Query psy10739
Match_columns 187
No_of_seqs 226 out of 779
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 17:18:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10739.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10739hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5064 SRP1 Karyopherin (impo 100.0 6.8E-30 1.5E-34 220.2 6.1 121 63-187 2-123 (526)
2 KOG0166|consensus 99.9 7.9E-25 1.7E-29 197.7 7.0 115 67-187 4-118 (514)
3 KOG0166|consensus 99.9 1.8E-24 3.8E-29 195.5 6.5 167 4-187 120-288 (514)
4 COG5064 SRP1 Karyopherin (impo 99.9 1.9E-24 4.1E-29 186.7 3.7 167 5-187 126-294 (526)
5 PF01749 IBB: Importin beta bi 99.9 4.2E-23 9.1E-28 150.5 4.0 94 65-158 3-97 (97)
6 PLN03200 cellulose synthase-in 99.4 4.1E-13 8.8E-18 136.9 8.1 128 2-187 617-744 (2102)
7 PLN03200 cellulose synthase-in 99.4 1.1E-12 2.4E-17 133.8 9.9 181 2-187 454-660 (2102)
8 PF00514 Arm: Armadillo/beta-c 98.8 1.7E-09 3.6E-14 66.2 2.0 40 25-64 1-40 (41)
9 cd00020 ARM Armadillo/beta-cat 98.8 2.6E-08 5.7E-13 72.0 8.7 66 2-67 15-80 (120)
10 cd00020 ARM Armadillo/beta-cat 98.6 3.3E-08 7.1E-13 71.5 4.0 62 2-63 57-118 (120)
11 PF13513 HEAT_EZ: HEAT-like re 98.3 3.6E-07 7.9E-12 58.9 2.5 53 9-62 2-54 (55)
12 smart00185 ARM Armadillo/beta- 98.0 4.2E-06 9E-11 50.1 2.8 38 26-63 2-39 (41)
13 KOG4224|consensus 98.0 4.1E-05 9E-10 67.9 9.8 163 1-187 215-385 (550)
14 KOG4224|consensus 98.0 1.6E-05 3.5E-10 70.4 7.1 125 4-187 177-301 (550)
15 PF10508 Proteasom_PSMB: Prote 98.0 3.7E-05 8.1E-10 70.7 9.7 159 2-187 85-252 (503)
16 PF04826 Arm_2: Armadillo-like 97.9 0.00012 2.6E-09 61.9 9.5 158 2-186 20-183 (254)
17 PF00514 Arm: Armadillo/beta-c 97.4 6.9E-05 1.5E-09 45.5 1.4 22 2-23 20-41 (41)
18 PF13646 HEAT_2: HEAT repeats; 96.7 0.0011 2.3E-08 45.8 1.9 50 4-64 10-59 (88)
19 smart00185 ARM Armadillo/beta- 96.2 0.0021 4.6E-08 38.0 1.1 22 2-23 20-41 (41)
20 PF14668 RICTOR_V: Rapamycin-i 96.0 0.0092 2E-07 41.2 3.5 55 11-66 4-59 (73)
21 PF13646 HEAT_2: HEAT repeats; 95.6 0.005 1.1E-07 42.3 0.9 49 2-61 39-88 (88)
22 PRK09687 putative lyase; Provi 95.3 0.012 2.5E-07 50.5 2.3 25 135-159 252-277 (280)
23 PF05804 KAP: Kinesin-associat 95.1 0.1 2.2E-06 50.3 8.2 116 11-187 266-381 (708)
24 KOG1048|consensus 94.9 0.027 5.7E-07 53.9 3.8 60 1-60 282-344 (717)
25 PF05804 KAP: Kinesin-associat 94.8 0.15 3.3E-06 49.1 8.7 49 1-50 338-386 (708)
26 KOG1048|consensus 94.7 0.051 1.1E-06 52.0 5.2 62 2-63 241-302 (717)
27 KOG2160|consensus 94.6 0.058 1.2E-06 47.6 4.9 66 2-67 132-198 (342)
28 PF02985 HEAT: HEAT repeat; I 93.9 0.028 6E-07 31.9 1.0 27 37-63 1-27 (31)
29 PRK09687 putative lyase; Provi 92.9 0.29 6.3E-06 41.9 6.1 57 2-64 62-119 (280)
30 PF04826 Arm_2: Armadillo-like 92.8 0.13 2.9E-06 43.5 3.8 66 2-67 62-165 (254)
31 PF13513 HEAT_EZ: HEAT-like re 91.9 0.074 1.6E-06 33.7 1.0 20 2-21 36-55 (55)
32 KOG4199|consensus 90.1 0.39 8.5E-06 42.7 4.0 72 5-76 341-414 (461)
33 PF09759 Atx10homo_assoc: Spin 88.1 1 2.3E-05 33.0 4.5 63 9-71 1-65 (102)
34 PF11538 Snurportin1: Snurport 87.5 0.45 9.8E-06 29.1 1.8 37 71-109 3-39 (40)
35 smart00567 EZ_HEAT E-Z type HE 84.4 1.4 3.1E-05 24.3 2.8 22 9-32 2-23 (30)
36 PRK13800 putative oxidoreducta 84.2 1.4 3.1E-05 43.5 4.5 26 38-63 840-865 (897)
37 PF10508 Proteasom_PSMB: Prote 83.6 1.2 2.6E-05 41.2 3.5 62 2-63 168-229 (503)
38 PF01602 Adaptin_N: Adaptin N 83.4 1.5 3.2E-05 39.7 4.0 54 3-63 88-141 (526)
39 PF02985 HEAT: HEAT repeat; I 82.8 0.39 8.6E-06 27.0 0.0 22 2-23 8-29 (31)
40 KOG2171|consensus 81.6 2 4.3E-05 43.1 4.4 66 2-68 356-422 (1075)
41 PF12755 Vac14_Fab1_bd: Vacuol 79.6 2.5 5.5E-05 30.5 3.4 56 10-66 2-57 (97)
42 PF03130 HEAT_PBS: PBS lyase H 77.9 1.6 3.4E-05 23.9 1.4 14 10-23 1-14 (27)
43 PRK13800 putative oxidoreducta 76.1 7.8 0.00017 38.4 6.7 134 2-162 722-865 (897)
44 PF11698 V-ATPase_H_C: V-ATPas 74.4 2.9 6.2E-05 31.6 2.5 54 7-60 57-110 (119)
45 KOG4199|consensus 71.2 20 0.00044 32.2 7.3 138 8-163 301-443 (461)
46 PF12755 Vac14_Fab1_bd: Vacuol 70.3 4.2 9.1E-05 29.3 2.5 55 2-57 35-89 (97)
47 TIGR02270 conserved hypothetic 65.0 6 0.00013 35.8 2.9 51 2-63 155-205 (410)
48 KOG3132|consensus 64.8 4.5 9.7E-05 34.5 1.9 43 69-112 24-66 (325)
49 PF15178 TOM_sub5: Mitochondri 64.0 7.5 0.00016 24.5 2.3 19 80-98 11-30 (51)
50 KOG4500|consensus 63.8 3.4 7.4E-05 38.1 1.1 71 7-79 55-130 (604)
51 KOG4413|consensus 62.2 11 0.00024 33.7 4.0 98 3-102 91-204 (524)
52 KOG2295|consensus 62.2 3.8 8.2E-05 38.5 1.1 77 8-92 226-319 (648)
53 KOG1293|consensus 60.7 37 0.00081 32.7 7.3 62 2-63 427-488 (678)
54 PF03672 UPF0154: Uncharacteri 57.1 5.9 0.00013 26.6 1.1 19 153-173 16-34 (64)
55 KOG2023|consensus 56.4 4.7 0.0001 38.9 0.7 71 3-76 402-475 (885)
56 KOG2759|consensus 53.2 9 0.0002 34.9 1.9 55 6-60 379-433 (442)
57 COG5231 VMA13 Vacuolar H+-ATPa 51.9 7.6 0.00017 34.5 1.2 57 4-60 366-423 (432)
58 PF10165 Ric8: Guanine nucleot 51.2 29 0.00063 31.6 5.0 74 4-77 42-120 (446)
59 PF01602 Adaptin_N: Adaptin N 50.7 4.6 9.9E-05 36.5 -0.3 58 2-63 122-179 (526)
60 COG5096 Vesicle coat complex, 47.9 20 0.00043 35.1 3.5 51 3-60 101-151 (757)
61 KOG2259|consensus 47.4 14 0.00031 35.7 2.4 86 2-90 242-333 (823)
62 KOG4500|consensus 47.4 23 0.00049 32.9 3.5 45 2-46 95-139 (604)
63 PF03224 V-ATPase_H_N: V-ATPas 47.3 7.8 0.00017 33.3 0.6 161 2-183 113-288 (312)
64 KOG2160|consensus 46.8 20 0.00042 31.9 3.0 50 26-75 114-163 (342)
65 KOG1293|consensus 46.0 25 0.00054 33.8 3.7 65 2-66 469-534 (678)
66 COG1413 FOG: HEAT repeat [Ener 45.9 13 0.00029 31.7 1.8 51 2-63 51-101 (335)
67 KOG0168|consensus 45.9 9.8 0.00021 37.7 1.1 64 2-65 219-284 (1051)
68 KOG1062|consensus 45.7 29 0.00063 34.2 4.2 51 3-60 116-166 (866)
69 COG5218 YCG1 Chromosome conden 45.4 18 0.00039 34.8 2.6 62 3-65 100-161 (885)
70 PF08216 CTNNBL: Catenin-beta- 44.5 29 0.00063 25.7 3.2 41 13-54 65-105 (108)
71 PF12348 CLASP_N: CLASP N term 44.3 12 0.00026 30.1 1.2 57 3-60 62-118 (228)
72 PF05536 Neurochondrin: Neuroc 43.0 34 0.00075 32.1 4.2 52 7-60 112-163 (543)
73 PTZ00429 beta-adaptin; Provisi 42.8 17 0.00037 35.6 2.2 59 2-63 148-206 (746)
74 KOG2973|consensus 42.6 21 0.00045 31.6 2.4 57 2-63 11-69 (353)
75 KOG2171|consensus 42.4 37 0.00079 34.6 4.4 66 2-67 397-463 (1075)
76 PTZ00429 beta-adaptin; Provisi 40.8 35 0.00077 33.4 4.0 54 3-63 114-167 (746)
77 KOG2025|consensus 40.7 19 0.00041 35.2 2.1 61 4-65 95-155 (892)
78 KOG2023|consensus 40.4 25 0.00055 34.2 2.8 62 2-66 182-245 (885)
79 KOG0567|consensus 40.3 1.1E+02 0.0025 26.4 6.5 80 13-97 175-278 (289)
80 TIGR02270 conserved hypothetic 38.3 31 0.00067 31.3 3.0 28 36-63 147-174 (410)
81 PRK01844 hypothetical protein; 37.9 17 0.00037 25.0 1.0 19 153-173 23-41 (72)
82 PRK00523 hypothetical protein; 37.0 18 0.0004 24.8 1.0 19 153-173 24-42 (72)
83 KOG0168|consensus 36.9 17 0.00037 36.1 1.2 52 136-187 168-220 (1051)
84 PF12717 Cnd1: non-SMC mitotic 35.5 43 0.00093 26.2 3.1 58 2-63 33-90 (178)
85 PF07923 N1221: N1221-like pro 35.4 62 0.0013 27.7 4.3 45 3-47 69-127 (293)
86 PF12348 CLASP_N: CLASP N term 35.2 46 0.00099 26.6 3.3 58 3-60 140-201 (228)
87 COG5096 Vesicle coat complex, 33.3 39 0.00084 33.2 2.9 61 2-65 135-195 (757)
88 KOG4535|consensus 31.4 19 0.0004 33.9 0.4 57 7-63 543-601 (728)
89 PF05918 API5: Apoptosis inhib 30.7 38 0.00083 32.1 2.4 53 3-60 68-120 (556)
90 cd00256 VATPase_H VATPase_H, r 29.9 54 0.0012 30.0 3.2 57 5-61 365-421 (429)
91 PF09759 Atx10homo_assoc: Spin 29.7 60 0.0013 23.7 2.8 29 4-32 40-68 (102)
92 KOG2122|consensus 28.3 39 0.00084 35.9 2.1 100 2-110 538-638 (2195)
93 PF11698 V-ATPase_H_C: V-ATPas 27.7 88 0.0019 23.5 3.5 27 138-164 89-115 (119)
94 PF03224 V-ATPase_H_N: V-ATPas 27.0 1E+02 0.0022 26.4 4.2 54 5-58 251-307 (312)
95 PF02755 RPEL: RPEL repeat; I 24.2 55 0.0012 17.9 1.4 16 167-182 9-24 (26)
96 KOG1242|consensus 23.7 87 0.0019 29.8 3.4 43 135-177 295-337 (569)
97 PF02285 COX8: Cytochrome oxid 23.6 42 0.00092 20.8 0.9 12 10-21 26-37 (44)
98 KOG1241|consensus 23.5 97 0.0021 30.6 3.7 66 3-68 373-438 (859)
99 PRK13240 pbsY photosystem II p 23.3 51 0.0011 20.1 1.2 25 10-34 12-36 (40)
100 cd00930 Cyt_c_Oxidase_VIII Cyt 23.2 50 0.0011 20.4 1.2 13 10-22 26-38 (43)
101 PF06298 PsbY: Photosystem II 23.2 38 0.00083 20.2 0.6 22 12-33 14-35 (36)
102 KOG1991|consensus 21.9 54 0.0012 33.1 1.7 58 3-62 471-529 (1010)
103 PF06371 Drf_GBD: Diaphanous G 21.5 1.6E+02 0.0034 22.6 4.1 53 7-60 129-182 (187)
104 PF15398 DUF4619: Domain of un 21.1 77 0.0017 27.3 2.3 26 82-107 156-182 (296)
105 PF12717 Cnd1: non-SMC mitotic 20.6 1.3E+02 0.0028 23.4 3.4 51 8-63 2-52 (178)
106 COG1413 FOG: HEAT repeat [Ener 20.4 87 0.0019 26.6 2.5 55 3-66 189-243 (335)
107 CHL00196 psbY photosystem II p 20.3 50 0.0011 19.7 0.7 21 11-31 13-33 (36)
No 1
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.96 E-value=6.8e-30 Score=220.20 Aligned_cols=121 Identities=34% Similarity=0.504 Sum_probs=100.9
Q ss_pred cchhhhhHhhhhhhccCCC-hHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHH
Q psy10739 63 SQKVAAIDRKASFKNAGKS-FDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMI 141 (187)
Q Consensus 63 ~t~~~~~~R~~~fKn~g~d-~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv 141 (187)
.+..-|++|+.+||+||.. ++++||+|++.+|||||+||||.|.||||......+..+..- +-.......+|+|.
T Consensus 2 ~srf~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss~i----~meqq~~~elp~lt 77 (526)
T COG5064 2 TSRFVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSFI----PMEQQFYSELPQLT 77 (526)
T ss_pred CcccchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhccC----chhHHhhhhhHHHH
Confidence 3466788999999999864 899999999999999999999999999998433332222211 00112234689999
Q ss_pred HHhcCCCHHHHHHHHHHHHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 142 EGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 142 ~~l~S~d~~~ql~a~~~~RklLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
+.++|+|.+.|+.|+..|||+||+|.+||||.||++|+|||||+||
T Consensus 78 ~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm 123 (526)
T COG5064 78 QQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFM 123 (526)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHH
Confidence 9999999999999999999999999999999999999999999996
No 2
>KOG0166|consensus
Probab=99.91 E-value=7.9e-25 Score=197.73 Aligned_cols=115 Identities=37% Similarity=0.536 Sum_probs=94.1
Q ss_pred hhhHhhhhhhccCCChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcC
Q psy10739 67 AAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKS 146 (187)
Q Consensus 67 ~~~~R~~~fKn~g~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S 146 (187)
....|.+.||++++|.++|||||+|..|||||+||+|+|+||||..... ...+ ..+.+......++.++.+++|
T Consensus 4 ~~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~S 77 (514)
T KOG0166|consen 4 SSNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEEL--MLDE----LLSDSQSQASNLELMLAALYS 77 (514)
T ss_pred hhHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhc--cccc----ccchhHHHhhhhHHHHHHHhC
Confidence 4567889999999999999999999999999999999999999832100 0000 001111111347899999999
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 147 SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 147 ~d~~~ql~a~~~~RklLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
+|+..|+.|+++|||+||.++||||++||.+|+||+||+||
T Consensus 78 ~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l 118 (514)
T KOG0166|consen 78 DDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFL 118 (514)
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHH
Confidence 99999999999999999999999999999999999999986
No 3
>KOG0166|consensus
Probab=99.90 E-value=1.8e-24 Score=195.45 Aligned_cols=167 Identities=22% Similarity=0.261 Sum_probs=133.3
Q ss_pred CCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCChH
Q psy10739 4 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKSFD 83 (187)
Q Consensus 4 ~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d~~ 83 (187)
++.++.++.||+|+|.|||+|+++|+++|+++|.+|.|+.+|.+++.+|+..|+||++|..++++..|....+....+ .
T Consensus 120 ~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~-p 198 (514)
T KOG0166|consen 120 RDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALD-P 198 (514)
T ss_pred cCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchH-H
Confidence 355689999999999999999999999999999999999999999999999999999999999999998877743322 1
Q ss_pred HHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccC--CCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy10739 84 EMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIE--PTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARK 161 (187)
Q Consensus 84 e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~--~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~Rk 161 (187)
-+ +-......+.-.||..|. .|+++... ++.-..+...||.+...|++.|++.+.+|||++ .
T Consensus 199 Ll-----------~~l~~~~~~~~lRn~tW~----LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAl-s 262 (514)
T KOG0166|consen 199 LL-----------RLLNKSDKLSMLRNATWT----LSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWAL-S 262 (514)
T ss_pred HH-----------HHhccccchHHHHHHHHH----HHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-H
Confidence 11 111222225566888773 33333111 111112236789999999999999999999999 7
Q ss_pred hhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 162 MLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 162 lLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
+||.+.|+-||.||++|+||++|++|
T Consensus 263 yLsdg~ne~iq~vi~~gvv~~LV~lL 288 (514)
T KOG0166|consen 263 YLTDGSNEKIQMVIDAGVVPRLVDLL 288 (514)
T ss_pred HHhcCChHHHHHHHHccchHHHHHHH
Confidence 88999999999999999999999876
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.89 E-value=1.9e-24 Score=186.65 Aligned_cols=167 Identities=19% Similarity=0.216 Sum_probs=132.7
Q ss_pred CCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCChHH
Q psy10739 5 SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKSFDE 84 (187)
Q Consensus 5 ~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d~~e 84 (187)
+...-++.||+|+|+||++|+..|+..|+|+|.+|.++.+|++++.+||.+|.|||+|.+++++.+|.-.......++
T Consensus 126 ~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galep-- 203 (526)
T COG5064 126 IQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEP-- 203 (526)
T ss_pred cchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHH--
Confidence 455668899999999999999999999999999999999999999999999999999999999988887776522211
Q ss_pred HhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccC--CCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy10739 85 MRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIE--PTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKM 162 (187)
Q Consensus 85 ~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~--~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~Rkl 162 (187)
+ .==|-..+.+-.|. ||.+|. .|+++.+. +++.......+|-+.+.|+|-|++...+|||++ .+
T Consensus 204 l-------L~ll~ss~~~isml--Rn~TWt----LSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAi-SY 269 (526)
T COG5064 204 L-------LGLLLSSAIHISML--RNATWT----LSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAI-SY 269 (526)
T ss_pred H-------HHHHHhccchHHHH--HHhHHH----HHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH-HH
Confidence 1 11112333333444 787773 34444221 222233346799999999999999999999999 99
Q ss_pred hcCCCCCcHHHHHHcCCcccccccC
Q psy10739 163 LSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 163 LS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
||.+.|.-||.||+.|+-+||||+|
T Consensus 270 lsDg~~E~i~avld~g~~~RLvElL 294 (526)
T COG5064 270 LSDGPNEKIQAVLDVGIPGRLVELL 294 (526)
T ss_pred hccCcHHHHHHHHhcCCcHHHHHHh
Confidence 9999999999999999999999986
No 5
>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....
Probab=99.87 E-value=4.2e-23 Score=150.50 Aligned_cols=94 Identities=36% Similarity=0.580 Sum_probs=64.2
Q ss_pred hhhhhHhhhhhhccCCChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhc-ccCCCCCCCccCCHHHHHHH
Q psy10739 65 KVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVT-VIEPTCMSPIKMTVPEMIEG 143 (187)
Q Consensus 65 ~~~~~~R~~~fKn~g~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~-~~~~~~~~~~~~~l~~iv~~ 143 (187)
...++.|++.|||+|+|++++||||+|++|||||+||||+|+||||+....++..+... .............++.||.+
T Consensus 3 ~~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~ 82 (97)
T PF01749_consen 3 SKKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVAG 82 (97)
T ss_dssp ----GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHHH
T ss_pred ccCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHHh
Confidence 45678999999999999999999999999999999999999999998653322211111 00011122334678999999
Q ss_pred hcCCCHHHHHHHHHH
Q psy10739 144 MKSSNPKMRMIATRS 158 (187)
Q Consensus 144 l~S~d~~~ql~a~~~ 158 (187)
++|+|++.||+||++
T Consensus 83 v~S~d~~~ql~Atq~ 97 (97)
T PF01749_consen 83 VNSDDPEVQLEATQQ 97 (97)
T ss_dssp HTSSCHHHHHHHHHH
T ss_pred cCCCCHHHHHHhhCC
Confidence 999999999999985
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.41 E-value=4.1e-13 Score=136.87 Aligned_cols=128 Identities=18% Similarity=0.177 Sum_probs=104.8
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCC
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKS 81 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d 81 (187)
||.|+++.++++|||+|+||++|+.++++.++++|.+|+|+.+|+++++++++||+|+|++.+.......+..
T Consensus 617 LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~------- 689 (2102)
T PLN03200 617 LLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVS------- 689 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHH-------
Confidence 7899999999999999999999999999999999999999999999999999999999998843321100000
Q ss_pred hHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy10739 82 FDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARK 161 (187)
Q Consensus 82 ~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~Rk 161 (187)
+. . ...++.+++.+.++|.+..-.|+.++-.
T Consensus 690 -----------------------~v-----~---------------------~GaV~pL~~LL~~~d~~v~e~Al~ALan 720 (2102)
T PLN03200 690 -----------------------YA-----A---------------------EDAIKPLIKLAKSSSIEVAEQAVCALAN 720 (2102)
T ss_pred -----------------------HH-----H---------------------cCCHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 00 0 0246789999999999999999999988
Q ss_pred hhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 162 MLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 162 lLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
+++... -..++.+.|+||.||++|
T Consensus 721 Ll~~~e--~~~ei~~~~~I~~Lv~lL 744 (2102)
T PLN03200 721 LLSDPE--VAAEALAEDIILPLTRVL 744 (2102)
T ss_pred HHcCch--HHHHHHhcCcHHHHHHHH
Confidence 887543 356678899999999875
No 7
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.39 E-value=1.1e-12 Score=133.77 Aligned_cols=181 Identities=17% Similarity=0.125 Sum_probs=117.4
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCC-
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGK- 80 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~- 80 (187)
||.|++..+++.|+|+++||++|+.+|.++|+++|.+|+|+++|.++++++|+||+|+++|.+.+.++.|..... .|.
T Consensus 454 LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~-aGAI 532 (2102)
T PLN03200 454 LLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVES-AGAV 532 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHH-CCCH
Confidence 688999999999999999999999999999999999999999999999999999999999998765554543322 121
Q ss_pred Ch-------HHHhhhhhhHHHHHHhh---chhhHHhhhhccccc-cchhh---------h---hhcccC--CCCCCCccC
Q psy10739 81 SF-------DEMRRKRCEMNVELRKA---HKDDQLFKRRNIDQL-DEIEE---------E---NVTVIE--PTCMSPIKM 135 (187)
Q Consensus 81 d~-------~e~RrrR~e~~veLRK~---kree~l~KrRn~~~~-~~~~~---------s---~~~~~~--~~~~~~~~~ 135 (187)
.+ .+.+-+ ++..--|-.. -..+++. .-...+ .+++. . ...... .......+.
T Consensus 533 ppLV~LL~sgd~~~q-~~Aa~AL~nLi~~~d~~~I~--~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~g 609 (2102)
T PLN03200 533 PALLWLLKNGGPKGQ-EIAAKTLTKLVRTADAATIS--QLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAAND 609 (2102)
T ss_pred HHHHHHHhCCCHHHH-HHHHHHHHHHHhccchhHHH--HHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccc
Confidence 00 011111 1111111100 0000000 000000 00000 0 000000 000001235
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 136 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 136 ~l~~iv~~l~S~d~~~ql~a~~~~RklLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
-++.|++.+.++++..+.+|+|.+=.+-+ .+...++.+|.+|.||.+|.+|
T Consensus 610 gL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a-~~~d~~~avv~agaIpPLV~LL 660 (2102)
T PLN03200 610 ALRTLIQLLSSSKEETQEKAASVLADIFS-SRQDLCESLATDEIINPCIKLL 660 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHcCCHHHHHHHH
Confidence 79999999999999999999999977766 4556689999999999999875
No 8
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.83 E-value=1.7e-09 Score=66.24 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=37.4
Q ss_pred ChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccc
Q psy10739 25 NSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQ 64 (187)
Q Consensus 25 ~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t 64 (187)
++++++.++++|.+|.|+.+|.+.+.+++++|+|+++|.+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999998863
No 9
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.83 E-value=2.6e-08 Score=72.03 Aligned_cols=66 Identities=39% Similarity=0.573 Sum_probs=60.2
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhh
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVA 67 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~ 67 (187)
+|.+++..++..|+|+|.|++.++++..+.+++.|++|.|+.+|.+.+.+++..|+|++++.+...
T Consensus 15 ~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 15 LLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 467778899999999999999999999999999999999999999999999999999998885443
No 10
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.63 E-value=3.3e-08 Score=71.54 Aligned_cols=62 Identities=31% Similarity=0.477 Sum_probs=57.3
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS 63 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~ 63 (187)
+|.++++.++..|+|+++||+.+.+.....+++.|++|.|+++|...+.++++.|+|++++.
T Consensus 57 ~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 57 LLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 46778899999999999999999888888889999999999999999999999999998765
No 11
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.32 E-value=3.6e-07 Score=58.92 Aligned_cols=53 Identities=23% Similarity=0.441 Sum_probs=47.3
Q ss_pred chhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccc
Q psy10739 9 NIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKM 62 (187)
Q Consensus 9 ~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~ 62 (187)
.+|..|+|+|++++.+..++.+. .-..++|.|+.+|.+.+.+||..|||+|++
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 57899999999999988888877 446689999999999999999999999975
No 12
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=98.04 E-value=4.2e-06 Score=50.06 Aligned_cols=38 Identities=34% Similarity=0.419 Sum_probs=34.8
Q ss_pred hhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739 26 SRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS 63 (187)
Q Consensus 26 ~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~ 63 (187)
+++.+.++++|.+|.|+.+|++++.+++++|+|++.|.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 35788899999999999999999999999999999875
No 13
>KOG4224|consensus
Probab=98.02 E-value=4.1e-05 Score=67.87 Aligned_cols=163 Identities=20% Similarity=0.247 Sum_probs=109.9
Q ss_pred CCCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcC--ChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhcc
Q psy10739 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEG--LLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNA 78 (187)
Q Consensus 1 ~lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~--~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~ 78 (187)
+||.+.+..++.-+|-+||||+-. ..+=+.+..++ ++|.|++++.+++.++|=.|..|+.+.+++.. +.+-... +
T Consensus 215 sll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~-a 291 (550)
T KOG4224|consen 215 SLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVE-A 291 (550)
T ss_pred hhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHh-c
Confidence 478889999999999999999874 44455667787 99999999999999999999999999866643 3333233 2
Q ss_pred CCChHHHhhhhhhHHHHHHhhch----hhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHH-HHH
Q psy10739 79 GKSFDEMRRKRCEMNVELRKAHK----DDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPK-MRM 153 (187)
Q Consensus 79 g~d~~e~RrrR~e~~veLRK~kr----ee~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~-~ql 153 (187)
|-- ..-|+|-..-- -+..+--||+..-+.+. ... .....+..+|..+.-+|.+ .|.
T Consensus 292 g~l---------P~lv~Llqs~~~plilasVaCIrnisihplNe-~lI---------~dagfl~pLVrlL~~~dnEeiqc 352 (550)
T KOG4224|consen 292 GSL---------PLLVELLQSPMGPLILASVACIRNISIHPLNE-VLI---------ADAGFLRPLVRLLRAGDNEEIQC 352 (550)
T ss_pred CCc---------hHHHHHHhCcchhHHHHHHHHHhhcccccCcc-cce---------ecccchhHHHHHHhcCCchhhhh
Confidence 311 23444431100 01223335543211100 000 0124577899988777655 999
Q ss_pred HHHHHHHhhhc-CCCCCcHHHHHHcCCcccccccC
Q psy10739 154 IATRSARKMLS-KERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 154 ~a~~~~RklLS-~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
.|+..+|.|-. .|+| ...++++|.||++.+++
T Consensus 353 hAvstLrnLAasse~n--~~~i~esgAi~kl~eL~ 385 (550)
T KOG4224|consen 353 HAVSTLRNLAASSEHN--VSVIRESGAIPKLIELL 385 (550)
T ss_pred hHHHHHHHHhhhhhhh--hHHHhhcCchHHHHHHH
Confidence 99999998864 4544 56788999999998874
No 14
>KOG4224|consensus
Probab=98.01 E-value=1.6e-05 Score=70.36 Aligned_cols=125 Identities=22% Similarity=0.312 Sum_probs=98.4
Q ss_pred CCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCChH
Q psy10739 4 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKSFD 83 (187)
Q Consensus 4 ~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d~~ 83 (187)
.+.+..++..|.=+++|+|. ..+.=+.++.+|-+|.|+.+|+++|.++|.=+|-++++.. +|.
T Consensus 177 kskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIa---------------Vd~- 239 (550)
T KOG4224|consen 177 KSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIA---------------VDR- 239 (550)
T ss_pred ccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhh---------------hhH-
Confidence 45667899999999999997 4566778899999999999999999999999999998882 220
Q ss_pred HHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHhhh
Q psy10739 84 EMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKML 163 (187)
Q Consensus 84 e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~RklL 163 (187)
|.||. |. +.+| --++.+|+.+.++++..+.+|+-++|.+-
T Consensus 240 --~~Rk~--------------La--------------qaep----------~lv~~Lv~Lmd~~s~kvkcqA~lALrnla 279 (550)
T KOG4224|consen 240 --RARKI--------------LA--------------QAEP----------KLVPALVDLMDDGSDKVKCQAGLALRNLA 279 (550)
T ss_pred --HHHHH--------------HH--------------hccc----------chHHHHHHHHhCCChHHHHHHHHHHhhhc
Confidence 11000 11 0010 24689999999999999999999998887
Q ss_pred cCCCCCcHHHHHHcCCcccccccC
Q psy10739 164 SKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 164 S~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
|.+ .-+-+|.++|-+|.+|++|
T Consensus 280 sdt--~Yq~eiv~ag~lP~lv~Ll 301 (550)
T KOG4224|consen 280 SDT--EYQREIVEAGSLPLLVELL 301 (550)
T ss_pred ccc--hhhhHHHhcCCchHHHHHH
Confidence 754 4566889999999999875
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.00 E-value=3.7e-05 Score=70.70 Aligned_cols=159 Identities=15% Similarity=0.129 Sum_probs=114.4
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhcc---
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNA--- 78 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~--- 78 (187)
.|.|+++.||.-|||.|.+++..+...++.+.+.+++|.++.+|.++|..|.+.|+=++.+....... -...|.+.
T Consensus 85 gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~-~~~l~~~~~~~ 163 (503)
T PF10508_consen 85 GLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG-LEQLFDSNLLS 163 (503)
T ss_pred HhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh-HHHHhCcchHH
Confidence 47899999999999999999998888899999999999999999999999999999998777554332 22233211
Q ss_pred ------CCChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHH
Q psy10739 79 ------GKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMR 152 (187)
Q Consensus 79 ------g~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~q 152 (187)
+...+..|-|=-+..+++=+.. +..+. .. ....-++.++..+.++|.-.|
T Consensus 164 ~L~~l~~~~~~~vR~Rv~el~v~i~~~S--~~~~~--------------~~--------~~sgll~~ll~eL~~dDiLvq 219 (503)
T PF10508_consen 164 KLKSLMSQSSDIVRCRVYELLVEIASHS--PEAAE--------------AV--------VNSGLLDLLLKELDSDDILVQ 219 (503)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHhcC--HHHHH--------------HH--------HhccHHHHHHHHhcCccHHHH
Confidence 1112334444444444442211 11110 00 001358899999999999999
Q ss_pred HHHHHHHHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 153 MIATRSARKMLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 153 l~a~~~~RklLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
+.|+.-+-.|-. .+.-.+-+.+.|++++++.++
T Consensus 220 lnalell~~La~--~~~g~~yL~~~gi~~~L~~~l 252 (503)
T PF10508_consen 220 LNALELLSELAE--TPHGLQYLEQQGIFDKLSNLL 252 (503)
T ss_pred HHHHHHHHHHHc--ChhHHHHHHhCCHHHHHHHHH
Confidence 999999966654 556678888999999988653
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.85 E-value=0.00012 Score=61.94 Aligned_cols=158 Identities=16% Similarity=0.133 Sum_probs=99.8
Q ss_pred CCC-CCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhh-hHhhhhhhccC
Q psy10739 2 LLS-SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAA-IDRKASFKNAG 79 (187)
Q Consensus 2 lL~-~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~-~~R~~~fKn~g 79 (187)
+|. +.++.|+.-|+++++|.++-+.. -..+-+.|.++.+..+|.+++..+|..|.|++.+.+.... ....+.|-+..
T Consensus 20 lL~~t~dp~i~e~al~al~n~aaf~~n-q~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~V 98 (254)
T PF04826_consen 20 LLESTEDPFIQEKALIALGNSAAFPFN-QDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQV 98 (254)
T ss_pred HHhcCCChHHHHHHHHHHHhhccChhH-HHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence 344 45789999999999998764433 3355589999999999999999999999999976644432 23333342211
Q ss_pred CChHHHhhhhhhHHHHHHhhchhhHHhhh---hccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHH
Q psy10739 80 KSFDEMRRKRCEMNVELRKAHKDDQLFKR---RNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIAT 156 (187)
Q Consensus 80 ~d~~e~RrrR~e~~veLRK~kree~l~Kr---Rn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~ 156 (187)
. + ..+. ..-.-+.|+.-- +|++.. ++ ........++.++..+.+++...+..+.
T Consensus 99 c-----~-----~~~s-~~lns~~Q~agLrlL~nLtv~-~~-----------~~~~l~~~i~~ll~LL~~G~~~~k~~vL 155 (254)
T PF04826_consen 99 C-----E-----ETVS-SPLNSEVQLAGLRLLTNLTVT-ND-----------YHHMLANYIPDLLSLLSSGSEKTKVQVL 155 (254)
T ss_pred H-----H-----HHhc-CCCCCHHHHHHHHHHHccCCC-cc-----------hhhhHHhhHHHHHHHHHcCChHHHHHHH
Confidence 0 0 0000 000111222211 333210 00 0111224688999999999999998887
Q ss_pred HHHHhhhcCCCCCc-HHHHHHcCCccccccc
Q psy10739 157 RSARKMLSKERHPP-IDELIEAGVVPICVFQ 186 (187)
Q Consensus 157 ~~~RklLS~e~nPP-Id~VI~aGvVP~~V~~ 186 (187)
..+ --|| .||- ..+++.+++++.|+.+
T Consensus 156 k~L-~nLS--~np~~~~~Ll~~q~~~~~~~L 183 (254)
T PF04826_consen 156 KVL-VNLS--ENPDMTRELLSAQVLSSFLSL 183 (254)
T ss_pred HHH-HHhc--cCHHHHHHHHhccchhHHHHH
Confidence 766 4444 3565 6899999999998865
No 17
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.42 E-value=6.9e-05 Score=45.47 Aligned_cols=22 Identities=41% Similarity=0.732 Sum_probs=20.7
Q ss_pred CCCCCCcchhHHHHHHHHHhcC
Q psy10739 2 LLSSSRVNIVKEAAWTISNITA 23 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~a 23 (187)
||.|++..++++|+|+|+|||+
T Consensus 20 ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 20 LLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHHHHHhC
Confidence 7889999999999999999985
No 18
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.66 E-value=0.0011 Score=45.77 Aligned_cols=50 Identities=18% Similarity=0.306 Sum_probs=42.8
Q ss_pred CCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccc
Q psy10739 4 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQ 64 (187)
Q Consensus 4 ~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t 64 (187)
.++++.+|.+|+|+|+++- +. .++|.|+.+|.+.++.||..|+|+++...
T Consensus 10 ~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~ 59 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGELG--DP---------EAIPALIELLKDEDPMVRRAAARALGRIG 59 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH
T ss_pred cCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 7888999999999999652 22 34899999999999999999999998773
No 19
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.22 E-value=0.0021 Score=37.98 Aligned_cols=22 Identities=50% Similarity=0.853 Sum_probs=19.8
Q ss_pred CCCCCCcchhHHHHHHHHHhcC
Q psy10739 2 LLSSSRVNIVKEAAWTISNITA 23 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~a 23 (187)
||.+++..++++|||+|+||+.
T Consensus 20 ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 20 LLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHcCCCHHHHHHHHHHHHHHcC
Confidence 6778899999999999999973
No 20
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.97 E-value=0.0092 Score=41.25 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=47.0
Q ss_pred hHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcC-Chhhhhhhhccccccchh
Q psy10739 11 VKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG-DAKVQKEAAINTKMSQKV 66 (187)
Q Consensus 11 ~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~-~~~vr~ea~w~l~~~t~~ 66 (187)
.|-|.|++.||++ ++.-++.+.+.++++.++++..+. -..+|-=|.|++++.+..
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 6889999999987 677788888899999999998765 679999999999998544
No 21
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.58 E-value=0.005 Score=42.30 Aligned_cols=49 Identities=24% Similarity=0.401 Sum_probs=39.3
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcC-Chhhhhhhhcccc
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG-DAKVQKEAAINTK 61 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~-~~~vr~ea~w~l~ 61 (187)
+|.++++.+|..|+|+|+.| | +...+|.|.++|.+. +..+|.+|+++|+
T Consensus 39 ~l~d~~~~vr~~a~~aL~~i--~---------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 39 LLKDEDPMVRRAAARALGRI--G---------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTSSSHHHHHHHHHHHHCC--H---------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHh--C---------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 46789999999999999998 2 344788899988875 5567999998875
No 22
>PRK09687 putative lyase; Provisional
Probab=95.27 E-value=0.012 Score=50.46 Aligned_cols=25 Identities=8% Similarity=-0.013 Sum_probs=19.3
Q ss_pred CCHHHHHHHhc-CCCHHHHHHHHHHH
Q psy10739 135 MTVPEMIEGMK-SSNPKMRMIATRSA 159 (187)
Q Consensus 135 ~~l~~iv~~l~-S~d~~~ql~a~~~~ 159 (187)
..+|.+.+.+. +.|+.....|.+++
T Consensus 252 ~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 252 TLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 35788888885 77888888887776
No 23
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=95.07 E-value=0.1 Score=50.27 Aligned_cols=116 Identities=17% Similarity=0.271 Sum_probs=76.9
Q ss_pred hHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCChHHHhhhhh
Q psy10739 11 VKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKSFDEMRRKRC 90 (187)
Q Consensus 11 ~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d~~e~RrrR~ 90 (187)
..=|+..|.|+|....-.. .+.+.|+++.|+.+|...+.++.--+.+.+...+- |+. .
T Consensus 266 lrv~~~lLlNLAed~~ve~-kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi---------~~E-N----------- 323 (708)
T PF05804_consen 266 LRVAFYLLLNLAEDPRVEL-KMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSI---------FKE-N----------- 323 (708)
T ss_pred HHHHHHHHHHHhcChHHHH-HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC---------CHH-H-----------
Confidence 3445668999998665544 44589999999999999888877666666543311 111 0
Q ss_pred hHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHhhhcCCCCCc
Q psy10739 91 EMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPP 170 (187)
Q Consensus 91 e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~RklLS~e~nPP 170 (187)
|++ |.+ ...++.++..+.|++.+.+..|+..+-.| |-..+ -
T Consensus 324 ----------K~~-m~~--------------------------~giV~kL~kLl~s~~~~l~~~aLrlL~NL-Sfd~~-~ 364 (708)
T PF05804_consen 324 ----------KDE-MAE--------------------------SGIVEKLLKLLPSENEDLVNVALRLLFNL-SFDPE-L 364 (708)
T ss_pred ----------HHH-HHH--------------------------cCCHHHHHHHhcCCCHHHHHHHHHHHHHh-CcCHH-H
Confidence 000 110 02467888888899988887777766444 43221 2
Q ss_pred HHHHHHcCCcccccccC
Q psy10739 171 IDELIEAGVVPICVFQR 187 (187)
Q Consensus 171 Id~VI~aGvVP~~V~~~ 187 (187)
-..++++|+||+||.||
T Consensus 365 R~~mV~~GlIPkLv~LL 381 (708)
T PF05804_consen 365 RSQMVSLGLIPKLVELL 381 (708)
T ss_pred HHHHHHCCCcHHHHHHh
Confidence 44788999999999875
No 24
>KOG1048|consensus
Probab=94.90 E-value=0.027 Score=53.91 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=52.6
Q ss_pred CCCCCCCcchhHHHHHHHHHhcCCChh--hHHHHHHcCChHHHHHHhhc-CChhhhhhhhccc
Q psy10739 1 SLLSSSRVNIVKEAAWTISNITAGNSR--QIDHVIQEGLLPYIVNILEN-GDAKVQKEAAINT 60 (187)
Q Consensus 1 ~lL~~~~~~i~kea~w~lSNI~aG~~~--qiq~vi~~~~~p~l~~~l~~-~~~~vr~ea~w~l 60 (187)
.||.|+...|++-|||++=|+.-|+.. .-=++.+.|=+|.|+++|.+ .|.+|++.++=++
T Consensus 282 ~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~L 344 (717)
T KOG1048|consen 282 ALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGIL 344 (717)
T ss_pred HHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHH
Confidence 378999999999999999999998766 66688899999999999987 6999999876444
No 25
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=94.82 E-value=0.15 Score=49.06 Aligned_cols=49 Identities=22% Similarity=0.367 Sum_probs=41.6
Q ss_pred CCCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCCh
Q psy10739 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDA 50 (187)
Q Consensus 1 ~lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~ 50 (187)
+||.+++..++..|++.|.|++-.+.- -..++..|++|.|+.+|..+++
T Consensus 338 kLl~s~~~~l~~~aLrlL~NLSfd~~~-R~~mV~~GlIPkLv~LL~d~~~ 386 (708)
T PF05804_consen 338 KLLPSENEDLVNVALRLLFNLSFDPEL-RSQMVSLGLIPKLVELLKDPNF 386 (708)
T ss_pred HHhcCCCHHHHHHHHHHHHHhCcCHHH-HHHHHHCCCcHHHHHHhCCCch
Confidence 367888889999999999999986554 5588899999999999987653
No 26
>KOG1048|consensus
Probab=94.73 E-value=0.051 Score=52.00 Aligned_cols=62 Identities=23% Similarity=0.313 Sum_probs=55.8
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS 63 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~ 63 (187)
+|.|..+.++-.|.--+-++|-|...--+.|-.-|-+|.||.+|.+...+|++.||||+-|.
T Consensus 241 mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNL 302 (717)
T KOG1048|consen 241 MLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNL 302 (717)
T ss_pred HHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhh
Confidence 57788999999999999999999887666777889999999999999999999999998555
No 27
>KOG2160|consensus
Probab=94.60 E-value=0.058 Score=47.56 Aligned_cols=66 Identities=21% Similarity=0.274 Sum_probs=57.8
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcC-Chhhhhhhhccccccchhh
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG-DAKVQKEAAINTKMSQKVA 67 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~-~~~vr~ea~w~l~~~t~~~ 67 (187)
+|.|++..+|.-|+|+|+-++..|+.--+.|++.|.++.|+.+|++. +..+|.-|.+|++..-..-
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~ 198 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNN 198 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcC
Confidence 47789999999999999999999998888999999999999999875 5688899999997664443
No 28
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.87 E-value=0.028 Score=31.91 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=23.3
Q ss_pred ChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739 37 LLPYIVNILENGDAKVQKEAAINTKMS 63 (187)
Q Consensus 37 ~~p~l~~~l~~~~~~vr~ea~w~l~~~ 63 (187)
++|.++++|.+.+.+||.-|+++++..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i 27 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAI 27 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 479999999999999999999998654
No 29
>PRK09687 putative lyase; Provisional
Probab=92.91 E-value=0.29 Score=41.86 Aligned_cols=57 Identities=23% Similarity=0.138 Sum_probs=38.3
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHH-hhcCChhhhhhhhccccccc
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNI-LENGDAKVQKEAAINTKMSQ 64 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~-l~~~~~~vr~ea~w~l~~~t 64 (187)
|+.|+++.+|..|+|+|+.|-.-... ....+|.|..+ +...++.||..|+.+|+...
T Consensus 62 ll~~~d~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~ 119 (280)
T PRK09687 62 LCSSKNPIERDIGADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHRC 119 (280)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccc
Confidence 56677788888888888887532211 12345677766 56677888888888887763
No 30
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=92.76 E-value=0.13 Score=43.52 Aligned_cols=66 Identities=17% Similarity=0.277 Sum_probs=42.6
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChh--hHHHHHH------------------------------------cCChHHHHH
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSR--QIDHVIQ------------------------------------EGLLPYIVN 43 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~--qiq~vi~------------------------------------~~~~p~l~~ 43 (187)
||.+|++.++..|+|++-|++..... +|+..|. ++.+|.|+.
T Consensus 62 lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~ 141 (254)
T PF04826_consen 62 LLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLS 141 (254)
T ss_pred HcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHH
Confidence 67888888998899999988776433 3332111 123466666
Q ss_pred HhhcCChhhhhhhhccccccchhh
Q psy10739 44 ILENGDAKVQKEAAINTKMSQKVA 67 (187)
Q Consensus 44 ~l~~~~~~vr~ea~w~l~~~t~~~ 67 (187)
+|..++..+|-.+.+++.|.+...
T Consensus 142 LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 142 LLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHHcCChHHHHHHHHHHHHhccCH
Confidence 666777777777777765554443
No 31
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=91.91 E-value=0.074 Score=33.67 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=17.9
Q ss_pred CCCCCCcchhHHHHHHHHHh
Q psy10739 2 LLSSSRVNIVKEAAWTISNI 21 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI 21 (187)
+|.+++..||..|||+|+||
T Consensus 36 ~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 36 LLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HTTSSSHHHHHHHHHHHHCH
T ss_pred HHcCCCHHHHHHHHHHHhcC
Confidence 57788889999999999987
No 32
>KOG4199|consensus
Probab=90.06 E-value=0.39 Score=42.73 Aligned_cols=72 Identities=18% Similarity=0.155 Sum_probs=59.2
Q ss_pred CCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcC--ChhhhhhhhccccccchhhhhHhhhhhh
Q psy10739 5 SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG--DAKVQKEAAINTKMSQKVAAIDRKASFK 76 (187)
Q Consensus 5 ~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~--~~~vr~ea~w~l~~~t~~~~~~R~~~fK 76 (187)
++++.|..|+|-+||=||--.++|-...|++|.--..++.|..- ...+|+.|||.+-|...-+.+.|.-..-
T Consensus 341 ~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~ 414 (461)
T KOG4199|consen 341 SDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA 414 (461)
T ss_pred CCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh
Confidence 45789999999999999999999999999999999999999754 4589999999996664555555544444
No 33
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=88.13 E-value=1 Score=32.98 Aligned_cols=63 Identities=14% Similarity=0.126 Sum_probs=49.5
Q ss_pred chhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhc--CChhhhhhhhccccccchhhhhHh
Q psy10739 9 NIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILEN--GDAKVQKEAAINTKMSQKVAAIDR 71 (187)
Q Consensus 9 ~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~--~~~~vr~ea~w~l~~~t~~~~~~R 71 (187)
+++.+..-.|+|+|..+..--..|.+.|-+|.++..... .++-+|.=|.||+-+...+.++.+
T Consensus 1 g~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ 65 (102)
T PF09759_consen 1 GFKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQ 65 (102)
T ss_pred CcHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHH
Confidence 367888999999999887766666788889999988654 368899999999987766655443
No 34
>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []. Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.
Probab=87.46 E-value=0.45 Score=29.07 Aligned_cols=37 Identities=30% Similarity=0.447 Sum_probs=23.2
Q ss_pred hhhhhhccCCChHHHhhhhhhHHHHHHhhchhhHHhhhh
Q psy10739 71 RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRR 109 (187)
Q Consensus 71 R~~~fKn~g~d~~e~RrrR~e~~veLRK~kree~l~KrR 109 (187)
|...|||++...+.-+|||+ .+|+-|.+|-+....-|
T Consensus 3 R~sqYK~~~~~~~Q~eRR~~--~Le~QK~kR~d~~~~aR 39 (40)
T PF11538_consen 3 RLSQYKNKGSALDQEERRRE--FLERQKNKRLDYVNHAR 39 (40)
T ss_dssp TCSCTT-TTTSCSHHHHHHH--HHHHHHSHHSHHHHHHH
T ss_pred cHHHhhcccchHhHHHHHHH--HHHHHHHHhHHHHHhcc
Confidence 67789998654444444444 67777888877665433
No 35
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=84.36 E-value=1.4 Score=24.28 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=16.4
Q ss_pred chhHHHHHHHHHhcCCChhhHHHH
Q psy10739 9 NIVKEAAWTISNITAGNSRQIDHV 32 (187)
Q Consensus 9 ~i~kea~w~lSNI~aG~~~qiq~v 32 (187)
.+|.+|+|+|+|| |+++-+..+
T Consensus 2 ~vR~~aa~aLg~~--~~~~a~~~L 23 (30)
T smart00567 2 LVRHEAAFALGQL--GDEEAVPAL 23 (30)
T ss_pred HHHHHHHHHHHHc--CCHhHHHHH
Confidence 5799999999999 555544443
No 36
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=84.17 E-value=1.4 Score=43.49 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=17.1
Q ss_pred hHHHHHHhhcCChhhhhhhhcccccc
Q psy10739 38 LPYIVNILENGDAKVQKEAAINTKMS 63 (187)
Q Consensus 38 ~p~l~~~l~~~~~~vr~ea~w~l~~~ 63 (187)
++.|+.+|.+.+..||++|+|+|+-.
T Consensus 840 ~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 840 VPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 36666666666667777777776553
No 37
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=83.56 E-value=1.2 Score=41.19 Aligned_cols=62 Identities=21% Similarity=0.189 Sum_probs=51.6
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS 63 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~ 63 (187)
|+.+++..+|.-+++++.+|+..+++.-+.+.++|+++.++..|.+.|.-+|.-|+=.++..
T Consensus 168 l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~L 229 (503)
T PF10508_consen 168 LMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSEL 229 (503)
T ss_pred HHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 34455777899999999999999999999999999999999999998887776555545433
No 38
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=83.39 E-value=1.5 Score=39.74 Aligned_cols=54 Identities=28% Similarity=0.331 Sum_probs=42.9
Q ss_pred CCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739 3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS 63 (187)
Q Consensus 3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~ 63 (187)
|.|+++.++--|..++|||+ +++-++. ++|.+..+|.+.++.||+-|+-++.-.
T Consensus 88 l~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i 141 (526)
T PF01602_consen 88 LNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKI 141 (526)
T ss_dssp HCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 56888899999999999998 4555544 478899999999999999999886433
No 39
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=82.81 E-value=0.39 Score=27.02 Aligned_cols=22 Identities=23% Similarity=0.287 Sum_probs=19.0
Q ss_pred CCCCCCcchhHHHHHHHHHhcC
Q psy10739 2 LLSSSRVNIVKEAAWTISNITA 23 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~a 23 (187)
+|.+++..+|.-|++++++|+.
T Consensus 8 ~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 8 LLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHh
Confidence 5789999999999999999974
No 40
>KOG2171|consensus
Probab=81.61 E-value=2 Score=43.14 Aligned_cols=66 Identities=23% Similarity=0.256 Sum_probs=57.5
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccc-ccchhhh
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTK-MSQKVAA 68 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~-~~t~~~~ 68 (187)
+|+|++-.-|+-|.-+||=|+.|..+++...++ .++|.++..|..+++.||--||-|++ |+|...|
T Consensus 356 ~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p 422 (1075)
T KOG2171|consen 356 MLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQP 422 (1075)
T ss_pred HhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcH
Confidence 688999999999999999999999999988665 48999999999999999999999985 5554444
No 41
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=79.63 E-value=2.5 Score=30.45 Aligned_cols=56 Identities=18% Similarity=0.270 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchh
Q psy10739 10 IVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKV 66 (187)
Q Consensus 10 i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~ 66 (187)
.|+=+.|+|+-++-|-..++..-++. ++|+++..+...|.+||.=||=++.+....
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~-Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~ 57 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDE-ILPPVLKCFDDQDSRVRYYACEALYNISKV 57 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 46778899999988877777666654 899999999999999999999998777433
No 42
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=77.91 E-value=1.6 Score=23.90 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHhcC
Q psy10739 10 IVKEAAWTISNITA 23 (187)
Q Consensus 10 i~kea~w~lSNI~a 23 (187)
||.+|.|+|++|..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 68899999999976
No 43
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=76.10 E-value=7.8 Score=38.39 Aligned_cols=134 Identities=11% Similarity=0.104 Sum_probs=73.1
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhh--HhhhhhhccC
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAI--DRKASFKNAG 79 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~--~R~~~fKn~g 79 (187)
+|.+++..+|.+|+++|..+-+ .+.|..+|.+.+..||..|+.+|+-.....+. .-+..+-+
T Consensus 722 ~L~D~d~~VR~~Av~aL~~~~~--------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~-- 785 (897)
T PRK13800 722 ALGDPDHRVRIEAVRALVSVDD--------------VESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG-- 785 (897)
T ss_pred HhcCCCHHHHHHHHHHHhcccC--------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc--
Confidence 4678889999999999987621 23456678888888888888887665433221 12222221
Q ss_pred CChHHHhhhhhhHHHHHHhhchhhHH-h-hhhccccccchh------hhhhcccCCCCCCCccCCHHHHHHHhcCCCHHH
Q psy10739 80 KSFDEMRRKRCEMNVELRKAHKDDQL-F-KRRNIDQLDEIE------EENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKM 151 (187)
Q Consensus 80 ~d~~e~RrrR~e~~veLRK~kree~l-~-KrRn~~~~~~~~------~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ 151 (187)
|.+.. -|....-.|.+.-..+.+ . -..... +++. ...+. .......++.++..+...|+..
T Consensus 786 -D~d~~--VR~aA~~aLg~~g~~~~~~~~l~~aL~--d~d~~VR~~Aa~aL~------~l~~~~a~~~L~~~L~D~~~~V 854 (897)
T PRK13800 786 -DPDPL--VRAAALAALAELGCPPDDVAAATAALR--ASAWQVRQGAARALA------GAAADVAVPALVEALTDPHLDV 854 (897)
T ss_pred -CCCHH--HHHHHHHHHHhcCCcchhHHHHHHHhc--CCChHHHHHHHHHHH------hccccchHHHHHHHhcCCCHHH
Confidence 22211 223333334333221111 0 000000 0000 00000 0011246788999999999999
Q ss_pred HHHHHHHHHhh
Q psy10739 152 RMIATRSARKM 162 (187)
Q Consensus 152 ql~a~~~~Rkl 162 (187)
...|.+++.++
T Consensus 855 R~~A~~aL~~~ 865 (897)
T PRK13800 855 RKAAVLALTRW 865 (897)
T ss_pred HHHHHHHHhcc
Confidence 99999999775
No 44
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=74.39 E-value=2.9 Score=31.56 Aligned_cols=54 Identities=13% Similarity=0.178 Sum_probs=40.7
Q ss_pred CcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccc
Q psy10739 7 RVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINT 60 (187)
Q Consensus 7 ~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l 60 (187)
++...-=||--|+-++.--+.-...+-+.|+=..+..+|.++|.+||+||.-|+
T Consensus 57 d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~av 110 (119)
T PF11698_consen 57 DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAV 110 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHH
Confidence 444555577777777765556555555789999999999999999999999886
No 45
>KOG4199|consensus
Probab=71.24 E-value=20 Score=32.17 Aligned_cols=138 Identities=13% Similarity=0.162 Sum_probs=87.8
Q ss_pred cchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhh--cCChhhhhhhhccccccchhhhhHhhhhhhccCC-Ch--
Q psy10739 8 VNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILE--NGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGK-SF-- 82 (187)
Q Consensus 8 ~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~--~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~-d~-- 82 (187)
..+-|++|-.|+-|| |+.+--..++..|..|.++.++. +.++-|-.|++-+++..+=-+|++-.+.|- .|. +.
T Consensus 301 r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie-~G~a~~av 378 (461)
T KOG4199|consen 301 RTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIE-AGAADLAV 378 (461)
T ss_pred HHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHh-cchHHHHH
Confidence 346689999999885 56666778889999999999873 458899999999999988777766666665 442 21
Q ss_pred HHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy10739 83 DEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKM 162 (187)
Q Consensus 83 ~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~Rkl 162 (187)
+.||+ ....-+..++ -..+ -||+..-..+ .+......-++.++....++.+.-.-.|+-++|-|
T Consensus 379 qAmka--hP~~a~vQrn--ac~~--IRNiv~rs~~----------~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 379 QAMKA--HPVAAQVQRN--ACNM--IRNIVVRSAE----------NRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred HHHHh--CcHHHHHHHH--HHHH--HHHHHHhhhh----------ccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 23332 2222222111 1122 2554210000 00011124578899988999998888888888876
Q ss_pred h
Q psy10739 163 L 163 (187)
Q Consensus 163 L 163 (187)
-
T Consensus 443 G 443 (461)
T KOG4199|consen 443 G 443 (461)
T ss_pred C
Confidence 3
No 46
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=70.31 E-value=4.2 Score=29.30 Aligned_cols=55 Identities=13% Similarity=0.113 Sum_probs=41.3
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhh
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~ 57 (187)
.+.+++..||.-||=++.||+-...+.+-. -=..++..|..++...+..||.-|+
T Consensus 35 ~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d~~Vr~~a~ 89 (97)
T PF12755_consen 35 CFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPDENVRSAAE 89 (97)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCchhHHHHHH
Confidence 367788899999999999998543333211 1146788889988999999998774
No 47
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=65.00 E-value=6 Score=35.82 Aligned_cols=51 Identities=12% Similarity=0.060 Sum_probs=41.2
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS 63 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~ 63 (187)
+|.++++.++.+|+.++.-|-. ...+|.|...+.+.+..||.-|.|+++-.
T Consensus 155 ~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 155 ALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 5678888899999998887653 34567788889999999999999998655
No 48
>KOG3132|consensus
Probab=64.81 E-value=4.5 Score=34.48 Aligned_cols=43 Identities=23% Similarity=0.342 Sum_probs=33.8
Q ss_pred hHhhhhhhccCCChHHHhhhhhhHHHHHHhhchhhHHhhhhccc
Q psy10739 69 IDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNID 112 (187)
Q Consensus 69 ~~R~~~fKn~g~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~ 112 (187)
--|...|||+..+++..-|||++ .+||.|.+|-+...+-|+..
T Consensus 24 hpR~sQykn~~s~aeQ~arrr~~-llelQks~r~D~~~~~r~lA 66 (325)
T KOG3132|consen 24 HPRQSQYKNLTSDAEQRARRRAS-LLELQKSSRPDVDPEIRSLA 66 (325)
T ss_pred CchhhhhhhhhhHHHHHHHHHHH-HHHhhhcCCCCccHHHHhhc
Confidence 35889999987666655555554 99999999999898888763
No 49
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=64.04 E-value=7.5 Score=24.53 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=14.0
Q ss_pred CChHHHhhh-hhhHHHHHHh
Q psy10739 80 KSFDEMRRK-RCEMNVELRK 98 (187)
Q Consensus 80 ~d~~e~Rrr-R~e~~veLRK 98 (187)
.|++||++| |+|+.-.+|+
T Consensus 11 ~DPeE~k~kmR~dvissvrn 30 (51)
T PF15178_consen 11 MDPEEMKRKMREDVISSVRN 30 (51)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 489999886 6666666664
No 50
>KOG4500|consensus
Probab=63.83 E-value=3.4 Score=38.07 Aligned_cols=71 Identities=11% Similarity=0.038 Sum_probs=56.2
Q ss_pred CcchhHHHHHHHHHhcCCChhh-----HHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccC
Q psy10739 7 RVNIVKEAAWTISNITAGNSRQ-----IDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAG 79 (187)
Q Consensus 7 ~~~i~kea~w~lSNI~aG~~~q-----iq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g 79 (187)
...+++++.-++.-++- .++ ...-|+++++..|.+..++++.+|-.+.|.+++|++-+.+|.|-..|.-.|
T Consensus 55 ~~tv~~~qssC~A~~sk--~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgG 130 (604)
T KOG4500|consen 55 SDTVYLFQSSCLADRSK--NEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGG 130 (604)
T ss_pred cchhhhhhHHHHHHHhh--hHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCC
Confidence 45677788777777772 222 223488999999999999999999999999999999999888888776434
No 51
>KOG4413|consensus
Probab=62.19 E-value=11 Score=33.73 Aligned_cols=98 Identities=20% Similarity=0.157 Sum_probs=64.0
Q ss_pred CCCCCcchhHHHHHHHHHhcCCC----hhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhh----------
Q psy10739 3 LSSSRVNIVKEAAWTISNITAGN----SRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAA---------- 68 (187)
Q Consensus 3 L~~~~~~i~kea~w~lSNI~aG~----~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~---------- 68 (187)
|-|++.+++--||-.+.-|.... -..|+.|+++|++|.+++.....|.+|-+-|.=.++-.+-...
T Consensus 91 LiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSel 170 (524)
T KOG4413|consen 91 LIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESEL 170 (524)
T ss_pred ccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhccccc
Confidence 45788899999999998886543 2678999999999999999999888887766555432211100
Q ss_pred --hHhhhhhhccCCChHHHhhhhhhHHHHHHhhchh
Q psy10739 69 --IDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKD 102 (187)
Q Consensus 69 --~~R~~~fKn~g~d~~e~RrrR~e~~veLRK~kre 102 (187)
.-+..+. +.+..+-.|=|--+..|+|-.-.++
T Consensus 171 lDdlhlrnl--aakcndiaRvRVleLIieifSiSpe 204 (524)
T KOG4413|consen 171 LDDLHLRNL--AAKCNDIARVRVLELIIEIFSISPE 204 (524)
T ss_pred CChHHHhHH--HhhhhhHHHHHHHHHHHHHHhcCHH
Confidence 0111111 1223445566677777877554443
No 52
>KOG2295|consensus
Probab=62.17 E-value=3.8 Score=38.50 Aligned_cols=77 Identities=21% Similarity=0.136 Sum_probs=46.1
Q ss_pred cchhHHHHHHHHHhcCCCh-hhHHHHHHcCChHHHHHHhhcCCh----------------hhhhhhhccccccchhhhhH
Q psy10739 8 VNIVKEAAWTISNITAGNS-RQIDHVIQEGLLPYIVNILENGDA----------------KVQKEAAINTKMSQKVAAID 70 (187)
Q Consensus 8 ~~i~kea~w~lSNI~aG~~-~qiq~vi~~~~~p~l~~~l~~~~~----------------~vr~ea~w~l~~~t~~~~~~ 70 (187)
.++-||+.|.++||.-+.. ++|.... .-+|.++++.-+... ---+||||||... .
T Consensus 226 ~n~hke~sll~rni~Pnis~aeIe~~c--k~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~i------r 297 (648)
T KOG2295|consen 226 DNTHKECSLLVRNILPNISVAEIENLC--KGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGI------R 297 (648)
T ss_pred hhhhHHHHHHHhccCCcccHHHHHHHh--ccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhc------c
Confidence 4568999999999997743 5554433 334444444222111 0136999999877 3
Q ss_pred hhhhhhccCCChHHHhhhhhhH
Q psy10739 71 RKASFKNAGKSFDEMRRKRCEM 92 (187)
Q Consensus 71 R~~~fKn~g~d~~e~RrrR~e~ 92 (187)
+...|-+.+.+++-.||.|.-.
T Consensus 298 l~s~~~se~en~~i~rrvr~~~ 319 (648)
T KOG2295|consen 298 LRSNFLSESENPDITRRVRPIN 319 (648)
T ss_pred ccccccccccccCccceeccCC
Confidence 3444555555666677766544
No 53
>KOG1293|consensus
Probab=60.73 E-value=37 Score=32.67 Aligned_cols=62 Identities=13% Similarity=0.121 Sum_probs=53.1
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS 63 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~ 63 (187)
||..|...|++-+.=+|-|+.--=++---..+..|.+..|...+.+.++.+|.-+.|++-..
T Consensus 427 ll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l 488 (678)
T KOG1293|consen 427 LLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHL 488 (678)
T ss_pred HhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 56778888999999999999866555556788999999999999999999999999998544
No 54
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=57.11 E-value=5.9 Score=26.64 Aligned_cols=19 Identities=42% Similarity=0.742 Sum_probs=13.4
Q ss_pred HHHHHHHHhhhcCCCCCcHHH
Q psy10739 153 MIATRSARKMLSKERHPPIDE 173 (187)
Q Consensus 153 l~a~~~~RklLS~e~nPPId~ 173 (187)
+-|...++|.| .+||||++
T Consensus 16 f~ar~~~~k~l--~~NPpine 34 (64)
T PF03672_consen 16 FIARKYMEKQL--KENPPINE 34 (64)
T ss_pred HHHHHHHHHHH--HHCCCCCH
Confidence 44666666666 56999986
No 55
>KOG2023|consensus
Probab=56.44 E-value=4.7 Score=38.94 Aligned_cols=71 Identities=18% Similarity=0.308 Sum_probs=50.1
Q ss_pred CCCCCcchhHHHHHHHHHhcCCChhhHHHHHH--cCChHHHHHHhhcCChhhhhhhhccccccchh-hhhHhhhhhh
Q psy10739 3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ--EGLLPYIVNILENGDAKVQKEAAINTKMSQKV-AAIDRKASFK 76 (187)
Q Consensus 3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~--~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~-~~~~R~~~fK 76 (187)
|.|+.=.+|.-+..+++-||.|... -++. ..++|.|+.+|...-+-||+-.||++|--..- ....|.+.||
T Consensus 402 L~~~~W~vrEagvLAlGAIAEGcM~---g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~ 475 (885)
T KOG2023|consen 402 LSSEEWKVREAGVLALGAIAEGCMQ---GFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK 475 (885)
T ss_pred cCcchhhhhhhhHHHHHHHHHHHhh---hcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH
Confidence 5565556777778899999988643 2333 25799999999999999999999998643221 2223556665
No 56
>KOG2759|consensus
Probab=53.16 E-value=9 Score=34.91 Aligned_cols=55 Identities=18% Similarity=0.140 Sum_probs=48.1
Q ss_pred CCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccc
Q psy10739 6 SRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINT 60 (187)
Q Consensus 6 ~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l 60 (187)
.++.+.-=||--|+....--++....|..-|.=..+.++|.|.|++||.+|.-|+
T Consensus 379 ~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlav 433 (442)
T KOG2759|consen 379 NDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAV 433 (442)
T ss_pred CCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHH
Confidence 3477888899999998888888887777899999999999999999999998875
No 57
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=51.93 E-value=7.6 Score=34.54 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=43.1
Q ss_pred CCCCcc-hhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccc
Q psy10739 4 SSSRVN-IVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINT 60 (187)
Q Consensus 4 ~~~~~~-i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l 60 (187)
++..++ ..-=||--|.......++-+..+..-|.=..++++++|+|.+||-||.-|+
T Consensus 366 q~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~ 423 (432)
T COG5231 366 QSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQAL 423 (432)
T ss_pred hcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHH
Confidence 333333 344467677777777777776666689999999999999999999998774
No 58
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=51.20 E-value=29 Score=31.64 Aligned_cols=74 Identities=16% Similarity=0.092 Sum_probs=55.2
Q ss_pred CCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcC-----ChhhhhhhhccccccchhhhhHhhhhhhc
Q psy10739 4 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG-----DAKVQKEAAINTKMSQKVAAIDRKASFKN 77 (187)
Q Consensus 4 ~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~-----~~~vr~ea~w~l~~~t~~~~~~R~~~fKn 77 (187)
..++..+..||.-+|.|+.--++.--+..++.|..+.+++.|+.. +.++.-=.+-.+...|...+..|.+...+
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e 120 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEE 120 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 345678999999999999876665457777999999999999887 55555445555666666666667666554
No 59
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=50.72 E-value=4.6 Score=36.54 Aligned_cols=58 Identities=24% Similarity=0.295 Sum_probs=48.2
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS 63 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~ 63 (187)
+|.|+++.|||.|+-++..|....++.++. . ++|.|..+|...++.|+.-|+-++...
T Consensus 122 ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~---~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 122 LLSDPSPYVRKKAALALLKIYRKDPDLVED---E-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHSSSHHHHHHHHHHHHHHHHHCHCCHHG---G-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHhccCHHHHHH---H-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 567899999999999999998776664432 3 689999999999999999998887555
No 60
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=47.87 E-value=20 Score=35.12 Aligned_cols=51 Identities=24% Similarity=0.291 Sum_probs=28.3
Q ss_pred CCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccc
Q psy10739 3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINT 60 (187)
Q Consensus 3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l 60 (187)
|.|+++-||--|..++|=|= ++.+++ .+++++..+|.+++..|||.|+.|+
T Consensus 101 l~d~N~~iR~~AlR~ls~l~------~~el~~-~~~~~ik~~l~d~~ayVRk~Aalav 151 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLLR------VKELLG-NIIDPIKKLLTDPHAYVRKTAALAV 151 (757)
T ss_pred ccCCCHHHHHHHHHHHHhcC------hHHHHH-HHHHHHHHHccCCcHHHHHHHHHHH
Confidence 34566666666666665543 222222 2455666666666666666666665
No 61
>KOG2259|consensus
Probab=47.44 E-value=14 Score=35.67 Aligned_cols=86 Identities=16% Similarity=0.129 Sum_probs=54.2
Q ss_pred CCCCCCcchhHHH---HHHHHHhcCCChh--hHH-HHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhh
Q psy10739 2 LLSSSRVNIVKEA---AWTISNITAGNSR--QID-HVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASF 75 (187)
Q Consensus 2 lL~~~~~~i~kea---~w~lSNI~aG~~~--qiq-~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~f 75 (187)
+|......||++| .|..+|.+-|..+ +-. ..+| ..+..+++.+...+..||-||+=++|--..-+.+-=.+..
T Consensus 242 ~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTL 320 (823)
T KOG2259|consen 242 HLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTL 320 (823)
T ss_pred HhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHH
Confidence 4566678899999 7999999844322 211 2233 3578899999999999999999998544333322222222
Q ss_pred hccCCChHHHhhhhh
Q psy10739 76 KNAGKSFDEMRRKRC 90 (187)
Q Consensus 76 Kn~g~d~~e~RrrR~ 90 (187)
-+|+. ..+||+|.
T Consensus 321 dKKlm--s~lRRkr~ 333 (823)
T KOG2259|consen 321 DKKLM--SRLRRKRT 333 (823)
T ss_pred HHHHh--hhhhhhhh
Confidence 22332 35666554
No 62
>KOG4500|consensus
Probab=47.43 E-value=23 Score=32.91 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=38.7
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhh
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILE 46 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~ 46 (187)
+++|++..+-..+|.++.|||-.+.+.=.++.+.|--..++++|.
T Consensus 95 ~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~ 139 (604)
T KOG4500|consen 95 TPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLK 139 (604)
T ss_pred CCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhc
Confidence 467888899999999999999999998888888888777777765
No 63
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=47.29 E-value=7.8 Score=33.26 Aligned_cols=161 Identities=18% Similarity=0.216 Sum_probs=87.0
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhc----CChhhhhhhhccccccchhhhhHhhhhhhc
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILEN----GDAKVQKEAAINTKMSQKVAAIDRKASFKN 77 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~----~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn 77 (187)
+|.+++..|+.-|+..++.+++....+-.... .++++.+++.|.+ .+..++.-|+.++++.- ..+..|...+++
T Consensus 113 ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL-~~~~~R~~f~~~ 190 (312)
T PF03224_consen 113 LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL-RSKEYRQVFWKS 190 (312)
T ss_dssp H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH-TSHHHHHHHHTH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh-CcchhHHHHHhc
Confidence 57788999999999999999876655544433 5566888888765 45566777888887763 444577776664
Q ss_pred cCCChHHHhhhhhhHHHHHH------hhchhhHHhhhhcc-cc---ccchhhhhhcccCCCCCCCccCCHHHHHHHhc-C
Q psy10739 78 AGKSFDEMRRKRCEMNVELR------KAHKDDQLFKRRNI-DQ---LDEIEEENVTVIEPTCMSPIKMTVPEMIEGMK-S 146 (187)
Q Consensus 78 ~g~d~~e~RrrR~e~~veLR------K~kree~l~KrRn~-~~---~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~-S 146 (187)
.|.. ..+.+= +..-.=|++-.=-. -| ++.+...... ....++.+++.+. +
T Consensus 191 ~~v~----------~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~---------~~~~i~~L~~i~~~~ 251 (312)
T PF03224_consen 191 NGVS----------PLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELN---------KKYLIPLLADILKDS 251 (312)
T ss_dssp HHHH----------HHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHH---------TTSHHHHHHHHHHH-
T ss_pred CcHH----------HHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHh---------ccchHHHHHHHHHhc
Confidence 4421 111111 00001111100000 01 1111111110 0124566666553 3
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCCcHHHHHHcCCcccc
Q psy10739 147 SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPIC 183 (187)
Q Consensus 147 ~d~~~ql~a~~~~RklLS~e~nPPId~VI~aGvVP~~ 183 (187)
.-+...--++-.+|.+++.....-+..++.+|+.|.+
T Consensus 252 ~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l 288 (312)
T PF03224_consen 252 IKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTL 288 (312)
T ss_dssp -SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHH
T ss_pred ccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHH
Confidence 4566667789999999988766689999999988864
No 64
>KOG2160|consensus
Probab=46.77 E-value=20 Score=31.88 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=37.8
Q ss_pred hhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhh
Q psy10739 26 SRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASF 75 (187)
Q Consensus 26 ~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~f 75 (187)
-+....++..|.+++|+..|.+.+..+|.=|+|+++-+..+-|...-..+
T Consensus 114 iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~ 163 (342)
T KOG2160|consen 114 IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVI 163 (342)
T ss_pred hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 34555677788888888899999999999999999877655454443333
No 65
>KOG1293|consensus
Probab=46.00 E-value=25 Score=33.81 Aligned_cols=65 Identities=9% Similarity=0.119 Sum_probs=54.6
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHH-hhcCChhhhhhhhccccccchh
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNI-LENGDAKVQKEAAINTKMSQKV 66 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~-l~~~~~~vr~ea~w~l~~~t~~ 66 (187)
++.+++++.++-+.|+|-|..=|..+-.+....+.+...++.. ...++..||.++.-.+-|.+++
T Consensus 469 ~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 469 MLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 5678899999999999999999999988888888777665554 5667999999888888888776
No 66
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=45.93 E-value=13 Score=31.66 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=27.0
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS 63 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~ 63 (187)
+|.+++..++..|.|.++.+.. .-.+|.|..+|...++.+|..|+++++..
T Consensus 51 ~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~ 101 (335)
T COG1413 51 LLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGEL 101 (335)
T ss_pred HHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Confidence 3556667777777777544431 12344455555555555555555554333
No 67
>KOG0168|consensus
Probab=45.90 E-value=9.8 Score=37.70 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=52.8
Q ss_pred CCCCC-CcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCCh-hhhhhhhccccccch
Q psy10739 2 LLSSS-RVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDA-KVQKEAAINTKMSQK 65 (187)
Q Consensus 2 lL~~~-~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~-~vr~ea~w~l~~~t~ 65 (187)
||.|. +..|.--||.+|.|++.--+.-+..|++.+.||.|+.-|..=++ +|-.++.-|+-+...
T Consensus 219 LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR 284 (1051)
T KOG0168|consen 219 LLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR 284 (1051)
T ss_pred HHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh
Confidence 56665 47899999999999999889999999999999999998876543 777777777766643
No 68
>KOG1062|consensus
Probab=45.66 E-value=29 Score=34.17 Aligned_cols=51 Identities=27% Similarity=0.374 Sum_probs=43.3
Q ss_pred CCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccc
Q psy10739 3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINT 60 (187)
Q Consensus 3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l 60 (187)
|+|++.-+.--|..+++||+. ++-+.. +.|.+.++|++.+.-|||-|+.|.
T Consensus 116 L~s~nq~vVglAL~alg~i~s--~Emard-----lapeVe~Ll~~~~~~irKKA~Lca 166 (866)
T KOG1062|consen 116 LNSSNQYVVGLALCALGNICS--PEMARD-----LAPEVERLLQHRDPYIRKKAALCA 166 (866)
T ss_pred ccCCCeeehHHHHHHhhccCC--HHHhHH-----hhHHHHHHHhCCCHHHHHHHHHHH
Confidence 678888889999999999984 565554 589999999999999999998874
No 69
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=45.37 E-value=18 Score=34.76 Aligned_cols=62 Identities=23% Similarity=0.254 Sum_probs=51.5
Q ss_pred CCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccch
Q psy10739 3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQK 65 (187)
Q Consensus 3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~ 65 (187)
+.++++.+|+.+|-+|--|... -..|..++-.|++..|..-+-.-+..||.||..+++.-..
T Consensus 100 ~eskdk~VR~r~lqila~~~d~-v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe 161 (885)
T COG5218 100 TESKDKKVRKRSLQILALLSDV-VREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQE 161 (885)
T ss_pred ccCcchhHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 4578899999999988777653 4558888888999999888888899999999999976653
No 70
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=44.52 E-value=29 Score=25.70 Aligned_cols=41 Identities=12% Similarity=0.305 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhh
Q psy10739 13 EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQK 54 (187)
Q Consensus 13 ea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ 54 (187)
++.-.++.+|+ .++--..++..|+++.|+.+|.|.+.+|--
T Consensus 65 ~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 65 EEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 44556776665 557788889999999999999999877643
No 71
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=44.31 E-value=12 Score=30.08 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=40.2
Q ss_pred CCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccc
Q psy10739 3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINT 60 (187)
Q Consensus 3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l 60 (187)
+.+.+..+.++||=+++.++.+-.......+ ..++|.|+..+.++..-++..|.=++
T Consensus 62 l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~~l~~Ll~~~~~~~~~i~~~a~~~L 118 (228)
T PF12348_consen 62 LSDLRSKVSKTACQLLSDLARQLGSHFEPYA-DILLPPLLKKLGDSKKFIREAANNAL 118 (228)
T ss_dssp S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHGGG---HHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHHccccHHHHHHHHHHH
Confidence 4455678999999999999987777776664 44899999999998877887777665
No 72
>PF05536 Neurochondrin: Neurochondrin
Probab=42.98 E-value=34 Score=32.09 Aligned_cols=52 Identities=15% Similarity=0.214 Sum_probs=42.0
Q ss_pred CcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccc
Q psy10739 7 RVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINT 60 (187)
Q Consensus 7 ~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l 60 (187)
...+..||.=+|..|+ ++++--+++++.|.+|.|++++.+ .......|.-++
T Consensus 112 ~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 112 DLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred chhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 3488999999999999 678888999999999999999988 334455554444
No 73
>PTZ00429 beta-adaptin; Provisional
Probab=42.76 E-value=17 Score=35.56 Aligned_cols=59 Identities=15% Similarity=0.163 Sum_probs=38.5
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS 63 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~ 63 (187)
.|.|+++-|||-|+.++.+|-.-.++ .+.+.|+++.|.++|...+..|..=|.-++.-.
T Consensus 148 ~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI 206 (746)
T PTZ00429 148 AVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEV 206 (746)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 35666777777777777777654442 334567777777777777777776666655433
No 74
>KOG2973|consensus
Probab=42.62 E-value=21 Score=31.57 Aligned_cols=57 Identities=23% Similarity=0.212 Sum_probs=40.7
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHH--HcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVI--QEGLLPYIVNILENGDAKVQKEAAINTKMS 63 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi--~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~ 63 (187)
||+++.+.+++-|.-.+++.+++ +-|... +.-.++.|..++...+. -..|+.++.|.
T Consensus 11 ll~~~sP~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnl 69 (353)
T KOG2973|consen 11 LLHSLSPPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNL 69 (353)
T ss_pred HhccCChHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHH
Confidence 68899999999999999999998 444444 34566667777665544 44555666555
No 75
>KOG2171|consensus
Probab=42.41 E-value=37 Score=34.55 Aligned_cols=66 Identities=18% Similarity=0.202 Sum_probs=57.2
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcC-Chhhhhhhhccccccchhh
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG-DAKVQKEAAINTKMSQKVA 67 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~-~~~vr~ea~w~l~~~t~~~ 67 (187)
+|.+|++.||--||-+|+.+++.=...+|.--..-++|.|+..+.+. ..+|+.-|+-++-+-..+-
T Consensus 397 ~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~ 463 (1075)
T KOG2171|consen 397 GLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC 463 (1075)
T ss_pred hcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC
Confidence 58899999999999999999999889999888888999999999876 6699999999976554443
No 76
>PTZ00429 beta-adaptin; Provisional
Probab=40.82 E-value=35 Score=33.40 Aligned_cols=54 Identities=20% Similarity=0.137 Sum_probs=42.1
Q ss_pred CCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739 3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS 63 (187)
Q Consensus 3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~ 63 (187)
|.|+++-+|--|..++|+|-. ++-++. +++.+...|.+.++.|||-|+.|+.-.
T Consensus 114 l~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kl 167 (746)
T PTZ00429 114 TTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKL 167 (746)
T ss_pred cCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 567888999999999999874 333333 356688889999999999999997543
No 77
>KOG2025|consensus
Probab=40.65 E-value=19 Score=35.16 Aligned_cols=61 Identities=13% Similarity=0.131 Sum_probs=50.8
Q ss_pred CCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccch
Q psy10739 4 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQK 65 (187)
Q Consensus 4 ~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~ 65 (187)
.+++..+|+-+|-.|--+.. ...+|...+-.++...+..-|..-.+.||.||..||+.-.+
T Consensus 95 Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~ 155 (892)
T KOG2025|consen 95 ESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG 155 (892)
T ss_pred cCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc
Confidence 46778999999998877765 67788888878888888888888899999999999987763
No 78
>KOG2023|consensus
Probab=40.40 E-value=25 Score=34.16 Aligned_cols=62 Identities=13% Similarity=0.166 Sum_probs=47.7
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHc--CChHHHHHHhhcCChhhhhhhhccccccchh
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQE--GLLPYIVNILENGDAKVQKEAAINTKMSQKV 66 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~--~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~ 66 (187)
+..|+.+.||.+|.-++-.+.- .|.|+++.+ .++..|+.+-...++.|||..|-++.|....
T Consensus 182 f~~h~spkiRs~A~~cvNq~i~---~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 182 FFKHPSPKIRSHAVGCVNQFII---IQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred HHhCCChhHHHHHHhhhhheee---cCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 4579999999999998877763 345555532 4777788877778999999999999887543
No 79
>KOG0567|consensus
Probab=40.30 E-value=1.1e+02 Score=26.42 Aligned_cols=80 Identities=20% Similarity=0.396 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCChhhHHHHHHc-C---------------------ChHHHHHHhhc--CChhhhhhhhccccccchhhh
Q psy10739 13 EAAWTISNITAGNSRQIDHVIQE-G---------------------LLPYIVNILEN--GDAKVQKEAAINTKMSQKVAA 68 (187)
Q Consensus 13 ea~w~lSNI~aG~~~qiq~vi~~-~---------------------~~p~l~~~l~~--~~~~vr~ea~w~l~~~t~~~~ 68 (187)
-|.+.|-|+ |+.++|-++++. + .+|.|...|.. ..+=||-||+-||+-.....-
T Consensus 175 ~amF~LRn~--g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~ 252 (289)
T KOG0567|consen 175 RAMFYLRNI--GTEEAINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADEDC 252 (289)
T ss_pred hhhhHhhcc--CcHHHHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHH
Confidence 355566664 567777777653 1 16777777754 467899999999976644433
Q ss_pred hHhhhhhhccCCChHHHhhhhhhHHHHHH
Q psy10739 69 IDRKASFKNAGKSFDEMRRKRCEMNVELR 97 (187)
Q Consensus 69 ~~R~~~fKn~g~d~~e~RrrR~e~~veLR 97 (187)
-.=++.|- | |.+.+-+.=.++.++++
T Consensus 253 ~~vL~e~~--~-D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 253 VEVLKEYL--G-DEERVVRESCEVALDML 278 (289)
T ss_pred HHHHHHHc--C-CcHHHHHHHHHHHHHHH
Confidence 23344443 3 66666555555555554
No 80
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=38.32 E-value=31 Score=31.27 Aligned_cols=28 Identities=21% Similarity=0.055 Sum_probs=24.2
Q ss_pred CChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739 36 GLLPYIVNILENGDAKVQKEAAINTKMS 63 (187)
Q Consensus 36 ~~~p~l~~~l~~~~~~vr~ea~w~l~~~ 63 (187)
.-.+.|..+|++.++.||.+|+.+++..
T Consensus 147 ~~~~~L~~~L~d~d~~Vra~A~raLG~l 174 (410)
T TIGR02270 147 DPGPALEAALTHEDALVRAAALRALGEL 174 (410)
T ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHhh
Confidence 3467899999999999999999998765
No 81
>PRK01844 hypothetical protein; Provisional
Probab=37.92 E-value=17 Score=25.02 Aligned_cols=19 Identities=37% Similarity=0.726 Sum_probs=12.3
Q ss_pred HHHHHHHHhhhcCCCCCcHHH
Q psy10739 153 MIATRSARKMLSKERHPPIDE 173 (187)
Q Consensus 153 l~a~~~~RklLS~e~nPPId~ 173 (187)
+-|-..+.|+| .+||||+|
T Consensus 23 f~ark~~~k~l--k~NPpine 41 (72)
T PRK01844 23 FIARKYMMNYL--QKNPPINE 41 (72)
T ss_pred HHHHHHHHHHH--HHCCCCCH
Confidence 33445555665 47999987
No 82
>PRK00523 hypothetical protein; Provisional
Probab=36.98 E-value=18 Score=24.84 Aligned_cols=19 Identities=26% Similarity=0.656 Sum_probs=12.3
Q ss_pred HHHHHHHHhhhcCCCCCcHHH
Q psy10739 153 MIATRSARKMLSKERHPPIDE 173 (187)
Q Consensus 153 l~a~~~~RklLS~e~nPPId~ 173 (187)
+-|...+.|+| .+||||+|
T Consensus 24 fiark~~~k~l--~~NPpine 42 (72)
T PRK00523 24 FVSKKMFKKQI--RENPPITE 42 (72)
T ss_pred HHHHHHHHHHH--HHCcCCCH
Confidence 33445555665 46999987
No 83
>KOG0168|consensus
Probab=36.90 E-value=17 Score=36.08 Aligned_cols=52 Identities=15% Similarity=0.272 Sum_probs=38.1
Q ss_pred CHHHHHHHhcCC-CHHHHHHHHHHHHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 136 TVPEMIEGMKSS-NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 136 ~l~~iv~~l~S~-d~~~ql~a~~~~RklLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
.+.+|++++.+. |+..|++|...+=.+||.+...-.+-+----+||.+|.+|
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL 220 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALL 220 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHH
Confidence 678899999887 9999999999999999987654333221123667777654
No 84
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=35.47 E-value=43 Score=26.24 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=41.5
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS 63 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~ 63 (187)
.|.++++.+|+.|.-+++++.....-.++ ..++..++.+|...+.+||.-|...+.-.
T Consensus 33 ~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~ 90 (178)
T PF12717_consen 33 CLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKLLVDENPEIRSLARSFFSEL 90 (178)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 47788899999999999998754333222 22346777788888889998888776433
No 85
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=35.38 E-value=62 Score=27.70 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=36.4
Q ss_pred CCCCCcchhHHHHHHHHHhcCCC-------hhhHHHHH-------HcCChHHHHHHhhc
Q psy10739 3 LSSSRVNIVKEAAWTISNITAGN-------SRQIDHVI-------QEGLLPYIVNILEN 47 (187)
Q Consensus 3 L~~~~~~i~kea~w~lSNI~aG~-------~~qiq~vi-------~~~~~p~l~~~l~~ 47 (187)
|.+.+...+-+|+-+|..|+-|. .+|++.+. ++|+++.|+++|..
T Consensus 69 L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 69 LESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred ccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45667788899999999999885 57777654 56999999999875
No 86
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=35.23 E-value=46 Score=26.61 Aligned_cols=58 Identities=19% Similarity=0.195 Sum_probs=37.2
Q ss_pred CCCCCcchhHHHHHHHHHhcCCCh---hhHHHHH-HcCChHHHHHHhhcCChhhhhhhhccc
Q psy10739 3 LSSSRVNIVKEAAWTISNITAGNS---RQIDHVI-QEGLLPYIVNILENGDAKVQKEAAINT 60 (187)
Q Consensus 3 L~~~~~~i~kea~w~lSNI~aG~~---~qiq~vi-~~~~~p~l~~~l~~~~~~vr~ea~w~l 60 (187)
+.|.++.+|.+++=.+..+..... ..++.-. -..+++.+...|..++.+||+.|-=++
T Consensus 140 ~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~ 201 (228)
T PF12348_consen 140 LKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECL 201 (228)
T ss_dssp TT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 456778888888888888865433 4443322 145788999999999999998665444
No 87
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=33.29 E-value=39 Score=33.20 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=51.2
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccch
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQK 65 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~ 65 (187)
+|+|+++-+||.|+-+|-+|-.=+.+ .+.+.|++-.+..++...++.|...|.-++.....
T Consensus 135 ~l~d~~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 135 LLTDPHAYVRKTAALAVAKLYRLDKD---LYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HccCCcHHHHHHHHHHHHHHHhcCHh---hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 68899999999999999999843333 55678899999999999999999999999866533
No 88
>KOG4535|consensus
Probab=31.36 E-value=19 Score=33.90 Aligned_cols=57 Identities=11% Similarity=0.163 Sum_probs=40.8
Q ss_pred CcchhHHHHHHHHHhcCCChhhHHHH-HHcCChHHHHHHhh-cCChhhhhhhhcccccc
Q psy10739 7 RVNIVKEAAWTISNITAGNSRQIDHV-IQEGLLPYIVNILE-NGDAKVQKEAAINTKMS 63 (187)
Q Consensus 7 ~~~i~kea~w~lSNI~aG~~~qiq~v-i~~~~~p~l~~~l~-~~~~~vr~ea~w~l~~~ 63 (187)
...++=+||.++||+.....--.|.. ....++|.|..++. +.+|+||..|+=+++..
T Consensus 543 ~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp 601 (728)
T KOG4535|consen 543 AMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVP 601 (728)
T ss_pred ccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCC
Confidence 35688899999999987543322222 12346777777764 56999999999998776
No 89
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=30.74 E-value=38 Score=32.05 Aligned_cols=53 Identities=17% Similarity=0.242 Sum_probs=34.8
Q ss_pred CCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccc
Q psy10739 3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINT 60 (187)
Q Consensus 3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l 60 (187)
....+..||+.|.-.|..+|-++.+.+..|+| .|+.+|.+.+..-..-+-++|
T Consensus 68 cEDed~~iR~~aik~lp~~ck~~~~~v~kvaD-----vL~QlL~tdd~~E~~~v~~sL 120 (556)
T PF05918_consen 68 CEDEDVQIRKQAIKGLPQLCKDNPEHVSKVAD-----VLVQLLQTDDPVELDAVKNSL 120 (556)
T ss_dssp HT-SSHHHHHHHHHHGGGG--T--T-HHHHHH-----HHHHHTT---HHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHhHHHHHHhHHHHHhHHHH-----HHHHHHhcccHHHHHHHHHHH
Confidence 34567889999999999999999999999877 488888888765555555554
No 90
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=29.93 E-value=54 Score=30.00 Aligned_cols=57 Identities=25% Similarity=0.218 Sum_probs=44.2
Q ss_pred CCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccc
Q psy10739 5 SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTK 61 (187)
Q Consensus 5 ~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~ 61 (187)
|.++.+.-=||--|+..+.--+..-..+-+-|.=..++.+|.|+|.+||+||.-|+.
T Consensus 365 s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQ 421 (429)
T cd00256 365 SVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQ 421 (429)
T ss_pred CCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 446666777888888887654444444446788899999999999999999998864
No 91
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=29.73 E-value=60 Score=23.68 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=23.3
Q ss_pred CCCCcchhHHHHHHHHHhcCCChhhHHHH
Q psy10739 4 SSSRVNIVKEAAWTISNITAGNSRQIDHV 32 (187)
Q Consensus 4 ~~~~~~i~kea~w~lSNI~aG~~~qiq~v 32 (187)
+..++-++.=|.|+|=|++.|+.+--+.|
T Consensus 40 D~~nP~irEwai~aiRnL~e~n~eNQ~~I 68 (102)
T PF09759_consen 40 DDHNPFIREWAIFAIRNLCEGNPENQEFI 68 (102)
T ss_pred CcccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34568899999999999999988754444
No 92
>KOG2122|consensus
Probab=28.32 E-value=39 Score=35.94 Aligned_cols=100 Identities=17% Similarity=0.189 Sum_probs=67.9
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCC-
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGK- 80 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~- 80 (187)
+|.+..-.|.-.||=+|=|+.|-+.+--|++.|.|.+|.|-+++++....+-.-++=+|-|.-.+.| ..|+....
T Consensus 538 ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP----Akq~~~~~~ 613 (2195)
T KOG2122|consen 538 HLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP----AKQASHRLM 613 (2195)
T ss_pred HhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc----hhhhhhccc
Confidence 3556677899999999999999988888899999999999999998877666666666644433322 22322110
Q ss_pred ChHHHhhhhhhHHHHHHhhchhhHHhhhhc
Q psy10739 81 SFDEMRRKRCEMNVELRKAHKDDQLFKRRN 110 (187)
Q Consensus 81 d~~e~RrrR~e~~veLRK~kree~l~KrRn 110 (187)
+. -+---.+..||+|--|.-+-.|.
T Consensus 614 ~~-----g~svgsL~vrKqkale~eL~~rh 638 (2195)
T KOG2122|consen 614 SP-----GSSVGSLAVRKQKALEAELDARH 638 (2195)
T ss_pred Cc-----cccccchhhhHHhhhccchhhhH
Confidence 10 01112677888877775555554
No 93
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=27.68 E-value=88 Score=23.52 Aligned_cols=27 Identities=22% Similarity=0.397 Sum_probs=22.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhhc
Q psy10739 138 PEMIEGMKSSNPKMRMIATRSARKMLS 164 (187)
Q Consensus 138 ~~iv~~l~S~d~~~ql~a~~~~RklLS 164 (187)
+.+++.+.+.|++...+|..++-|+++
T Consensus 89 ~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 89 ERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 567788899999999999999888765
No 94
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=27.00 E-value=1e+02 Score=26.38 Aligned_cols=54 Identities=19% Similarity=0.336 Sum_probs=38.0
Q ss_pred CCCcchhHHHHHHHHHhcCCChh-hHHHHHHcCChHHHHHHhhc--CChhhhhhhhc
Q psy10739 5 SSRVNIVKEAAWTISNITAGNSR-QIDHVIQEGLLPYIVNILEN--GDAKVQKEAAI 58 (187)
Q Consensus 5 ~~~~~i~kea~w~lSNI~aG~~~-qiq~vi~~~~~p~l~~~l~~--~~~~vr~ea~w 58 (187)
+.++.|.+=+..++-|+...... -+..++++|++|.+-.+... .|.++.....|
T Consensus 251 ~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~ 307 (312)
T PF03224_consen 251 SIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLEF 307 (312)
T ss_dssp --SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 45677888899999999877665 67788899988866665533 47777765544
No 95
>PF02755 RPEL: RPEL repeat; InterPro: IPR004018 The RPEL repeat is named after four conserved amino acids it contains. The function of the RPEL repeat is unknown however it might be a DNA binding repeat based on the observation that Q9VZY2 from SWISSPROT contains a SAP domain that is also implicated in DNA binding.; PDB: 2YJE_M 2V52_M 2YJF_M 2V51_E.
Probab=24.15 E-value=55 Score=17.90 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=10.4
Q ss_pred CCCcHHHHHHcCCccc
Q psy10739 167 RHPPIDELIEAGVVPI 182 (187)
Q Consensus 167 ~nPPId~VI~aGvVP~ 182 (187)
.-|..+++|+.||++.
T Consensus 9 ~RP~~~eLv~r~IL~~ 24 (26)
T PF02755_consen 9 QRPTREELVERNILKE 24 (26)
T ss_dssp T---HHHHHHTTSS-S
T ss_pred cCCCHHHHHHcCCCCC
Confidence 4699999999999873
No 96
>KOG1242|consensus
Probab=23.65 E-value=87 Score=29.77 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=38.7
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHhhhcCCCCCcHHHHHHc
Q psy10739 135 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEA 177 (187)
Q Consensus 135 ~~l~~iv~~l~S~d~~~ql~a~~~~RklLS~e~nPPId~VI~a 177 (187)
.-+|.+.+-++..+++.+-.|...+.++-|...||-|+..|..
T Consensus 295 ~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~ 337 (569)
T KOG1242|consen 295 DLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPT 337 (569)
T ss_pred HhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 4678889999999999999999999999999999999987654
No 97
>PF02285 COX8: Cytochrome oxidase c subunit VIII; InterPro: IPR003205 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits.This family is composed of cytochrome c oxidase subunit VIII. ; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG3_Z 3ABM_M 1OCC_Z 3ASO_Z 3AG2_Z 3ABL_M 3AG4_M 3AG1_M 3ASN_M 1OCZ_M ....
Probab=23.57 E-value=42 Score=20.83 Aligned_cols=12 Identities=25% Similarity=0.758 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHh
Q psy10739 10 IVKEAAWTISNI 21 (187)
Q Consensus 10 i~kea~w~lSNI 21 (187)
+.--+.|+|||+
T Consensus 26 ~L~PagWVLshL 37 (44)
T PF02285_consen 26 FLGPAGWVLSHL 37 (44)
T ss_dssp HHHHHHHHHHTH
T ss_pred HHhhHHHHHHHH
Confidence 344578999997
No 98
>KOG1241|consensus
Probab=23.50 E-value=97 Score=30.60 Aligned_cols=66 Identities=17% Similarity=0.132 Sum_probs=50.9
Q ss_pred CCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhh
Q psy10739 3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAA 68 (187)
Q Consensus 3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~ 68 (187)
+++|+-.-+.-|.-+..-|--|...---.-+-.+.+|.++.++.....-+|.-++|+++-....-+
T Consensus 373 i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~ 438 (859)
T KOG1241|consen 373 IQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP 438 (859)
T ss_pred cCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch
Confidence 345555566677888899999976555555667789999999998889999999999876655444
No 99
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=23.33 E-value=51 Score=20.09 Aligned_cols=25 Identities=24% Similarity=0.520 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHhcCCChhhHHHHHH
Q psy10739 10 IVKEAAWTISNITAGNSRQIDHVIQ 34 (187)
Q Consensus 10 i~kea~w~lSNI~aG~~~qiq~vi~ 34 (187)
|.--+.|++-||-.---.|+|.++.
T Consensus 12 il~A~~Wa~fNIg~~Al~Q~q~~~~ 36 (40)
T PRK13240 12 ILAAAGWAVFNIGKAAREQFQRFLN 36 (40)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 3445889999998767788887764
No 100
>cd00930 Cyt_c_Oxidase_VIII Cytochrome oxidase c subunit VIII. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIII is the smallest of the nuclear-encoded subunits. It exists in muscle-specific and non-muscle-specific isoforms that are differently expressed in different species, suggesting species-specific regulation of energy metabolism.
Probab=23.20 E-value=50 Score=20.43 Aligned_cols=13 Identities=23% Similarity=0.672 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHhc
Q psy10739 10 IVKEAAWTISNIT 22 (187)
Q Consensus 10 i~kea~w~lSNI~ 22 (187)
+.--+.|+|||+-
T Consensus 26 ~L~p~gWVLshL~ 38 (43)
T cd00930 26 FLLPAGWVLSHLE 38 (43)
T ss_pred HHhhHHHHHHHHH
Confidence 3445789999974
No 101
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=23.18 E-value=38 Score=20.15 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCChhhHHHHH
Q psy10739 12 KEAAWTISNITAGNSRQIDHVI 33 (187)
Q Consensus 12 kea~w~lSNI~aG~~~qiq~vi 33 (187)
--+.|++-||-.---.|+|.++
T Consensus 14 ~A~gWa~fNIg~~Al~Q~~~~~ 35 (36)
T PF06298_consen 14 PAAGWALFNIGRAALNQLQRML 35 (36)
T ss_pred HHHHHHHHHhHHHHHHHHHHhh
Confidence 4578999999765567776653
No 102
>KOG1991|consensus
Probab=21.90 E-value=54 Score=33.07 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=38.4
Q ss_pred CCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhh-cCChhhhhhhhccccc
Q psy10739 3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILE-NGDAKVQKEAAINTKM 62 (187)
Q Consensus 3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~-~~~~~vr~ea~w~l~~ 62 (187)
++++---+|--|||++|-++.=.-. ...+-..++......|. +.+.-||-||+.|+.+
T Consensus 471 f~s~~g~Lrarac~vl~~~~~~df~--d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~ 529 (1010)
T KOG1991|consen 471 FQSPYGYLRARACWVLSQFSSIDFK--DPNNLSEALELTHNCLLNDNELPVRVEAALALQS 529 (1010)
T ss_pred hcCchhHHHHHHHHHHHHHHhccCC--ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHH
Confidence 4566667899999999999842110 01112334455566666 6788999999999843
No 103
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=21.46 E-value=1.6e+02 Score=22.63 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=40.5
Q ss_pred CcchhHHHHHHHHHhcCCChhhHHHHHH-cCChHHHHHHhhcCChhhhhhhhccc
Q psy10739 7 RVNIVKEAAWTISNITAGNSRQIDHVIQ-EGLLPYIVNILENGDAKVQKEAAINT 60 (187)
Q Consensus 7 ~~~i~kea~w~lSNI~aG~~~qiq~vi~-~~~~p~l~~~l~~~~~~vr~ea~w~l 60 (187)
+..+..++.-++--|.- +..-...|++ .+++..|+..|.+.+..+|+.|+=.|
T Consensus 129 ~~~~~~~~l~Clkal~n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL 182 (187)
T PF06371_consen 129 DIDIEHECLRCLKALMN-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEIL 182 (187)
T ss_dssp CHHHHHHHHHHHHHHTS-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHc-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34577888888877775 4566888886 79999999999999999999886544
No 104
>PF15398 DUF4619: Domain of unknown function (DUF4619)
Probab=21.08 E-value=77 Score=27.31 Aligned_cols=26 Identities=42% Similarity=0.658 Sum_probs=20.8
Q ss_pred hHHHhhhhhhHHHHHHhh-chhhHHhh
Q psy10739 82 FDEMRRKRCEMNVELRKA-HKDDQLFK 107 (187)
Q Consensus 82 ~~e~RrrR~e~~veLRK~-kree~l~K 107 (187)
-=||-|+|.|.++||.|. +|+..+.|
T Consensus 156 mLEmnrkrqEaq~ELKk~lhrearink 182 (296)
T PF15398_consen 156 MLEMNRKRQEAQMELKKSLHREARINK 182 (296)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhh
Confidence 358889999999999887 66666665
No 105
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=20.58 E-value=1.3e+02 Score=23.44 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=37.2
Q ss_pred cchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739 8 VNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS 63 (187)
Q Consensus 8 ~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~ 63 (187)
+.||-.+.-+++-++--=+.-+ ...+|.+...|.+.++.||+.|.-+++-.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~L 52 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHL 52 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 4677777777777764333322 23578899999999999999999887543
No 106
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=20.40 E-value=87 Score=26.61 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=41.3
Q ss_pred CCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchh
Q psy10739 3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKV 66 (187)
Q Consensus 3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~ 66 (187)
|.++...++..|.-++..+..++ ..+.+.++..++..+..+|..++-+++.....
T Consensus 189 l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~ 243 (335)
T COG1413 189 LEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALGEIGDE 243 (335)
T ss_pred HhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcc
Confidence 44555667777887887777765 45667888888889999999999998777433
No 107
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=20.30 E-value=50 Score=19.65 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=15.0
Q ss_pred hHHHHHHHHHhcCCChhhHHH
Q psy10739 11 VKEAAWTISNITAGNSRQIDH 31 (187)
Q Consensus 11 ~kea~w~lSNI~aG~~~qiq~ 31 (187)
.--+.|++-||-.---.|+|.
T Consensus 13 l~A~~Wa~fNIg~~Al~Q~q~ 33 (36)
T CHL00196 13 LAAASWALFNIGRLAIQQIQR 33 (36)
T ss_pred HHHHHHHHHHhHHHHHHHHHH
Confidence 445889999997655566654
Done!