TNDLSPDSLQLINSYANA 394
L L+N
Sbjct: 469 --ALFQYDPLLLNELGVV 484
Score = 61.8 bits (150), Expect = 4e-10
Identities = 46/285 (16%), Positives = 85/285 (29%), Gaps = 39/285 (13%)
Query: 65 QLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCK 124
+ Y+ A ++ L + N D L G Y A
Sbjct: 89 LWRHDALMQQQYKCAAFVGEKVLDITGNPNDAF-------WLAQVYCCTGDYARAKCLLT 141
Query: 125 RHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYE 184
+ +R + L L + + A+ +G+ +P ++ K
Sbjct: 142 KEDLYNRSSACRYLAAFCLVKLYD-WQ---GALNLLGETNP----------FRKDEKNAN 187
Query: 185 QNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANS 244
+ L I A+ C G Y L NF +A ++E L + + + A
Sbjct: 188 KLLMQDGGIKLEAS---MCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE------AFD 238
Query: 245 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 304
L ++H+ + + L + + A ++ Y L T D + +L
Sbjct: 239 QLVSNHLLTADEEWDLVL---KLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295
Query: 305 RHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
+ ++ D + R L TK LEI
Sbjct: 296 SSINGLEKSSD------LLLCKADTLFVRSRFIDVLAITTKILEI 334
Score = 58.7 bits (142), Expect = 3e-09
Identities = 24/122 (19%), Positives = 36/122 (29%), Gaps = 15/122 (12%)
Query: 32 LCKAGDCRAGVAFFQAAIQAGTDDLR---TLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
D + + FQ A+ +A ++ LG+AY L Y A+ Q L
Sbjct: 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544
Query: 89 LARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148
L+ N +A + A+ L IS E A L
Sbjct: 545 LSTN------DANVHTAIALVYLHKKIPGLAITHLHESLAISPN------EIMASDLLKR 592
Query: 149 VY 150
Sbjct: 593 AL 594
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 106 bits (266), Expect = 8e-26
Identities = 39/292 (13%), Positives = 81/292 (27%), Gaps = 52/292 (17%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ + F +Y +A++ + N + KYD A
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN------SPYIYNRRAVCYYELAKYDLAQKD 59
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
+ + S G + KG+ AI+
Sbjct: 60 IETYFSKV-NATKAKSA--DFEYYGKILMKKGQ--------------------DSLAIQQ 96
Query: 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRA 242
Y+ A+ + + T G +G+ +Y GNF AI Y +++++
Sbjct: 97 YQA--AV--DRDTTRLD--MYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK------V 144
Query: 243 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD---YPTA 299
LG ++ + EY A + + L L ++ A
Sbjct: 145 FYELGQAYYYNKEYVKADSSFVKVLELKPNI------YIGYLWRARANAAQDPDTKQGLA 198
Query: 300 IDYHLRHLIIAQQLMDRVGE--GRACWSLGNAHAARGNHEKALYFATKHLEI 349
Y+ + + + + + A + + + KA L +
Sbjct: 199 KPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250
Score = 103 bits (259), Expect = 6e-25
Identities = 37/279 (13%), Positives = 79/279 (28%), Gaps = 50/279 (17%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
+ L K + + F + IY++ Y+ L Y A + +
Sbjct: 10 ADFLFKNNNYAEAIEVFNKLEAKKYNS----PYIYNRRAVCYYELAKYDLAQKDI-ETYF 64
Query: 89 LARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148
N G L G+ A+ + ++ + + +G+
Sbjct: 65 SKVNATKAKSADFE--YYGKILMKKGQDSLAIQQYQAAVDR----DTTRLD--MYGQIGS 116
Query: 149 VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGN 208
++ KG AI+Y E+ + T + LG
Sbjct: 117 YFYNKGN--------------------FPLAIQYMEKQI----RPTTTDPK--VFYELGQ 150
Query: 209 TYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG---EYQAASEHYKR 265
YY + +A + L++ ++ + A +Y++
Sbjct: 151 AYYYNKEYVKADSSFVKVLELKPNIYI------GYLWRARANAAQDPDTKQGLAKPYYEK 204
Query: 266 TLVLAQDLGDRAVE--AQACYSLGNTYTLLRDYPTAIDY 302
+ + G + + +A + YT+ RD A
Sbjct: 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243
Score = 88.5 bits (220), Expect = 1e-19
Identities = 28/239 (11%), Positives = 58/239 (24%), Gaps = 49/239 (20%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ G G A+Q ++ + G +G+ G + A+
Sbjct: 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTT------RLDMYGQIGSYFYNKGNFPLAIQY 130
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
++ + + Y LG Y+ + +A
Sbjct: 131 MEKQIRPTTTDPK------VFYELGQAYYYNKE--------------------YVKADSS 164
Query: 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGN---FKQAIYYHQERLKIAREFGD--KA 237
+ + L L I A Y+++ +++ G K
Sbjct: 165 FVKVLELKPNIYI------GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKD 218
Query: 238 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY 296
AN + + + A +K L L +A L +
Sbjct: 219 ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN------KKAIDGLKMKLEHHHHH 271
Score = 72.3 bits (178), Expect = 3e-14
Identities = 29/263 (11%), Positives = 62/263 (23%), Gaps = 52/263 (19%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
+ + EAI+ + + +
Sbjct: 5 VEFRYADFLFKNNN--------------------YAEAIEVFNKLE----AKKYNSPY-- 38
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
YY L + A + K+ G + G+ A +
Sbjct: 39 IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKS---ADFEYYGKILMKKGQDSLAIQ 95
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321
Y+ + +G+ + ++P AI Y + +
Sbjct: 96 QYQAAVDRDTT------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK------ 143
Query: 322 ACWSLGNAHAARGNHEKALYFATKHLEISKQLGDP---LGQVTAQMN--------VTDLR 370
+ LG A+ + KA K LE+ + + A +
Sbjct: 144 VFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYE 203
Query: 371 KALGMSTNDLSPDSLQLINSYAN 393
K + + + +LI +
Sbjct: 204 KLIEVCAPGGAKYKDELIEANEY 226
Score = 59.6 bits (145), Expect = 5e-10
Identities = 27/181 (14%), Positives = 52/181 (28%), Gaps = 45/181 (24%)
Query: 42 VAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101
+ + + I+ T D ++ +LG AY+Y +Y KA + L L N+
Sbjct: 128 IQYMEKQIRPTTTD----PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI------YI 177
Query: 102 SSGNLGNTLKVMG---KYDEAMVCCKRHLEI----SRQLNDKLSEGRALYNLGNVYHAKG 154
K A ++ +E+ + D+L E A + Y
Sbjct: 178 GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIE--ANEYIAYYYTINR 235
Query: 155 KAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLG 214
+A ++ L ++ T + A L
Sbjct: 236 D--------------------KVKADAAWKN--IL--ALDPTNKK--AIDGLKMKLEHHH 269
Query: 215 N 215
+
Sbjct: 270 H 270
Score = 37.3 bits (87), Expect = 0.011
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 10/79 (12%)
Query: 42 VAFFQAAIQAGTDDLRT----LSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKL 97
+++ I+ L + Y D KA K L L + +K
Sbjct: 199 KPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNK- 255
Query: 98 GEAKSSGNLGNTLKVMGKY 116
+A L L+ +
Sbjct: 256 -KAID--GLKMKLEHHHHH 271
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 102 bits (256), Expect = 7e-25
Identities = 37/238 (15%), Positives = 67/238 (28%), Gaps = 40/238 (16%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+LG + LG Y A+ ++ L ++ L T +G + A+
Sbjct: 8 PLRLGVQLYALGRYDAALTLFERALKENPQD------PEALYWLARTQLKLGLVNPALEN 61
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
K + + L Y A + ++ G ++A+
Sbjct: 62 GKTLVAR----TPRYLG--GYMVLSEAYVALYRQAEDR-ERGKGYL--------EQALSV 106
Query: 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRA 242
+ A +N A G Y LLG +A ++ L + + E
Sbjct: 107 LKD--AE--RVNPRYAP--LHLQRGLVYALLGERDKAEASLKQALAL-----EDTPE--I 153
Query: 243 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 300
S L ++ +G A Y + L A + L A
Sbjct: 154 RSALAELYLSMGRLDEALAQYAKALEQAPKD------LDLRVRYASALLLKGKAEEAA 205
Score = 96.5 bits (241), Expect = 5e-23
Identities = 40/241 (16%), Positives = 68/241 (28%), Gaps = 50/241 (20%)
Query: 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQD 164
LG L +G+YD A+ +R L+ + Q + ALY L G
Sbjct: 10 RLGVQLYALGRYDAALTLFERALKENPQDPE------ALYWLARTQLKLGL--------- 54
Query: 165 PGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQ 224
+ A++ + + L Y L + +
Sbjct: 55 -----------VNPALENGKT--LV--ARTPRYLG--GYMVLSEAYVALYRQAEDRERGK 97
Query: 225 ERLKIAREFGDKAAERRAN-----SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVE 279
L+ A A G + LGE A K+ L L
Sbjct: 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT------- 150
Query: 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKA 339
+ +L Y + A+ + + L A + +D +A +G E+A
Sbjct: 151 PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD------LRVRYASALLLKGKAEEA 204
Query: 340 L 340
Sbjct: 205 A 205
Score = 66.8 bits (164), Expect = 1e-12
Identities = 36/219 (16%), Positives = 59/219 (26%), Gaps = 56/219 (25%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
LG +A G+ A+ +E+ AL + N +
Sbjct: 7 NPLRLGVQLYALGR--------------------YDAALTLFER--AL--KENPQDPE-- 40
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL-------- 253
A L T LG A+ + + + L +++ L
Sbjct: 41 ALYWLARTQLKLGLVNPALENGKTLVARTPRYLG------GYMVLSEAYVALYRQAEDRE 94
Query: 254 ---GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 310
G + A K + A G Y LL + A + A
Sbjct: 95 RGKGYLEQALSVLKDAERVNPRY------APLHLQRGLVYALLGERDKAEASLKQ----A 144
Query: 311 QQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
L D +L + + G ++AL K LE
Sbjct: 145 LALEDTP---EIRSALAELYLSMGRLDEALAQYAKALEQ 180
Score = 61.0 bits (149), Expect = 8e-11
Identities = 25/125 (20%), Positives = 35/125 (28%), Gaps = 33/125 (26%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ Q G Y LG+ KA KQ L L + L MG+ DEA+
Sbjct: 121 HLQRGLVYALLGERDKAEASLKQALALEDT-------PEIRSALAELYLSMGRLDEALAQ 173
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
+ LE K + + KGK +EA +
Sbjct: 174 YAKALEQ----APKDLD--LRVRYASALLLKGK--------------------AEEAARA 207
Query: 183 YEQNL 187
Sbjct: 208 AALEH 212
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 102 bits (256), Expect = 1e-24
Identities = 37/244 (15%), Positives = 72/244 (29%), Gaps = 48/244 (19%)
Query: 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121
Y QLG Y G+ ++A ++ L + + A + L + + A
Sbjct: 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS------ADAHAALAVVFQTEMEPKLADE 92
Query: 122 CCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181
++ L + R L N G + + + +EA +
Sbjct: 93 EYRKALASDSRN------ARVLNNYGGFLYEQKR--------------------YEEAYQ 126
Query: 182 YYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERR 241
+ A + ++ NLG + QA Y ++ L++ R
Sbjct: 127 RLLE--ASQDTLYPERSR--VFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS------ 176
Query: 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 301
+ + EY A ++Y A++ + D TA
Sbjct: 177 VALEMADLLYKEREYVPARQYYDLFAQGGGQN------ARSLLLGIRLAKVFEDRDTAAS 230
Query: 302 YHLR 305
Y L+
Sbjct: 231 YGLQ 234
Score = 95.4 bits (238), Expect = 3e-22
Identities = 41/284 (14%), Positives = 85/284 (29%), Gaps = 55/284 (19%)
Query: 66 LGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKR 125
+ G + K D+ +A LG G ++A V ++
Sbjct: 10 HSSGLVPRGSHMGDQNPLK-----TDKGRDEARDAYI--QLGLGYLQRGNTEQAKVPLRK 62
Query: 126 HLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185
LEI + ++ A L V+ + + + A + Y +
Sbjct: 63 ALEI----DPSSAD--AHAALAVVFQTEME--------------------PKLADEEYRK 96
Query: 186 NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSN 245
AL + A+ N G Y +++A +RL A + R N
Sbjct: 97 --AL--ASDSRNAR--VLNNYGGFLYEQKRYEEAY----QRLLEASQDTLYPERSRVFEN 146
Query: 246 LGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLR 305
LG + + + A E+++++L L ++ + + R+Y A Y+
Sbjct: 147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQ------PSVALEMADLLYKEREYVPARQYYDL 200
Query: 306 HLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
Q + + + A + + +
Sbjct: 201 FAQGGGQNAR------SLLLGIRLAKVFEDRDTAASYGLQLKRL 238
Score = 86.6 bits (215), Expect = 3e-19
Identities = 29/220 (13%), Positives = 63/220 (28%), Gaps = 46/220 (20%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
++ L + + + A + +++ L + N G L +Y+EA
Sbjct: 74 HAALAVVFQTEMEPKLADEEYRKALASDSR----NARVLN--NYGGFLYEQKRYEEAYQR 127
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
+ + L + S NLG V K +A +Y
Sbjct: 128 LLEASQDT--LYPERSR--VFENLGLVSLQMKK--------------------PAQAKEY 163
Query: 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRA 242
+E+ +L +N Q + + Y + A Y+ + + +
Sbjct: 164 FEK--SL--RLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNAR------S 211
Query: 243 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQA 282
+ A+ + + L ++E Q
Sbjct: 212 LLLGIRLAKVFEDRDTAASYGLQLKRLYPG----SLEYQE 247
Score = 57.7 bits (140), Expect = 2e-09
Identities = 17/124 (13%), Positives = 32/124 (25%), Gaps = 14/124 (11%)
Query: 32 LCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLAR 91
L + A Q R+ + LG + +A +Y ++ L L R
Sbjct: 115 LYEQKRYEEAYQRLLEASQDTLYPERSRV--FENLGLVSLQMKKPAQAKEYFEKSLRLNR 172
Query: 92 NMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYH 151
N + + + L +Y A + Q +L +
Sbjct: 173 NQ------PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNAR------SLLLGIRLAK 220
Query: 152 AKGK 155
Sbjct: 221 VFED 224
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 99 bits (250), Expect = 1e-23
Identities = 34/278 (12%), Positives = 81/278 (29%), Gaps = 58/278 (20%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
GN ++ + +A++++ + L +++ N G+Y+ A+
Sbjct: 8 EKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-------YLNNRAAAEYEKGEYETAIST 60
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
+E R++ + + G A L++ I+Y
Sbjct: 61 LNDAVEQGREMRA------DYKVISKSFARIGNA-------------YHKLGDLKKTIEY 101
Query: 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRA 242
Y+++L + L N ++ + + + E +
Sbjct: 102 YQKSLTEH--------------RTADILTKLRNAEKELKKAEAEAYVNPEKAE------E 141
Query: 243 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
G + ++ A + Y + A + +A+ + L +P AI
Sbjct: 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIAD 195
Query: 303 HLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKAL 340
+ + + A A A + AL
Sbjct: 196 CNKAIEKDPNFVR------AYIRKATAQIAVKEYASAL 227
Score = 94.5 bits (236), Expect = 6e-22
Identities = 37/284 (13%), Positives = 81/284 (28%), Gaps = 56/284 (19%)
Query: 18 GGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQ 77
GG+M + EG + KA + + A + D + A + G+Y+
Sbjct: 1 GGSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKD-----ITYLNNRAAAEYEKGEYE 55
Query: 78 KAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKL 137
A+ + R M + + +G + K+ +E K
Sbjct: 56 TAISTLNDAVEQGREM------RADYKVISKSFARIGNAYHKLGDLKKTIEY----YQKS 105
Query: 138 SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTA 197
+ ++ ++ +K E +N
Sbjct: 106 L---TEHRTADILTKLRN--------------------AEKELKKAEAEA----YVNPEK 138
Query: 198 AQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQ 257
A+ G Y+ ++ A+ + E +K A E SN + L +
Sbjct: 139 AE--EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR------GYSNRAAALAKLMSFP 190
Query: 258 AASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 301
A + + + +A +++Y +A++
Sbjct: 191 EAIADCNKAIEKDPNF------VRAYIRKATAQIAVKEYASALE 228
Score = 86.1 bits (214), Expect = 5e-19
Identities = 32/238 (13%), Positives = 66/238 (27%), Gaps = 49/238 (20%)
Query: 32 LCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLAR 91
+ G+ ++ A++ G + A Y + ++ +G+ + DL
Sbjct: 48 EYEKGEYETAISTLNDAVEQGREM----RADYKVISKSFARIGNAYHKLG----DLKKTI 99
Query: 92 NMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYH 151
K + L + ++ + + + N + +E G Y
Sbjct: 100 EYYQKSLTEH---RTADILTKLRNAEKELKKAEAEAYV----NPEKAE--EARLEGKEYF 150
Query: 152 AKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYY 211
K A+K Y + + + A R N
Sbjct: 151 TKSD--------------------WPNAVKAYTE--MI--KRAPEDA--RGYSNRAAALA 184
Query: 212 LLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 269
L +F +AI + ++ F A + I + EY +A E
Sbjct: 185 KLMSFPEAIADCNKAIEKDPNFVR------AYIRKATAQIAVKEYASALETLDAARTK 236
Score = 74.5 bits (184), Expect = 4e-15
Identities = 20/226 (8%), Positives = 53/226 (23%), Gaps = 49/226 (21%)
Query: 32 LCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLAR 91
+ G+ + + I+ S + + L + +K ++ + + +
Sbjct: 82 FARIGNAYHKLGDLKKTIEYYQK-----SLTEHRTADILTKLRNAEKELKKAEAEAYVNP 136
Query: 92 NMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYH 151
+A+ + G + A+ ++ + + N
Sbjct: 137 E------KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR----APEDAR--GYSNRAAALA 184
Query: 152 AKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYY 211
EAI + A+ E + RA
Sbjct: 185 KLMS--------------------FPEAIADCNK--AI--EKDPNFV--RAYIRKATAQI 218
Query: 212 LLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQ 257
+ + A+ E + +S ++ Q
Sbjct: 219 AVKEYASALETLDAARTKDAEVNN------GSSAREIDQLYYKASQ 258
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 102 bits (256), Expect = 4e-23
Identities = 36/324 (11%), Positives = 82/324 (25%), Gaps = 64/324 (19%)
Query: 45 FQAAIQAGTDDLRT---LSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101
+ + + A T D + G +F + A ++ + L
Sbjct: 225 YHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-------PN 277
Query: 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVG 161
S L TL E ++ ++++ + Y+ G +Y
Sbjct: 278 SYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP------TYYHRGQMYFILQD------ 325
Query: 162 QQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIY 221
+ A + +++ A +N L Y G F ++
Sbjct: 326 --------------YKNAKEDFQK--AQ--SLNPENVY--PYIQLACLLYKQGKFTESEA 365
Query: 222 YHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD--------- 272
+ E + + G++ A + Y L +
Sbjct: 366 FFNETKLKFPTLPE------VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419
Query: 273 -LGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHA 331
L +A S T + AI + + + A L
Sbjct: 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ------AKIGLAQLKL 473
Query: 332 ARGNHEKALYFATKHLEISKQLGD 355
++A+ +++ + +
Sbjct: 474 QMEKIDEAIELFEDSAILARTMDE 497
Score = 99.8 bits (249), Expect = 2e-22
Identities = 41/272 (15%), Positives = 71/272 (26%), Gaps = 53/272 (19%)
Query: 42 VAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101
FFQ A+ + Y G YF L DY+ A + ++ +L
Sbjct: 296 FKFFQKAVDLNPEY----PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN------VY 345
Query: 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVG 161
L L GK+ E+ L E + +G
Sbjct: 346 PYIQLACLLYKQGKFTESEAFFNETKLK----FPTLPE--VPTFFAEILTDRGD------ 393
Query: 162 QQDPGEYPEEVKVCLQEAIKYYEQNLAL----------MKEINDTAAQGRACGNLGNTYY 211
AIK Y+ L + + A + T
Sbjct: 394 --------------FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQL 439
Query: 212 LLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ 271
F AI + ++ A L + + + A E ++ + +LA+
Sbjct: 440 DEEKFNAAIKLLTKACELDPRSEQ------AKIGLAQLKLQMEKIDEAIELFEDSAILAR 493
Query: 272 DLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 303
+ + ++A LR P
Sbjct: 494 TMDE-KLQATTFAEAAKIQKRLRADPIISAKM 524
Score = 87.5 bits (217), Expect = 2e-18
Identities = 43/324 (13%), Positives = 90/324 (27%), Gaps = 29/324 (8%)
Query: 36 GDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMED 95
G G + + GN +F ++ +A++Y++ + L N
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN--- 57
Query: 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK 155
E N+ G ++ + + LEI S+ AL + + G
Sbjct: 58 ---EPVFYSNISACYISTGDLEKVIEFTTKALEI----KPDHSK--ALLRRASANESLGN 108
Query: 156 ---AIG--KVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTY 210
A+ V + ++ L+ + + D + + +
Sbjct: 109 FTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA 168
Query: 211 YLLGNFKQAI----YYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRT 266
G F + A A +R ++ + +++ Y
Sbjct: 169 SFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL 228
Query: 267 L-VLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWS 325
L D R A A G + L + A + L +
Sbjct: 229 LSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE----SINLHPTP---NSYIF 281
Query: 326 LGNAHAARGNHEKALYFATKHLEI 349
L A + N ++ F K +++
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDL 305
Score = 85.2 bits (211), Expect = 2e-17
Identities = 31/233 (13%), Positives = 63/233 (27%), Gaps = 27/233 (11%)
Query: 42 VAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101
FQ A ++ Y QL + G + ++ + + +
Sbjct: 330 KEDFQKAQSLNPEN----VYPYIQLACLLYKQGKFTESEAFFNETKLKFPT------LPE 379
Query: 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVG 161
L G +D A+ + + + +G + +
Sbjct: 380 VPTFFAEILTDRGDFDTAIKQYDIAKRL----EEVQEK--IHVGIGPLIGKATILARQSS 433
Query: 162 QQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIY 221
Q E+ AIK + A E++ + Q A L + +AI
Sbjct: 434 QDPTQLDEEK----FNAAIKLLTK--AC--ELDPRSEQ--AKIGLAQLKLQMEKIDEAIE 483
Query: 222 YHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG 274
++ +AR + + + L S + TL + G
Sbjct: 484 LFEDSAILARTMDE-KLQATTFAEAAKIQKRLRADPIISAKMELTLARYRAKG 535
Score = 81.3 bits (201), Expect = 3e-16
Identities = 43/353 (12%), Positives = 86/353 (24%), Gaps = 69/353 (19%)
Query: 42 VAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQ------------DLTL 89
+ F A++ D S + +A LG++ AM + L
Sbjct: 79 IEFTTKALEIKPDH----SKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPML 134
Query: 90 ARNMEDKLGE------AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRAL 143
RN+ + + +K G L HLE+S + A
Sbjct: 135 ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD-TAY 193
Query: 144 YNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRAC 203
L + A + + + + L + A
Sbjct: 194 ALLSDALQRLYSATDEGYLVANDLLTKSTD-MYHSLLSANTVDDPLRENAAL------AL 246
Query: 204 GNLGNTYYLLGNFKQAI----------------------YYHQERLKIAREFGDKAAERR 241
G ++L N A +E + +F KA +
Sbjct: 247 CYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN 306
Query: 242 ANS-----NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY 296
+ G + L +Y+ A E +++ L + L +
Sbjct: 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN------VYPYIQLACLLYKQGKF 360
Query: 297 PTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
+ + + L + RG+ + A+ +
Sbjct: 361 TESEAFFNETKLKFPTLPE------VPTFFAEILTDRGDFDTAIKQYDIAKRL 407
Score = 43.9 bits (104), Expect = 1e-04
Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 21/93 (22%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
L + +A++ + LAR M++KL T K + +
Sbjct: 465 KIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL--------QATTFAEAAKIQKRL-- 514
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK 155
+ + +S + Y AKG
Sbjct: 515 ---------RADPIISA--KMELTLARYRAKGM 536
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 94.1 bits (235), Expect = 2e-22
Identities = 34/209 (16%), Positives = 56/209 (26%), Gaps = 44/209 (21%)
Query: 61 AIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAM 120
Y G ++ G Y +A+ +Q + +LG G D
Sbjct: 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD------VDVALHLGIAYVKTGAVDRGT 62
Query: 121 VCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAI 180
+R L + LG Y K A+
Sbjct: 63 ELLERSLAD----APDNVK--VATVLGLTYVQVQK--------------------YDLAV 96
Query: 181 KYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAER 240
+ E N LG LG F +AI + L + G
Sbjct: 97 PLLIK--VA--EANPINFN--VRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK----- 145
Query: 241 RANSNLGNSHIFLGEYQAASEHYKRTLVL 269
+ + S+ +G ++ A H+K+ L
Sbjct: 146 -VHRAIAFSYEQMGRHEEALPHFKKANEL 173
Score = 92.5 bits (231), Expect = 7e-22
Identities = 25/198 (12%), Positives = 61/198 (30%), Gaps = 44/198 (22%)
Query: 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQD 164
+ G + G+Y +A++ ++ + + + +LG Y G
Sbjct: 13 DKGISHAKAGRYSQAVMLLEQVYDA----DAFDVD--VALHLGIAYVKTGA--------- 57
Query: 165 PGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQ 224
+ + E+ +L + LG TY + + A+
Sbjct: 58 -----------VDRGTELLER--SL--ADAPDNVK--VATVLGLTYVQVQKYDLAVPLLI 100
Query: 225 ERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 284
+ + + LG + LG + A + +K L L + +
Sbjct: 101 KVAEANPINFN------VRFRLGVALDNLGRFDEAIDSFKIALGLRPNE------GKVHR 148
Query: 285 SLGNTYTLLRDYPTAIDY 302
++ +Y + + A+ +
Sbjct: 149 AIAFSYEQMGRHEEALPH 166
Score = 57.5 bits (140), Expect = 9e-10
Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 18/145 (12%)
Query: 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYK 264
+ G ++ G + QA+ ++ D +LG +++ G +E +
Sbjct: 13 DKGISHAKAGRYSQAVMLLEQVYDADAFDVD------VALHLGIAYVKTGAVDRGTELLE 66
Query: 265 RTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACW 324
R+L A D + LG TY ++ Y A+ ++ + +
Sbjct: 67 RSLADAPDN------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFN------VRF 114
Query: 325 SLGNAHAARGNHEKALYFATKHLEI 349
LG A G ++A+ L +
Sbjct: 115 RLGVALDNLGRFDEAIDSFKIALGL 139
Score = 47.8 bits (115), Expect = 2e-06
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+LG A LG + +A+ K L L + E K + + + MG+++EA+
Sbjct: 113 RFRLGVALDNLGRFDEAIDSFKIALGL------RPNEGKVHRAIAFSYEQMGRHEEALPH 166
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVY 150
K+ E+ ++ S L V
Sbjct: 167 FKKANEL----DEGASV-----ELALVP 185
Score = 42.8 bits (102), Expect = 8e-05
Identities = 15/97 (15%), Positives = 24/97 (24%), Gaps = 12/97 (12%)
Query: 244 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 303
+ G SH G Y A ++ LG Y +
Sbjct: 12 RDKGISHAKAGRYSQAVMLLEQVYDADAFD------VDVALHLGIAYVKTGAVDRGTELL 65
Query: 304 LRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKAL 340
R L A + LG + ++ A+
Sbjct: 66 ERSLADAPDNVK------VATVLGLTYVQVQKYDLAV 96
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 98.9 bits (246), Expect = 4e-22
Identities = 45/334 (13%), Positives = 98/334 (29%), Gaps = 45/334 (13%)
Query: 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHK 84
LA+ RL + + + AI+ D+ + +L + + + +
Sbjct: 178 LAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVE 237
Query: 85 QDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALY 144
+ L A + + + D+A+ K+ LE
Sbjct: 238 EALEKAPG------VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAY------LHC 285
Query: 145 NLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACG 204
+G Y AK + + + ++ + A+ + ++ E ND R C
Sbjct: 286 QIGCCYRAKVFQVMNLRENGMYGK-RKLLELIGHAVAHLKKAD----EANDNLF--RVCS 338
Query: 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIF-LGEYQAASEHY 263
L + + L +++A YY Q+ K + GN ++ + A H+
Sbjct: 339 ILASLHALADQYEEAEYYFQKEFSKELTPVAKQL---LHLRYGNFQLYQMKCEDKAIHHF 395
Query: 264 KRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRAC 323
+ + Q ++ L+ I +L + A
Sbjct: 396 IEGVKINQKSREK----------EKMKDKLQK------------IAKMRLSKNGADSEAL 433
Query: 324 WSLGNAHAARGNHEKALYFATKHLEISKQLGDPL 357
L ++A + + LE +
Sbjct: 434 HVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467
Score = 81.9 bits (202), Expect = 1e-16
Identities = 44/327 (13%), Positives = 90/327 (27%), Gaps = 53/327 (16%)
Query: 61 AIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS---GNLGNTLKVMGKYD 117
+ + L G + A++ ++ L + E +S GN MG+
Sbjct: 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLS 111
Query: 118 EAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQ 177
+ + + + + + + +G K G G E KVC +
Sbjct: 112 DVQIYVDKVKHVCEKFSSPYR-----IESPELDCEEGWTRLKCG----GNQNERAKVCFE 162
Query: 178 EAIK------YYEQNLAL----MKEINDTAAQGRACG-------NLGNTYYLLGNFKQAI 220
+A++ + LA+ + + + LL +
Sbjct: 163 KALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM 222
Query: 221 YYHQERLKIAREFGDKAAERR-----ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD 275
E + ++A E+ + + E A E K+ L +
Sbjct: 223 REEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN--- 279
Query: 276 RAVEAQACYSLGNTY-TLLRDYPTAIDYHLRHLIIAQQLMDRVGE------------GRA 322
A +G Y + + + +L+ R
Sbjct: 280 ---NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRV 336
Query: 323 CWSLGNAHAARGNHEKALYFATKHLEI 349
C L + HA +E+A Y+ K
Sbjct: 337 CSILASLHALADQYEEAEYYFQKEFSK 363
Score = 77.7 bits (191), Expect = 3e-15
Identities = 39/259 (15%), Positives = 75/259 (28%), Gaps = 67/259 (25%)
Query: 62 IYSQLGNAYFYLGDYQKAMQYHKQDLT-----------LARNMEDKLGEAKSSGN--LGN 108
+ Y + KA++ K+ L + K+ + + +
Sbjct: 249 VLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYG 308
Query: 109 TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEY 168
K++ A+ K+ E + R L +++ +
Sbjct: 309 KRKLLELIGHAVAHLKKADEA------NDNLFRVCSILASLHALADQ------------- 349
Query: 169 PEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNT-YYLLGNFKQAIYYHQERL 227
+EA Y+++ KE+ A Q GN Y + +AI++ E +
Sbjct: 350 -------YEEAEYYFQK--EFSKELTPVAKQLLHL-RYGNFQLYQMKCEDKAIHHFIEGV 399
Query: 228 KIAREFGD---------KAAERR---------ANSNLGNSHIFLGEYQAASEHYKRTLVL 269
KI ++ + K A+ R A L + Q A E +R L
Sbjct: 400 KINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459
Query: 270 AQDLGDRAVEAQACYSLGN 288
+ A G
Sbjct: 460 GSLIPS------ASSWNGE 472
Score = 72.7 bits (178), Expect = 1e-13
Identities = 39/287 (13%), Positives = 91/287 (31%), Gaps = 44/287 (15%)
Query: 73 LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQ 132
L + + ++ + + +++ +A L + G+ + A+ C ++ E+ +Q
Sbjct: 24 LMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQ 83
Query: 133 LNDKLSEGRAL---YNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189
+ +E R+L N VY+ G+ L + Y ++ +
Sbjct: 84 EHADQAEIRSLVTWGNYAWVYYHMGR--------------------LSDVQIYVDKVKHV 123
Query: 190 MKEINDTA--AQGRACGNLGNTYYLLG--NFKQAIYYHQERLKIAREFGDKAAERRANSN 245
++ + G T G ++A ++ L+ + + S
Sbjct: 124 CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE------FTSG 177
Query: 246 LGNSHIFL---GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
L + L Q A + ++ + L D L +R+
Sbjct: 178 LAIASYRLDNWPPSQNAIDPLRQAIRLNPDN------QYLKVLLALKLHKMREEGEEEGE 231
Query: 303 HLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
+ + A + V + S + + +KA+ K LE
Sbjct: 232 GEKLVEEALEKAPGVTD--VLRSAAKFYRRKDEPDKAIELLKKALEY 276
Score = 52.2 bits (125), Expect = 3e-07
Identities = 30/234 (12%), Positives = 71/234 (30%), Gaps = 21/234 (8%)
Query: 177 QEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDK 236
+ ++ +E + E + + C L +L G + A+ ++ ++ ++
Sbjct: 28 ENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHAD 87
Query: 237 AAERR---ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD--RAVEAQACYSLGNTYT 291
AE R N + +G + + + + R + G T
Sbjct: 88 QAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRL 147
Query: 292 LL--RDYPTAIDYHLRHLIIAQQLMD-RVGEGRACWSLGN---AHAARGNHEKALYFATK 345
A + L + + G A + L N + A +A+
Sbjct: 148 KCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207
Query: 346 HLEISKQLGDPLGQVTAQMNVTD-----LRKALGMSTNDLSPDSLQLINSYANA 394
+ + L L ++ + + +AL + +P ++ S A
Sbjct: 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEAL-----EKAPGVTDVLRSAAKF 256
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 93.9 bits (234), Expect = 2e-21
Identities = 45/287 (15%), Positives = 81/287 (28%), Gaps = 42/287 (14%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
L +A + + + + + + G Y LG A Q L
Sbjct: 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71
Query: 89 LARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148
+ +M + LG L G +D A LE+ + + A N G
Sbjct: 72 IRPDM------PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----DPTYNY--AHLNRGI 119
Query: 149 VYHAKGK---AI---GKVGQQDPGEYPE--------EVKVCLQEAIKYYEQNLALMKEIN 194
+ G+ A Q DP P E K+ ++A + +Q K
Sbjct: 120 ALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQ--HFEKSDK 176
Query: 195 DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG 254
+ LGN ++ + +A + N LG ++ LG
Sbjct: 177 EQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSLAEHLSE------TNFYLGKYYLSLG 229
Query: 255 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 301
+ +A+ +K + +LL +
Sbjct: 230 DLDSATALFKLAVANNVH------NFVEHRYALLELSLLGQDQDDLA 270
Score = 85.8 bits (213), Expect = 8e-19
Identities = 38/278 (13%), Positives = 69/278 (24%), Gaps = 50/278 (17%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
L + + +Q L +D+ + G +G A
Sbjct: 8 SEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLY--ERGVLYDSLGLRALARND 65
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
+ L I + E LG G A +
Sbjct: 66 FSQALAI----RPDMPE--VFNYLGIYLTQAGN--------------------FDAAYEA 99
Query: 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRA 242
++ L E++ T A N G Y G K A +
Sbjct: 100 FDS--VL--ELDPTYNY--AHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF------R 147
Query: 243 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
+ L + L E QA + + ++ + LGN
Sbjct: 148 SLWLYLAEQKLDEKQAKEVLKQH---FEKSDKEQWGWNIVEFYLGNISEQTL-MERLKAD 203
Query: 303 HLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKAL 340
+ +A+ L + + LG + + G+ + A
Sbjct: 204 ATDNTSLAEHLSE------TNFYLGKYYLSLGDLDSAT 235
Score = 77.0 bits (190), Expect = 9e-16
Identities = 38/257 (14%), Positives = 69/257 (26%), Gaps = 56/257 (21%)
Query: 99 EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIG 158
+ S L L+ + + + ++ L +D+ ++ LY G +Y + G
Sbjct: 4 SWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQ--LLYERGVLYDSLGL--- 58
Query: 159 KVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQ 218
A + Q AL I + LG GNF
Sbjct: 59 -----------------RALARNDFSQ--AL--AIRPDMPE--VFNYLGIYLTQAGNFDA 95
Query: 219 AIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV 278
A L++ + A+ N G + + G + A + +
Sbjct: 96 AYEAFDSVLELDPTYNY------AHLNRGIALYYGGRDKLAQDDLLAFYQDDPND----- 144
Query: 279 EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGN--- 335
L L D A + +H + + W GN
Sbjct: 145 -PFRSLWLYLAEQKL-DEKQAKEVLKQHFEKSDKE---------QWGWNIVEFYLGNISE 193
Query: 336 ---HEKALYFATKHLEI 349
E+ AT + +
Sbjct: 194 QTLMERLKADATDNTSL 210
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 91.7 bits (228), Expect = 2e-21
Identities = 39/245 (15%), Positives = 78/245 (31%), Gaps = 56/245 (22%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTL----------ARNMEDKLGEAKSSGNLGNTLKV 112
Q +A G +A+ Y +Q + L ++ +K + L K
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66
Query: 113 MGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEV 172
YD+A + K L+ + D L + +G+
Sbjct: 67 NRNYDKAYLFYKELLQKAPNNVD------CLEACAEMQVCRGQ----------------- 103
Query: 173 KVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGN-FKQAIYYHQERLKIAR 231
++A++ YE+ L ++ A LGN YYL K+ + ++L
Sbjct: 104 ---EKDALRMYEKIL----QLEADNLA--ANIFLGNYYYLTAEQEKKKLETDYKKLSSPT 154
Query: 232 EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYT 291
+ A G S +F Y+ A ++ ++ +A +L
Sbjct: 155 KMQY------ARYRDGLSKLFTTRYEKARNSLQKVILRFPS-------TEAQKTLDKILR 201
Query: 292 LLRDY 296
+ ++
Sbjct: 202 IEKEV 206
Score = 77.9 bits (192), Expect = 2e-16
Identities = 26/209 (12%), Positives = 55/209 (26%), Gaps = 49/209 (23%)
Query: 105 NLGNTLKVMGKYDEAMVCCKRHLEI----------SRQLNDKLSEGRALYNLGNVYHAKG 154
+ G+ +A+ ++ + + + + + L Y
Sbjct: 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68
Query: 155 KAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLG 214
+A +Y++ L K N+ G
Sbjct: 69 N--------------------YDKAYLFYKE--LLQKAPNNVDCLE----ACAEMQVCRG 102
Query: 215 NFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGE-YQAASEHYKRTLVLAQDL 273
K A+ +++ L++ + AN LGN + E + E + L +
Sbjct: 103 QEKDALRMYEKILQLEADNLA------ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM 156
Query: 274 GDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
A Y G + Y A +
Sbjct: 157 ------QYARYRDGLSKLFTTRYEKARNS 179
Score = 77.5 bits (191), Expect = 2e-16
Identities = 37/246 (15%), Positives = 71/246 (28%), Gaps = 56/246 (22%)
Query: 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDD------------LRTLSAIYSQLGNAYF 71
E+ + +AG V++F+ I D S + ++L AY
Sbjct: 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK 65
Query: 72 YLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131
+Y KA ++K+ L A N D L G+ +A+ ++ L++
Sbjct: 66 KNRNYDKAYLFYKELLQKAPNNVDCLE------ACAEMQVCRGQEKDALRMYEKILQLEA 119
Query: 132 QLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMK 191
A LGN Y+ + ++ ++ + L
Sbjct: 120 DNLA------ANIFLGNYYYLTAEQE-------------------KKKLETDYKKL---- 150
Query: 192 EINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHI 251
R G + +++A Q+ + + E A L
Sbjct: 151 SSPTKMQYARY--RDGLSKLFTTRYEKARNSLQKVILR-----FPSTE--AQKTLDKILR 201
Query: 252 FLGEYQ 257
E
Sbjct: 202 IEKEVN 207
Score = 72.9 bits (179), Expect = 7e-15
Identities = 32/219 (14%), Positives = 62/219 (28%), Gaps = 49/219 (22%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL----------MK 191
+ + G+ +A+ Y+ Q +AL
Sbjct: 6 EMLQKVSAAIEAGQ--------------------NGQAVSYFRQTIALNIDRTEMYYWTN 45
Query: 192 EINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHI 251
++ + L Y N+ +A +++E L+ A D +
Sbjct: 46 VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVD------CLEACAEMQV 99
Query: 252 FLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY-TLLRDYPTAIDYHLRHLIIA 310
G+ + A Y++ L L D A LGN Y ++ + L
Sbjct: 100 CRGQEKDALRMYEKILQLEADN------LAANIFLGNYYYLTAEQEKKKLETDYKKLSSP 153
Query: 311 QQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
++ A + G + +EKA K +
Sbjct: 154 TKMQY------ARYRDGLSKLFTTRYEKARNSLQKVILR 186
Score = 35.5 bits (82), Expect = 0.028
Identities = 11/99 (11%), Positives = 29/99 (29%), Gaps = 17/99 (17%)
Query: 20 NMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKA 79
+ L E+ K + + + T + G + + Y+KA
Sbjct: 127 FLGNYYYLTAEQEKKK------LETDYKKLSSPTKM----QYARYRDGLSKLFTTRYEKA 176
Query: 80 MQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDE 118
++ + + E + L L++ + +
Sbjct: 177 RNSLQKVILRFPSTE-------AQKTLDKILRIEKEVNR 208
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 92.3 bits (230), Expect = 2e-21
Identities = 41/253 (16%), Positives = 70/253 (27%), Gaps = 54/253 (21%)
Query: 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121
I +QL Y DY++A + L + + + D+A
Sbjct: 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKN------ELAWLVRAEIYQYLKVNDKAQE 63
Query: 122 CCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181
++ L I N G E++
Sbjct: 64 SFRQALSIKPDS------AEINNNYGWFL-----------CGRLNRP--------AESMA 98
Query: 182 YYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERR 241
Y+++ AL T A N G G F A Y + L +F
Sbjct: 99 YFDK--ALADPTYPTPYI--ANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP------ 148
Query: 242 ANSNLGNSHIFLGEYQAASEHYKR-----------TLVLAQDLGDRAVEAQACYSLGNTY 290
A L + + G+ A ++K+ L+L + AQA Y
Sbjct: 149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEA-- 206
Query: 291 TLLRDYPTAIDYH 303
L ++P + +
Sbjct: 207 QLQANFPYSEELQ 219
Score = 60.7 bits (148), Expect = 1e-10
Identities = 30/213 (14%), Positives = 49/213 (23%), Gaps = 43/213 (20%)
Query: 141 RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQG 200
L Y ++A E AL + +
Sbjct: 9 NIKTQLAMEYMRGQD--------------------YRQATASIED--AL--KSDPKNEL- 43
Query: 201 RACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIF-LGEYQAA 259
A Y L +A ++ L I + + N+N G L +
Sbjct: 44 -AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE------INNNYGWFLCGRLNRPAES 96
Query: 260 SEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 319
++ + L A + G + A Y R L Q
Sbjct: 97 MAYFDKAL----ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP---- 148
Query: 320 GRACWSLGNAHAARGNHEKALYFATKHLEISKQ 352
A L G A Y+ K+ +
Sbjct: 149 --AFKELARTKMLAGQLGDADYYFKKYQSRVEV 179
Score = 43.4 bits (103), Expect = 8e-05
Identities = 20/116 (17%), Positives = 34/116 (29%), Gaps = 13/116 (11%)
Query: 42 VAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101
+A+F A+ T ++ G G + A Y K+ L
Sbjct: 97 MAYFDKALADPTYPTPYIA--NLNKGICSAKQGQFGLAEAYLKRSLAAQPQF------PP 148
Query: 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAI 157
+ L T + G+ +A K++ L L + A G A
Sbjct: 149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA-----DDLLLGWKIAKALGNAQ 199
Score = 39.2 bits (92), Expect = 0.002
Identities = 8/71 (11%), Positives = 21/71 (29%), Gaps = 8/71 (11%)
Query: 235 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR 294
++ + + L ++ +Y+ A+ + L A Y L+
Sbjct: 5 NQVSN--IKTQLAMEYMRGQDYRQATASIEDALKSDPKN------ELAWLVRAEIYQYLK 56
Query: 295 DYPTAIDYHLR 305
A + +
Sbjct: 57 VNDKAQESFRQ 67
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 94.0 bits (234), Expect = 6e-21
Identities = 51/332 (15%), Positives = 98/332 (29%), Gaps = 73/332 (21%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ G GD + + + + ++ D A++ LG T A+V
Sbjct: 68 AFEEGLKRLKEGDLPVTILFMEA--AILQDPGD----AEAWQFLGITQAENENEQAAIVA 121
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
+R LE+ AL L Y Q+A +
Sbjct: 122 LQRCLELQPNNLK------ALMALAVSYTNTSH--------------------QQDACEA 155
Query: 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRA 242
+ + + N N + L ++ L+ +E +AA +
Sbjct: 156 LKN--WI--KQNPKYKY--LVKNKKGSPGLTRRMSKSP-VDSSVLEGVKELYLEAAHQNG 208
Query: 243 N-------SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD 295
+ + LG GE+ A + + L + + LG T
Sbjct: 209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED------YSLWNRLGATLANGDR 262
Query: 296 YPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKAL--------------- 340
A++ + R L I + R+ ++LG + G + +A+
Sbjct: 263 SEEAVEAYTRALEIQPGFI------RSRYNLGISCINLGAYREAVSNFLTALSLQRKSRN 316
Query: 341 YFATKHLEISKQLGDPLGQVTAQMNVTDLRKA 372
H IS + L + M+ +L +A
Sbjct: 317 QQQVPHPAISGNIWAALRIALSLMDQPELFQA 348
Score = 85.1 bits (211), Expect = 4e-18
Identities = 46/273 (16%), Positives = 84/273 (30%), Gaps = 49/273 (17%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
G + + +A + Q ++ ++L+ L A L +Y Q A + K +
Sbjct: 106 GITQAENENEQAAIVALQRCLELQPNNLKALMA----LAVSYTNTSHQQDACEALKNWIK 161
Query: 89 LARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR------QLNDKLSEGRA 142
K N + + + ++ V + N + +
Sbjct: 162 Q----NPKYKYLVK--NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDL 215
Query: 143 LYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRA 202
LG ++H G+ AI + AL +
Sbjct: 216 QTGLGVLFHLSGE--------------------FNRAIDAFNA--AL--TVRPEDYS--L 249
Query: 203 CGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEH 262
LG T ++A+ + L+I F R+ NLG S I LG Y+ A +
Sbjct: 250 WNRLGATLANGDRSEEAVEAYTRALEIQPGFI------RSRYNLGISCINLGAYREAVSN 303
Query: 263 YKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD 295
+ L L + + + GN + LR
Sbjct: 304 FLTALSLQRKSRN-QQQVPHPAISGNIWAALRI 335
Score = 66.2 bits (162), Expect = 8e-12
Identities = 36/225 (16%), Positives = 65/225 (28%), Gaps = 39/225 (17%)
Query: 19 GNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQK 78
+ + + A D + + + LG + G++ +
Sbjct: 174 KGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID--PDLQTGLGVLFHLSGEFNR 231
Query: 79 AMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLS 138
A+ LT+ + LG TL + +EA+ R LEI +
Sbjct: 232 AIDAFNAALTVRPE------DYSLWNRLGATLANGDRSEEAVEAYTRALEI------QPG 279
Query: 139 EGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAA 198
R+ YNLG G +EA+ + AL + +
Sbjct: 280 FIRSRYNLGISCINLGA--------------------YREAVSNFLT--AL--SLQRKSR 315
Query: 199 QGRACGNLGNTYYLLGNFKQAI-YYHQERLKIAREFGDKAAERRA 242
+ + + + + A+ Q L A GD RA
Sbjct: 316 NQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRA 360
Score = 58.5 bits (142), Expect = 2e-09
Identities = 24/238 (10%), Positives = 56/238 (23%), Gaps = 46/238 (19%)
Query: 114 GKYDEAMVCCKRHLEISRQLNDKLSE--GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEE 171
+++ A + E ++ + E R + +
Sbjct: 3 MEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVT---------------- 46
Query: 172 VKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAR 231
+ + K Y + G G+ I + + +
Sbjct: 47 ----VSASEKGYY------FHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP 96
Query: 232 EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYT 291
+ A LG + QAA +R L L + +A +L +YT
Sbjct: 97 GDAE------AWQFLGITQAENENEQAAIVALQRCLELQPNN------LKALMALAVSYT 144
Query: 292 LLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
A + + + + + K+ ++ +
Sbjct: 145 NTSHQQDACEALKNWIKQNPKYKY------LVKNKKGSPGLTRRMSKSPVDSSVLEGV 196
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 93.9 bits (234), Expect = 6e-21
Identities = 55/330 (16%), Positives = 95/330 (28%), Gaps = 48/330 (14%)
Query: 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDL 87
EG R + GD V F+AA+Q + LG A+ ++ L
Sbjct: 70 EGLRRLQEGDLPNAVLLFEAAVQQDPKH----MEAWQYLGTTQAENEQELLAISALRRCL 125
Query: 88 TLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEIS---RQLNDKLSEGRALY 144
L + + L L + +A + L + L EG
Sbjct: 126 ELKPDNQTALM------ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA 179
Query: 145 NLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACG 204
LG G + E + + + L D Q
Sbjct: 180 GLGPSKRILGSLLSDSL--------------FLEVKELFLAAVRLDPTSIDPDVQC---- 221
Query: 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYK 264
LG + L G + +A+ L + + LG + + + A Y+
Sbjct: 222 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYL------LWNKLGATLANGNQSEEAVAAYR 275
Query: 265 RTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII----AQQLMDRVGEG 320
R L L ++ Y+LG + L + A+++ L L + +
Sbjct: 276 RALELQPGY------IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329
Query: 321 RACWS-LGNAHAARGNHEKALYFATKHLEI 349
WS L A + G + + L
Sbjct: 330 ENIWSTLRLALSMLGQSDAYGAADARDLST 359
Score = 90.9 bits (226), Expect = 6e-20
Identities = 46/312 (14%), Positives = 87/312 (27%), Gaps = 59/312 (18%)
Query: 39 RAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLG 98
A + Q ++ + G GD A+ + + ++ +
Sbjct: 43 DLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEA--AVQQDPKH--- 97
Query: 99 EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIG 158
++ LG T + A+ +R LE+ AL L + +
Sbjct: 98 -MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT------ALMALAVSFTNESL--- 147
Query: 159 KVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL---MKEINDTAAQGRACGNLGNTYYLLGN 215
++A + L + A +G LG + +LG+
Sbjct: 148 -----------------QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS 190
Query: 216 FKQAIYYHQERLKIAREFGDKAAERRAN-------SNLGNSHIFLGEYQAASEHYKRTLV 268
+E A LG GEY A + + L
Sbjct: 191 LLS-----DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245
Query: 269 LAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGN 328
+ + LG T A+ + R L + + G R+ ++LG
Sbjct: 246 VRPND------YLLWNKLGATLANGNQSEEAVAAYRRALEL------QPGYIRSRYNLGI 293
Query: 329 AHAARGNHEKAL 340
+ G H +A+
Sbjct: 294 SCINLGAHREAV 305
Score = 75.5 bits (186), Expect = 8e-15
Identities = 39/275 (14%), Positives = 76/275 (27%), Gaps = 48/275 (17%)
Query: 75 DYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLN 134
++++A + D+ ++ +L E + YD+ +
Sbjct: 2 EFERAKSAIESDVDFWDKLQAELEEMAK--RDAEAHPWLSDYDDLTSATYD-KGYQFEEE 58
Query: 135 DKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIN 194
+ L + + G +G L A+ +E A+ ++
Sbjct: 59 NPLRDHPQPFEEGLRRLQEGD--------------------LPNAVLLFEA--AVQQDPK 96
Query: 195 DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG 254
A LG T AI + L++ + A L S
Sbjct: 97 HM----EAWQYLGTTQAENEQELLAISALRRCLELKPDNQT------ALMALAVSFTNES 146
Query: 255 EYQAASEHYKRTLVLA---QDLGDRAVEAQACYSLGNTYTLL------RDYPTAIDYHLR 305
+ A E + L L A E LG + +L + + L
Sbjct: 147 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLA 206
Query: 306 HLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKAL 340
+ + +D LG G ++KA+
Sbjct: 207 AVRLDPTSID----PDVQCGLGVLFNLSGEYDKAV 237
Score = 69.7 bits (171), Expect = 6e-13
Identities = 33/179 (18%), Positives = 57/179 (31%), Gaps = 38/179 (21%)
Query: 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121
+ LG + G+Y KA+ L++ N + LG TL + +EA+
Sbjct: 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPN------DYLLWNKLGATLANGNQSEEAVA 272
Query: 122 CCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181
+R LE+ + R+ YNLG G +EA++
Sbjct: 273 AYRRALEL------QPGYIRSRYNLGISCINLGA--------------------HREAVE 306
Query: 182 YYEQNLALMKE-----INDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAR-EFG 234
++ + L + ++ A L +LG L FG
Sbjct: 307 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG 365
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 92.7 bits (231), Expect = 8e-21
Identities = 34/287 (11%), Positives = 77/287 (26%), Gaps = 59/287 (20%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ G + L + +A + E ++ +LG T K A++
Sbjct: 24 PMEEGLSMLKLANLAEAALAFEA--VCQAAPER----EEAWRSLGLTQAENEKDGLAIIA 77
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
+ + K L + + A+
Sbjct: 78 LNHARML----DPKDIA--VHAALAVSHTNEHN--------------------ANAALAS 111
Query: 183 YEQNLAL---------MKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREF 233
L + D + + +++ L++
Sbjct: 112 LRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND 171
Query: 234 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL 293
+++LG + Y +A+ + +R + L D AQ LG T
Sbjct: 172 AQ------LHASLGVLYNLSNNYDSAAANLRRAVELRPDD------AQLWNKLGATLANG 219
Query: 294 RDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKAL 340
A+D + R L I + R +++ +++ ++ A
Sbjct: 220 NRPQEALDAYNRALDINPGYV------RVMYNMAVSYSNMSQYDLAA 260
Score = 87.7 bits (218), Expect = 4e-19
Identities = 33/294 (11%), Positives = 75/294 (25%), Gaps = 57/294 (19%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
G + + A D+ A+++ L ++ + A+ + L
Sbjct: 62 GLTQAENEKDGLAIIALNHARMLDPKDI----AVHAALAVSHTNEHNANAALASLRAWLL 117
Query: 89 L---------ARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139
D + + + +Y E LE++
Sbjct: 118 SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQ---- 173
Query: 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQ 199
+LG +Y+ A + A+ E+ AQ
Sbjct: 174 --LHASLGVLYNLSNN--------------------YDSAAANLRR--AV--ELRPDDAQ 207
Query: 200 GRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAA 259
LG T ++A+ + L I + R N+ S+ + +Y A
Sbjct: 208 --LWNKLGATLANGNRPQEALDAYNRALDINPGYV------RVMYNMAVSYSNMSQYDLA 259
Query: 260 SEHYKRTLVL------AQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 307
++ R + + R ++ + +++
Sbjct: 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313
Score = 68.5 bits (168), Expect = 1e-12
Identities = 36/231 (15%), Positives = 71/231 (30%), Gaps = 43/231 (18%)
Query: 11 SQSGGADGGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAY 70
S + AD L + E + R AA++ +D + +++ LG Y
Sbjct: 127 SVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND----AQLHASLGVLY 182
Query: 71 FYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEIS 130
+Y A ++ + L + +A+ LG TL + EA+ R L+I
Sbjct: 183 NLSNNYDSAAANLRRAVELRPD------DAQLWNKLGATLANGNRPQEALDAYNRALDI- 235
Query: 131 RQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190
R +YN+ Y + A K + + +
Sbjct: 236 -----NPGYVRVMYNMAVSYSNMSQ--------------------YDLAAKQLVRAIYMQ 270
Query: 191 KE-----INDTAAQGRAC-GNLGNTYYLLGNFKQAIYYHQERLKI-AREFG 234
+ R+ ++ + + ++ A+EFG
Sbjct: 271 VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG 321
Score = 61.9 bits (151), Expect = 1e-10
Identities = 27/222 (12%), Positives = 48/222 (21%), Gaps = 47/222 (21%)
Query: 128 EISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNL 187
+ + N+ G L EA +E
Sbjct: 9 DYPFEANNPYMYHENPMEEGLSMLKLAN--------------------LAEAALAFEA-- 46
Query: 188 ALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLG 247
+ + A +LG T AI + + ++ L
Sbjct: 47 VC--QAAPEREE--AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA------VHAALA 96
Query: 248 NSHIFLGEYQAASEHYKRTLVL---------AQDLGDRAVEAQACYSLGNTYTLLRDYPT 298
SH AA + L+ D ++ S + +Y
Sbjct: 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRE 156
Query: 299 AIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKAL 340
L + SLG + N++ A
Sbjct: 157 CRTLLHAALEMNPNDAQ------LHASLGVLYNLSNNYDSAA 192
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 94.8 bits (236), Expect = 9e-21
Identities = 42/387 (10%), Positives = 107/387 (27%), Gaps = 85/387 (21%)
Query: 34 KAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFY--------LGDYQKAMQYHKQ 85
A + + +A + + LS +Y + +Y +++ + + +
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228
Query: 86 DLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYN 145
D L + L + G + A K+ +E+ ++N +
Sbjct: 229 DEKLKEKLAISLE------HTGIFKFLKNDPLGAHEDIKKAIELFPRVN-------SYIY 275
Query: 146 LGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGN 205
+ + + E Y+++ AL +++ + +
Sbjct: 276 MALIMADRND--------------------STEYYNYFDK--AL--KLDSNNSS--VYYH 309
Query: 206 LGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR 265
G ++L N+ QA + ++ E L ++ +
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAKELDPENIF------PYIQLACLAYRENKFDDCETLFSE 363
Query: 266 TLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD---RVGEGRA 322
+ + T D+ A+ + + + +L +
Sbjct: 364 AKRKFPEA------PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVG 417
Query: 323 CWSLGNAHAARGNHEKALYFATKHLEISKQLGDP--------LGQVTAQMN-----VTDL 369
+L + N +A K ++ DP L Q+ Q +T
Sbjct: 418 KATLLTRNPTVENFIEATNLLEKASKL-----DPRSEQAKIGLAQMKLQQEDIDEAITLF 472
Query: 370 RKALGMSTNDLSPDSLQLINSYANANQ 396
++ DL+ + + + A
Sbjct: 473 EESA-----DLARTMEEKLQAITFAEA 494
Score = 89.8 bits (223), Expect = 4e-19
Identities = 33/275 (12%), Positives = 73/275 (26%), Gaps = 58/275 (21%)
Query: 32 LCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLAR 91
+ D +F A++ +++ S++Y G F L +Y +A + + L
Sbjct: 280 MADRNDSTEYYNYFDKALKLDSNN----SSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335
Query: 92 NMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYH 151
L K+D+ + E +
Sbjct: 336 E------NIFPYIQLACLAYRENKFDDCETLFSEAKRK----FPEAPE--VPNFFAEILT 383
Query: 152 AKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTY- 210
K +A+K Y+ A+ E+ + +
Sbjct: 384 DKND--------------------FDKALKQYDL--AI--ELENKLD--GIYVGIAPLVG 417
Query: 211 --------YLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEH 262
+ NF +A ++ K+ A L + + A
Sbjct: 418 KATLLTRNPTVENFIEATNLLEKASKLDPRSEQ------AKIGLAQMKLQQEDIDEAITL 471
Query: 263 YKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP 297
++ + LA+ + + ++A +R P
Sbjct: 472 FEESADLARTMEE-KLQAITFAEAAKVQQRIRSDP 505
Score = 80.9 bits (200), Expect = 3e-16
Identities = 34/342 (9%), Positives = 82/342 (23%), Gaps = 71/342 (20%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ +A LG + AM L+ N + + + M K E
Sbjct: 76 LLRRASANEGLGKFADAMFDLSV---LSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGD 132
Query: 123 CKRHLEISRQLNDKLSEGR-------ALYNLGNVYHAKG--------------------K 155
+L+ + ++ R +
Sbjct: 133 IDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMN 192
Query: 156 AIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNL-ALMKEINDTAAQGRACGNLGNTYYLLG 214
+ + ++ P Y + + +A + +E+ L ++ + + G +L
Sbjct: 193 GLSNLYKRSPESYDKADE-SFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251
Query: 215 NFKQAI----------------------YYHQERLKIAREFGDKAAERRANS-----NLG 247
+ A + + DKA + +N+ + G
Sbjct: 252 DPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRG 311
Query: 248 NSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 307
+ L Y A + + + L + L +
Sbjct: 312 QMNFILQNYDQAGKDFDKAKELDPEN------IFPYIQLACLAYRENKFDDCETLFSEAK 365
Query: 308 IIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
+ + + + +KAL +E+
Sbjct: 366 RKFPEAPE------VPNFFAEILTDKNDFDKALKQYDLAIEL 401
Score = 76.3 bits (188), Expect = 7e-15
Identities = 51/365 (13%), Positives = 105/365 (28%), Gaps = 59/365 (16%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
GN +F Y A++Y+ L L + NL +G + +
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKED-------PVFYSNLSACYVSVGDLKKVVEM 61
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK---AIG--KVGQQDPGEYPEEVKV--- 174
+ LE+ S+ L + GK A+ V + ++
Sbjct: 62 STKALEL----KPDYSK--VLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE 115
Query: 175 ---------CLQEAIKYYEQNLALMKEINDTAAQGR-------ACGNLGNTYYLLGNFKQ 218
L+E + A E++ A+ R +++ + +
Sbjct: 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPEL 175
Query: 219 AIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTL-VLAQDLGDRA 277
+ E + +E + + + A+ ++ L +D +
Sbjct: 176 TFANYDESNEADKEL-MNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE 234
Query: 278 VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHE 337
A + G L D A + + A +L RV + + A R +
Sbjct: 235 KLAISLEHTGIFKFLKNDPLGAHE----DIKKAIELFPRV---NSYIYMALIMADRNDST 287
Query: 338 KALYFATKHLEISKQLGDP---LGQVTAQMN-----VTDLRKALGMSTNDLSPDSLQLIN 389
+ + K L++ GQ+ + D KA +L P+++
Sbjct: 288 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK-----ELDPENIFPYI 342
Query: 390 SYANA 394
A
Sbjct: 343 QLACL 347
Score = 56.7 bits (137), Expect = 1e-08
Identities = 31/220 (14%), Positives = 60/220 (27%), Gaps = 37/220 (16%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
AL + GN + K +AIKYY AL E+ +
Sbjct: 8 ALKDKGNQFFRNKK--------------------YDDAIKYYNW--AL--ELKEDPV--- 40
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
NL Y +G+ K+ + + L++ ++ +++ LG++ A
Sbjct: 41 FYSNLSACYVSVGDLKKVVEMSTKALELKPDYSK------VLLRRASANEGLGKFADAMF 94
Query: 262 HYKRTLVL----AQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRV 317
+ + ++ D TA +
Sbjct: 95 DLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK 154
Query: 318 GEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPL 357
E + + E + E K+L + L
Sbjct: 155 QENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194
Score = 43.6 bits (103), Expect = 1e-04
Identities = 19/179 (10%), Positives = 35/179 (19%), Gaps = 54/179 (30%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQ------- 81
+ F A + + + + D+ KA++
Sbjct: 345 ACLAYRENKFDDCETLFSEAKRKFPEA----PEVPNFFAEILTDKNDFDKALKQYDLAIE 400
Query: 82 ---------------YHKQDLTLARNMEDKLGEAKSS---------------GNLGNTLK 111
K L + EA + L
Sbjct: 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKL 460
Query: 112 VMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPE 170
DEA+ + +++R + A A QQ P
Sbjct: 461 QQEDIDEAITLFEESADLAR-------------TMEEKLQAITFAEAAKVQQRIRSDPV 506
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 93.9 bits (233), Expect = 2e-20
Identities = 54/369 (14%), Positives = 111/369 (30%), Gaps = 60/369 (16%)
Query: 62 IYSQLGNAYFYLGDY-QKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAM 120
G A DY +A + + L + + + LG G A
Sbjct: 104 ALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE------AWNQLGEVYWKKGDVTSAH 157
Query: 121 VCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAI 180
C L + N +L NL V + +E + +++
Sbjct: 158 TCFSGALTHCK--NKV-----SLQNLSMVLRQLQT-----------DSGDEHSRHVMDSV 199
Query: 181 KYYEQNLALMKEINDTAAQGRACGNLGNTYYL--------LGNFKQAIYYHQERLKIARE 232
+ + + + ++ D GR+ LGN Y +QA+ + + K+ R+
Sbjct: 200 RQAKLAVQM--DVLD----GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK 253
Query: 233 FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL 292
+ N H + Y A E + + L +
Sbjct: 254 ASSNP---DLHLNRATLHKYEESYGEALEGFSQAAALDPAW------PEPQQREQQLLEF 304
Query: 293 LRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQ 352
L + ++ + ++L +G SL AH + + + + + +
Sbjct: 305 LSRLTSLLESKGK--TKPKKLQSMLG------SLRPAHLGPCGDGRYQSASGQKMTLELK 356
Query: 353 LGDPLGQVTAQMNVTDLRKALGMSTNDLSPDSLQLINSYANANQPSPGVRRYNRVRRSSM 412
L V + ++T + P + L++S + P V YN V+ +
Sbjct: 357 PLSTLQPGVNSGTVVLGKVVFSLTTEEKVPFTFGLVDS----DGPCYAVMVYNVVQSWGV 412
Query: 413 EQLDLIKLT 421
D + +
Sbjct: 413 LIGDSVAIP 421
Score = 69.3 bits (169), Expect = 1e-12
Identities = 31/312 (9%), Positives = 77/312 (24%), Gaps = 67/312 (21%)
Query: 65 QLGNAYFYLGDYQKAMQYHK---QDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121
+ + + +Q + L R+ + + +G ++ + ++ +
Sbjct: 32 RGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQ--EEMEKTLQ 89
Query: 122 CCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK-------AIGKVGQQDPGEYPE---- 170
+ L ++ AL G + + K + +P E E
Sbjct: 90 QMEEVLGSAQVEAQ------ALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQ 142
Query: 171 -----EVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLG---------NF 216
K + A + AL N + Q NL L +
Sbjct: 143 LGEVYWKKGDVTSAHTCFSG--ALTHCKNKVSLQ-----NLSMVLRQLQTDSGDEHSRHV 195
Query: 217 KQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIF--------LGEYQAASEHYKRTLV 268
++ + +++ G + LGN+++ Q A Y +
Sbjct: 196 MDSVRQAKLAVQMDVLDGR------SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK 249
Query: 269 LAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGN 328
+ + + + Y A++ + + +
Sbjct: 250 VDRKASS---NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE------PQQREQQ 300
Query: 329 AHAARGNHEKAL 340
L
Sbjct: 301 LLEFLSRLTSLL 312
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 92.7 bits (230), Expect = 2e-20
Identities = 40/335 (11%), Positives = 87/335 (25%), Gaps = 29/335 (8%)
Query: 25 LALEGERLCKAGDCRAGVAFFQAAIQA-GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYH 83
AL + G+ + A++ + S LG G+ +++
Sbjct: 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALM 76
Query: 84 KQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE--GR 141
+Q +AR + S L G A ++ ++ + + +
Sbjct: 77 QQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF 136
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
+ + A + L EA + ++
Sbjct: 137 LVRIRAQLLWAWAR--------------------LDEAEASARSGIEVLSSYQPQQQLQC 176
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL--GEYQAA 259
L G+ A + G ++ +N+N + G+ AA
Sbjct: 177 LA-MLIQCSLARGDLDNARSQLNRLENLLGN-GKYHSDWISNANKVRVIYWQMTGDKAAA 234
Query: 260 SEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 319
+ + T + ++ LL ++ A A+ L
Sbjct: 235 ANWLRHTAKPEFA--NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL 292
Query: 320 GRACWSLGNAHAARGNHEKALYFATKHLEISKQLG 354
R L + G A L+++ + G
Sbjct: 293 NRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 327
Score = 90.0 bits (223), Expect = 1e-19
Identities = 36/302 (11%), Positives = 80/302 (26%), Gaps = 25/302 (8%)
Query: 66 LGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKR 125
G+ +A + K L ++ LG L G+ ++ ++
Sbjct: 20 RAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQ 78
Query: 126 HLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185
+++RQ + +L + A+G LQ A + E+
Sbjct: 79 TEQMARQHDVWHYALWSLIQQSEILFAQGF--------------------LQTAWETQEK 118
Query: 186 NLALMKEI--NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRAN 243
L+ E + +A + +++ + + +
Sbjct: 119 AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178
Query: 244 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 303
L + G+ A R L + + + Y + A
Sbjct: 179 -MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW 237
Query: 304 LRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQ 363
LRH + + + ++ A G E A + E ++ L
Sbjct: 238 LRHTAKPEFANNHFLQ-GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296
Query: 364 MN 365
+
Sbjct: 297 LL 298
Score = 75.0 bits (184), Expect = 1e-14
Identities = 22/193 (11%), Positives = 49/193 (25%), Gaps = 4/193 (2%)
Query: 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD 235
EA + + L + ++ A LG + G +++ Q+ ++AR+
Sbjct: 30 PDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 88
Query: 236 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQA--CYSLGNTYTLL 293
+ G Q A E ++ L + +
Sbjct: 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW 148
Query: 294 RDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQL 353
A + + + L ARG+ + A + +
Sbjct: 149 ARLDEAEASARSGIEVLSSYQPQQQLQCLAM-LIQCSLARGDLDNARSQLNRLENLLGNG 207
Query: 354 GDPLGQVTAQMNV 366
++ V
Sbjct: 208 KYHSDWISNANKV 220
Score = 35.7 bits (82), Expect = 0.037
Identities = 12/105 (11%), Positives = 32/105 (30%), Gaps = 1/105 (0%)
Query: 270 AQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNA 329
+D+ + + A+ + A L A LG
Sbjct: 4 IKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS-RIVATSVLGEV 62
Query: 330 HAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALG 374
+G ++L + ++++Q + + + +++ A G
Sbjct: 63 LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG 107
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 92.9 bits (231), Expect = 4e-20
Identities = 42/348 (12%), Positives = 82/348 (23%), Gaps = 72/348 (20%)
Query: 42 VAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101
+ A + G L Q+ + Q L +
Sbjct: 194 LPVLCQAHGLTPQQ----VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ------QVV 243
Query: 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVG 161
+ + G + + + + ++ Q A+ + A
Sbjct: 244 AIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV------AIASNSGGKQALET------ 291
Query: 162 QQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIY 221
+Q + Q L T Q A + G L ++ +
Sbjct: 292 --------------VQRLLPVLCQAHGL------TPQQVVAIASNGGGKQALETVQRLL- 330
Query: 222 YHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQ 281
L A + A ++ L Q + L + +
Sbjct: 331 ---PVLCQAHGLTPQQVV--AIASHDGGKQALETVQRLLPVLCQAHGLTPE------QVV 379
Query: 282 ACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALY 341
A S G L + + + + + A S A ++ L
Sbjct: 380 AIASNGGGKQALETVQRLLPVLCQAHGLTPEQVV------AIASHDGGKQALETVQRLLP 433
Query: 342 FATKHLEISKQ-------LGDP---LGQVTAQMNVTDLRKALGMSTND 379
+ ++ Q G L + AQ++ AL TND
Sbjct: 434 VLCQAHGLTPQQVVAIASNGGGRPALESIVAQLS--RPDPALAALTND 479
Score = 75.6 bits (186), Expect = 1e-14
Identities = 35/300 (11%), Positives = 69/300 (23%), Gaps = 63/300 (21%)
Query: 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQD 164
+ + + + + ++ Q A+ + A
Sbjct: 77 SHDGGKQALETVQRLLPVLCQAHGLTPQQVV------AIASHDGGKQALET--------- 121
Query: 165 PGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQ 224
+Q + Q L T Q A + L + +
Sbjct: 122 -----------VQRLLPVLCQAHGL------TPEQVVAIASHDGGKQALETVQALLPVLC 164
Query: 225 ERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 284
+ + E A ++ G L Q + L + A
Sbjct: 165 QAHGLTPEQVV------AIASNGGGKQALETVQRLLPVLCQAHGLTPQ------QVVAIA 212
Query: 285 SLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFAT 344
S G L + + + Q + A S G A ++ L
Sbjct: 213 SNGGGKQALETVQRLLPVLCQAHGLTPQ------QVVAIASNGGGKQALETVQRLLPVLC 266
Query: 345 KHLEISKQLGDP---LGQVTAQMN-----VTDLRKALGMSTNDLSPDSLQLINSYANANQ 396
+ ++ Q + + L +A G L+P + I S Q
Sbjct: 267 QAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHG-----LTPQQVVAIASNGGGKQ 321
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 89.6 bits (223), Expect = 1e-19
Identities = 35/295 (11%), Positives = 78/295 (26%), Gaps = 45/295 (15%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ +LG G A+ + + + MGK A+
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPD------NYIAYYRRATVFLAMGKSKAALPD 59
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
+ + L + A G++ +GK +E + ++ +K
Sbjct: 60 LTKVIA----LKMDFTA--ARLQRGHLLLKQGK-------------LDEAEDDFKKVLKS 100
Query: 183 YEQNLALMKEINDT--AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAER 240
+ + A + + + + ++ AI + + L++ +
Sbjct: 101 NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAE----- 155
Query: 241 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 300
I GE + A K L D +A Y + Y L D+ ++
Sbjct: 156 -LRELRAECFIKEGEPRKAISDLKAASKLKSDN------TEAFYKISTLYYQLGDHELSL 208
Query: 301 DYHLRHLII------AQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
L + +V + G + A ++
Sbjct: 209 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263
Score = 88.5 bits (220), Expect = 4e-19
Identities = 52/380 (13%), Positives = 119/380 (31%), Gaps = 54/380 (14%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
G++L AG ++ F AA+ D+ Y + + +G + A+ + +
Sbjct: 10 GKKLLAAGQLADALSQFHAAVDGDPDN----YIAYYRRATVFLAMGKSKAALPDLTKVIA 65
Query: 89 LARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148
L + A+ G+ L GK DEA K+ L+ + ++ L
Sbjct: 66 L----KMDFTAARL--QRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE 119
Query: 149 VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGN 208
+ + +A+ D AI + ++ L E+ A+ R
Sbjct: 120 MQRLRSQALDAFDGAD-----------YTAAITFLDK--IL--EVCVWDAELRE--LRAE 162
Query: 209 TYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV 268
+ G ++AI + K+ + + A + + LG+++ + + L
Sbjct: 163 CFIKEGEPRKAISDLKAASKLKSDNTE------AFYKISTLYYQLGDHELSLSEVRECLK 216
Query: 269 LAQDLGD------RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRA 322
L QD + + Y A + + + + R+
Sbjct: 217 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYT--VRS 274
Query: 323 CWSLGNAHAARGNHEKALYFATKHLEISKQLGDPL---GQVTAQMN-----VTDLRKALG 374
+ + + +A+ ++ L++ + L + + D A
Sbjct: 275 KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQ- 333
Query: 375 MSTNDLSPDSLQLINSYANA 394
+ + + Q+ A
Sbjct: 334 ----EHNENDQQIREGLEKA 349
Score = 74.2 bits (183), Expect = 2e-14
Identities = 35/261 (13%), Positives = 72/261 (27%), Gaps = 53/261 (20%)
Query: 98 GEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAI 157
+ + LG L G+ +A+ ++ + A Y V+ A GK
Sbjct: 1 ADVEKHLELGKKLLAAGQLADALSQFHAAVD----GDPDNYI--AYYRRATVFLAMGK-- 52
Query: 158 GKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFK 217
+ A+ + + + A G+ G
Sbjct: 53 ------------------SKAALPDLTK--VI--ALKMDFTA--ARLQRGHLLLKQGKLD 88
Query: 218 QAIYYHQERLKI---------AREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV 268
+A ++ LK A KA E + + +Y AA + L
Sbjct: 89 EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE 148
Query: 269 LAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGN 328
+ +A+ + + AI + + A + +
Sbjct: 149 VCVW------DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE------AFYKIST 196
Query: 329 AHAARGNHEKALYFATKHLEI 349
+ G+HE +L + L++
Sbjct: 197 LYYQLGDHELSLSEVRECLKL 217
Score = 53.8 bits (130), Expect = 7e-08
Identities = 13/129 (10%), Positives = 36/129 (27%), Gaps = 12/129 (9%)
Query: 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDL 87
E L + G + +++ ++ ++ + + +A++ + L
Sbjct: 240 SAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299
Query: 88 TLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLG 147
+ E A + + YDEA+ + E + L
Sbjct: 300 QM----EPDNVNALK--DRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ------IREGLE 347
Query: 148 NVYHAKGKA 156
++
Sbjct: 348 KAQRLLKQS 356
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 87.4 bits (216), Expect = 3e-19
Identities = 31/269 (11%), Positives = 70/269 (26%), Gaps = 26/269 (9%)
Query: 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQY 82
+EL E+ F + + + + + Q Y + A
Sbjct: 5 VELLKRAEKKGVPSS-----GFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDS 59
Query: 83 HKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRA 142
+ + ++ + K G A+ + ++I
Sbjct: 60 FLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119
Query: 143 LYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRA 202
+ LG + + D +Y +AI YE + A +
Sbjct: 120 KFELGEIL-----------ENDLHDY--------AKAIDCYELAGEWYAQDQSVALSNKC 160
Query: 203 CGNLGNTYYLLGNFKQAI-YYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
+ L G + +A Y + + + + G + + AA+
Sbjct: 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTY 290
+ + D + E+ SL +
Sbjct: 221 TLQEGQSEDPNFAD-SRESNFLKSLIDAV 248
Score = 69.3 bits (169), Expect = 4e-13
Identities = 24/183 (13%), Positives = 47/183 (25%), Gaps = 2/183 (1%)
Query: 175 CLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFG 234
L A + + K+ + G + GN A+ + ++I G
Sbjct: 52 ELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG 111
Query: 235 DKAAERRANSNLGNSHIF-LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL 293
LG L +Y A + Y+ A+ + + L
Sbjct: 112 QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD 171
Query: 294 RDYPTAIDYHLRHLIIA-QQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQ 352
Y A D + + + + + + G A + A +
Sbjct: 172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231
Query: 353 LGD 355
D
Sbjct: 232 FAD 234
Score = 48.1 bits (114), Expect = 4e-06
Identities = 17/141 (12%), Positives = 36/141 (25%), Gaps = 3/141 (2%)
Query: 235 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR 294
++AA+ + E A + + + + G+ +
Sbjct: 34 EEAAD--LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG 91
Query: 295 DYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAH-AARGNHEKALYFATKHLEISKQL 353
+ A+D + I + LG ++ KA+ E Q
Sbjct: 92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD 151
Query: 354 GDPLGQVTAQMNVTDLRKALG 374
+ DL+ G
Sbjct: 152 QSVALSNKCFIKCADLKALDG 172
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 82.8 bits (206), Expect = 4e-19
Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 40/168 (23%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ LGNAY+ GDY +A++Y+++ L L A++ NLGN G YDEA+
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEY 57
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
++ LE+ + + +E A YNLGN Y+ +G EAI+Y
Sbjct: 58 YQKALEL----DPRSAE--AWYNLGNAYYKQGD--------------------YDEAIEY 91
Query: 183 YEQNLALMKEIN-DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKI 229
Y++ AL E++ +A A NLGN YY G++ +AI Y+Q+ L++
Sbjct: 92 YQK--AL--ELDPRSAE---AWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Score = 72.4 bits (179), Expect = 2e-15
Identities = 54/161 (33%), Positives = 80/161 (49%), Gaps = 38/161 (23%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
A YNLGN Y+ +G EAI+YY++ AL E++ +A+
Sbjct: 3 AWYNLGNAYYKQGD--------------------YDEAIEYYQK--AL--ELDPRSAE-- 36
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A NLGN YY G++ +AI Y+Q+ L++ + A NLGN++ G+Y A E
Sbjct: 37 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE------AWYNLGNAYYKQGDYDEAIE 90
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
+Y++ L L A+A Y+LGN Y DY AI+Y
Sbjct: 91 YYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEY 125
Score = 58.2 bits (142), Expect = 2e-10
Identities = 48/148 (32%), Positives = 81/148 (54%), Gaps = 18/148 (12%)
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A NLGN YY G++ +AI Y+Q+ L++ + A NLGN++ G+Y A E
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE------AWYNLGNAYYKQGDYDEAIE 56
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321
+Y++ L L A+A Y+LGN Y DY AI+Y+ + L + + +
Sbjct: 57 YYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE------ 104
Query: 322 ACWSLGNAHAARGNHEKALYFATKHLEI 349
A ++LGNA+ +G++++A+ + K LE+
Sbjct: 105 AWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Score = 28.1 bits (64), Expect = 3.6
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
Query: 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKA 339
A+A Y+LGN Y DY AI+Y+ + L + + + A ++LGNA+ +G++++A
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE------AWYNLGNAYYKQGDYDEA 54
Query: 340 LYFATKHLEI 349
+ + K LE+
Sbjct: 55 IEYYQKALEL 64
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 89.4 bits (222), Expect = 5e-19
Identities = 56/382 (14%), Positives = 121/382 (31%), Gaps = 54/382 (14%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
G++L AG ++ F AA+ D+ Y + + +G + A+ DLT
Sbjct: 33 GKKLLAAGQLADALSQFHAAVDGDPDN----YIAYYRRATVFLAMGKSKAALP----DLT 84
Query: 89 LARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148
++ A+ G+ L GK DEA K+ L+ + N++ L
Sbjct: 85 KVIQLKMDFTAARL--QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDE 142
Query: 149 VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGN 208
+ + +A+ G D AI + ++ L E+ A+ R
Sbjct: 143 MQRLRSQALNAFGSGD-----------YTAAIAFLDK--IL--EVCVWDAELRE--LRAE 185
Query: 209 TYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV 268
+ G ++AI + K+ + + A + + LG+++ + + L
Sbjct: 186 CFIKEGEPRKAISDLKAASKLKNDNTE------AFYKISTLYYQLGDHELSLSEVRECLK 239
Query: 269 LAQDLGD------RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRA 322
L QD + + Y A + + R+
Sbjct: 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS--IAEYTVRS 297
Query: 323 CWSLGNAHAARGNHEKALYFATKHLEISKQLGDPL---GQVTAQMN-----VTDLRKALG 374
+ + + +A+ ++ L++ + L + + D A
Sbjct: 298 KERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQ- 356
Query: 375 MSTNDLSPDSLQLINSYANANQ 396
+ + + Q+ A +
Sbjct: 357 ----EHNENDQQIREGLEKAQR 374
Score = 81.7 bits (202), Expect = 1e-16
Identities = 38/296 (12%), Positives = 82/296 (27%), Gaps = 70/296 (23%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ G Y ++M + + LG L G+ +A+
Sbjct: 6 HHSSGVDLGTENLYFQSMA-----------------DVEKHLELGKKLLAAGQLADALSQ 48
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
++ + A Y V+ A GK + A+
Sbjct: 49 FHAAVD----GDPDNYI--AYYRRATVFLAMGK--------------------SKAALPD 82
Query: 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKI---------AREF 233
+ + ++ R G+ G +A ++ LK A+
Sbjct: 83 LTK--VI--QLKMDFTAARL--QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ 136
Query: 234 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL 293
K+ E + + + G+Y AA + L + +A+ +
Sbjct: 137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW------DAELRELRAECFIKE 190
Query: 294 RDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
+ AI + + A + + + G+HE +L + L++
Sbjct: 191 GEPRKAISDLKAASKLKNDNTE------AFYKISTLYYQLGDHELSLSEVRECLKL 240
Score = 66.6 bits (163), Expect = 7e-12
Identities = 37/286 (12%), Positives = 84/286 (29%), Gaps = 47/286 (16%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKV-----CLQEAIKYYEQNLALMKEINDT 196
++ G + + D ++ E K L +A+ + A+ + +
Sbjct: 5 HHHSSGVDLGTENLYFQSM--ADVEKHLELGKKLLAAGQLADALSQFHA--AV--DGDPD 58
Query: 197 AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEY 256
A + +G K A+ + +++ +F A G+ + G+
Sbjct: 59 NYI--AYYRRATVFLAMGKSKAALPDLTKVIQLKMDFT------AARLQRGHLLLKQGKL 110
Query: 257 QAASEHYKRTLVL---------AQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 307
A + +K+ L AQ ++ E Q S DY AI + + L
Sbjct: 111 DEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170
Query: 308 IIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPL---GQVTAQM 364
+ + G KA+ ++ + + Q+
Sbjct: 171 EVCVW------DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL 224
Query: 365 N-----VTDLRKALGMSTNDLSPDSLQLINSYANANQPSPGVRRYN 405
++++R+ L L D + Y + + +
Sbjct: 225 GDHELSLSEVRECL-----KLDQDHKRCFAHYKQVKKLNKLIESAE 265
Score = 56.2 bits (136), Expect = 2e-08
Identities = 26/158 (16%), Positives = 45/158 (28%), Gaps = 34/158 (21%)
Query: 65 QLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCK 124
+ G Y A ++ + ++ + +K + + K EA+ C
Sbjct: 262 ESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKE--RICHCFSKDEKPVEAIRVCS 319
Query: 125 RHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYE 184
L+ + AL + Y + EAI+ YE
Sbjct: 320 EVLQ----MEPDNVN--ALKDRAEAYLIEEM--------------------YDEAIQDYE 353
Query: 185 QNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYY 222
A E N+ Q L LL ++ YY
Sbjct: 354 T--AQ--EHNENDQQ--IREGLEKAQRLLKQSQKRDYY 385
Score = 53.1 bits (128), Expect = 2e-07
Identities = 18/182 (9%), Positives = 53/182 (29%), Gaps = 27/182 (14%)
Query: 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDL 87
E L + G + +++ ++ ++ + + +A+ +
Sbjct: 263 SAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI----RVC 318
Query: 88 TLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLG 147
+ ME A + + YDEA+ + E + L
Sbjct: 319 SEVLQMEPDNVNALK--DRAEAYLIEEMYDEAIQDYETAQEHNENDQQ------IREGLE 370
Query: 148 NVYHAKGKAIGK-----VGQQDPGEYPEEVKVCLQEAIKYY----------EQNLALMKE 192
++ + +G + + E +K + A++++ ++ +
Sbjct: 371 KAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFID 430
Query: 193 IN 194
I
Sbjct: 431 IA 432
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 82.0 bits (202), Expect = 2e-16
Identities = 39/377 (10%), Positives = 87/377 (23%), Gaps = 75/377 (19%)
Query: 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQY 82
+++A G + A A + + + L Q+ +
Sbjct: 159 VKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVA----IASNNGGKQALETVQRLLPV 214
Query: 83 HKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRA 142
Q L + + + + + + + + A
Sbjct: 215 LCQAHGLTPA------QVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVV------A 262
Query: 143 LYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRA 202
+ + A +Q + Q L T Q A
Sbjct: 263 IASNIGGKQALET--------------------VQRLLPVLCQAHGL------TPDQVVA 296
Query: 203 CGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEH 262
+ G L ++ + + + + A ++ L Q
Sbjct: 297 IASHGGGKQALETVQRLLPVLCQAHGLTPDQVV------AIASHDGGKQALETVQRLLPV 350
Query: 263 YKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRA 322
+ L D + A S G L + + + + A
Sbjct: 351 LCQAHGLTPD------QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD------QVVA 398
Query: 323 CWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLSP 382
S G A ++ L + ++ QV A + ++AL
Sbjct: 399 IASNGGKQAL-ETVQRLLPVLCQAHGLTPD------QVVAIASHDGGKQALE-------- 443
Query: 383 DSLQLINSYANANQPSP 399
+L+ + +P
Sbjct: 444 TVQRLLPVLCQTHGLTP 460
Score = 73.1 bits (179), Expect = 2e-13
Identities = 33/316 (10%), Positives = 71/316 (22%), Gaps = 44/316 (13%)
Query: 39 RAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLG 98
G +Q L + A G Q + L +
Sbjct: 368 NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPD 427
Query: 99 EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK--- 155
+ + + + + + + ++ A+ + A
Sbjct: 428 QVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVV------AIASHDGGKQALETVQQ 481
Query: 156 AIGKVGQQDPGEYPEEVKVC-----------LQEAIKYYEQNLALMKEINDTAAQGRACG 204
+ + Q + V + +Q + Q L T Q A
Sbjct: 482 LLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGL------TPDQVVAIA 535
Query: 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYK 264
+ G L ++ + + + + A ++ G L Q
Sbjct: 536 SNGGGKQALETVQRLLPVLCQAHGLTPDQ------VVAIASNGGGKQALETVQRLLPVLC 589
Query: 265 RTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACW 324
+ L Q + A S L + ++ Q + A
Sbjct: 590 QAHGLTQV------QVVAIASNIGGKQALETVQRLLP------VLCQAHGLTPAQVVAIA 637
Query: 325 SLGNAHAARGNHEKAL 340
S A ++ L
Sbjct: 638 SHDGGKQALETVQRLL 653
Score = 68.9 bits (168), Expect = 3e-12
Identities = 34/337 (10%), Positives = 82/337 (24%), Gaps = 59/337 (17%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ L Q+ + Q + + + + + +
Sbjct: 602 IASNIGGKQALETVQRLLPVLCQAH------GLTPAQVVAIASHDGGKQALETVQRLLPV 655
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
+ ++ A+ + G A +Q +
Sbjct: 656 LCQAHGLTPDQVV------AIASNGGGKQALET--------------------VQRLLPV 689
Query: 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRA 242
Q L T Q A + L ++ + + + + A
Sbjct: 690 LCQAHGL------TQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVV------A 737
Query: 243 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
++ G L Q + L + A S L +
Sbjct: 738 IASNGGGKQALETVQRLLPVLCQAHGLTPA------QVVAIASNIGGKQALETVQRLLP- 790
Query: 303 HLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPL-GQVT 361
++ Q + + A S A ++ L + +++ + +
Sbjct: 791 -----VLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIG 845
Query: 362 AQMNVTDLRKALGMSTND--LSPDSLQLINSYANANQ 396
+ + +++ L + D L+PD + I S Q
Sbjct: 846 GKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQ 882
Score = 52.0 bits (124), Expect = 4e-07
Identities = 32/268 (11%), Positives = 67/268 (25%), Gaps = 41/268 (15%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ L Q+ + Q L + + + + G + + +
Sbjct: 704 IASNNGGKQALETVQRLLPVLCQAHGLTPD------QVVAIASNGGGKQALETVQRLLPV 757
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQ--QDPGEYPEEVKVCL---- 176
+ ++ + A+ + A + QD G +V
Sbjct: 758 LCQAHGLTPA------QVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIG 811
Query: 177 -QEAIKYYEQNLA-LMKEINDTAAQGRACGNLGNTYYLLGNFKQAI-------------- 220
++A++ ++ L L + T Q A + L ++ +
Sbjct: 812 GKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQV 871
Query: 221 --YYHQERLKIAREFGDKAAE-----RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL 273
K A E + + + G QA + VL QD
Sbjct: 872 VAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGKQALETVQRLLPVLCQDH 931
Query: 274 GDRAVEAQACYSLGNTYTLLRDYPTAID 301
G + A S L +
Sbjct: 932 GLTPDQVVAIASNSGGKQALETVQRLLP 959
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 72.4 bits (179), Expect = 1e-15
Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 40/153 (26%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ LGNAY+ GDY +A++Y+++ L L N A++ NLGN G YDEA+
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEY 65
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
++ LE+ + +E A YNLGN Y+ +G EAI+Y
Sbjct: 66 YQKALEL----DPNNAE--AWYNLGNAYYKQGD--------------------YDEAIEY 99
Query: 183 YEQNLALMKEIN-DTAAQGRACGNLGNTYYLLG 214
Y++ AL E++ + A A NLGN G
Sbjct: 100 YQK--AL--ELDPNNAE---AKQNLGNAKQKQG 125
Score = 71.3 bits (176), Expect = 4e-15
Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 40/151 (26%)
Query: 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQD 164
NLGN G YDEA+ ++ LE+ + +E A YNLGN Y+ +G
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALEL----DPNNAE--AWYNLGNAYYKQGD--------- 58
Query: 165 PGEYPEEVKVCLQEAIKYYEQNLALMKEIN-DTAAQGRACGNLGNTYYLLGNFKQAIYYH 223
EAI+YY++ AL E++ + A A NLGN YY G++ +AI Y+
Sbjct: 59 -----------YDEAIEYYQK--AL--ELDPNNAE---AWYNLGNAYYKQGDYDEAIEYY 100
Query: 224 QERLKIAREFGDKAAERRANSNLGNSHIFLG 254
Q+ L++ + A NLGN+ G
Sbjct: 101 QKALELDPNNAE------AKQNLGNAKQKQG 125
Score = 62.8 bits (154), Expect = 3e-12
Identities = 49/149 (32%), Positives = 73/149 (48%), Gaps = 38/149 (25%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
A YNLGN Y+ +G EAI+YY++ AL E++ A+
Sbjct: 11 AWYNLGNAYYKQGD--------------------YDEAIEYYQK--AL--ELDPNNAE-- 44
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A NLGN YY G++ +AI Y+Q+ L++ AE A NLGN++ G+Y A E
Sbjct: 45 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AE--AWYNLGNAYYKQGDYDEAIE 98
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTY 290
+Y++ L L + A+A +LGN
Sbjct: 99 YYQKALELDPNN------AEAKQNLGNAK 121
Score = 40.5 bits (96), Expect = 2e-04
Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 12/108 (11%)
Query: 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 301
A NLGN++ G+Y A E+Y++ L L + A+A Y+LGN Y DY AI+
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIE 64
Query: 302 YHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
Y+ + L + + A ++LGNA+ +G++++A+ + K LE+
Sbjct: 65 YYQKALELDPNNAE------AWYNLGNAYYKQGDYDEAIEYYQKALEL 106
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 74.0 bits (181), Expect = 1e-14
Identities = 20/198 (10%), Positives = 52/198 (26%), Gaps = 22/198 (11%)
Query: 53 TDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKV 112
+ + + DY+ + K+ L D + N
Sbjct: 108 HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE 167
Query: 113 MGKYDEAMVCCKRHLEISRQLN-DKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEE 171
G + + ++ L+ L+ ++ + + YN + +
Sbjct: 168 NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR---------------- 211
Query: 172 VKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQER-LKIA 230
+E++ + + + IN A G+ G L + I ++
Sbjct: 212 ----YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267
Query: 231 REFGDKAAERRANSNLGN 248
A + + +
Sbjct: 268 DILEMHAYKEALVNKISR 285
Score = 69.4 bits (169), Expect = 4e-13
Identities = 27/219 (12%), Positives = 63/219 (28%), Gaps = 22/219 (10%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ Y++ +L + + + + Y+ ++
Sbjct: 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILE 137
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
K+ L D + N+Y G L++ I
Sbjct: 138 LKKLLNQQLTGIDVYQNLYIENAIANIYAENGY--------------------LKKGIDL 177
Query: 183 YEQNLALMKEINDTAA-QGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERR 241
+EQ L ++ ++D + N YL +++++Y + ++I+ A +
Sbjct: 178 FEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237
Query: 242 ANSNLGNSHIFLGEYQ-AASEHYKRTLVLAQDLGDRAVE 279
G L + + YK+ L A +
Sbjct: 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYK 276
Score = 67.5 bits (164), Expect = 2e-12
Identities = 26/225 (11%), Positives = 56/225 (24%), Gaps = 21/225 (9%)
Query: 92 NMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYH 151
+ + K + L +Y E L+ + + Y +
Sbjct: 67 LIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL 126
Query: 152 AKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYY 211
K + I ++ L D + N Y
Sbjct: 127 KKVD--------------------YEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA 166
Query: 212 LLGNFKQAIYYHQERLKIAREFGDKAAER-RANSNLGNSHIFLGEYQAASEHYKRTLVLA 270
G K+ I ++ LK D + N + Y+ + + + ++
Sbjct: 167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226
Query: 271 QDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD 315
+ A+ Q Y G L I+ + +++
Sbjct: 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271
Score = 49.4 bits (117), Expect = 1e-06
Identities = 8/103 (7%), Positives = 30/103 (29%), Gaps = 1/103 (0%)
Query: 53 TDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKV 112
D+ + A + Y++++ + + ++ + + G L+
Sbjct: 189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK 248
Query: 113 MGKYDEAMVCC-KRHLEISRQLNDKLSEGRALYNLGNVYHAKG 154
+ + + K+ L + + + + H
Sbjct: 249 LEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKISRLEHHHH 291
Score = 45.9 bits (108), Expect = 2e-05
Identities = 21/155 (13%), Positives = 46/155 (29%), Gaps = 1/155 (0%)
Query: 203 CGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEH 262
+ +K+ LK + + + + +Y+
Sbjct: 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILE 137
Query: 263 YKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM-DRVGEGR 321
K+ L D ++ N Y ID + L + L + + +
Sbjct: 138 LKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK 197
Query: 322 ACWSLGNAHAARGNHEKALYFATKHLEISKQLGDP 356
++ A +E++LY K +EIS ++
Sbjct: 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 73.7 bits (180), Expect = 9e-14
Identities = 43/234 (18%), Positives = 83/234 (35%), Gaps = 44/234 (18%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ L N G+ ++A++ +++ L + A + NL + L+ GK EA++
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQGKLQEALMH 65
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
K + IS A N+GN +Q A++
Sbjct: 66 YKEAIRISPTF------ADAYSNMGNTLKEMQD--------------------VQGALQC 99
Query: 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRA 242
Y + + + A A NL + + GN +AI ++ LK+ +F D A
Sbjct: 100 YTRAIQI------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD------A 147
Query: 243 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY 296
NL + + ++ E K+ + + D ++ Y L +
Sbjct: 148 YCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGF 201
Score = 72.2 bits (176), Expect = 3e-13
Identities = 40/208 (19%), Positives = 76/208 (36%), Gaps = 44/208 (21%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
+L NL N+ +G ++EA++ Y + L + E
Sbjct: 11 SLNNLANIKREQGN--------------------IEEAVRLYRKALEVFPE------FAA 44
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A NL + G ++A+ +++E ++I+ F D A SN+GN+ + + Q A +
Sbjct: 45 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD------AYSNMGNTLKEMQDVQGALQ 98
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321
Y R + + A A +L + + + P AI + L + D
Sbjct: 99 CYTRAIQINPAF------ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD------ 146
Query: 322 ACWSLGNAHAARGNHEKALYFATKHLEI 349
A +L + + K + I
Sbjct: 147 AYCNLAHCLQIVCDWTDYDERMKKLVSI 174
Score = 67.1 bits (163), Expect = 9e-12
Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 18/158 (11%)
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
+ NL N GN ++A+ +++ L++ EF A+SNL + G+ Q A
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA------AHSNLASVLQQQGKLQEALM 64
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321
HYK + ++ A A ++GNT ++D A+ + R + I D
Sbjct: 65 HYKEAIRISPTF------ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD------ 112
Query: 322 ACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQ 359
A +L + H GN +A+ L++ D
Sbjct: 113 AHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCN 150
Score = 54.0 bits (129), Expect = 1e-07
Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 16/124 (12%)
Query: 32 LCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLAR 91
L + G + + ++ AI+ + YS +GN + D Q A+Q + + + +
Sbjct: 53 LQQQGKLQEALMHYKEAIRISPTF----ADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108
Query: 92 NMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYH 151
A + NL + K G EA+ + L++ D A NL +
Sbjct: 109 AF------ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD------AYCNLAHCLQ 156
Query: 152 AKGK 155
Sbjct: 157 IVCD 160
Score = 30.9 bits (69), Expect = 1.3
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKA 339
A + +L N + A+ + + L + + A +L + +G ++A
Sbjct: 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA------AHSNLASVLQQQGKLQEA 62
Query: 340 L 340
L
Sbjct: 63 L 63
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 65.1 bits (159), Expect = 4e-12
Identities = 22/188 (11%), Positives = 47/188 (25%), Gaps = 45/188 (23%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
G D++ A+ ++ N+G ++ EA
Sbjct: 9 LWNEGVLAADKKDWKGALDAFSAVQDP---------HSRICFNIGCMYTILKNMTEAEKA 59
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
R + + L+ A + G +Y+ K AIK
Sbjct: 60 FTRSINR----DKHLAV--AYFQRGMLYYQTEK--------------------YDLAIKD 93
Query: 183 YEQNLALMKEINDTAAQGRACG----------NLGNTYYLLGNFKQAIYYHQERLKIARE 232
++ L ++ + N+ Y +K+A + E
Sbjct: 94 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153
Query: 233 FGDKAAER 240
++
Sbjct: 154 PRHSKIDK 161
Score = 63.6 bits (155), Expect = 1e-11
Identities = 36/200 (18%), Positives = 58/200 (29%), Gaps = 53/200 (26%)
Query: 97 LGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKA 156
L EA S N G + A L+ + D S +N+G +Y
Sbjct: 3 LVEAISLWNEGVLAADKKDWKGA-------LDAFSAVQDPHSR--ICFNIGCMYTILKN- 52
Query: 157 IGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNF 216
+ EA K + + ++ + A A G YY +
Sbjct: 53 -------------------MTEAEKAFTR--SI--NRDKHLAV--AYFQRGMLYYQTEKY 87
Query: 217 KQAIYYHQERLKIAR------------EFGDKAAERRANSNLGNSHIFLGEYQAASEHYK 264
AI +E L R +F A E N+ + E++ A E
Sbjct: 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE--VLYNIAFMYAKKEEWKKAEEQLA 145
Query: 265 RTLVL----AQDLGDRAVEA 280
+ D+A+E
Sbjct: 146 LATSMKSEPRHSKIDKAMEC 165
Score = 59.3 bits (144), Expect = 3e-10
Identities = 24/171 (14%), Positives = 49/171 (28%), Gaps = 45/171 (26%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
+L+N G + K + A+ + + D + R
Sbjct: 8 SLWNEGVLAADKKD--------------------WKGALDAFSA-------VQDPHS--R 38
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
C N+G Y +L N +A + + A G + +Y A +
Sbjct: 39 ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV------AYFQRGMLYYQTEKYDLAIK 92
Query: 262 HYKRTLVLAQD----------LGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
K L+ + L + + Y++ Y ++ A +
Sbjct: 93 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQ 143
Score = 59.0 bits (143), Expect = 4e-10
Identities = 28/158 (17%), Positives = 52/158 (32%), Gaps = 20/158 (12%)
Query: 45 FQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104
++ A+ A + S I +G Y L + +A + + + +++ A +
Sbjct: 22 WKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL------AVAYF 75
Query: 105 NLGNTLKVMGKYDEAMVCCKRHLEI----------SRQLNDKLSEGRALYNLGNVYHAKG 154
G KYD A+ K L L KL LYN+ +Y K
Sbjct: 76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE 135
Query: 155 ---KAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189
KA ++ E + +A++ +
Sbjct: 136 EWKKAEEQL-ALATSMKSEPRHSKIDKAMECVWKQKLY 172
Score = 54.0 bits (130), Expect = 2e-08
Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 29/148 (19%)
Query: 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAER--RANSNLGNSHIFLGEYQAASEH 262
N G ++K A+ F + R N+G + L A +
Sbjct: 11 NEGVLAADKKDWKGAL----------DAF-SAVQDPHSRICFNIGCMYTILKNMTEAEKA 59
Query: 263 YKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI-DYH--LRHL----IIAQQLMD 315
+ R++ + L A A + G Y Y AI D L L +I +++
Sbjct: 60 FTRSINRDKHL------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILG 113
Query: 316 RVGEGRAC---WSLGNAHAARGNHEKAL 340
+ AC +++ +A + +KA
Sbjct: 114 LQFKLFACEVLYNIAFMYAKKEEWKKAE 141
Score = 30.1 bits (68), Expect = 1.4
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 9/71 (12%)
Query: 279 EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEK 338
EA + ++ G +D+ A+D + R C+++G + N +
Sbjct: 5 EAISLWNEGVLAADKKDWKGALDAFSA--VQDP-------HSRICFNIGCMYTILKNMTE 55
Query: 339 ALYFATKHLEI 349
A T+ +
Sbjct: 56 AEKAFTRSINR 66
Score = 28.1 bits (63), Expect = 6.4
Identities = 4/39 (10%), Positives = 10/39 (25%)
Query: 44 FFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQY 82
G + + Y +++KA +
Sbjct: 105 QLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQ 143
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.2 bits (166), Expect = 5e-12
Identities = 83/497 (16%), Positives = 132/497 (26%), Gaps = 197/497 (39%)
Query: 159 KVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQ--GRACGNLGNTYYLLGNF 216
V G++ + L + +E +I+ AA+ L T L+ N
Sbjct: 71 LVEPSKVGQFDQ----VLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN- 125
Query: 217 KQAIYYHQERLKIAREFGDKAAERRANSNL------GNSHIFL---GEYQAASEHYKRTL 267
Y AR + ++++NS L GN+ + G Q ++ Y L
Sbjct: 126 ----YIT------ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG--QGNTDDYFEEL 173
Query: 268 VLAQDLGDRAVEAQACYSLGNTY-TLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSL 326
+DL Y TY L+ D L L
Sbjct: 174 ---RDL----------Y---QTYHVLVGDLIKFSAETLSEL------------------- 198
Query: 327 GNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLSPDSLQ 386
R + F T+ L I + L +P + + L P S
Sbjct: 199 -----IRTTLDAEKVF-TQGLNILEWLENP----SNTPDKDYLLSI---------PISCP 239
Query: 387 LINSYANANQPSPGVRRYNRVRRSSMEQLDLIKLTPEN-KGKQSGSSNSSE-------LS 438
LI A+ Y + TP + G++ S+ ++
Sbjct: 240 LIGVIQLAH--------YVVTAKLL-------GFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 439 KCDEEESFFELLS-----------RFQSERMDDQRCSLSARQSENKENLQRITNTKKSQP 487
+ D ESFF + R SL +
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAY---PNTSLPPSI---------------LED 326
Query: 488 SAPRATTIPAHTPGDDDLLDM--IVGLQS----KRMDEQRAALP-----HLA---DRENA 533
S +P +P M I L +++ + LP ++ +N
Sbjct: 327 SLENNEGVP--SP-------MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377
Query: 534 I----PDDGFLDMLIRCQGARLEDQRSHLPQEGSTVPDEDFFSLITRLQSGRMEDQRA-- 587
+ P L L R S L Q S +P FS +R
Sbjct: 378 VVSGPPQS--LYGL--NLTLRKAKAPSGLDQ--SRIP----FS------------ERKLK 415
Query: 588 --------TVPSVYFHS 596
P FHS
Sbjct: 416 FSNRFLPVASP---FHS 429
Score = 63.1 bits (153), Expect = 2e-10
Identities = 107/613 (17%), Positives = 173/613 (28%), Gaps = 202/613 (32%)
Query: 45 FQAAIQAGTDDLRTLSAIYSQLGNAYFYLG------DYQKAMQY---------------- 82
F + T+ + +LG + K Q+
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL 96
Query: 83 HKQDL-TLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQ--LNDKLSE 139
D+ LA + ++ L T +++ Y A + KR + L + E
Sbjct: 97 EGNDIHALAAKLL-----QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 140 GRA-LYNLGNVYHAKGKAI-GKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTA 197
G A L AI G GQ + +Y EE L++ + Y L+ ++ +
Sbjct: 152 GNAQLV-----------AIFG--GQGNTDDYFEE----LRDLYQTYH---VLVGDLIKFS 191
Query: 198 AQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHI---FLG 254
A+ L L+ A + L I E+ + + L + I +G
Sbjct: 192 AE-----TLSE---LIRTTLDAEKVFTQGLNI-LEWLENPSNTPDKDYLLSIPISCPLIG 242
Query: 255 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM 314
Q A HY T LG T LR Y H + L+ A
Sbjct: 243 VIQLA--HYVVT----------------AKLLGFTPGELRSYLKGATGHSQGLVTAV--- 281
Query: 315 DRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALG 374
A A + E K + + +G +R
Sbjct: 282 --------------AIAETDSWESFFVSVRKAITVLFFIG--------------VRCYEA 313
Query: 375 MSTNDLSPDSLQLINSYANAN-QPSP--GVRRYNRVRRSSMEQL-DLIKLT----PENK- 425
L P L+ +S N PSP + + EQ+ D + T P K
Sbjct: 314 YPNTSLPPSILE--DSLENNEGVPSPMLSISNLTQ------EQVQDYVNKTNSHLPAGKQ 365
Query: 426 -------GKQ----SGSSNSSELSKCDEEESFFELLSRFQSERMDDQ-RCSLSARQSENK 473
G + SG S L L + ++ DQ R S R
Sbjct: 366 VEISLVNGAKNLVVSGPPQS--L------YGLNLTLRKAKAPSGLDQSRIPFSER----- 412
Query: 474 ENLQRITNTKKSQPSA---PRATTIPAHTP--------GDDDLLDMIVGLQSKRMDEQRA 522
K + S P P H+ + DL+ V +K +
Sbjct: 413 ----------KLKFSNRFLP--VASPFHSHLLVPASDLINKDLVKNNVSFNAKDI----- 455
Query: 523 ALP--HLAD----RENAIPDDGFL-DMLIRCQ---GARLEDQRSHL----PQEGSTVPDE 568
+P D R + + D +IR + + +H+ P S +
Sbjct: 456 QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLG-- 513
Query: 569 DFFSLITRLQSGR 581
L R + G
Sbjct: 514 ---VLTHRNKDGT 523
Score = 37.7 bits (87), Expect = 0.012
Identities = 39/247 (15%), Positives = 65/247 (26%), Gaps = 97/247 (39%)
Query: 413 EQL--DLIKLTPENKGKQSGSSNSSELSKCDEEESFFELLSRFQ---SERMDDQRC---- 463
QL K+ PE + + DE + EL+ +F S ++ +
Sbjct: 31 SQLQEQFNKILPEP---------TEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD 81
Query: 464 ---------------------SLSAR-QSENKENLQRITNTKKSQPSAPRATTIPAHTPG 501
+L+A+ EN L + K+ +A P
Sbjct: 82 QVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 502 DDDLLD----------MIVGLQ---SKRMDEQRAALPHLADRENAIPDDGFLDMLIRCQG 548
+ L I G Q +E L L + + D LI+
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEE----LRDLYQTYHVLVGD-----LIKFSA 192
Query: 549 ARLE-------DQRSHLPQ---------EGSTVPDEDFFSLITRLQSGRMEDQRATVPSV 592
L D Q S PD+D+ ++P +
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL---------------LSIP-I 236
Query: 593 YFHSFPI 599
S P+
Sbjct: 237 ---SCPL 240
Score = 37.0 bits (85), Expect = 0.021
Identities = 61/322 (18%), Positives = 100/322 (31%), Gaps = 119/322 (36%)
Query: 113 MGK--YDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGE--- 167
MG Y + + ++ + + RA + + Y G +I + +P
Sbjct: 1631 MGMDLYKTS--------KAAQDVWN-----RADNHFKDTY---GFSILDIVINNPVNLTI 1674
Query: 168 -------------YPEEVKVCLQEAIKYYEQNLALMKEINDTAA----QGRACGNLGNTY 210
Y + + + + + KEIN+ + + G L T
Sbjct: 1675 HFGGEKGKRIRENYS---AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK-GLLSATQ 1730
Query: 211 YLLGNFKQ--------AIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEH 262
F Q A + E LK + A A G+S LGEY A
Sbjct: 1731 -----FTQPALTLMEKAAF---EDLK--SKGLIPADATFA----GHS---LGEYAA---- 1769
Query: 263 YKRTLVLAQDLGDRAVEAQA-CYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321
LA + A S+ + ++ R + + Q + R GR
Sbjct: 1770 ------LA---------SLADVMSIESLVEVV---------FYRGMTM-QVAVPRDELGR 1804
Query: 322 ACWSL----GNAHAARGNHEKALYFATKHLEISKQLGDPL--------GQ--VTAQMNVT 367
+ + + AA + E Y + K+ G + Q V A
Sbjct: 1805 SNYGMIAINPGRVAASFSQEALQYVVE---RVGKRTGWLVEIVNYNVENQQYVAAG---- 1857
Query: 368 DLRKALGMSTNDLSPDSLQLIN 389
DLR AL TN L+ LQ I+
Sbjct: 1858 DLR-ALDTVTNVLNFIKLQKID 1878
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 60.2 bits (147), Expect = 2e-11
Identities = 11/125 (8%), Positives = 33/125 (26%), Gaps = 30/125 (24%)
Query: 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQD 164
G G Y E++ ++ +++ + + S+ G + +
Sbjct: 11 LEGVLQYDAGNYTESIDLFEKAIQL----DPEESK--YWLMKGKALYNLER--------- 55
Query: 165 PGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQ 224
+EA+ Y + + + + + + +
Sbjct: 56 -----------YEEAVDCYNY--VI--NVIEDEYNKDVWAAKADALRYIEGKEVEAEIAE 100
Query: 225 ERLKI 229
R K+
Sbjct: 101 ARAKL 105
Score = 60.2 bits (147), Expect = 2e-11
Identities = 15/128 (11%), Positives = 36/128 (28%), Gaps = 30/128 (23%)
Query: 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121
Y G + G+Y +++ ++ + L E+K G L + +Y+EA+
Sbjct: 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE------ESKYWLMKGKALYNLERYEEAVD 61
Query: 122 CCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181
C + + ++ + + + +
Sbjct: 62 CYNYVINV--IEDEYNKD--VWAAKADALRYIEG--------------------KEVEAE 97
Query: 182 YYEQNLAL 189
E L
Sbjct: 98 IAEARAKL 105
Score = 35.1 bits (82), Expect = 0.013
Identities = 13/105 (12%), Positives = 31/105 (29%), Gaps = 10/105 (9%)
Query: 245 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 304
G G Y + + +++ + L + E++ G L Y A+D +
Sbjct: 11 LEGVLQYDAGNYTESIDLFEKAIQLDPE------ESKYWLMKGKALYNLERYEEAVDCYN 64
Query: 305 RHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
+++ + +A E A ++
Sbjct: 65 Y----VINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 63.3 bits (154), Expect = 1e-10
Identities = 29/213 (13%), Positives = 54/213 (25%), Gaps = 45/213 (21%)
Query: 74 GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL 133
D + + + + + + L + MG + +R L +
Sbjct: 3 ADGPRELLQLRAAVRHRPQ------DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH 56
Query: 134 NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI 193
A+ LG V + + EA +Q
Sbjct: 57 ------PEAVARLGRVRWTQQR--------------------HAEAAVLLQQASDA---- 86
Query: 194 NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL 253
LG+ G + A + ++ E + L N L
Sbjct: 87 --APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE------PYITAQLLNWRRRL 138
Query: 254 GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 286
+++A + + A G AVE A S
Sbjct: 139 CDWRALDVLSAQ-VRAAVAQGVGAVEPFAFLSE 170
Score = 63.3 bits (154), Expect = 1e-10
Identities = 25/198 (12%), Positives = 54/198 (27%), Gaps = 42/198 (21%)
Query: 35 AGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNME 94
D + +AA++ D + L +A +GD ++ L L
Sbjct: 2 TADGPRELLQLRAAVRHRPQDF----VAWLMLADAELGMGDTTAGEMAVQRGLALHPGH- 56
Query: 95 DKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKG 154
++ LG ++ EA V ++ + + + LG+ G
Sbjct: 57 -----PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH------PGIALWLGHALEDAG 105
Query: 155 KAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLG 214
+ + A Y + L+ E + L N L
Sbjct: 106 Q--------------------AEAAAAAYTRAHQLLPE------EPYITAQLLNWRRRLC 139
Query: 215 NFKQAIYYHQERLKIARE 232
+++ + +
Sbjct: 140 DWRALDVLSAQVRAAVAQ 157
Score = 49.5 bits (118), Expect = 3e-06
Identities = 20/148 (13%), Positives = 44/148 (29%), Gaps = 18/148 (12%)
Query: 212 LLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ 271
+ + + + + ++ + A L ++ + +G+ A +R L L
Sbjct: 1 MTADGPRELLQLRAAVRHRPQDFV------AWLMLADAELGMGDTTAGEMAVQRGLALHP 54
Query: 272 DLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHA 331
+A LG + + A + A + LG+A
Sbjct: 55 GH------PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH------PGIALWLGHALE 102
Query: 332 ARGNHEKALYFATKHLEISKQLGDPLGQ 359
G E A T+ ++ + Q
Sbjct: 103 DAGQAEAAAAAYTRAHQLLPEEPYITAQ 130
Score = 36.7 bits (85), Expect = 0.019
Identities = 15/101 (14%), Positives = 25/101 (24%), Gaps = 10/101 (9%)
Query: 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHK 84
+A G Q A A + I LG+A G + A +
Sbjct: 60 VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPG----IALWLGHALEDAGQAEAAAAAYT 115
Query: 85 QDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKR 125
+ L L N + + + V +
Sbjct: 116 RAHQLLPEEPYIT------AQLLNWRRRLCDWRALDVLSAQ 150
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 57.0 bits (139), Expect = 1e-10
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 12/92 (13%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ LGNAY+ GDY +A++Y+++ L L A++ NLGN G YDEA+
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKG 154
++ LE+ + +E A NLGN +G
Sbjct: 66 YQKALEL----DPNNAE--AKQNLGNAKQKQG 91
Score = 48.2 bits (116), Expect = 2e-07
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 34/114 (29%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIN-DTAAQG 200
A YNLGN Y+ +G EAI+YY++ AL E++ + A
Sbjct: 11 AWYNLGNAYYKQGD--------------------YDEAIEYYQK--AL--ELDPNNAE-- 44
Query: 201 RACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG 254
A NLGN YY G++ +AI Y+Q+ L++ + A NLGN+ G
Sbjct: 45 -AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE------AKQNLGNAKQKQG 91
Score = 48.2 bits (116), Expect = 2e-07
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 12/89 (13%)
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A NLGN YY G++ +AI Y+Q+ L++ + A NLGN++ G+Y A E
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE------AWYNLGNAYYKQGDYDEAIE 64
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTY 290
+Y++ L L + A+A +LGN
Sbjct: 65 YYQKALELDPNN------AEAKQNLGNAK 87
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 56.7 bits (137), Expect = 4e-10
Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 26/132 (19%)
Query: 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD 235
+A+ YYE+ +A + D A LG+T+ LG +++A +K
Sbjct: 6 EAQAVPYYEKAIASGLQGKDLA---ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 236 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD 295
LG Y+ E + + D ++
Sbjct: 63 ------LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET-----------------IQS 99
Query: 296 YPTAIDYHLRHL 307
Y AI ++ L
Sbjct: 100 YKQAILFYADKL 111
Score = 54.7 bits (132), Expect = 2e-09
Identities = 19/118 (16%), Positives = 43/118 (36%), Gaps = 12/118 (10%)
Query: 73 LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQ 132
LG +A+ Y+++ + +D A+ LG+T + +G+Y +A ++
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDL---AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN 59
Query: 133 LNDKLSEGRALYNLGNVYHAKG---KAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNL 187
V + G + + + + +E ++AI +Y L
Sbjct: 60 HQA------LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADKL 111
Score = 54.3 bits (131), Expect = 2e-09
Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 7/108 (6%)
Query: 36 GDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMED 95
G V +++ AI +G Y LG+ + LG+Y+KA + N
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAEC-YLGLGSTFRTLGEYRKAEAVLANGVKQFPN--- 59
Query: 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRAL 143
L +G+Y++ + + + + S +A+
Sbjct: 60 ---HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI 104
Score = 52.4 bits (126), Expect = 1e-08
Identities = 17/156 (10%), Positives = 37/156 (23%), Gaps = 46/156 (29%)
Query: 112 VMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEE 171
V+G +A+ ++ + Q D LG+ + G+
Sbjct: 2 VLGLEAQAVPYYEKAIASGLQGKDLA---ECYLGLGSTFRTLGE---------------- 42
Query: 172 VKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAR 231
++A + Y LG ++Q + + +
Sbjct: 43 ----YRKAEAVLANGVKQFPNHQA------LRVFYAMVLYNLGRYEQGVELLLKIIAETS 92
Query: 232 EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTL 267
+ + Y+ A Y L
Sbjct: 93 D-----------------DETIQSYKQAILFYADKL 111
Score = 43.6 bits (103), Expect = 1e-05
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 4/100 (4%)
Query: 253 LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312
LG A +Y++ + D A+ LG+T+ L +Y A +
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDL---AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN 59
Query: 313 LMD-RVGEGRACWSLGNAHAARGNHEKALYFATKHLEISK 351
RV ++LG K + + I
Sbjct: 60 HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99
Score = 27.4 bits (61), Expect = 5.4
Identities = 10/83 (12%), Positives = 21/83 (25%), Gaps = 27/83 (32%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGD------------- 75
G G+ R A ++ + A+ + LG
Sbjct: 34 GSTFRTLGEYRKAEAVLANGVKQFPNH----QALRVFYAMVLYNLGRYEQGVELLLKIIA 89
Query: 76 ----------YQKAMQYHKQDLT 88
Y++A+ ++ L
Sbjct: 90 ETSDDETIQSYKQAILFYADKLD 112
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 56.5 bits (137), Expect = 5e-10
Identities = 21/142 (14%), Positives = 50/142 (35%), Gaps = 28/142 (19%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
LGNA + D++KA ++ + + L + N K+ E +
Sbjct: 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS------NITFYNNKAAVYFEEKKFAECVQF 64
Query: 123 CKRHLEISRQ-LNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181
C++ +E+ R+ D +A+ GN + + L A++
Sbjct: 65 CEKAVEVGRETRADYKLIAKAMSRAGNAFQKQND--------------------LSLAVQ 104
Query: 182 YYEQNLALMKEINDTAAQGRAC 203
++ ++L+ + + +
Sbjct: 105 WFHRSLSE-FRDPELVKKVKEL 125
Score = 55.0 bits (133), Expect = 2e-09
Identities = 21/132 (15%), Positives = 49/132 (37%), Gaps = 27/132 (20%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
A +LGN + + ++A +Y++ A+ E++ +
Sbjct: 10 AEKDLGNAAYKQKD--------------------FEKAHVHYDK--AI--ELDPSNIT-- 43
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAER-RANSNLGNSHIFLGEYQAAS 260
N Y+ F + + + ++ +++ RE +A S GN+ + A
Sbjct: 44 FYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAV 103
Query: 261 EHYKRTLVLAQD 272
+ + R+L +D
Sbjct: 104 QWFHRSLSEFRD 115
Score = 50.7 bits (122), Expect = 6e-08
Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 7/115 (6%)
Query: 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDL 87
G K D + AI+ + Y+ YF + + +Q+ ++ +
Sbjct: 14 LGNAAYKQKDFEKAHVHYDKAIELDPSN----ITFYNNKAAVYFEEKKFAECVQFCEKAV 69
Query: 88 TLARNM-EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR--QLNDKLSE 139
+ R D AK+ GN + A+ R L R +L K+ E
Sbjct: 70 EVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVKE 124
Score = 46.9 bits (112), Expect = 1e-06
Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 205 NLGNTYYLLGNFKQAI-YYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHY 263
+LGN Y +F++A +Y + A E +N + ++ +
Sbjct: 13 DLGNAAYKQKDFEKAHVHYDK-----AIELDPSNIT--FYNNKAAVYFEEKKFAECVQFC 65
Query: 264 KRTLVLAQD-LGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
++ + + ++ D + A+A GN + D A+ +
Sbjct: 66 EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQW 105
Score = 46.5 bits (111), Expect = 2e-06
Identities = 21/128 (16%), Positives = 41/128 (32%), Gaps = 27/128 (21%)
Query: 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQD 164
+LGN +++A V + +E L+ N VY + K
Sbjct: 13 DLGNAAYKQKDFEKAHVHYDKAIE----LDPSNIT--FYNNKAAVYFEEKK--------- 57
Query: 165 PGEYPEEVKVCLQEAIKYYEQNLALMKEIN-DTAAQGRACGNLGNTYYLLGNFKQAIYYH 223
E +++ E+ + + +E D +A GN + + A+ +
Sbjct: 58 -----------FAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWF 106
Query: 224 QERLKIAR 231
L R
Sbjct: 107 HRSLSEFR 114
Score = 36.1 bits (84), Expect = 0.006
Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 7/106 (6%)
Query: 245 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 304
+LGN+ +++ A HY + + L + Y + + + +
Sbjct: 13 DLGNAAYKQKDFEKAHVHYDKAIELDPS------NITFYNNKAAVYFEEKKFAECVQFCE 66
Query: 305 RHLIIA-QQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
+ + + + D +A GNA + + A+ + + L
Sbjct: 67 KAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112
Score = 35.7 bits (83), Expect = 0.009
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 32 LCKAGDCRAGVAFFQAAIQAGTDDLRTLSAI---YSQLGNAYFYLGDYQKAMQYHKQDLT 88
+ V F + A++ G + I S+ GNA+ D A+Q+ + L+
Sbjct: 52 YFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111
Query: 89 LARNME--DKLGEAK 101
R+ E K+ E +
Sbjct: 112 EFRDPELVKKVKELE 126
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 53.8 bits (130), Expect = 5e-09
Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 28/142 (19%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+LGN + D+ A++++ + L N G Y++
Sbjct: 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDYNKCREL 60
Query: 123 CKRHLEISRQ-LNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181
C++ +E+ R+ D +A +GN Y + K ++AI
Sbjct: 61 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEK--------------------YKDAIH 100
Query: 182 YYEQNLALMKEINDTAAQGRAC 203
+Y ++LA + D + +
Sbjct: 101 FYNKSLAEHRT-PDVLKKCQQA 121
Score = 49.6 bits (119), Expect = 2e-07
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 5/105 (4%)
Query: 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDL 87
G K D + + A + + + YF GDY K + ++ +
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCRELCEKAI 65
Query: 88 TLAR-NMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131
+ R N ED AK+ +GN+ KY +A+ + L R
Sbjct: 66 EVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
Score = 49.6 bits (119), Expect = 2e-07
Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 27/132 (20%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
LGN + K A+K+Y++ A E++ T
Sbjct: 6 KEKELGNDAYKKKD--------------------FDTALKHYDK--AK--ELDPTNMT-- 39
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAER-RANSNLGNSHIFLGEYQAAS 260
N Y+ G++ + ++ +++ RE + + +A + +GNS+ +Y+ A
Sbjct: 40 YITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAI 99
Query: 261 EHYKRTLVLAQD 272
Y ++L +
Sbjct: 100 HFYNKSLAEHRT 111
Score = 38.8 bits (91), Expect = 9e-04
Identities = 29/142 (20%), Positives = 54/142 (38%), Gaps = 25/142 (17%)
Query: 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQD 164
LGN +D A+ + E L+ + N VY KG
Sbjct: 9 ELGNDAYKKKDFDTALKHYDKAKE----LDPTNMT--YITNQAAVYFEKGD--------- 53
Query: 165 PGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQ 224
Y + ++C ++AI+ +N ++I +A +GN+Y+ +K AI+++
Sbjct: 54 ---YNKCRELC-EKAIEVGRENREDYRQI------AKAYARIGNSYFKEEKYKDAIHFYN 103
Query: 225 ERLKIAREFGDKAAERRANSNL 246
+ L R ++A L
Sbjct: 104 KSLAEHRTPDVLKKCQQAEKIL 125
Score = 37.7 bits (88), Expect = 0.002
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 34 KAGDCRAGVAFFQAAIQAG---TDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLA 90
+ GD + AI+ G +D R ++ Y+++GN+YF Y+ A+ ++ + L
Sbjct: 50 EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109
Query: 91 RN--MEDKLGEAK 101
R + K +A+
Sbjct: 110 RTPDVLKKCQQAE 122
Score = 33.0 bits (76), Expect = 0.090
Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 13/109 (11%)
Query: 245 NLGNSHIFLGEYQAASEHYKRTLVLAQD----LGDRAVEAQACYSLGNTYTLLRDYPTAI 300
LGN ++ A +HY + L + ++A + G+ AI
Sbjct: 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQA---AVYFEKGDYNKCRELCEKAI 65
Query: 301 DYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
+ + + D +A +GN++ ++ A++F K L
Sbjct: 66 E------VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 53.1 bits (128), Expect = 7e-09
Identities = 27/131 (20%), Positives = 39/131 (29%), Gaps = 16/131 (12%)
Query: 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD 235
+Q + E LA R LG TY F A+ + + L +
Sbjct: 1 MQAITERLEAMLA----QGTDNMLLRF--TLGKTYAEHEQFDAALPHLRAALDFDPTYSV 54
Query: 236 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD 295
A LG + G+ A + ++ L AQ GD Q L L
Sbjct: 55 ------AWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGD----QQVVKELQVFLRRLAR 104
Query: 296 YPTAIDYHLRH 306
+H H
Sbjct: 105 EDALEHHHHHH 115
Score = 47.7 bits (114), Expect = 5e-07
Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 14/115 (12%)
Query: 42 VAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101
+A + GTD+ + LG Y + A+ + + L +
Sbjct: 5 TERLEAMLAQGTDN----MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY------SV 54
Query: 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKA 156
+ LG TL+ G A + L ++ D+ + + L +
Sbjct: 55 AWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQ----QVVKELQVFLRRLARE 105
Score = 46.6 bits (111), Expect = 1e-06
Identities = 21/122 (17%), Positives = 34/122 (27%), Gaps = 30/122 (24%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
+ LG Y + A+ + AL + + T +
Sbjct: 21 LRFTLGKTYAEHEQ--------------------FDAALPHLRA--AL--DFDPTYSV-- 54
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A LG T G+ A + L A+ GD+ + L L A
Sbjct: 55 AWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVK----ELQVFLRRLAREDALEH 110
Query: 262 HY 263
H+
Sbjct: 111 HH 112
Score = 38.5 bits (90), Expect = 0.001
Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 14/110 (12%)
Query: 257 QAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR 316
QA +E + L D ++LG TY + A+ + L
Sbjct: 2 QAITERLEAMLAQGTD------NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSV- 54
Query: 317 VGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNV 366
A LG +G+ A L ++ GD QV ++ V
Sbjct: 55 -----AWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQ--QVVKELQV 97
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat,
cysteine rich protein, loop-helix-TU repeat protein,
hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Length = 273
Score = 55.3 bits (134), Expect = 1e-08
Identities = 56/321 (17%), Positives = 103/321 (32%), Gaps = 102/321 (31%)
Query: 66 LGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGK-----YDEAM 120
LG + D+ +A +Y ++ L E NLG G+ +A
Sbjct: 12 LGAKSYKEKDFTQAKKYFEK---AC-----DLKENSGCFNLGVLYY-QGQGVEKNLKKAA 62
Query: 121 VCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAI 180
+ LN + LGN+Y++ G+ Q+ +A+
Sbjct: 63 ----SFYAKACDLNY----SNGCHLLGNLYYS-----GQGVSQNT-----------NKAL 98
Query: 181 KYYEQNLALMKEINDTAAQG--RACGNLGNTYYL-LG---NFKQAIYYHQERLKIAREFG 234
+YY + C +LG Y+ +FK+A+ Y
Sbjct: 99 QYYSK----------ACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFT---------- 138
Query: 235 DKAAER---RANSNLGNSHIFLGE-----YQAASEHYKRTLVLAQDLGDRAVEAQACYSL 286
KA + + LG+ + G + A Y + A DL D + C++
Sbjct: 139 -KACDLNDGDGCTILGSLY-DAGRGTPKDLKKALASYDK----ACDLKD----SPGCFNA 188
Query: 287 GNTYT----LLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAA-RG---NHEK 338
GN Y +++ A+ + + + G C++LG G N ++
Sbjct: 189 GNMYHHGEGATKNFKEALARYSK---ACEL-----ENGGGCFNLGAMQYNGEGVTRNEKQ 240
Query: 339 ALYFATKHLEISKQLGDPLGQ 359
A+ + +LG
Sbjct: 241 AIEN----FKKGCKLGAKGAC 257
Score = 48.7 bits (117), Expect = 2e-06
Identities = 51/241 (21%), Positives = 79/241 (32%), Gaps = 84/241 (34%)
Query: 141 RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQG 200
+ L LG + + +A KY+E+
Sbjct: 7 KELVGLGAKSYKEKD--------------------FTQAKKYFEK----------ACDLK 36
Query: 201 --RACGNLGNTYYL-LG---NFKQAIYYHQERLKIAREFGDKAAER---RANSNLGNSHI 251
C NLG YY G N K+A ++ KA + LGN +
Sbjct: 37 ENSGCFNLGVLYYQGQGVEKNLKKAASFYA-----------KACDLNYSNGCHLLGNLY- 84
Query: 252 FLGE-----YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYT----LLRDYPTAIDY 302
+ G+ A ++Y + A DL A+ C SLG Y + RD+ A++Y
Sbjct: 85 YSGQGVSQNTNKALQYYSK----ACDLKY----AEGCASLGGIYHDGKVVTRDFKKAVEY 136
Query: 303 HLRHLIIAQQLMDRVGEGRACWSLGNAHA-ARG---NHEKALYFATKHLEISKQLGDPLG 358
+ +G C LG+ + RG + +KAL K + L D G
Sbjct: 137 FTK---ACDL-----NDGDGCTILGSLYDAGRGTPKDLKKALASYDK----ACDLKDSPG 184
Query: 359 Q 359
Sbjct: 185 C 185
Score = 43.0 bits (102), Expect = 1e-04
Identities = 37/180 (20%), Positives = 63/180 (35%), Gaps = 50/180 (27%)
Query: 198 AQG--RACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAER---RANSNLGNSHIF 252
A+ + LG Y +F QA Y + KA + NLG + +
Sbjct: 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFE-----------KACDLKENSGCFNLGVLY-Y 49
Query: 253 LGE-----YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYT----LLRDYPTAIDYH 303
G+ + A+ Y + A DL + C+ LGN Y + ++ A+ Y+
Sbjct: 50 QGQGVEKNLKKAASFYAK----ACDLNY----SNGCHLLGNLYYSGQGVSQNTNKALQYY 101
Query: 304 LRHLIIAQQLMDRVGEGRACWSLGNAHAA-RG---NHEKALYFATKHLEISKQLGDPLGQ 359
+ C SLG + + + +KA+ + TK + L D G
Sbjct: 102 SKA---CDL-----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTK----ACDLNDGDGC 149
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 1e-08
Identities = 60/370 (16%), Positives = 106/370 (28%), Gaps = 109/370 (29%)
Query: 253 LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI--DYHLRHLIIA 310
GE+Q YK L D V+ C + +D P +I + H+I++
Sbjct: 11 TGEHQ---YQYKDIL---SVFEDAFVDNFDCKDV-------QDMPKSILSKEEIDHIIMS 57
Query: 311 QQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQ-LGDPLGQVTAQMNVTDL 369
+ + R W+L +K E+ ++ + + L ++N L
Sbjct: 58 KDAVSGTL--RLFWTL----------------LSKQEEMVQKFVEEVL-----RINYKFL 94
Query: 370 RKALGMSTNDLSPDSLQLI---NSYANANQPSPGVRRYNRVRRSSMEQLD--LIKLTPEN 424
+ S + I + N NQ +YN R +L L++L P
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV---FAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 425 K---------GKQS--GSSNSSE--------------LSKCDEEESFFELLSRF--QSER 457
GK S L C+ E+ E+L + Q +
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 458 MDDQRCSLSARQSENKENLQRITNTKKSQPSAPRATTI------PAH------------T 499
R S+ ++Q + T
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 500 PGDDDLLDMIVGLQSKR--MDEQRAALPHLADRENAIPDDGFLDMLIRCQGARLEDQRSH 557
+ D + + +D L PD+ +L++ R +D
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTL---------TPDEV-KSLLLKYLDCRPQD---- 317
Query: 558 LPQEGSTV-P 566
LP+E T P
Sbjct: 318 LPREVLTTNP 327
Score = 55.6 bits (133), Expect = 3e-08
Identities = 83/555 (14%), Positives = 156/555 (28%), Gaps = 161/555 (29%)
Query: 75 DYQKAM-QYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL 133
+Y+ M + + + + L N +V KY+ V R L+ +L
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRD---RLYNDNQVFAKYN---VS--R-LQPYLKL 140
Query: 134 NDKLSEGRALYNLGNVYHAKGKAIGK---VGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190
L E R N+ + G GK VCL ++
Sbjct: 141 RQALLELRPAKNVL-IDGVLG--SGKTWVALD-----------VCLSYKVQ--------- 177
Query: 191 KEINDTAAQGRACGNLGNTYYL-LGNFK---------QAIYYHQERLKIAREFGDKAAER 240
C ++L L N Q + Y + +R +
Sbjct: 178 ------------CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 241 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD-RAVEA--QACYSLGNTYTLLRDYP 297
R +S L S+ Y+ L++ ++ + +A A +C L T R
Sbjct: 226 RIHSIQAELRRLL-----KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT----RF-- 274
Query: 298 TAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKAL-YFATKHLEISKQ---- 352
+Q+ D + + H+ ++ K+L+ Q
Sbjct: 275 -------------KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQDLPR 320
Query: 353 ---LGDPL--GQVTA-------------QMNVTDLRKALGMSTNDLSPDSLQLINSY--- 391
+P + +N L + S N L P + +
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR--KMFDRL 378
Query: 392 ----ANANQPSPGVRRY--NRVRRSSMEQLDLIKLTPENKGKQSGSSNSSELSKCDEEES 445
+A+ P+ + + ++ M ++ + K S L + +ES
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH-------KYS-------LVEKQPKES 424
Query: 446 FFELLSRFQSERMDDQRCSLSARQSENKENL-QRITNTKKSQPSAPRATTIPAHTPGDDD 504
+ S + + + EN+ L + I + + IP P D
Sbjct: 425 TISIPSIYLELK----------VKLENEYALHRSIVDHYNIPKTFDSDDLIP---PYLDQ 471
Query: 505 LLDMIVG--LQSKRMDEQRAALPHLADRENAIPDDGFLDMLIRCQGARLEDQRSHLPQEG 562
+G L++ E+ + D FL+ IR S L
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMV------FLDFRFLEQKIRHDSTAWNASGSILN--- 522
Query: 563 STVPDEDFF-SLITR 576
T+ F+ I
Sbjct: 523 -TLQQLKFYKPYICD 536
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 51.7 bits (124), Expect = 5e-08
Identities = 15/131 (11%), Positives = 38/131 (29%), Gaps = 32/131 (24%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
+Y+ ++ KG+ ++EA ++ + + +
Sbjct: 38 DIYSYAYDFYNKGR--------------------IEEAEVFFRF--LCIYDFYNV----D 71
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
L Y + F+QA + + + + G + L A E
Sbjct: 72 YIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY------TPVFHTGQCQLRLKAPLKAKE 125
Query: 262 HYKRTLVLAQD 272
++ + + D
Sbjct: 126 CFELVIQHSND 136
Score = 49.0 bits (117), Expect = 4e-07
Identities = 11/130 (8%), Positives = 34/130 (26%), Gaps = 26/130 (20%)
Query: 57 RTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKY 116
+ IY ++ G ++A + + L ++ ++
Sbjct: 34 DMMDDIY-SYAYDFYNKGRIEEAEVFFRFLCIYDFY------NVDYIMGLAAIYQIKEQF 86
Query: 117 DEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCL 176
+A + + ++ +++ G P + K C
Sbjct: 87 QQAADLYAVAFALGK------NDYTPVFHTGQCQLRLKA-------------PLKAKECF 127
Query: 177 QEAIKYYEQN 186
+ I++
Sbjct: 128 ELVIQHSNDE 137
Score = 48.6 bits (116), Expect = 6e-07
Identities = 14/134 (10%), Positives = 32/134 (23%), Gaps = 12/134 (8%)
Query: 169 PEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLK 228
E + I L + +Y G ++A + +
Sbjct: 5 ITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI 64
Query: 229 IAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGN 288
L + ++Q A++ Y L ++ + + G
Sbjct: 65 Y------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN------DYTPVFHTGQ 112
Query: 289 TYTLLRDYPTAIDY 302
L+ A +
Sbjct: 113 CQLRLKAPLKAKEC 126
Score = 38.2 bits (89), Expect = 0.002
Identities = 13/128 (10%), Positives = 28/128 (21%), Gaps = 14/128 (10%)
Query: 225 ERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 284
LK D + + G + A ++ +
Sbjct: 23 ATLKDINAIPDDMMD--DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY------NVDYIM 74
Query: 285 SLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFAT 344
L Y + + A D + + + + + G KA
Sbjct: 75 GLAAIYQIKEQFQQAADLYAVAFALGK------NDYTPVFHTGQCQLRLKAPLKAKECFE 128
Query: 345 KHLEISKQ 352
++ S
Sbjct: 129 LVIQHSND 136
Score = 31.7 bits (72), Expect = 0.35
Identities = 7/61 (11%), Positives = 15/61 (24%), Gaps = 4/61 (6%)
Query: 32 LCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLAR 91
+ + A G +D G L KA + + + +
Sbjct: 80 YQIKEQFQQAADLYAVAFALGKNDYT----PVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
Query: 92 N 92
+
Sbjct: 136 D 136
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 49.6 bits (119), Expect = 7e-08
Identities = 14/102 (13%), Positives = 35/102 (34%), Gaps = 14/102 (13%)
Query: 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYK 264
L + N +A+ +E ++ ++ +LG + L A + Y
Sbjct: 12 ALAQEHLKHDNASRALALFEELVETDPDYVG------TYYHLGKLYERLDRTDDAIDTYA 65
Query: 265 RTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH 306
+ + +A++ G + L + +++H H
Sbjct: 66 QGIEVAREEGT----QKDLSELQDAKLKAE----GLEHHHHH 99
Score = 48.0 bits (115), Expect = 3e-07
Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 30/122 (24%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
Y L + A+ +E+ + E +
Sbjct: 9 TRYALAQEHLKHDN--------------------ASRALALFEE--LV--ETDPDYVG-- 42
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
+LG Y L AI + + +++ARE G + + S L ++ + +
Sbjct: 43 TYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ----KDLSELQDAKLKAEGLEHHHH 98
Query: 262 HY 263
H+
Sbjct: 99 HH 100
Score = 47.6 bits (114), Expect = 4e-07
Identities = 10/89 (11%), Positives = 33/89 (37%), Gaps = 10/89 (11%)
Query: 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121
L + + +A+ ++ + + + +LG + + + D+A+
Sbjct: 9 TRYALAQEHLKHDNASRALALFEELVETDPDY------VGTYYHLGKLYERLDRTDDAID 62
Query: 122 CCKRHLEISRQLNDKLSEGRALYNLGNVY 150
+ +E++R+ + + L L +
Sbjct: 63 TYAQGIEVAREEGTQ----KDLSELQDAK 87
Score = 38.8 bits (91), Expect = 5e-04
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 8/91 (8%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
+ K + +A F+ ++ D Y LG Y L A+ + Q +
Sbjct: 14 AQEHLKHDNASRALALFEELVETDPDY----VGTYYHLGKLYERLDRTDDAIDTYAQGIE 69
Query: 89 LARNMEDKLGEAKSSGNLGNTLKVMGKYDEA 119
+AR G K L + +
Sbjct: 70 VAREE----GTQKDLSELQDAKLKAEGLEHH 96
Score = 36.1 bits (84), Expect = 0.004
Identities = 12/61 (19%), Positives = 16/61 (26%), Gaps = 6/61 (9%)
Query: 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 301
L H+ A ++ + D Y LG Y L AID
Sbjct: 9 TRYALAQEHLKHDNASRALALFEELVETDPDY------VGTYYHLGKLYERLDRTDDAID 62
Query: 302 Y 302
Sbjct: 63 T 63
Score = 28.0 bits (63), Expect = 2.9
Identities = 8/76 (10%), Positives = 24/76 (31%), Gaps = 6/76 (7%)
Query: 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKA 339
Y+L + + A+ + + + LG + + A
Sbjct: 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVG------TYYHLGKLYERLDRTDDA 60
Query: 340 LYFATKHLEISKQLGD 355
+ + +E++++ G
Sbjct: 61 IDTYAQGIEVAREEGT 76
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 49.7 bits (119), Expect = 2e-07
Identities = 24/145 (16%), Positives = 39/145 (26%), Gaps = 32/145 (22%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
LY LG + GK +A K ++ L R
Sbjct: 20 QLYALGFNQYQAGK--------------------WDDAQKIFQALCMLD------HYDAR 53
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
LG LG ++QA+ + + R + H+ LG+ A
Sbjct: 54 YFLGLGACRQSLGLYEQALQSYSYGALMDINEP------RFPFHAAECHLQLGDLDGAES 107
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSL 286
+ LA A ++
Sbjct: 108 GFYSARALAAAQPAHEALAARAGAM 132
Score = 49.7 bits (119), Expect = 2e-07
Identities = 23/150 (15%), Positives = 43/150 (28%), Gaps = 33/150 (22%)
Query: 57 RTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKY 116
TL +Y LG + G + A + + L +A+ LG + +G Y
Sbjct: 16 DTLEQLY-ALGFNQYQAGKWDDAQKIFQALCMLDHY------DARYFLGLGACRQSLGLY 68
Query: 117 DEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCL 176
++A+ + ++E R ++ + G L
Sbjct: 69 EQALQSYSYGALM------DINEPRFPFHAAECHLQLGD--------------------L 102
Query: 177 QEAIKYYEQNLALMKEINDTAAQGRACGNL 206
A + AL A G +
Sbjct: 103 DGAESGFYSARALAAAQPAHEALAARAGAM 132
Score = 30.9 bits (70), Expect = 0.55
Identities = 14/109 (12%), Positives = 30/109 (27%), Gaps = 14/109 (12%)
Query: 279 EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEK 338
+ Y+LG + A + L + + R LG + G +E+
Sbjct: 17 TLEQLYALGFNQYQAGKWDDAQKI-FQALCMLDHY-----DARYFLGLGACRQSLGLYEQ 70
Query: 339 ALYFATKHLEISKQLGDP---LGQVTAQMN-----VTDLRKALGMSTND 379
AL + + + Q+ + A ++
Sbjct: 71 ALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 48.6 bits (116), Expect = 3e-07
Identities = 18/136 (13%), Positives = 29/136 (21%), Gaps = 32/136 (23%)
Query: 132 QLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMK 191
+ N+ G L EA +E
Sbjct: 9 EANNPYMYHENPMEEGLSMLKLAN--------------------LAEAALAFEAVC---- 44
Query: 192 EINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHI 251
+ + A +LG T AI + + ++ L SH
Sbjct: 45 QKEPEREE--AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA------VHAALAVSHT 96
Query: 252 FLGEYQAASEHYKRTL 267
AA + L
Sbjct: 97 NEHNANAALASLRAWL 112
Score = 46.7 bits (111), Expect = 1e-06
Identities = 16/131 (12%), Positives = 30/131 (22%), Gaps = 32/131 (24%)
Query: 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQD 164
G ++ + EA + + Q + E A +LG K
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVC----QKEPEREE--AWRSLGLTQAENEK--------- 66
Query: 165 PGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQ 224
AI L + L ++ N A+ +
Sbjct: 67 -----------DGLAIIALNHARMLDPKDIA------VHAALAVSHTNEHNANAALASLR 109
Query: 225 ERLKIAREFGD 235
L ++
Sbjct: 110 AWLLSQPQYEQ 120
Score = 45.5 bits (108), Expect = 3e-06
Identities = 14/105 (13%), Positives = 30/105 (28%), Gaps = 12/105 (11%)
Query: 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYK 264
G + L N +A + + E + A +LG + + A
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREE------AWRSLGLTQAENEKDGLAIIALN 75
Query: 265 RTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 309
+L + +L ++T + A+ L+
Sbjct: 76 HARMLDPK------DIAVHAALAVSHTNEHNANAALASLRAWLLS 114
Score = 45.1 bits (107), Expect = 4e-06
Identities = 13/102 (12%), Positives = 23/102 (22%), Gaps = 10/102 (9%)
Query: 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDL 87
EG + K + F+A Q + + LG A+
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPER----EEAWRSLGLTQAENEKDGLAIIALNHAR 78
Query: 88 TLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEI 129
L L + + A+ + L
Sbjct: 79 MLDPKDIAVH------AALAVSHTNEHNANAALASLRAWLLS 114
Score = 43.2 bits (102), Expect = 2e-05
Identities = 11/125 (8%), Positives = 26/125 (20%), Gaps = 32/125 (25%)
Query: 65 QLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCK 124
+ G + L + +A + ++ +LG T K A++
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALN 75
Query: 125 RHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYE 184
+ + L + + A+
Sbjct: 76 HARMLDPKDIA------VHAALAVSHTNEHN--------------------ANAALASLR 109
Query: 185 QNLAL 189
L
Sbjct: 110 AWLLS 114
Score = 40.9 bits (96), Expect = 1e-04
Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 12/105 (11%)
Query: 245 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 304
G S + L A+ ++ + +A SLG T AI
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALN 75
Query: 305 RHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
++ + + +L +H N AL L
Sbjct: 76 HARMLDPKDIA------VHAALAVSHTNEHNANAALASLRAWLLS 114
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown
function, SEL1-like repeats; 1.68A {Escherichia coli}
Length = 490
Score = 50.7 bits (122), Expect = 8e-07
Identities = 56/312 (17%), Positives = 99/312 (31%), Gaps = 102/312 (32%)
Query: 65 QLGNAYFY-LG---DYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLG----NTLKVMGKY 116
+LG YF D +AM + ++ + G + LG N V Y
Sbjct: 44 ELGYRYFQGNETTKDLTQAMDWFRR--------AAEQGYTPAEYVLGLRYMNGEGVPQDY 95
Query: 117 DEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCL 176
+A+ + + +A NLG +YH G + D
Sbjct: 96 AQAV----IWYKKAALKGL----PQAQQNLGVMYHE-----GNGVKVDK----------- 131
Query: 177 QEAIKYYEQNLALMKEINDTAAQG--RACGNLGNTYYLLG-----NFKQAIYYHQERLKI 229
E++K++ A A QG ++G+ Y G ++ A ++
Sbjct: 132 AESVKWFRL--A--------AEQGRDSGQQSMGD-AYFEGDGVTRDYVMAREWYS----- 175
Query: 230 AREFGDKAAER---RANSNLGNSHIFLGE-----YQAASEHYKRTLVLAQDLGDRAVEAQ 281
KAAE+ + + LG + G +++ Y++ + GD
Sbjct: 176 ------KAAEQGNVWSCNQLGYMY-SRGLGVERNDAISAQWYRK----SATSGD----EL 220
Query: 282 ACYSLGNTYT----LLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAA-RG-- 334
L + Y + +DY + + A+Q G A + LG
Sbjct: 221 GQLHLADMYYFGIGVTQDYTQSRVLFSQ---SAEQ-----GNSIAQFRLGYILEQGLAGA 272
Query: 335 -NHEKALYFATK 345
KAL + K
Sbjct: 273 KEPLKALEWYRK 284
Score = 29.5 bits (67), Expect = 3.7
Identities = 37/227 (16%), Positives = 72/227 (31%), Gaps = 66/227 (29%)
Query: 37 DCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLG---DYQKAMQYHKQDLTLARNM 93
+ ++++ + + G A LG YF LG +++KA+++ ++ A
Sbjct: 311 NREQAISWYTKSAEQGDAT-----AQA-NLGAIYFRLGSEEEHKKAVEWFRK---AA--- 358
Query: 94 EDKLGEAKSSGNLGNTLKVMGK-----YDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148
GE + NLGN L GK +A + + + A LG
Sbjct: 359 --AKGEKAAQFNLGNALL-QGKGVKKDEQQAA----IWMRKAAEQGLS----AAQVQLGE 407
Query: 149 VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQG--RACGNL 206
+Y G ++D +A +++ A +
Sbjct: 408 IY-----YYGLGVERD-----------YVQAWAWFD--TA--------STNDMNLFGTEN 441
Query: 207 GNTYYLLGNFKQAIYYHQERLKIAREFGDKAAER---RANSNLGNSH 250
N KQ Q+ +++++ +K A R S
Sbjct: 442 RNITEKKLTAKQL----QQAELLSQQYIEKYAPEAWARMQKLKAQSA 484
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 46.1 bits (109), Expect = 3e-06
Identities = 19/145 (13%), Positives = 39/145 (26%), Gaps = 32/145 (22%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
LY+L + G ++A ++ + + D+ R
Sbjct: 23 QLYSLAFNQYQSGX--------------------YEDAHXVFQA--LCVLDHYDS----R 56
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
LG +G + AI+ + + E R + + GE A
Sbjct: 57 FFLGLGACRQAMGQYDLAIHSYSYGAVM------DIXEPRFPFHAAECLLQXGELAEAES 110
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSL 286
L + + + S+
Sbjct: 111 GLFLAQELIANXPEFXELSTRVSSM 135
Score = 46.1 bits (109), Expect = 3e-06
Identities = 23/147 (15%), Positives = 43/147 (29%), Gaps = 29/147 (19%)
Query: 36 GDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMED 95
G +G + +D L +Y L + G Y+ A + L
Sbjct: 1 GPLGSGGGTIAMLNEISSDTL---EQLY-SLAFNQYQSGXYEDAHXVFQALCVLDHY--- 53
Query: 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK 155
+++ LG + MG+YD A+ + + E R ++ G+
Sbjct: 54 ---DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM------DIXEPRFPFHAAECLLQXGE 104
Query: 156 AIGKVGQQDPGEYPEEVKVCLQEAIKY 182
E + L A +
Sbjct: 105 -------------LAEAESGLFLAQEL 118
Score = 39.9 bits (93), Expect = 5e-04
Identities = 14/98 (14%), Positives = 24/98 (24%), Gaps = 12/98 (12%)
Query: 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYK 264
+L Y G ++ A Q + LG +G+Y A Y
Sbjct: 26 SLAFNQYQSGXYEDAHXVFQALCVLDHYDSR------FFLGLGACRQAMGQYDLAIHSYS 79
Query: 265 RTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
V+ E + + + A
Sbjct: 80 YGAVM------DIXEPRFPFHAAECLLQXGELAEAESG 111
Score = 29.5 bits (66), Expect = 1.5
Identities = 13/104 (12%), Positives = 26/104 (25%), Gaps = 12/104 (11%)
Query: 254 GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 313
G + ++ D + YSL Y A ++
Sbjct: 1 GPLGSGGGTIAMLNEISSD------TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY- 53
Query: 314 MDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPL 357
+ R LG A G ++ A++ + +
Sbjct: 54 -----DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFP 92
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 43.7 bits (104), Expect = 2e-05
Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 33/140 (23%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
GN + +++ A+ ++ + + L A N +G Y A+
Sbjct: 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPA------NAVYFCNRAAAYSKLGNYAGAVQD 68
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
C+R + ++ S+ A +G + K EA+ Y
Sbjct: 69 CERAIC----IDPAYSK--AYGRMGLALSSLNK--------------------HVEAVAY 102
Query: 183 YEQNLALMKEINDTAAQGRA 202
Y++ L L + N+T
Sbjct: 103 YKKALELDPD-NETYKSNLK 121
Score = 43.0 bits (102), Expect = 4e-05
Identities = 29/156 (18%), Positives = 48/156 (30%), Gaps = 38/156 (24%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
L GN + A+ +Y + A+ E+N A
Sbjct: 14 RLKTEGNEQMKVEN--------------------FEAAVHFYGK--AI--ELNPANA--V 47
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
N Y LGN+ A+ + + I + A +G + L ++ A
Sbjct: 48 YFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK------AYGRMGLALSSLNKHVEAVA 101
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP 297
+YK+ L L D +L LR+ P
Sbjct: 102 YYKKALELDPD------NETYKSNLKIAELKLREAP 131
Score = 30.3 bits (69), Expect = 0.70
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLA---RNMEDKLGEAKS 102
Y ++G A L + +A+ Y+K+ L L + L A+
Sbjct: 83 YGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125
Score = 29.9 bits (68), Expect = 0.92
Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 32/138 (23%)
Query: 92 NMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYH 151
E+ EA+ GN + ++ A+ + +E++ + N Y
Sbjct: 4 GSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNP------ANAVYFCNRAAAYS 57
Query: 152 AKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYY 211
G A++ E+ A+ I+ + +A G +G
Sbjct: 58 KLGN--------------------YAGAVQDCER--AI--CIDPAYS--KAYGRMGLALS 91
Query: 212 LLGNFKQAIYYHQERLKI 229
L +A+ Y+++ L++
Sbjct: 92 SLNKHVEAVAYYKKALEL 109
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 45.8 bits (108), Expect = 3e-05
Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 28/159 (17%)
Query: 53 TDDLRTLSAIYSQLGNAYFYLGDYQKAM-QYHK------QDLTLARNMEDKLGEAKSS-- 103
T + +AI + G YF G Y +A+ QY K + L+ +
Sbjct: 261 TKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF 320
Query: 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQ 163
NL + +Y +A+ CC + L + N+K LY G
Sbjct: 321 LNLAMCYLKLREYTKAVECCDKALGLDSA-NEK-----GLYRRGEAQLLM---------- 364
Query: 164 DPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRA 202
E+ E K ++ ++ QN A +I+ + +
Sbjct: 365 --NEF-ESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE 400
Score = 32.3 bits (73), Expect = 0.51
Identities = 20/118 (16%), Positives = 45/118 (38%), Gaps = 25/118 (21%)
Query: 177 QEAIKYYEQNLALMKEINDT---------AAQGRACGNLGNTYYLLGNFKQAIYYHQERL 227
+A+ Y + ++ ++ + A NL Y L + +A+ + L
Sbjct: 285 MQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344
Query: 228 KIAREFGD----KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQ 281
+ D K RR G + + + E+++A +++ VL + ++A Q
Sbjct: 345 GL-----DSANEKGLYRR-----GEAQLLMNEFESAKGDFEK--VLEVNPQNKAARLQ 390
Score = 30.4 bits (68), Expect = 1.9
Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 15/105 (14%)
Query: 207 GNTYYLLGNFKQAI-YYHQ--ERLKIAREFGD------KAAERRANSNLGNSHIFLGEYQ 257
G Y+ G + QA+ Y + L++ + ++ A NL ++ L EY
Sbjct: 275 GTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT 334
Query: 258 AASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
A E + L D + + Y G L+ ++ +A
Sbjct: 335 KAVECCDK--ALGLDSAN----EKGLYRRGEAQLLMNEFESAKGD 373
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 45.5 bits (107), Expect = 3e-05
Identities = 20/170 (11%), Positives = 39/170 (22%), Gaps = 30/170 (17%)
Query: 23 LELALEGERLCKAGDC---RAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKA 79
L + GD +Q+ + + + +K
Sbjct: 197 LTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQ 256
Query: 80 MQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139
+ ++ + + + + V GK DE+ +++
Sbjct: 257 LAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW------ 310
Query: 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189
LG VY KG +EA Y L
Sbjct: 311 -LNYVLLGKVYEMKGM--------------------NREAADAYLTAFNL 339
Score = 38.9 bits (90), Expect = 0.003
Identities = 7/93 (7%), Positives = 25/93 (26%), Gaps = 7/93 (7%)
Query: 177 QEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDK 236
++ + + + + + + + G ++ + + +
Sbjct: 254 EKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW--- 310
Query: 237 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 269
LG + G + A++ Y L
Sbjct: 311 ----LNYVLLGKVYEMKGMNREAADAYLTAFNL 339
Score = 36.6 bits (84), Expect = 0.020
Identities = 14/142 (9%), Positives = 33/142 (23%), Gaps = 10/142 (7%)
Query: 209 TYYLLGNFKQAIYYHQERLKIAREFGDKAAER-----RANSNLGNSHIFLGEYQAASEHY 263
T + + ++ + L A E + + A + I E
Sbjct: 198 TNFYQAH-DYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQ 256
Query: 264 KRTLV----LAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 319
L L + + + + + + + ++ V
Sbjct: 257 LAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLL 316
Query: 320 GRACWSLGNAHAARGNHEKALY 341
G+ G A + A
Sbjct: 317 GKVYEMKGMNREAADAYLTAFN 338
Score = 36.2 bits (83), Expect = 0.025
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 9/88 (10%)
Query: 43 AFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102
+ +L LS IY + G ++ Q + L + +
Sbjct: 262 TEIDNIVTL--PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-------WLN 312
Query: 103 SGNLGNTLKVMGKYDEAMVCCKRHLEIS 130
LG ++ G EA +
Sbjct: 313 YVLLGKVYEMKGMNREAADAYLTAFNLR 340
Score = 30.8 bits (69), Expect = 1.1
Identities = 7/97 (7%), Positives = 24/97 (24%), Gaps = 2/97 (2%)
Query: 254 GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 313
ASE + + + E + ++ L + + L
Sbjct: 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLD--EKQLAALNTEIDNIVTL 270
Query: 314 MDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350
+ + +G +++ +++
Sbjct: 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix,
right handed super helix, modular structure', hydrolase;
1.95A {Helicobacter pylori} SCOP: a.118.18.1
Length = 138
Score = 42.1 bits (100), Expect = 7e-05
Identities = 27/147 (18%), Positives = 45/147 (30%), Gaps = 54/147 (36%)
Query: 176 LQEAIKYYEQ-----------NLALMKEINDT---------AAQG--RACGNLGNTYYL- 212
L++AI+YY + +L +IN C LG+ Y
Sbjct: 11 LKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENG 70
Query: 213 LG---NFKQAIYYHQERLKIAREFGDKAAER---RANSNLGNSHIFLGE-----YQAASE 261
+ ++A Y+ KA LG + G+ + A +
Sbjct: 71 KYVKKDLRKAAQYYS-----------KACGLNDQDGCLILGYKQ-YAGKGVVKNEKQAVK 118
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGN 288
+++ A LG AC L N
Sbjct: 119 TFEK----ACRLGS----EDACGILNN 137
Score = 34.0 bits (79), Expect = 0.050
Identities = 32/196 (16%), Positives = 45/196 (22%), Gaps = 99/196 (50%)
Query: 67 GNAYFYLG-----DYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121
L + QK QY + + L +
Sbjct: 27 MFGCLSLVSNSQINKQKLFQYLSK-----------------ACELNS------------- 56
Query: 122 CCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181
G LG+ Y GK ++D L++A +
Sbjct: 57 ------------------GNGCRFLGDFYEN-----GKYVKKD-----------LRKAAQ 82
Query: 182 YYEQNLALMKEINDTAAQG--RACGNLGNTYYL-LG---NFKQAIYYHQERLKIAREFGD 235
YY + A C LG Y G N KQA+ +
Sbjct: 83 YYSK--A--------CGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFE----------- 121
Query: 236 KAAER---RANSNLGN 248
KA A L N
Sbjct: 122 KACRLGSEDACGILNN 137
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural
genomics, joint center FO structural genomics, JCSG;
HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Length = 212
Score = 43.0 bits (102), Expect = 1e-04
Identities = 26/176 (14%), Positives = 43/176 (24%), Gaps = 52/176 (29%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQG- 200
AL L + Q D +A + E+ G
Sbjct: 52 ALALLAQLKIRNP------QQADY-----------PQARQLAEK----------AVEAGS 84
Query: 201 -RACGNLGNTYYL-LG---NFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGE 255
L + AI L+ A + A A LG + G
Sbjct: 85 KSGEIVLARVLVNRQAGATDVAHAITL----LQDAARDSESDAAVDAQMLLGLIY-ASGV 139
Query: 256 -----YQAASEHYKRTLVLAQDLGDRAVEAQ----ACYSLGNTYTLLRDYPTAIDY 302
ASE++K + L A+ + G + + A+ +
Sbjct: 140 HGPEDDVKASEYFKG----SSSLSRTG-YAEYWAGMMFQQGEKGFIEPNKQKALHW 190
Score = 40.7 bits (96), Expect = 5e-04
Identities = 34/180 (18%), Positives = 54/180 (30%), Gaps = 49/180 (27%)
Query: 178 EAIKYYEQNLALMKEINDTAAQG--RACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD 235
E Y+Q A G RA L +T+ G++++A Y+ Q
Sbjct: 4 EPGSQYQQ----------QAEAGDRRAQYYLADTWVSSGDYQKAEYWAQ----------- 42
Query: 236 KAAER---RANSNLGNSHIFLGE---YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNT 289
KAA + A + L I + Y A + ++ A + G L
Sbjct: 43 KAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEK----AVEAGS----KSGEIVLARV 94
Query: 290 YT----LLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAA-RG---NHEKALY 341
D AI A + + A LG +A+ + KA
Sbjct: 95 LVNRQAGATDVAHAITLLQD----AARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150
Score = 29.9 bits (68), Expect = 1.8
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 15/83 (18%)
Query: 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARG---NH 336
+A Y L +T+ DY A + + A Q G+G A L ++
Sbjct: 18 RRAQYYLADTWVSSGDYQKAEYWAQK---AAAQ-----GDGDALALLAQLKIRNPQQADY 69
Query: 337 EKALYFATKHLEISKQLGDPLGQ 359
+A A K + + G G+
Sbjct: 70 PQARQLAEK----AVEAGSKSGE 88
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 39.9 bits (94), Expect = 3e-04
Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 13/119 (10%)
Query: 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYH 83
EL +G + G+ + + AI+ + +YS AY GDYQKA
Sbjct: 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAY--- 58
Query: 84 KQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEI---SRQLNDKLSE 139
+D +++ K L+ + +++EA + L+ + QL + L
Sbjct: 59 -EDGCKTVDLKPDW--GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114
Score = 29.8 bits (68), Expect = 0.78
Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 18/120 (15%)
Query: 65 QLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCK 124
+ GN +G+ A+Q + + + L + N G Y +A
Sbjct: 9 EKGNKALSVGNIDDALQCYSEAIKLDPH------NHVLYSNRSAAYAKKGDYQKAYEDGC 62
Query: 125 RHLEISRQLNDKLS-----EGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEA 179
+ ++ L + AL L AK + + + + ++K LQ
Sbjct: 63 KTVD----LKPDWGKGYSRKAAALEFLNRFEEAK-RTYEEGLKHEANN--PQLKEGLQNM 115
Score = 28.7 bits (65), Expect = 2.3
Identities = 8/43 (18%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARN---MEDKLGEAKS 102
YS+ A +L +++A + +++ L N +++ L ++
Sbjct: 75 YSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117
Score = 28.3 bits (64), Expect = 3.2
Identities = 15/93 (16%), Positives = 37/93 (39%), Gaps = 12/93 (12%)
Query: 177 QEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDK 236
+A++ Y + A+ +++ N Y G++++A + + + ++G K
Sbjct: 21 DDALQCYSE--AI--KLDPHNH--VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG-K 73
Query: 237 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 269
R+ + FL ++ A Y+ L
Sbjct: 74 GYSRK-----AAALEFLNRFEEAKRTYEEGLKH 101
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 40.6 bits (94), Expect = 3e-04
Identities = 24/158 (15%), Positives = 59/158 (37%), Gaps = 9/158 (5%)
Query: 94 EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAK 153
++ A + + V G+YDEA C+R +EIS + + + A ++ +
Sbjct: 5 LKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDA-FCHAGL 63
Query: 154 GKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLL 213
+A+ + +E +A+ Y+ + L + ++ A + L
Sbjct: 64 AEALAGLRS------FDEALHSADKALHYFNRRGELNQ--DEGKLWISAVYSRALALDGL 115
Query: 214 GNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHI 251
G +A+ ++ +++ E + + + I
Sbjct: 116 GRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRI 153
Score = 39.1 bits (90), Expect = 0.001
Identities = 18/129 (13%), Positives = 43/129 (33%), Gaps = 13/129 (10%)
Query: 28 EGERLCKAGDCRAGVAFFQAAIQ--------AGTDDLRTLSAIYSQLGNAYFYLGDYQKA 79
+ +R AG+ A + A++ D + ++ L A L + +A
Sbjct: 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEA 76
Query: 80 MQYHKQDLTLARNMEDKLGE-----AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLN 134
+ + L + + + + L +G+ EAM K+ +E+ +
Sbjct: 77 LHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136
Query: 135 DKLSEGRAL 143
+ +
Sbjct: 137 GETPGKERM 145
Score = 37.2 bits (85), Expect = 0.005
Identities = 25/154 (16%), Positives = 48/154 (31%), Gaps = 15/154 (9%)
Query: 234 GDKAAERRANSNL----GNSHIFLGEYQAASEHYKRTLVLAQDLGD------RAVEAQAC 283
G K + + L + GEY A+ + +R + ++ + +A
Sbjct: 1 GMKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCH 60
Query: 284 YSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACW-----SLGNAHAARGNHEK 338
L LR + A+ + L + + + W S A G +
Sbjct: 61 AGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAE 120
Query: 339 ALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKA 372
A+ K +E+ ++ M V R A
Sbjct: 121 AMPEFKKVVEMIEERKGETPGKERMMEVAIDRIA 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 40.5 bits (95), Expect = 4e-04
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 10/106 (9%)
Query: 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYH 83
+L EG + + + A+ + S AY G ++KA
Sbjct: 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPAN----PIYLSNRAAAYSASGQHEKAA--- 65
Query: 84 KQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEI 129
+D LA ++ K +K+ LG M Y A ++ +E
Sbjct: 66 -EDAELATVVDPKY--SKAWSRLGLARFDMADYKGAKEAYEKGIEA 108
Score = 40.5 bits (95), Expect = 4e-04
Identities = 26/151 (17%), Positives = 47/151 (31%), Gaps = 19/151 (12%)
Query: 65 QLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCK 124
GNA +Y KA+ + Q L++A N G++++A +
Sbjct: 16 SEGNAAMARKEYSKAIDLYTQALSIAPA------NPIYLSNRAAAYSASGQHEKAAEDAE 69
Query: 125 RHLEISRQLNDKLSEGRALYNLGNVYHAKGK------AIGKVGQQDPGEYPEEVKVCLQE 178
++ K S +A LG A K + + + +K L+
Sbjct: 70 LATV----VDPKYS--KAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123
Query: 179 AIKYYEQ-NLALMKEINDTAAQGRACGNLGN 208
+ E+ N +D A G
Sbjct: 124 TKRKIEEANRGAEPPADDVDDAAGASRGAGG 154
Score = 29.7 bits (67), Expect = 1.5
Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 32/128 (25%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
L + GN A+ + +AI Y Q AL I
Sbjct: 13 KLKSEGNAAMARKE--------------------YSKAIDLYTQ--AL--SIAPANP--I 46
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
N Y G ++A + + ++ KA R G + + +Y+ A E
Sbjct: 47 YLSNRAAAYSASGQHEKAAEDAELATVVDPKYS-KAWSRL-----GLARFDMADYKGAKE 100
Query: 262 HYKRTLVL 269
Y++ +
Sbjct: 101 AYEKGIEA 108
Score = 29.3 bits (66), Expect = 2.0
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDK 96
+S+LG A F + DY+ A + +++ + N
Sbjct: 82 WSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSD 115
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 41.8 bits (98), Expect = 4e-04
Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 28/137 (20%)
Query: 67 GNAYFYLGD-------YQKAMQYHKQDLTLARNMEDKLGEAKSS--GNLGNTLKVMGKYD 117
G YF G Y+K + + + + + + K + + NL + +
Sbjct: 154 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFS 213
Query: 118 EAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQ 177
A+ C + LE+ N+K L G + A E + Q
Sbjct: 214 AAIESCNKALELDSN-NEK-----GLSRRGEAHLAVND-------------FELARADFQ 254
Query: 178 EAIKYYEQNLALMKEIN 194
+ ++ Y N A ++
Sbjct: 255 KVLQLYPNNKAAKTQLA 271
Score = 29.1 bits (65), Expect = 4.0
Identities = 22/137 (16%), Positives = 47/137 (34%), Gaps = 27/137 (19%)
Query: 224 QERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQ-- 281
+E+L+ + ++ G + G+Y+ A YK+ + + + E
Sbjct: 141 EEKLEQSTIVKER----------GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQK 190
Query: 282 ------ACYS-LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE-GRACWSLGNAHAAR 333
A + L + L+ + AI+ + ++ + G AH A
Sbjct: 191 AQALRLASHLNLAMCHLKLQAFSAAIES-------CNKALELDSNNEKGLSRRGEAHLAV 243
Query: 334 GNHEKALYFATKHLEIS 350
+ E A K L++
Sbjct: 244 NDFELARADFQKVLQLY 260
Score = 28.3 bits (63), Expect = 6.6
Identities = 26/163 (15%), Positives = 55/163 (33%), Gaps = 22/163 (13%)
Query: 149 VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGN 208
+ + GK ++ +Y +K + + +E N +E + + + G
Sbjct: 103 AFGSVGKEKFQIPPNAELKYELHLKSFEKAK-ESWEMN---SEEKLEQSTIVK---ERGT 155
Query: 209 TYYLLGNFKQAIYYHQERLKIAREFGDKAAERRA---------NSNLGNSHIFLGEYQAA 259
Y+ G +KQA+ +++ + + E + NL H+ L + AA
Sbjct: 156 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAA 215
Query: 260 SEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
E L D + + G + + D+ A
Sbjct: 216 IESC--NKALELDSNN----EKGLSRRGEAHLAVNDFELARAD 252
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 38.9 bits (91), Expect = 4e-04
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYK 264
G+ + A+ +E L+ D+A +GN++ LG++Q A +Y+
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEA-----YYLMGNAYRKLGDWQKALNNYQ 59
Query: 265 RTLVLAQDLGDRAVEAQ 281
+ L D A++A+
Sbjct: 60 SAIELNPD--SPALQAR 74
Score = 38.9 bits (91), Expect = 5e-04
Identities = 13/73 (17%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD 235
++ A++ E+ L E A +GN Y LG++++A+ +Q +++ +
Sbjct: 16 IENALQALEE--FLQTEPVGKD---EAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS-- 68
Query: 236 KAAERRANSNLGN 248
+A + +
Sbjct: 69 --PALQARKMVMD 79
Score = 36.2 bits (84), Expect = 0.004
Identities = 14/93 (15%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 65 QLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCK 124
+ GD + A+Q ++ L + +G+ ++ +GN + +G + +A+ +
Sbjct: 5 KTIKELINQGDIENALQALEEFLQT-----EPVGKDEAYYLMGNAYRKLGDWQKALNNYQ 59
Query: 125 RHLEISRQLNDKLSEGRALYNLGNVYHAKGKAI 157
+E+ N +A + ++ + K +
Sbjct: 60 SAIEL----NPDSPALQARKMVMDILNFYNKDM 88
Score = 35.4 bits (82), Expect = 0.008
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 7/93 (7%)
Query: 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQY 82
++ + L GD + + +Q Y +GNAY LGD+QKA+
Sbjct: 1 MDQLKTIKELINQGDIENALQALEEFLQTEPVGK---DEAYYLMGNAYRKLGDWQKALNN 57
Query: 83 HKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGK 115
++ + L + ++ + + L K
Sbjct: 58 YQSAIELNPDSP----ALQARKMVMDILNFYNK 86
Score = 32.3 bits (74), Expect = 0.088
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 245 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
I G+ + A + + L + +A Y +GN Y L D+ A++
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPV-----GKDEAYYLMGNAYRKLGDWQKALNN 57
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 39.5 bits (93), Expect = 6e-04
Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 14/127 (11%)
Query: 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQY 82
L + +G + GD + + AI+ D + +YS Y L ++Q A++
Sbjct: 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLLEFQLALK- 71
Query: 83 HKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEI---SRQLNDKLSE 139
D +E K L+ M Y +AM ++ L++ ++ D
Sbjct: 72 ---DCEECIQLEPTF--IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 126
Query: 140 -GRALYN 145
A YN
Sbjct: 127 CMMAQYN 133
Score = 34.1 bits (79), Expect = 0.033
Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 40/164 (24%)
Query: 124 KRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183
H +N L+ + N GN KG YP+ A+K+Y
Sbjct: 2 GHHHHHHSHMNPDLAL--MVKNKGNECFQKGD------------YPQ--------AMKHY 39
Query: 184 EQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRAN 243
+ A+ + N A + N Y L F+ A+ +E +++ F K R+
Sbjct: 40 TE--AI--KRNPKDA--KLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI-KGYTRK-- 90
Query: 244 SNLGNSHIFLGEYQAASEHYKRTLVL------AQDLGDRAVEAQ 281
+ + +Y A + Y++ L L A D R + AQ
Sbjct: 91 ---AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 39.8 bits (93), Expect = 8e-04
Identities = 22/182 (12%), Positives = 48/182 (26%), Gaps = 39/182 (21%)
Query: 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYH 83
+ + A + Q I+A + ++ LG Y + DY ++ +
Sbjct: 12 RQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQ----WALLGEYYLWQNDYSNSLLAY 67
Query: 84 KQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKY---DEAMVCCKRHLEISRQLNDKLSEG 140
+Q L L + L L + + L + E
Sbjct: 68 RQALQLRGENAELY------AALATVLYYQASQHMTAQTRAMIDKALALDSN------EI 115
Query: 141 RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQG 200
AL L + + +AI+ +++ + L +
Sbjct: 116 TALMLLASDAFMQAN--------------------YAQAIELWQKVMDLNSPRINRTQLV 155
Query: 201 RA 202
+
Sbjct: 156 ES 157
Score = 36.0 bits (83), Expect = 0.014
Identities = 21/173 (12%), Positives = 41/173 (23%), Gaps = 41/173 (23%)
Query: 113 MGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEV 172
+ + + + + Q LG Y +
Sbjct: 23 QQNPEAQLQALQDKIRANPQ------NSEQWALLGEYYLWQND----------------- 59
Query: 173 KVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGN---FKQAIYYHQERLKI 229
++ Y Q L L E + L Y + Q + L +
Sbjct: 60 ---YSNSLLAYRQALQLRGENAE------LYAALATVLYYQASQHMTAQTRAMIDKALAL 110
Query: 230 AREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQA 282
E A L + Y A E +++ + L +R ++
Sbjct: 111 DSN------EITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVES 157
Score = 34.8 bits (80), Expect = 0.037
Identities = 14/138 (10%), Positives = 41/138 (29%), Gaps = 29/138 (21%)
Query: 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQD 164
LG Y +++ ++ L++ + + L V + +
Sbjct: 49 LLGEYYLWQNDYSNSLLAYRQALQLRGENAE------LYAALATVLYYQAS--------- 93
Query: 165 PGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQ 224
+ + + +A+ + A L + ++ N+ QAI Q
Sbjct: 94 -QHMTAQTRAMIDKALALDSNEI-------------TALMLLASDAFMQANYAQAIELWQ 139
Query: 225 ERLKIAREFGDKAAERRA 242
+ + + ++ +
Sbjct: 140 KVMDLNSPRINRTQLVES 157
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt
pseudomonas, protein binding; 2.50A {Pseudomonas
fluorescens}
Length = 452
Score = 41.3 bits (97), Expect = 8e-04
Identities = 47/334 (14%), Positives = 85/334 (25%), Gaps = 94/334 (28%)
Query: 65 QLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCK 124
+L N GD A Q ++Q LA +LG +++ L + + K
Sbjct: 8 RLANEALKRGDTVTAQQNYQQ---LA-----ELGYSEAQVGLADIQVGTRDPAQI----K 55
Query: 125 RHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYE 184
+ R D A LG + AK G + + EA +
Sbjct: 56 QAEATYRAAADTSPR--AQARLGRLLAAKP---GAT-EAEH-----------HEAESLLK 98
Query: 185 Q-----------NLALM--------------KEINDTAAQG--RACGNLGNTYYLLG--- 214
+ LA++ ++I+ A G A Y G
Sbjct: 99 KAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYD 158
Query: 215 NFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGE----YQAASEHYKRTLVLA 270
+ + A L + + + +
Sbjct: 159 QHLDDVER----ICKAALNTTDICY----VELATVY-QKKQQPEQQAELLKQMEA----G 205
Query: 271 QDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG--RACWSLGN 328
G A L D AQ L++++ G + SL
Sbjct: 206 VSRGT----VTAQRVDSVARVLGDATLGTPDEKT-----AQALLEKIAPGYPASWVSLAQ 256
Query: 329 AHAARG---NHEKALYFATKHLEISKQLGDPLGQ 359
+ E+ + K+L+ + P +
Sbjct: 257 LLYDFPELGDVEQMM----KYLDNGRAADQPRAE 286
Score = 34.7 bits (80), Expect = 0.085
Identities = 38/265 (14%), Positives = 67/265 (25%), Gaps = 84/265 (31%)
Query: 44 FFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103
+ R S LG+A D + A ++ G S
Sbjct: 202 MEAGVSRGTVTAQRVDSVAR-VLGDATLGTPDEKTAQALLEK----IAP-----GYPASW 251
Query: 104 GNLGNTLKVMGK---YDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKV 160
+L L + ++ M ++L+ R + RA LG +Y+ GK
Sbjct: 252 VSLAQLLYDFPELGDVEQMM----KYLDNGRAADQ----PRAELLLGKLYYE-----GKW 298
Query: 161 GQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQG--RACGNLGNTYYLLG---- 214
D + A ++E+ A A LG Y G
Sbjct: 299 VPADA-----------KAAEAHFEK-----------AVGREVAADYYLGQ-IYRRGYLGK 335
Query: 215 -NFKQAIYYHQERLKIAREFGDKAAER---RANSNLGNSHIFLGE-----YQAASEHYKR 265
++A+ + AA A+ + G+ A +
Sbjct: 336 VYPQKALDHLL-----------TAARNGQNSADFAIAQLF-SQGKGTKPDPLNAYVFSQL 383
Query: 266 TLVLAQDLGDRAVEAQACYSLGNTY 290
A+ +A
Sbjct: 384 ----AKAQDT----PEANDLATQLE 400
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 40.8 bits (95), Expect = 8e-04
Identities = 32/147 (21%), Positives = 53/147 (36%), Gaps = 30/147 (20%)
Query: 67 GNAYFYLGDYQKAM-QYHK--------QDLTLARNMEDKLGEAKSS--GNLGNTLKVMGK 115
GN+ F ++AM QY L +D K+ N+ L + +
Sbjct: 186 GNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR 245
Query: 116 YDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVC 175
YDEA+ C L + N K AL+ G G+ + +
Sbjct: 246 YDEAIGHCNIVLTEEEK-NPK-----ALFRRGKAKAELGQ-------------MDSARDD 286
Query: 176 LQEAIKYYEQNLALMKEINDTAAQGRA 202
++A KY + A+ +E+ A Q +A
Sbjct: 287 FRKAQKYAPDDKAIRRELRALAEQEKA 313
Score = 33.1 bits (75), Expect = 0.22
Identities = 24/162 (14%), Positives = 46/162 (28%), Gaps = 21/162 (12%)
Query: 156 AIGKVGQQDPGEYPE----EVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYY 211
A GK G P +V + + E + + GN+ +
Sbjct: 131 AYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLF 190
Query: 212 LLGNFKQAIYYHQERLKIAREFGD-----------KAAERRANSNLGNSHIFLGEYQAAS 260
++A+ ++ + + A + + N+ I L Y A
Sbjct: 191 KEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAI 250
Query: 261 EHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
H VL ++ +A + G L +A D
Sbjct: 251 GHCNI--VLTEE----EKNPKALFRRGKAKAELGQMDSARDD 286
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 38.1 bits (89), Expect = 0.001
Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 19/120 (15%)
Query: 67 GNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRH 126
GN+ F G Y++A+ + Q +T N L +G+Y +A+ C++
Sbjct: 11 GNSLFKQGLYREAVHCYDQLITAQPQ------NPVGYSNKAMALIKLGEYTQAIQMCQQG 64
Query: 127 LEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQN 186
L + + Y L A G + V + E + Y+++
Sbjct: 65 LRYTSTAEHVAIRSKLQYRLELAQGAVGSV-------------QIPVVEVDELPEGYDRS 111
Score = 31.9 bits (73), Expect = 0.15
Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYK 264
GN+ + G +++A++ + + + + SN + I LGEY A + +
Sbjct: 9 EQGNSLFKQGLYREAVHCYDQLITAQPQ------NPVGYSNKAMALIKLGEYTQAIQMCQ 62
Query: 265 RTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 300
+ L A+ ++ Y L + +
Sbjct: 63 QGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPV 98
Score = 30.0 bits (68), Expect = 0.66
Identities = 24/105 (22%), Positives = 35/105 (33%), Gaps = 4/105 (3%)
Query: 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYH 83
+ +G L K G R V + I A + YS A LG+Y +A+Q
Sbjct: 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQN----PVGYSNKAMALIKLGEYTQAIQMC 61
Query: 84 KQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLE 128
+Q L E +K L +G +V E
Sbjct: 62 QQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPE 106
Score = 28.4 bits (64), Expect = 2.2
Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 30/116 (25%)
Query: 245 NLGNSHIFLGEYQAASEHYKRTLVLAQD----LGDRAVEAQACYS-LGNTYTLLRDYPTA 299
GNS G Y+ A Y + + ++A LG ++
Sbjct: 9 EQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKA----MALIKLGEYTQAIQMCQQG 64
Query: 300 IDY-------HLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLE 348
+ Y +R + + L A A G+ + + + E
Sbjct: 65 LRYTSTAEHVAIR--------------SKLQYRLELAQGAVGSVQIPVVEVDELPE 106
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 38.4 bits (90), Expect = 0.001
Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 10/116 (8%)
Query: 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYH 83
EL +G RL A + AI + Y+ Y + ++A+
Sbjct: 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALA-- 64
Query: 84 KQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139
D A ++ + K+ LG M YDEA+ +R ++++ +
Sbjct: 65 --DCRRALELDGQS--VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 116
Score = 31.1 bits (71), Expect = 0.39
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEA 100
+ LG + Y +A+ ++ +LA+ G+
Sbjct: 80 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD 117
Score = 31.1 bits (71), Expect = 0.44
Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 12/104 (11%)
Query: 177 QEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDK 236
EA Y + A+ N A N Y + +QA+ + L++ + K
Sbjct: 26 PEAAACYGR--AI--TRNPLVAVYYT--NRALCYLKMQQPEQALADCRRALELDGQSV-K 78
Query: 237 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA 280
A G + + Y A + +R LA++ +
Sbjct: 79 AHFFL-----GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD 117
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 39.7 bits (92), Expect = 0.002
Identities = 25/280 (8%), Positives = 52/280 (18%), Gaps = 34/280 (12%)
Query: 70 YFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEI 129
FY+G YQ+ + ++ + + + L KY +
Sbjct: 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLA-----QRKYGVV---------L 54
Query: 130 SRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDP----GEYPEEVKVCLQEAIKYYEQ 185
E +A+ + + V + D L A Y+
Sbjct: 55 DEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD 114
Query: 186 NLALM-KEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANS 244
L A ++ +
Sbjct: 115 QNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA------TLTQL 168
Query: 245 NLGNSHIFLG--EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
+ G + Q A ++ + + A
Sbjct: 169 ATAWVSLAAGGEKLQDAYYIFQEMADKCSP------TLLLLNGQAACHMAQGRWEAAEGV 222
Query: 303 HLRHLIIAQQLMD-RVGEGRACWSLGNAHAARGNHEKALY 341
L + + LG + L
Sbjct: 223 LQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262
Score = 36.6 bits (84), Expect = 0.015
Identities = 36/257 (14%), Positives = 63/257 (24%), Gaps = 57/257 (22%)
Query: 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHK 84
+ + E L A VA + D T + + YFY + A++
Sbjct: 68 VRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLM--AASIYFYDQNPDAALRTLH 125
Query: 85 QDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALY 144
Q +L L + + D A K+ +
Sbjct: 126 QGDSLECMA-----------MTVQILLKLDRLDLARKELKKMQDQDE------DATLTQL 168
Query: 145 NLGNVYHAKG-----------KAIGKVGQQDPGEYPEEVKVCLQ-----EAIKYYEQNLA 188
V A G + + + + A ++ L
Sbjct: 169 ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228
Query: 189 LMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGN 248
+T NL LG + + +LK +
Sbjct: 229 KDSGHPETLI------NLVVLSQHLGKPPEVTNRYLSQLK----------------DAHR 266
Query: 249 SHIFLGEYQAASEHYKR 265
SH F+ EY+A + R
Sbjct: 267 SHPFIKEYRAKENDFDR 283
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 37.2 bits (87), Expect = 0.003
Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 10/106 (9%)
Query: 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYH 83
E +G K GD + + A++ ++ + +YS L ++Q+A+
Sbjct: 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN----AILYSNRAACLTKLMEFQRAL--- 67
Query: 84 KQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEI 129
D ++ K K L M ++ +A + L++
Sbjct: 68 -DDCDTCIRLDSKF--IKGYIRKAACLVAMREWSKAQRAYEDALQV 110
Score = 30.3 bits (69), Expect = 0.67
Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 20/123 (16%)
Query: 65 QLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCK 124
GN YF GDY AM+++ + + A N L + ++ A+ C
Sbjct: 18 NKGNEYFKKGDYPTAMRHYNEAVKRDPE------NAILYSNRAACLTKLMEFQRALDDCD 71
Query: 125 RHLEISRQLNDKLSEGRALYNLGNVYHAKGK------AIGKVGQQDPGEYPEEVKVCLQE 178
+ L+ K + A + A Q DP EE + ++
Sbjct: 72 TCIR----LDSKFI--KGYIRKAACLVAMREWSKAQRAYEDALQVDPSN--EEAREGVRN 123
Query: 179 AIK 181
++
Sbjct: 124 CLR 126
Score = 28.3 bits (64), Expect = 3.6
Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 12/93 (12%)
Query: 177 QEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDK 236
A+++Y + A+ + + A N L F++A+ +++ +F K
Sbjct: 30 PTAMRHYNE--AV--KRDPENA--ILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI-K 82
Query: 237 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 269
R+ + + E+ A Y+ L +
Sbjct: 83 GYIRK-----AACLVAMREWSKAQRAYEDALQV 110
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 38.7 bits (90), Expect = 0.003
Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 14/172 (8%)
Query: 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYH 83
EL +G RL A + AI + Y+ Y + ++A
Sbjct: 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQA---- 57
Query: 84 KQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRAL 143
D A ++ + K+ LG M YDEA+ +R ++++ +
Sbjct: 58 LADCRRALELDGQS--VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS 115
Query: 144 YNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIND 195
+ AK K + ++ + E + E+ L + ++
Sbjct: 116 ----ALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHE 163
>2om2_B Regulator of G-protein signalling 14 goloco motif peptide; arginine
finger, RGS14 goloco, signaling protein; HET: GDP; 2.20A
{Homo sapiens} PDB: 1kjy_B* 3onw_C* 3qi2_C*
Length = 36
Score = 33.4 bits (76), Expect = 0.009
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 442 EEESFFELLSRFQSERMDDQRCSLSARQSENKENLQ 477
+ E ELL+R QS DQR L E LQ
Sbjct: 1 DIEGLVELLNRVQSSGAHDQRGLLRKEDLVLPEFLQ 36
Score = 30.7 bits (69), Expect = 0.084
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 537 DGFLDMLIRCQGARLEDQRSHLPQEGSTVPD 567
+G +++L R Q + DQR L +E +P+
Sbjct: 3 EGLVELLNRVQSSGAHDQRGLLRKEDLVLPE 33
Score = 27.7 bits (61), Expect = 1.1
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 568 EDFFSLITRLQSGRMEDQR 586
E L+ R+QS DQR
Sbjct: 3 EGLVELLNRVQSSGAHDQR 21
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 36.7 bits (85), Expect = 0.010
Identities = 28/138 (20%), Positives = 44/138 (31%), Gaps = 29/138 (21%)
Query: 67 GNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG----------NLGNTLKVMGKY 116
GN +F + +A+ +K+ L + E+ + NL Y
Sbjct: 45 GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDY 104
Query: 117 DEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCL 176
+A+ + L+I + N K ALY LG G EE K L
Sbjct: 105 PKAIDHASKVLKIDKN-NVK-----ALYKLGVANMYFGF-------------LEEAKENL 145
Query: 177 QEAIKYYEQNLALMKEIN 194
+A NL +
Sbjct: 146 YKAASLNPNNLDIRNSYE 163
Score = 29.0 bits (65), Expect = 3.2
Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 16/108 (14%)
Query: 205 NLGNTYYLLGNFKQAI--------YYHQERLKIAREFGDKAAERRA--NSNLGNSHIFLG 254
GN ++ +AI ++ + DK N NL +
Sbjct: 43 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK 102
Query: 255 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
+Y A +H + VL D + +A Y LG A +
Sbjct: 103 DYPKAIDHA--SKVLKIDKNN----VKALYKLGVANMYFGFLEEAKEN 144
>3tvt_B PINS, partner of inscuteable; DLG, SRC-homology-3, guanylate
kinase, phosphorylation-depen cell membrane; 1.60A
{Drosophila melanogaster}
Length = 50
Score = 33.4 bits (75), Expect = 0.014
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 403 RYNRVRRSSMEQLDLIKLTPENKGKQS 429
R RVRR MEQLDLIK+TP+ K Q
Sbjct: 18 RMVRVRRQDMEQLDLIKITPDGKRMQE 44
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 35.8 bits (83), Expect = 0.015
Identities = 20/138 (14%), Positives = 43/138 (31%), Gaps = 31/138 (22%)
Query: 67 GNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKV------------MG 114
GN F DY++A+ ++ LT + + + + + +G
Sbjct: 18 GNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG 77
Query: 115 KYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKV 174
EA L+ N+K AL+ A K +E +
Sbjct: 78 DLHEAEETSSEVLKREET-NEK-----ALFRRAKARIAAWK-------------LDEAEE 118
Query: 175 CLQEAIKYYEQNLALMKE 192
L+ ++ + +++
Sbjct: 119 DLKLLLRNHPAAASVVAR 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 34.9 bits (81), Expect = 0.019
Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 10/113 (8%)
Query: 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYH 83
E LEG+ D V + I+ +D + YS A L + +A+
Sbjct: 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIA-- 59
Query: 84 KQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDK 136
D A + ++ + +Y A+ ++N+
Sbjct: 60 --DCNKAIEKDPNF--VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 108
Score = 29.6 bits (67), Expect = 1.1
Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 12/99 (12%)
Query: 177 QEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDK 236
A+K Y + + + A R N L +F +AI + ++ F +
Sbjct: 21 PNAVKAYTE--MI--KRAPEDA--RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV-R 73
Query: 237 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD 275
A R+ + I + EY +A E ++ +
Sbjct: 74 AYIRK-----ATAQIAVKEYASALETLDAARTKDAEVNN 107
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.022
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 473 KENLQRITNT-KKSQP-SAPRATTIPA 497
K+ L+++ + K SAP A I A
Sbjct: 19 KQALKKLQASLKLYADDSAP-ALAIKA 44
Score = 28.8 bits (63), Expect = 3.0
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 9/31 (29%)
Query: 170 EEVKVCLQEAIKYYEQN----LALMKEINDT 196
+ +K LQ ++K Y + LA I T
Sbjct: 20 QALKK-LQASLKLYADDSAPALA----IKAT 45
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 34.3 bits (79), Expect = 0.054
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 10/106 (9%)
Query: 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYH 83
EL + KA D + F+ AI+ + + Y AY Y A+
Sbjct: 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYAL--- 67
Query: 84 KQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEI 129
D T A ++ K K + +GK+ A+ + +++
Sbjct: 68 -GDATRAIELDKK--YIKGYYRRAASNMALGKFRAALRDYETVVKV 110
Score = 30.4 bits (69), Expect = 0.88
Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 20/125 (16%)
Query: 67 GNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRH 126
N YF DY+ A++++ Q + L + A GN Y A+ R
Sbjct: 20 ANDYFKAKDYENAIKFYSQAIELNPS------NAIYYGNRSLAYLRTECYGYALGDATRA 73
Query: 127 LEISRQLNDKLSEGRALYNLGNVYHAKGK------AIGKVGQQDPGEYPEEVKVCLQEAI 180
+E L+ K + Y A GK V + P + ++ K+ QE
Sbjct: 74 IE----LDKKYI--KGYYRRAASNMALGKFRAALRDYETVVKVKPHD--KDAKMKYQECN 125
Query: 181 KYYEQ 185
K +Q
Sbjct: 126 KIVKQ 130
Score = 29.3 bits (66), Expect = 2.5
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 177 QEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDK 236
+ AIK+Y Q A+ E+N + A GN Y + A+ +++ +++ K
Sbjct: 30 ENAIKFYSQ--AI--ELNPSNA--IYYGNRSLAYLRTECYGYALGDATRAIELDKKYI-K 82
Query: 237 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 269
RRA SN+ LG+++AA Y+ + +
Sbjct: 83 GYYRRAASNMA-----LGKFRAALRDYETVVKV 110
Score = 27.7 bits (62), Expect = 8.2
Identities = 6/42 (14%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARN---MEDKLGEAK 101
Y + + LG ++ A++ ++ + + + + K E
Sbjct: 84 YYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 125
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 33.5 bits (77), Expect = 0.062
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 206 LGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR 265
LG +YY NF+ A ++ + DKAA LG S G+ A + ++
Sbjct: 45 LGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAG--GLLKLGLSQYGEGKNTEAQQTLQQ 101
Score = 27.0 bits (60), Expect = 8.5
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 34 KAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM 93
K G F + ++ + + T +A+Y LG +Y+ ++Q A + ++
Sbjct: 14 KNGKYDDASQLFLSFLELYPNGVYTPNALYW-LGESYYATRNFQLAEAQFRDLVSRYPT- 71
Query: 94 EDKLGEAKSSGNLGNTLKVMGKYDEA 119
DK LG + GK EA
Sbjct: 72 HDKAAGGLL--KLGLSQYGEGKNTEA 95
>2xns_C RGS14, regulator of G-protein signaling 14; hydrolase-peptide
complex, ADP-ribosylation, arginine finger binding,
lipoprotein, nucleotide-binding; HET: GDP SRT; 3.41A
{Homo sapiens}
Length = 40
Score = 31.2 bits (70), Expect = 0.067
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 442 EEESFFELLSRFQSERMDDQRCSLSARQSENKENLQRI 479
+ E ELL+R QS DQR LS E + R
Sbjct: 1 DIEGLVELLNRVQSSGAHDQRGLLS------NEEVFRA 32
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 34.7 bits (80), Expect = 0.077
Identities = 23/143 (16%), Positives = 48/143 (33%), Gaps = 31/143 (21%)
Query: 65 QLGNAYFYLGD-------YQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNT----LKVM 113
+GN +F + Y K ++Y + A + + + + + N LK M
Sbjct: 228 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-M 286
Query: 114 GKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVK 173
+ A+ C LEI +ALY + + ++
Sbjct: 287 SDWQGAVDSCLEALEID---PSN---TKALYRRAQGWQGLKE-------------YDQAL 327
Query: 174 VCLQEAIKYYEQNLALMKEINDT 196
L++A + ++ A+ E+
Sbjct: 328 ADLKKAQEIAPEDKAIQAELLKV 350
Score = 28.9 bits (65), Expect = 4.6
Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 16/107 (14%)
Query: 205 NLGNTYYLLGNFKQAI--------YYHQERLKIAREFGDKAAERRA--NSNLGNSHIFLG 254
N+GNT++ N++ AI Y R G K N+G + +
Sbjct: 228 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS 287
Query: 255 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 301
++Q A + L D +A Y + L++Y A+
Sbjct: 288 DWQGAVDS--CLEALEID----PSNTKALYRRAQGWQGLKEYDQALA 328
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide
repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo
sapiens} SCOP: a.118.8.1
Length = 497
Score = 34.6 bits (78), Expect = 0.11
Identities = 35/312 (11%), Positives = 78/312 (25%), Gaps = 19/312 (6%)
Query: 170 EEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKI 229
+ +A YY L+ + G+ L G+ I+Y+ + +
Sbjct: 162 ARYRNQTSQAESYYRHAAQLV------PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215
Query: 230 AREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNT 289
F A++NL + E + + D ++ L +
Sbjct: 216 KFPFPA------ASTNLQKALSKALESRDEVKTKWGV----SDFIKAFIKFHGHVYLSKS 265
Query: 290 YTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
L ++ + L+ + + +L H R + E
Sbjct: 266 LEKLSPLREKLEEQFKELLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHTYSQDEQ 325
Query: 350 SKQLGDPLGQVTAQMNVTDLRKALGMSTNDLSPDSLQLINSYAN--ANQPSPGVRRYNRV 407
++ + + L + + +P
Sbjct: 326 LCWTQLLALFMSFLGILCKCPLQNESQEESYNAYPLPAVKVSMDWLRLRPRVFQEAVVDE 385
Query: 408 RRSSMEQLDLIKLTPENKGKQSGSSNSSELSKCDEEESFFELLSRFQSERMDDQRCSLSA 467
R+ L + L + ++ SS S+ + E F L +
Sbjct: 386 RQYIWPWLISL-LNSFHPHEEDLSSISATPLPEEFELQGFLALRPSFRNLDFSKGHQGIT 444
Query: 468 RQSENKENLQRI 479
E ++ R
Sbjct: 445 GDKEGQQRRIRQ 456
Score = 29.2 bits (64), Expect = 4.4
Identities = 21/164 (12%), Positives = 43/164 (26%), Gaps = 13/164 (7%)
Query: 148 NVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLG 207
N + E + + L+ A +Y Q L + + + R
Sbjct: 67 NQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR--VKSS 124
Query: 208 NTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTL 267
+ + + +LG+ + + A +Y+
Sbjct: 125 QLGIISNKQTHTSAIVKPQSSSCSYICQHCLV-----HLGDIARYRNQTSQAESYYRHAA 179
Query: 268 VLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 311
L G Q L + D+ T I Y+ R + +
Sbjct: 180 QLVPSNG------QPYNQLAILASSKGDHLTTIFYYCRSIAVKF 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 31.4 bits (70), Expect = 0.85
Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 12/120 (10%)
Query: 21 MCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSA----IYSQLGNAYFYLGDY 76
E + E L +A QA I + ++ L ++ + +A LG
Sbjct: 286 EVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLL 345
Query: 77 QKAMQYHKQDLTLARNMEDKLGE-----AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131
++A+ Y + + +G G + +AM + +I R
Sbjct: 346 EEALFYGTRTM---EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR 402
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 29.6 bits (67), Expect = 1.7
Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 31/133 (23%)
Query: 67 GNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRH 126
GN F GDY A+ + Q L L +D+ A N + YD+A +
Sbjct: 35 GNELFKCGDYGGALAAYTQALGLDATPQDQ---AVLHRNRAACHLKLEDYDKAETEASKA 91
Query: 127 LEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQN 186
+E + K ALY G+ L +A+ ++
Sbjct: 92 IEKDGG-DVK-----ALYRRSQALEKLGR--------------------LDQAVLDLQR- 124
Query: 187 LALMKEINDTAAQ 199
+ E + Q
Sbjct: 125 -CVSLEPKNKVFQ 136
Score = 28.9 bits (65), Expect = 2.9
Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 21/132 (15%)
Query: 245 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGN---TYTLLRDYPTAID 301
GN G+Y A Y + L L D+AV + N + L DY A
Sbjct: 33 KEGNELFKCGDYGGALAAYTQALGLDATPQDQAV----LHR--NRAACHLKLEDYDKAET 86
Query: 302 YHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVT 361
+ + + +A + A G ++A+ + + + +P
Sbjct: 87 EASKAIEKDGGDV------KALYRRSQALEKLGRLDQAVLDLQRCVSL-----EP-KNKV 134
Query: 362 AQMNVTDLRKAL 373
Q + ++
Sbjct: 135 FQEALRNISGPS 146
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr
protein phosphatase, ppase, manganese, sulfate, viral
protein; 2.15A {Enterobacteria phage lambda} SCOP:
d.159.1.3
Length = 221
Score = 29.4 bits (66), Expect = 2.9
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 290 YTLLRDYPTAIDYH--LRHLIIAQQLMDRVGEGRACWSL---GNAHAARGNHEKALY 341
YT L + I + LI L+DR E C L A RGNHE+ +
Sbjct: 25 YTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITFPWFRAVRGNHEQMMI 81
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR,
tetratricopeptide repeat like, TPR-like, transport
protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Length = 158
Score = 29.0 bits (64), Expect = 3.2
Identities = 14/130 (10%), Positives = 43/130 (33%), Gaps = 16/130 (12%)
Query: 75 DYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC------CKRHLE 128
++ + + + + + +A + G L + ++ E
Sbjct: 11 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFE 70
Query: 129 ISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK------Y 182
+ ++ K E A++ +GN Y + + + + Q+A+ +
Sbjct: 71 EALLIDPKKDE--AVWCIGNAYTSFAFLTPD--ETEAKHNFDLATQFFQQAVDEQPDNTH 126
Query: 183 YEQNLALMKE 192
Y ++L + +
Sbjct: 127 YLKSLEMTAK 136
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 29.4 bits (64), Expect = 3.6
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 81 QYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139
Y +Q AR + + G + E + + HLE+ L + E
Sbjct: 54 AYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERV--SELHLEVKASLMNDDFE 110
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper
transport, copper, transport, polymorphism,
glycoprotein, multi-copper oxidase; HET: NAG; 2.80A
{Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3
b.6.1.3 PDB: 1kcw_A*
Length = 1065
Score = 29.2 bits (64), Expect = 5.1
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 5/73 (6%)
Query: 336 HEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLSPDSLQLINSYANAN 395
E + F+ S L D + ++ D +N + +N Y +
Sbjct: 215 REFVVMFSVVDENFSWYLEDNIKTYCSEPEKVDKDNEDFQQSNRM-----YSVNGYTFGS 269
Query: 396 QPSPGVRRYNRVR 408
+ +RV+
Sbjct: 270 LSGLSMCAEDRVK 282
>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta
barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB:
2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A*
3fdk_A* 3htw_A*
Length = 339
Score = 28.5 bits (63), Expect = 6.2
Identities = 18/92 (19%), Positives = 26/92 (28%), Gaps = 5/92 (5%)
Query: 494 TIPAHTPGDDDLLDMIVGLQSKRMDEQRAALPHLADRENAIPDDGFLDMLIRCQGARLED 553
I HT L S D R + H+ + L G +
Sbjct: 188 PIITHTQEGQQGPQQAELLTSLGADPARIMIGHMDGNTDPAYHRETLRH-----GVSIAF 242
Query: 554 QRSHLPQEGSTVPDEDFFSLITRLQSGRMEDQ 585
R L T D + S++T L D+
Sbjct: 243 DRIGLQGMVGTPTDAERLSVLTTLLGEGYADR 274
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Length = 478
Score = 28.6 bits (64), Expect = 6.7
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 58 TLSAIYSQLGNAYFYLGDYQKAMQY 82
+ YS L + + G+Y +A Y
Sbjct: 195 NKLSAYSVLAHICAWQGNYAEAETY 219
>3l22_A SUSD superfamily protein; structural genomics, joint center
structural genomics, JCSG, protein structure initiative;
HET: MSE; 2.05A {Bacteroides fragilis}
Length = 441
Score = 27.9 bits (62), Expect = 10.0
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 58 TLSAIYSQLGNAYFYLGDYQKAMQY 82
T +A Y + ++ KA+
Sbjct: 199 TQAAANMLKMRVYMAMNEWDKAITA 223
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.379
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,035,765
Number of extensions: 553506
Number of successful extensions: 3559
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1599
Number of HSP's successfully gapped: 406
Length of query: 609
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 510
Effective length of database: 3,937,614
Effective search space: 2008183140
Effective search space used: 2008183140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)