BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10739
(187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 92.8 bits (229), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 73/112 (65%), Gaps = 11/112 (9%)
Query: 75 FKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNI-----DQLDEIEEENVTVIEPTC 129
FKN GK EMRR+R E+NVELRKA KD+Q+ KRRN+ D ++E
Sbjct: 17 FKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENR------NN 70
Query: 130 MSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
+ +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct: 71 QGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 122
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
SLL++ + NI KEA WT+SNITAG QI V+ GL+P++V +L D K QK AA
Sbjct: 342 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAA 398
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
E+AW ++NI +G S Q V+ G +P +++L + A + ++A
Sbjct: 139 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 182
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLLPYIVNILENGDAKV 52
+LS + K AAW I+N T+G + QI +++ G++ ++N+L D K+
Sbjct: 384 GVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 436
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNIL 45
SLL+S +I ++A W + NI S D VI+ G + ++ +L
Sbjct: 169 SLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALL 213
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 6/117 (5%)
Query: 71 RKASFKNAGK-SFDEMRRKRCEMNVELRKAHKDDQLFKRRNI----DQLDEIEEENVTV- 124
R+ +FKN G+ S DE+RR+R VELRKA +D+ L KRRN D D EE+ +V
Sbjct: 17 RRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVS 76
Query: 125 IEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
+ S ++ +P+M + + S + + ++ AT R++LS+E PPID +I+AGVVP
Sbjct: 77 ADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 133
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 39/55 (70%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
LLSS + NI KEA WTISNITAGN+ QI VI L+P +V +LE + K +KEA
Sbjct: 349 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 403
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
EAAW ++NI +G S Q V+ +P + +L G +V+++A
Sbjct: 150 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQA 193
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
L +S++ ++++ A WT+SN+ G Q D + LP + ++ + D + +A
Sbjct: 222 GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDA 277
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQID---HVIQEGLLPYIVNILENGDAKV 52
LL + KEA W ISN ++G ++ D +++ +G + + ++LE D ++
Sbjct: 391 LLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 444
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
LLS + A + NI GN Q VI G+LP + +L + ++KEA
Sbjct: 307 LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA 361
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
SLL++ + NI KEA WT+SNITAG QI V+ GL+P++V +L D K QKEAA
Sbjct: 323 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 379
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 39/49 (79%)
Query: 133 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
+ +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct: 55 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 103
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
E+AW ++NI +G S Q V+ G +P +++L + A + ++A
Sbjct: 120 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 163
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLLPYIVNILENGDAKV 52
+LS + KEAAW I+N T+G + QI +++ G++ ++N+L D K+
Sbjct: 365 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 417
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNIL 45
SLL+S +I ++A W + NI S D VI+ G + ++ +L
Sbjct: 150 SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 194
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
SLL++ + NI KEA WT+SNITAG QI V+ GL+P++V +L D K QKEAA
Sbjct: 309 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 365
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 39/49 (79%)
Query: 133 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
+ +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct: 41 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 89
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLLPYIVNILENGDAKV 52
+LS + KEAAW I+N T+G + QI +++ G++ ++N+L D K+
Sbjct: 351 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 403
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
E+AW ++NI +G S Q V+ G +P +++L + A + ++A
Sbjct: 106 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 149
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNIL 45
SLL+S +I ++A W + NI S D VI+ G + ++ +L
Sbjct: 136 SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 180
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
SLL++ + NI KEA WT+SNITAG QI V+ GL+P++V +L D K QKEAA
Sbjct: 323 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 379
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
Query: 105 LFKRRNIDQLD-EIEEENVTVIE-PTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKM 162
LF+R ++D D +++++ + + + + +V ++++G+ S+N + ++ AT++ARK+
Sbjct: 25 LFERNHMDSPDLGTDDDDLAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKL 84
Query: 163 LSKERHPPIDELIEAGVVP 181
LS+E+ PPID +I AG++P
Sbjct: 85 LSREKQPPIDNIIRAGLIP 103
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
E+AW ++NI +G S Q V+ G +P +++L + A + ++A
Sbjct: 120 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 163
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLLPYIVNILENGDAKV 52
+LS + KEAAW I+N T+G + QI +++ G++ ++N+L D K+
Sbjct: 365 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 417
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNIL 45
SLL+S +I ++A W + NI S D VI+ G + ++ +L
Sbjct: 150 SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 194
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
SLL++ + NI KEA WT+SNITAG QI V+ GL+P++V +L D K QKEAA
Sbjct: 323 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 379
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
Query: 105 LFKRRNIDQLD-EIEEENVTVIE-PTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKM 162
LF+R ++D D +++++ + + + + +V ++++G+ S+N + ++ AT++ARK+
Sbjct: 25 LFERNHMDSPDLGTDDDDLAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKL 84
Query: 163 LSKERHPPIDELIEAGVVP 181
LS+E+ PPID +I AG++P
Sbjct: 85 LSREKQPPIDNIIRAGLIP 103
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
E+AW ++NI +G S Q V+ G +P +++L + A + ++A
Sbjct: 120 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 163
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLLPYIVNILENGDAKV 52
+LS + KEAAW I+N T+G + QI +++ G++ ++N+L D K+
Sbjct: 365 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 417
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNIL 45
SLL+S +I ++A W + NI S D VI+ G + ++ +L
Sbjct: 150 SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 194
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
SLL++ + NI KEA WT+SNITAG QI V+ GL+P++V +L D K QKEAA
Sbjct: 299 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 355
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 52/85 (61%), Gaps = 11/85 (12%)
Query: 102 DDQLFKRRNI-----DQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIAT 156
D+Q+ KRRN+ D ++E + +V ++++G+ S+N + ++ AT
Sbjct: 1 DEQMLKRRNVSSFPDDATSPLQENR------NNQGTVNWSVEDIVKGINSNNLESQLQAT 54
Query: 157 RSARKMLSKERHPPIDELIEAGVVP 181
++ARK+LS+E+ PPID +I AG++P
Sbjct: 55 QAARKLLSREKQPPIDNIIRAGLIP 79
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
E+AW ++NI +G S Q V+ G +P +++L + A + ++A
Sbjct: 96 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 139
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLLPYIVNILENGDAKV 52
+LS + KEAAW I+N T+G + QI +++ G++ ++N+L D K+
Sbjct: 341 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 393
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNIL 45
SLL+S +I ++A W + NI S D VI+ G + ++ +L
Sbjct: 126 SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 170
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
SLL++ + NI KEA WT+SNITAG QI V+ GL+P++V +L D K QKEAA
Sbjct: 307 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 363
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 51/76 (67%)
Query: 106 FKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSK 165
F+R+++D D +++ + + +V ++++G+ S+N + ++ AT++ARK+LS+
Sbjct: 12 FERQHMDSPDLGTDDDDKAMADIGSGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSR 71
Query: 166 ERHPPIDELIEAGVVP 181
E+ PPID +I AG++P
Sbjct: 72 EKQPPIDNIIRAGLIP 87
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
E+AW ++NI +G S Q V+ G +P +++L + A + ++A
Sbjct: 104 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 147
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLLPYIVNILENGDAKV 52
+LS + KEAAW I+N T+G + QI +++ G++ ++N+L D K+
Sbjct: 349 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 401
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNIL 45
SLL+S +I ++A W + NI S D VI+ G + ++ +L
Sbjct: 134 SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 178
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
SLL++ + NI KEA WT+SNITAG QI V+ GL+P++V +L D K QKEAA
Sbjct: 279 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 335
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 39/49 (79%)
Query: 133 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
+ +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct: 11 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 59
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
E+AW ++NI +G S Q V+ G +P +++L + A + ++A
Sbjct: 76 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 119
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLLPYIVNILENGDAKV 52
+LS + KEAAW I+N T+G + QI +++ G++ ++N+L D K+
Sbjct: 321 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 373
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNIL 45
SLL+S +I ++A W + NI S D VI+ G + ++ +L
Sbjct: 106 SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 150
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
SLL++ + NI KEA WT+SNITAG QI V+ GL+P++V +L D K QKEAA
Sbjct: 273 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 329
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 39/49 (79%)
Query: 133 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
+ +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct: 5 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 53
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
E+AW ++NI +G S Q V+ G +P +++L + A + ++A
Sbjct: 70 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 113
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLLPYIVNILENGDAKV 52
+LS + KEAAW I+N T+G + QI +++ G++ ++N+L D K+
Sbjct: 315 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 367
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNIL 45
SLL+S +I ++A W + NI S D VI+ G + ++ +L
Sbjct: 100 SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 144
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
SLL++ + NI KEA WT+SNITAG QI V+ GL+P++V +L D K QKEAA
Sbjct: 273 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 329
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 39/49 (79%)
Query: 133 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
+ +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct: 5 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 53
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
E+AW ++NI +G S Q V+ G +P +++L + A + ++A
Sbjct: 70 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 113
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLLPYIVNILENGDAKV 52
+LS + KEAAW I+N T+G + QI +++ G++ ++N+L D K+
Sbjct: 315 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 367
Score = 29.6 bits (65), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNIL 45
SLL+S +I ++A W + NI S D VI+ G + ++ +L
Sbjct: 100 SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 144
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
SLL++ + NI KEA WT+SNITAG QI V+ GL+P++V +L D K QKEAA
Sbjct: 273 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 329
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 39/49 (79%)
Query: 133 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
+ +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct: 5 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 53
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
E+AW ++NI +G S Q V+ G +P +++L + A + ++A
Sbjct: 70 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 113
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLLPYIVNILENGDAKV 52
+LS + KEAAW I+N T+G + QI +++ G++ ++N+L D K+
Sbjct: 315 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 367
Score = 29.6 bits (65), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNIL 45
SLL+S +I ++A W + NI S D VI+ G + ++ +L
Sbjct: 100 SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 144
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
SLL++ + NI KEA WT+SNITAG QI V+ GL+P++V +L D K QKEAA
Sbjct: 272 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 328
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 39/49 (79%)
Query: 133 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
+ +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct: 4 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 52
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
E+AW ++NI +G S Q V+ G +P +++L + A + ++A
Sbjct: 69 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 112
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLLPYIVNILENGDAKV 52
+LS + KEAAW I+N T+G + QI +++ G++ ++N+L D K+
Sbjct: 314 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 366
Score = 29.6 bits (65), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNIL 45
SLL+S +I ++A W + NI S D VI+ G + ++ +L
Sbjct: 99 SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 143
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
SLL++ + NI KEA WT+SNITAG QI V+ GL+P++V +L D K QKEAA
Sbjct: 268 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 324
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 38/47 (80%)
Query: 135 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
+V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct: 2 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 48
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
E+AW ++NI +G S Q V+ G +P +++L + A + ++A
Sbjct: 65 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 108
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLLPYIVNILENGDAKV 52
+LS + KEAAW I+N T+G + QI +++ G++ ++N+L D K+
Sbjct: 310 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 362
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNIL 45
SLL+S +I ++A W + NI S D VI+ G + ++ +L
Sbjct: 95 SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 139
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
SLL++ + NI KEA WT+SNITAG QI V+ GL+P++V +L D K QKEAA
Sbjct: 272 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 328
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 39/49 (79%)
Query: 133 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
+ +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct: 4 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 52
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
E+AW ++NI +G S Q V+ G +P +++L + A + ++A
Sbjct: 69 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 112
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLLPYIVNILENGDAKV 52
+LS + KEAAW I+N T+G + QI +++ G++ ++N+L D K+
Sbjct: 314 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 366
Score = 29.6 bits (65), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNIL 45
SLL+S +I ++A W + NI S D VI+ G + ++ +L
Sbjct: 99 SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 143
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
SLL++ + NI KEA WT+SNITAG QI V+ GL+P++V +L D K QKEAA
Sbjct: 268 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 324
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 38/47 (80%)
Query: 135 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
+V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct: 2 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 48
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
E+AW ++NI +G S Q V+ G +P +++L + A + ++A
Sbjct: 65 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 108
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLLPYIVNILENGDAKV 52
+LS + KEAAW I+N T+G + QI +++ G++ ++N+L D K+
Sbjct: 310 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 362
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNIL 45
SLL+S +I ++A W + NI S D VI+ G + ++ +L
Sbjct: 95 SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 139
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 40/56 (71%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
SLL++ + NI KEA WT+SNITAG QI V+ GL+P++V++L D K QKEA
Sbjct: 274 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEA 329
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 39/49 (79%)
Query: 133 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
+ +V ++++G+ SSN + ++ AT++ARK+LS+E+ PPID +I AG++P
Sbjct: 6 VNWSVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIP 54
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
E+AW ++NI +G S Q V+ G +P +++L + A + ++A
Sbjct: 71 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 114
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLLPYIVNILENGDAKV 52
S+LS + KEA W ++N T+G + QI +++ G++ ++N+L D K+
Sbjct: 316 SVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKI 368
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNIL 45
SLL+S +I ++A W + NI S D VI+ G + ++ +L
Sbjct: 101 SLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALL 145
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 39/55 (70%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
LLSS + NI KEA WTISNITAGN+ QI VI L+P +V +LE + K +KEA
Sbjct: 261 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 315
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 137 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
+P+M + + S + + ++ AT R++LS+E PPID +I+AGVVP
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 45
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
EAAW ++NI +G S Q V+ +P + +L G +V+++A
Sbjct: 62 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQA 105
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
L +S++ ++++ A WT+SN+ G Q D + LP + ++ + D + +A
Sbjct: 134 GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDA 189
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQID---HVIQEGLLPYIVNILENGDAKV 52
LL + KEA W ISN ++G ++ D +++ +G + + ++LE D ++
Sbjct: 303 LLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 356
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
LLS + A + NI GN Q VI G+LP + +L + ++KEA
Sbjct: 219 LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA 273
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 39/55 (70%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
LLSS + NI KEA WTISNITAGN+ QI VI L+P +V +LE + K +KEA
Sbjct: 261 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 315
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 137 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
+P+M + + S + + ++ AT R++LS+E PPID +I+AGVVP
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 45
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
EAAW ++NI +G S Q V+ +P + +L G +V+++A
Sbjct: 62 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQA 105
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
L +S++ ++++ A WT+SN+ G Q D + LP + ++ + D + +A
Sbjct: 134 GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDA 189
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQID---HVIQEGLLPYIVNILENGDAKV 52
LL + KEA W ISN ++G ++ D +++ +G + + ++LE D ++
Sbjct: 303 LLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 356
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
LLS + A + NI GN Q VI G+LP + +L + ++KEA
Sbjct: 219 LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA 273
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 39/55 (70%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
LLSS + NI KEA WTISNITAGN+ QI VI L+P +V +LE + K +KEA
Sbjct: 262 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEA 316
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 137 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
+P+M + + S + + ++ AT R++LS+E PPID +I+AGVVP
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 46
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
EAAW ++NI +G S Q V+ +P + +L G +V+++A
Sbjct: 63 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQA 106
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
L +S++ ++++ A WT+SN+ G Q D + LP + ++ + D + +A
Sbjct: 135 GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDA 190
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 12 KEAAWTISNITAGNSRQID---HVIQEGLLPYIVNILENGDAKV 52
KEA W ISN ++G ++ D +++ +G + + ++LE D ++
Sbjct: 314 KEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 357
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
LLS + A + NI GN Q VI G+LP + +L + ++KEA
Sbjct: 220 LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA 274
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 39/55 (70%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
LLSS + NI KEA WTISNITAGN+ QI VI L+P +V +LE + K +KEA
Sbjct: 263 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEA 317
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 137 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
+P+M + + S + + ++ AT R++LS+E PPID +I+AGVVP
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 47
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
EAAW ++NI +G S Q V+ +P + +L G +V+++A
Sbjct: 64 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQA 107
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
L +S++ ++++ A WT+SN+ G Q D + LP + ++ + D + +A
Sbjct: 136 GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDA 191
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 12 KEAAWTISNITAGNSRQID---HVIQEGLLPYIVNILENGDAKV 52
KEA W ISN ++G ++ D +++ +G + + ++LE D ++
Sbjct: 315 KEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 358
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
LLS + A + NI GN Q VI G+LP + +L + ++KEA
Sbjct: 221 LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA 275
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 39/55 (70%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
LLSS + NI KEA WTISNITAGN+ QI VI L+P +V +LE + K +KEA
Sbjct: 262 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEA 316
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 137 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
+P+M + + S + + ++ AT R++LS+E PPID +I+AGVVP
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 46
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
EAAW ++NI +G S Q V+ +P + +L G +V+++A
Sbjct: 63 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQA 106
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
L +S++ ++++ A WT+SN+ G Q D + LP + ++ + D + +A
Sbjct: 135 GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDA 190
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 12 KEAAWTISNITAGNSRQID---HVIQEGLLPYIVNILENGDAKV 52
KEA W ISN ++G ++ D +++ +G + + ++LE D ++
Sbjct: 314 KEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 357
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
LLS + A + NI GN Q VI G+LP + +L + ++KEA
Sbjct: 220 LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA 274
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 39/55 (70%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
LLSS + NI KEA WTISNITAGN+ QI VI L+P +V +LE + K +KEA
Sbjct: 263 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEA 317
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 137 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
+P+M + + S + + ++ AT R++LS+E PPID +I+AGVVP
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 47
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
EAAW ++NI +G S Q V+ +P + +L G +V+++A
Sbjct: 64 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQA 107
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
L +S++ ++++ A WT+SN+ G Q D + LP + ++ + D + +A
Sbjct: 136 GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDA 191
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 12 KEAAWTISNITAGNSRQID---HVIQEGLLPYIVNILENGDAKV 52
KEA W ISN ++G ++ D +++ +G + + ++LE D ++
Sbjct: 315 KEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 358
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
LLS + A + NI GN Q VI G+LP + +L + ++KEA
Sbjct: 221 LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA 275
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 59/101 (58%), Gaps = 7/101 (6%)
Query: 83 DEMRRKRCEMNVELRKAHKDDQLFKRR--NIDQLDEIEEENVTVIEPTCMSPIKMTVPEM 140
+E RR+R + VE+RK+ +++ L K+R + + T ++ S +P M
Sbjct: 25 EEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATGVDKKLES-----LPAM 79
Query: 141 IEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
I G+ S + +++ AT RK+LS ER PPI+E+I++GVVP
Sbjct: 80 IGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVP 120
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 1 SLLSSS-RVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
SLL+ + + +I KEA WTISNITAGN QI VI G++ +VN+L+ + ++KEAA
Sbjct: 335 SLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAA 392
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSR-QIDHVIQEGLLPYIVNIL 45
+LL ++ +I KEAAW ISN T+G S QI +++ EG + + ++L
Sbjct: 378 NLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLL 423
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
EAAW ++NI +G S VI G +P V +L + V+++A
Sbjct: 137 EAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQA 180
>pdb|1QGK|B Chain B, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
Length = 44
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 30/37 (81%)
Query: 75 FKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNI 111
FKN GK EMRR+R E+NVELRKA KDDQ+ KRRN+
Sbjct: 7 FKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNV 43
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 1 SLLSSS-RVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
SLL+ + + +I KEA WTISNITAGN QI VI G++ +VN+L+ + ++KEAA
Sbjct: 297 SLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAA 354
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 48/76 (63%), Gaps = 5/76 (6%)
Query: 106 FKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSK 165
F+R+++D D ++ + M+ I ++P MI G+ S + +++ AT RK+LS
Sbjct: 12 FERQHMDSPDLGTDD-----DDKAMADIGSSLPAMIGGVYSDDNNLQLEATTQFRKLLSI 66
Query: 166 ERHPPIDELIEAGVVP 181
ER PPI+E+I++GVVP
Sbjct: 67 ERSPPIEEVIQSGVVP 82
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSR-QIDHVIQEGLLPYIVNIL 45
+LL ++ +I KEAAW ISN T+G S QI +++ EG + + ++L
Sbjct: 340 NLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLL 385
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
EAAW ++NI +G S VI G +P V +L + V+++A
Sbjct: 99 EAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQA 142
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 9 NIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+I KEA WTISNITAGN QI VI + P +++IL+ + + +KEAA
Sbjct: 288 SIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 336
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 130 MSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEA-GVV 180
M+P + +MIE + S +P+ ++ AT+ RK+LSKE +PPIDE+I GVV
Sbjct: 12 MAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVV 63
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
E+AW ++NI +GNS Q VIQ G +P + +L + VQ++A
Sbjct: 81 ESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQA 124
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
S+L ++ KEAAW I+N T+G S QI ++++ G + + ++L D+K+ + A
Sbjct: 322 SILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVA 378
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNIL 45
LLSS ++ ++A W + NI ++ D+V+ +LP ++ +
Sbjct: 112 LLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLF 155
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 9 NIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+I KEA WTISNITAGN QI VI + P +++IL+ + + +KEAA
Sbjct: 291 SIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 130 MSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEA-GVV 180
M+P + +MIE + S +P+ ++ AT+ RK+LSKE +PPIDE+I GVV
Sbjct: 15 MAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVV 66
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
E+AW ++NI +GNS Q VIQ G +P + +L + VQ++A
Sbjct: 84 ESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQA 127
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
S+L ++ KEAAW I+N T+G S QI ++++ G + + ++L D+K+ + A
Sbjct: 325 SILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVA 381
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNIL 45
LLSS ++ ++A W + NI ++ D+V+ +LP ++ +
Sbjct: 115 LLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLF 158
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA--AIN 59
LLSS I++EA W +SNI +G + QI VI G LP +V +L + + ++ +EA A++
Sbjct: 104 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163
Query: 60 TKMSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRK 98
S ++K + K AG + +++ + + N +++K
Sbjct: 164 NIAS---GGNEQKQAVKEAG-ALEKLEQLQSHENEKIQK 198
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
LLSS I++EA W +SNI +G + QI VI G LP +V +L + + ++ +EA
Sbjct: 62 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 116
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
LLSS I++EA W +SNI +G + Q V + G L + + + + K+QKEA
Sbjct: 146 LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 200
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
LLSS I++EA W +SNI +G + QI VI G LP +V +L + + ++ +EA
Sbjct: 62 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 116
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
LLSS I++EA W +SNI +G + QI VI G LP +V +L + + ++ +EA
Sbjct: 104 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 158
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
LLSS I++EA W +SNI +G + Q V + G P + + + + K+QKEA
Sbjct: 146 LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPNEKIQKEA 200
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA--AIN 59
LLSS I++EA W +SNI +G + QI VI G LP +V +L + + ++ +EA A++
Sbjct: 104 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163
Query: 60 TKMSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRK 98
S ++K + K AG + +++ + + N +++K
Sbjct: 164 NIAS---GGNEQKQAVKEAG-ALEKLEQLQSHENEKIQK 198
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
LLSS I++EA W +SNI +G + QI VI G LP +V +L + + ++ +EA
Sbjct: 62 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 116
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
LLSS I++EA W +SNI +G + Q V + G L + + + + K+QKEA
Sbjct: 146 LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 200
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA--AIN 59
LLSS I++EA W +SNI +G + QI VI G LP +V +L + + ++ +EA A++
Sbjct: 146 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 205
Query: 60 TKMSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRK 98
S ++K + K AG + +++ + + N +++K
Sbjct: 206 NIAS---GGNEQKQAVKEAG-ALEKLEQLQSHENEKIQK 240
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
LLSS I++EA W +SNI +G + QI VI G LP +V +L + + ++ +EA
Sbjct: 62 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 116
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
LLSS I++EA W +SNI +G + QI VI G LP +V +L + + ++ +EA
Sbjct: 104 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 158
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
LLSS I++EA W +SNI +G + Q V + G L + + + + K+QKEA
Sbjct: 188 LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 242
>pdb|1QGR|B Chain B, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 27
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 23/26 (88%)
Query: 86 RRKRCEMNVELRKAHKDDQLFKRRNI 111
RR+R E+NVELRKA KDDQ+ KRRN+
Sbjct: 1 RRRRIEVNVELRKAKKDDQMLKRRNV 26
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LL+S+ + KEAA ++NI +G I ++ G + +V +L + D++VQKEAA
Sbjct: 52 LLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAA 107
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LL+S+ + KEAA ++NI +G I ++ G + +V +L + D++VQKEAA
Sbjct: 94 LLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAA 149
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LL+S+ + KEAA ++NI +G I ++ G + +V +L + D++VQKEAA
Sbjct: 136 LLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAA 191
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
LL+S+ + KEAA ++NI +G + I ++ G + + +L + D++VQKEA
Sbjct: 178 LLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEA 232
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LL+S+ KEAA ++ I +G + I ++ G + +V +L + D++VQKEAA
Sbjct: 10 LLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAA 65
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 29.3 bits (64), Expect = 1.2, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIV-NILENGDAKVQKEAAI 58
LL S +N+V AA +SN+T N + V Q G + +V +L GD + E AI
Sbjct: 271 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 328
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIV-NILENGDAKVQKEAAI 58
LL S +N+V AA +SN+T N + V Q G + +V +L GD + E AI
Sbjct: 216 LLGSDDINVVTCAAGILSNLTCNNYKNKXXVCQVGGIEALVRTVLRAGDREDITEPAI 273
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 29.3 bits (64), Expect = 1.5, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIV-NILENGDAKVQKEAAI 58
LL S +N+V AA +SN+T N + V Q G + +V +L GD + E AI
Sbjct: 407 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 464
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIV-NILENGDAKVQKEAAI 58
LL S +N+V AA +SN+T N + V Q G + +V +L GD + E AI
Sbjct: 272 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 329
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIV-NILENGDAKVQKEAAI 58
LL S +N+V AA +SN+T N + V Q G + +V +L GD + E AI
Sbjct: 259 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 316
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIV-NILENGDAKVQKEAAI 58
LL S +N+V AA +SN+T N + V Q G + +V +L GD + E AI
Sbjct: 261 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 318
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIV-NILENGDAKVQKEAAI 58
LL S +N+V AA +SN+T N + V Q G + +V +L GD + E AI
Sbjct: 259 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 316
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIV-NILENGDAKVQKEAAI 58
LL S +N+V AA +SN+T N + V Q G + +V +L GD + E AI
Sbjct: 278 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 335
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIV-NILENGDAKVQKEAAI 58
LL S +N+V AA +SN+T N + V Q G + +V +L GD + E AI
Sbjct: 275 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 332
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIV-NILENGDAKVQKEAAI 58
LL S +N+V AA +SN+T N + V Q G + +V +L GD + E AI
Sbjct: 277 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 334
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIV-NILENGDAKVQKEAAI 58
LL S +N+V AA +SN+T N + V Q G + +V +L GD + E AI
Sbjct: 263 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 320
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIV-NILENGDAKVQKEAAI 58
LL S +N+V AA +SN+T N + V Q G + +V +L GD + E AI
Sbjct: 272 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 329
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIV-NILENGDAKVQKEAAI 58
LL S +N+V AA +SN+T N + V Q G + +V +L GD + E AI
Sbjct: 276 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 333
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIV-NILENGDAKVQKEAAI 58
LL S +N+V AA +SN+T N + V Q G + +V +L GD + E AI
Sbjct: 276 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 333
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIV-NILENGDAKVQKEAAI 58
LL S +N+V AA +SN+T N + V Q G + +V +L GD + E AI
Sbjct: 274 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 331
>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
pdb|4B2G|B Chain B, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
Length = 609
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 65 KVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDE-IEEENVT 123
+V I R F N+ F +RRK ++++ + K D+ ++ +D + + E N +
Sbjct: 413 RVGDILRVTGFHNSAPQFHFVRRKNVLLSID---SDKTDEAELQKAVDNASKLLREVNTS 469
Query: 124 VIEPTCMSPIKMTVP 138
V+E T + K T+P
Sbjct: 470 VVEYTSFADTK-TIP 483
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-EGLLPYIVNILENGD 49
LS VN++ A T+SN+T NS+ V Q G+ I IL GD
Sbjct: 277 LSVDDVNVLTCATGTLSNLTCNNSKNKTLVTQNSGVEALIHAILRAGD 324
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,693,880
Number of Sequences: 62578
Number of extensions: 161923
Number of successful extensions: 608
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 392
Number of HSP's gapped (non-prelim): 224
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)