Query psy10739
Match_columns 187
No_of_seqs 226 out of 779
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 17:19:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10739.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10739hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tpo_A Importin subunit alpha- 100.0 1.3E-30 4.4E-35 235.0 3.1 122 65-187 7-128 (529)
2 4b8j_A Importin subunit alpha- 99.8 3.6E-21 1.2E-25 171.6 3.2 118 66-187 9-126 (528)
3 1wa5_B Importin alpha subunit; 99.8 2.5E-21 8.5E-26 173.2 0.5 128 60-187 6-139 (530)
4 3ul1_B Importin subunit alpha- 99.7 1.5E-17 5E-22 149.4 3.9 171 2-187 108-283 (510)
5 1xqr_A HSPBP1 protein; armadil 99.6 2.6E-16 9E-21 133.7 6.7 129 1-187 89-218 (296)
6 3tpo_A Importin subunit alpha- 99.6 7.5E-17 2.6E-21 145.1 3.3 168 5-187 131-302 (529)
7 3ul1_B Importin subunit alpha- 99.6 3.8E-16 1.3E-20 140.2 5.1 95 90-187 15-109 (510)
8 4db6_A Armadillo repeat protei 99.5 9.3E-15 3.2E-19 114.7 7.3 128 2-187 20-147 (210)
9 4db6_A Armadillo repeat protei 99.5 4.6E-14 1.6E-18 110.7 7.5 128 2-187 62-189 (210)
10 4b8j_A Importin subunit alpha- 99.4 1.2E-13 4.2E-18 122.8 4.3 169 2-187 125-295 (528)
11 4db8_A Armadillo-repeat protei 99.4 7.5E-13 2.6E-17 106.4 7.6 128 2-187 62-189 (252)
12 1xqr_A HSPBP1 protein; armadil 99.4 3.1E-13 1E-17 114.8 5.0 65 2-66 132-197 (296)
13 4db8_A Armadillo-repeat protei 99.4 1.2E-12 4.2E-17 105.1 8.2 128 2-187 104-231 (252)
14 3now_A UNC-45 protein, SD10334 99.4 2.8E-13 9.5E-18 128.8 5.1 129 2-187 631-759 (810)
15 1wa5_B Importin alpha subunit; 99.3 1.2E-12 4.1E-17 116.8 7.1 168 2-187 138-308 (530)
16 3now_A UNC-45 protein, SD10334 99.3 4.3E-13 1.5E-17 127.4 1.8 167 2-187 429-632 (810)
17 4hxt_A De novo protein OR329; 99.3 3.3E-12 1.1E-16 101.6 6.6 128 2-187 10-137 (252)
18 2jdq_A Importin alpha-1 subuni 99.3 3.1E-12 1.1E-16 110.2 6.7 169 2-187 72-243 (450)
19 1xm9_A Plakophilin 1; armadill 99.3 1.6E-12 5.4E-17 115.3 4.7 141 2-187 52-194 (457)
20 3nmw_A APC variant protein; AR 99.3 7.6E-12 2.6E-16 108.5 8.7 167 2-187 135-314 (354)
21 3tt9_A Plakophilin-2; cell adh 99.3 6E-12 2.1E-16 103.7 7.3 126 2-187 16-144 (233)
22 1xm9_A Plakophilin 1; armadill 99.3 4.6E-12 1.6E-16 112.4 6.8 126 2-187 10-136 (457)
23 2jdq_A Importin alpha-1 subuni 99.3 3.6E-12 1.2E-16 109.8 5.6 129 2-187 242-370 (450)
24 4hxt_A De novo protein OR329; 99.3 7.6E-12 2.6E-16 99.5 6.8 128 2-187 52-179 (252)
25 3nmw_A APC variant protein; AR 99.3 7E-12 2.4E-16 108.8 6.9 107 2-165 222-335 (354)
26 3nmz_A APC variant protein; pr 99.2 1.4E-11 4.8E-16 110.4 7.4 107 2-165 338-451 (458)
27 1jdh_A Beta-catenin; beta-cate 99.2 3.5E-11 1.2E-15 105.8 9.2 147 2-187 363-510 (529)
28 3nmz_A APC variant protein; pr 99.2 5E-11 1.7E-15 106.8 8.0 167 2-187 251-430 (458)
29 3l6x_A Catenin delta-1; cateni 99.1 3.7E-11 1.3E-15 110.7 6.5 126 2-187 56-183 (584)
30 2z6h_A Catenin beta-1, beta-ca 99.1 1.4E-10 4.8E-15 106.2 9.4 146 2-187 360-507 (644)
31 2z6g_A B-catenin; FULL-length, 99.1 1.9E-10 6.4E-15 108.4 9.4 146 2-187 496-643 (780)
32 1jdh_A Beta-catenin; beta-cate 98.9 2.2E-09 7.5E-14 94.3 6.5 130 2-187 274-406 (529)
33 2z6h_A Catenin beta-1, beta-ca 98.8 3.9E-09 1.3E-13 96.6 4.9 130 2-187 271-403 (644)
34 3tt9_A Plakophilin-2; cell adh 98.7 6.6E-09 2.2E-13 85.5 4.8 62 2-63 60-122 (233)
35 2z6g_A B-catenin; FULL-length, 98.7 7.2E-09 2.4E-13 97.6 4.4 130 2-187 407-539 (780)
36 3l6x_A Catenin delta-1; cateni 98.6 3.3E-08 1.1E-12 91.0 5.8 77 2-80 403-489 (584)
37 3opb_A SWI5-dependent HO expre 97.9 6.6E-06 2.3E-10 77.8 5.1 123 11-186 576-705 (778)
38 3opb_A SWI5-dependent HO expre 97.9 3.7E-06 1.3E-10 79.5 1.7 74 2-76 614-694 (778)
39 4gmo_A Putative uncharacterize 97.4 4.6E-05 1.6E-09 70.7 2.6 63 3-66 43-106 (684)
40 1te4_A Conserved protein MTH18 97.1 0.00013 4.5E-09 53.1 1.7 23 138-160 107-129 (131)
41 3ltj_A Alpharep-4; protein eng 97.0 0.0037 1.3E-07 47.9 8.7 52 2-64 22-73 (201)
42 1ibr_B P95, importin beta-1 su 96.8 0.00035 1.2E-08 59.5 1.2 64 2-66 374-438 (462)
43 1te4_A Conserved protein MTH18 96.8 0.00032 1.1E-08 51.1 0.8 54 2-66 50-103 (131)
44 4fdd_A Transportin-1; heat rep 96.7 0.00032 1.1E-08 65.7 0.9 64 2-66 367-430 (852)
45 3ltm_A Alpha-REP4; protein eng 96.7 0.0052 1.8E-07 47.4 7.5 52 2-64 58-109 (211)
46 3ltj_A Alpharep-4; protein eng 96.6 0.0044 1.5E-07 47.4 6.7 51 2-63 53-103 (201)
47 2vgl_B AP-2 complex subunit be 96.6 0.00082 2.8E-08 60.9 2.8 63 2-67 129-191 (591)
48 4fdd_A Transportin-1; heat rep 96.5 0.0003 1E-08 65.9 -1.0 65 2-66 408-472 (852)
49 3ltm_A Alpha-REP4; protein eng 96.5 0.0058 2E-07 47.1 6.6 142 2-162 27-170 (211)
50 1oyz_A Hypothetical protein YI 96.2 0.0036 1.2E-07 50.4 4.0 54 3-61 100-153 (280)
51 1qgr_A Protein (importin beta 95.7 0.0079 2.7E-07 55.4 4.4 63 3-66 375-438 (876)
52 1oyz_A Hypothetical protein YI 95.6 0.0038 1.3E-07 50.3 1.6 52 2-64 31-82 (280)
53 2p8q_B Snurportin-1; heat repe 94.9 0.016 5.3E-07 34.6 2.3 38 71-110 3-40 (40)
54 2bpt_A Importin beta-1 subunit 94.4 0.024 8.1E-07 52.1 3.5 62 3-65 378-440 (861)
55 2vgl_B AP-2 complex subunit be 94.2 0.19 6.4E-06 45.3 9.0 62 2-65 247-311 (591)
56 4ady_A RPN2, 26S proteasome re 92.9 0.072 2.5E-06 51.5 4.0 62 2-70 620-681 (963)
57 4gmo_A Putative uncharacterize 92.6 0.08 2.7E-06 48.9 3.8 47 1-47 83-130 (684)
58 1qgr_A Protein (importin beta 92.2 0.017 5.9E-07 53.1 -1.2 62 2-64 416-478 (876)
59 2qk1_A Protein STU2; STU2P, XM 92.0 0.12 4.2E-06 41.7 3.8 75 2-76 154-231 (249)
60 1b3u_A Protein (protein phosph 91.4 0.12 4E-06 45.1 3.3 63 2-64 289-352 (588)
61 2qk2_A LP04448P; mini spindles 88.7 0.54 1.8E-05 36.9 4.9 74 2-76 141-216 (242)
62 1w63_A Adapter-related protein 88.1 0.39 1.3E-05 43.6 4.1 56 3-65 116-171 (618)
63 2bpt_A Importin beta-1 subunit 87.6 0.071 2.4E-06 48.9 -1.2 62 2-64 419-481 (861)
64 1b3u_A Protein (protein phosph 87.5 0.23 7.9E-06 43.2 2.1 56 2-60 449-504 (588)
65 1w63_A Adapter-related protein 86.2 0.079 2.7E-06 48.2 -1.6 61 2-67 150-210 (618)
66 3grl_A General vesicular trans 84.1 0.45 1.5E-05 44.2 2.3 68 2-69 130-199 (651)
67 1wa5_C Importin alpha RE-expor 81.5 0.43 1.5E-05 45.3 1.1 53 7-63 471-523 (960)
68 3grl_A General vesicular trans 80.8 1 3.5E-05 41.8 3.4 47 2-49 174-221 (651)
69 1ibr_B P95, importin beta-1 su 80.2 0.38 1.3E-05 40.4 0.3 62 3-64 226-287 (462)
70 3gjx_B Snurportin-1; transport 75.7 0.72 2.5E-05 39.8 0.7 43 67-111 28-70 (365)
71 2qk1_A Protein STU2; STU2P, XM 67.0 1.6 5.5E-05 34.9 0.9 167 3-185 25-198 (249)
72 2vgl_A Adaptor protein complex 64.2 4.6 0.00016 36.7 3.4 53 3-62 120-174 (621)
73 2qk2_A LP04448P; mini spindles 62.2 2.4 8.4E-05 33.0 1.1 58 5-63 68-125 (242)
74 3tjz_B Coatomer subunit gamma; 56.6 6.9 0.00024 33.4 3.0 52 3-61 113-164 (355)
75 2x19_B Importin-13; nuclear tr 55.0 6.4 0.00022 36.8 2.7 55 6-64 501-555 (963)
76 4ady_A RPN2, 26S proteasome re 50.1 6.7 0.00023 38.0 2.0 32 37-68 612-644 (963)
77 1u6g_C TIP120 protein, CAND1; 45.6 9.2 0.00031 36.9 2.3 65 2-67 973-1037(1230)
78 2vgl_A Adaptor protein complex 44.0 4.2 0.00014 36.9 -0.4 59 4-65 158-216 (621)
79 4hat_C Exportin-1; heat repeat 43.7 7.8 0.00027 37.5 1.4 56 9-64 468-528 (1023)
80 3m1i_C Exportin-1; heat repeat 35.1 7.2 0.00024 37.3 -0.3 57 7-65 513-569 (1049)
81 1nzn_A CGI-135 protein, fissio 33.6 37 0.0013 24.6 3.4 52 5-63 32-83 (126)
82 1u6g_C TIP120 protein, CAND1; 32.4 15 0.0005 35.5 1.3 62 3-64 15-76 (1230)
83 1lrv_A LRV, leucine-rich repea 32.1 45 0.0015 26.6 4.0 24 38-61 196-219 (244)
84 2x1g_F Cadmus; transport prote 29.6 8.4 0.00029 36.2 -0.9 52 6-65 518-572 (971)
85 4ffb_C Protein STU2; tubulin f 28.5 32 0.0011 27.2 2.5 57 3-60 148-207 (278)
86 1v54_M VIIIB, IX, cytochrome C 27.1 21 0.00072 21.5 0.9 13 10-22 26-38 (46)
87 2db0_A 253AA long hypothetical 26.9 50 0.0017 26.4 3.3 62 2-68 152-213 (253)
88 3b2a_A TON_1937, putative unch 25.4 1.4E+02 0.0048 24.4 5.8 62 2-63 41-102 (265)
89 1ho8_A Vacuolar ATP synthase s 25.0 37 0.0013 30.2 2.5 54 7-60 418-471 (480)
90 2x19_B Importin-13; nuclear tr 23.9 42 0.0014 31.2 2.8 54 7-65 462-518 (963)
91 3tjz_B Coatomer subunit gamma; 22.8 94 0.0032 26.3 4.6 55 2-61 147-201 (355)
92 2x1g_F Cadmus; transport prote 22.4 45 0.0015 31.2 2.7 50 9-63 479-533 (971)
No 1
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.96 E-value=1.3e-30 Score=235.03 Aligned_cols=122 Identities=39% Similarity=0.615 Sum_probs=64.3
Q ss_pred hhhhhHhhhhhhccCCChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHh
Q psy10739 65 KVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGM 144 (187)
Q Consensus 65 ~~~~~~R~~~fKn~g~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l 144 (187)
.+.|++|++.|||+|+|.+|+||||+|..|||||+||||+|+||||+....++..++.. +...........+++|++++
T Consensus 7 ~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~lv~~l 85 (529)
T 3tpo_A 7 ANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQ-ENRNNQGTVNWSVEDIVKGI 85 (529)
T ss_dssp -------------------------------------CCSCSCCCCCC----------------CGGGSSCCHHHHHHHH
T ss_pred CCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhh-hccchhhhHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999999999999998654444333332 22222334457899999999
Q ss_pred cCCCHHHHHHHHHHHHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 145 KSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 145 ~S~d~~~ql~a~~~~RklLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
+|+|++.|+.|++++||+||.++||||+.||++|+||+||+||
T Consensus 86 ~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL 128 (529)
T 3tpo_A 86 NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFL 128 (529)
T ss_dssp TSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999875
No 2
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.81 E-value=3.6e-21 Score=171.60 Aligned_cols=118 Identities=31% Similarity=0.447 Sum_probs=59.0
Q ss_pred hhhhHhhhhhhccCCChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhc
Q psy10739 66 VAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMK 145 (187)
Q Consensus 66 ~~~~~R~~~fKn~g~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~ 145 (187)
..++.|++.||+ ++|.+++||||+++.|||||+||||+|+||||+....++..++ . ...........++.+++.+.
T Consensus 9 ~~~~~~~~~~k~-~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~-~--~~~~~~~~~~~l~~lv~~L~ 84 (528)
T 4b8j_A 9 ERVEVRRNRYKV-AVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPA-S--AATGVDKKLESLPAMIGGVY 84 (528)
T ss_dssp -------------------CCCCC-----------------CCCC-------------------------CHHHHHHHHT
T ss_pred CChHHHHHhhcc-cCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCccccccc-c--cccchhhhHHHHHHHHHHHc
Confidence 356889999998 6899999999999999999999999999999974321111111 0 00111223468999999999
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 146 SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 146 S~d~~~ql~a~~~~RklLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
|+|++.++.|++.+|+++|.+.+||++.++++|+||.||++|
T Consensus 85 s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL 126 (528)
T 4b8j_A 85 SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFL 126 (528)
T ss_dssp SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHh
Confidence 999999999999999999999999999999999999999875
No 3
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.80 E-value=2.5e-21 Score=173.18 Aligned_cols=128 Identities=35% Similarity=0.468 Sum_probs=85.8
Q ss_pred ccccchhhhhHhhhhhhccC-CChHHHhhhhhhHHHHHHhhchhhHHhhhhccccc--cchhhhhhccc-CCCCCC--Cc
Q psy10739 60 TKMSQKVAAIDRKASFKNAG-KSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQL--DEIEEENVTVI-EPTCMS--PI 133 (187)
Q Consensus 60 l~~~t~~~~~~R~~~fKn~g-~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~--~~~~~s~~~~~-~~~~~~--~~ 133 (187)
.+|++...++.|++.|||+| +|.+++||||++.+|||||+|||++|+||||+... .++..++.... ...... ..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (530)
T 1wa5_B 6 DSSTSKFVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQL 85 (530)
T ss_dssp ------CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC---------------------------
T ss_pred ccCCCCCchHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhh
Confidence 47887778899999999999 99999999999999999999999999999998531 01111110000 000111 23
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 134 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 134 ~~~l~~iv~~l~S~d~~~ql~a~~~~RklLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
...++.+++.++|+|++.+..|++.+|+++|.+.+|+++.++++|+||.||++|
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L 139 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM 139 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHh
Confidence 467999999999999999999999999999999999999999999999999886
No 4
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.67 E-value=1.5e-17 Score=149.41 Aligned_cols=171 Identities=18% Similarity=0.240 Sum_probs=119.4
Q ss_pred CCCC-CCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCC
Q psy10739 2 LLSS-SRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGK 80 (187)
Q Consensus 2 lL~~-~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~ 80 (187)
||.+ +.+.++.||+|+|+|||+|++++.++|+++|.+|.|+.+|.+++.++|..|+|+|++.+.+.++.|.......+.
T Consensus 108 lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i 187 (510)
T 3ul1_B 108 FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAI 187 (510)
T ss_dssp HTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCH
T ss_pred HHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCh
Confidence 5654 457899999999999999999999999999999999999999999999999999999988888777776664222
Q ss_pred ChHHHhhhhhhHHHHHHhhchhh--HHhhhhccccccchhhhhhcccCCCCCC--CccCCHHHHHHHhcCCCHHHHHHHH
Q psy10739 81 SFDEMRRKRCEMNVELRKAHKDD--QLFKRRNIDQLDEIEEENVTVIEPTCMS--PIKMTVPEMIEGMKSSNPKMRMIAT 156 (187)
Q Consensus 81 d~~e~RrrR~e~~veLRK~kree--~l~KrRn~~~~~~~~~s~~~~~~~~~~~--~~~~~l~~iv~~l~S~d~~~ql~a~ 156 (187)
+..+.+-+....+ ...-.|+..+ ..+.......+... .....+|.++..+.++|++.+..|+
T Consensus 188 ----------~~Ll~lL~~~~~~~~~~~~~~~a~~----~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~ 253 (510)
T 3ul1_B 188 ----------DPLLALLAVPDLSTLACGYLRNLTW----TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 253 (510)
T ss_dssp ----------HHHHHHTCSSCGGGSCHHHHHHHHH----HHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred ----------HHHHHHHHhccchhhhHHHHHHHHH----HHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHH
Confidence 1122222111111 0111233221 01111100000000 0124578899999999999999999
Q ss_pred HHHHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 157 RSARKMLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 157 ~~~RklLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
++++.+ +...+.-++.|+++|++|+||++|
T Consensus 254 ~aL~~L-~~~~~~~~~~i~~~g~i~~Lv~lL 283 (510)
T 3ul1_B 254 WAISYL-TDGPNERIEMVVKKGVVPQLVKLL 283 (510)
T ss_dssp HHHHHH-TSSCHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHH-hhchhhhHHHHHhcccchhhhhhh
Confidence 999665 555566788899999999999864
No 5
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.63 E-value=2.6e-16 Score=133.72 Aligned_cols=129 Identities=14% Similarity=0.133 Sum_probs=106.0
Q ss_pred CCCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcC-ChhhhhhhhccccccchhhhhHhhhhhhccC
Q psy10739 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG-DAKVQKEAAINTKMSQKVAAIDRKASFKNAG 79 (187)
Q Consensus 1 ~lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~-~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g 79 (187)
+||.|+++.++..|+|+|+||+.+++..-+.+++.|.+|+|+.+|.+. +..+|+.|+||+++.+.+.+....
T Consensus 89 ~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~------- 161 (296)
T 1xqr_A 89 RYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLL------- 161 (296)
T ss_dssp TTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHH-------
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHH-------
Confidence 489999999999999999999999999999999999999999999964 889999999999988543221000
Q ss_pred CChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHH
Q psy10739 80 KSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSA 159 (187)
Q Consensus 80 ~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~ 159 (187)
.+.. ...++.++..+.++|+..+.+|+|++
T Consensus 162 ------------------------~~~~--------------------------~ggi~~L~~lL~~~d~~v~~~A~~aL 191 (296)
T 1xqr_A 162 ------------------------QFLR--------------------------LDGFSVLMRAMQQQVQKLKVKSAFLL 191 (296)
T ss_dssp ------------------------HHHH--------------------------TTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred ------------------------HHHH--------------------------CCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 0110 01367888899999999999999999
Q ss_pred HhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 160 RKMLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 160 RklLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
..+.+. .+..++.++++|+||.||.+|
T Consensus 192 s~L~~~-~~~~~~~vv~~g~i~~Lv~LL 218 (296)
T 1xqr_A 192 QNLLVG-HPEHKGTLCSMGMVQQLVALV 218 (296)
T ss_dssp HHHHHH-CGGGHHHHHHTTHHHHHHHHH
T ss_pred HHHHhC-ChHHHHHHHHcCCHHHHHHHH
Confidence 777654 556789999999999999875
No 6
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.63 E-value=7.5e-17 Score=145.10 Aligned_cols=168 Identities=17% Similarity=0.238 Sum_probs=118.1
Q ss_pred CCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCChHH
Q psy10739 5 SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKSFDE 84 (187)
Q Consensus 5 ~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d~~e 84 (187)
++.+.++.+|+|+|+|||.|++++.+.|+++|.+|.|+.+|.+++.+++..|+|||++.+.+.++.|.......+.
T Consensus 131 ~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i---- 206 (529)
T 3tpo_A 131 TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAI---- 206 (529)
T ss_dssp TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCH----
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCc----
Confidence 4568899999999999999999999999999999999999999999999999999999988888788776664322
Q ss_pred HhhhhhhHHHHHHhhchhh--HHhhhhccccccchhhhhhcccCCCCC--CCccCCHHHHHHHhcCCCHHHHHHHHHHHH
Q psy10739 85 MRRKRCEMNVELRKAHKDD--QLFKRRNIDQLDEIEEENVTVIEPTCM--SPIKMTVPEMIEGMKSSNPKMRMIATRSAR 160 (187)
Q Consensus 85 ~RrrR~e~~veLRK~kree--~l~KrRn~~~~~~~~~s~~~~~~~~~~--~~~~~~l~~iv~~l~S~d~~~ql~a~~~~R 160 (187)
+..+.+-+....+ ...-.|+..+. .+.......+.. ......+|.++..+.++|++.+..|+|+++
T Consensus 207 ------~~Ll~lL~~~~~~~~~~~~~~~a~~~----L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~ 276 (529)
T 3tpo_A 207 ------DPLLALLAVPDLSTLACGYLRNLTWT----LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 276 (529)
T ss_dssp ------HHHHHTTCSSCGGGSCHHHHHHHHHH----HHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred ------HHHHHHHhccchhHhHHHHHHHHHHH----HHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 1122221111000 01112332211 111110000000 001245788999999999999999999996
Q ss_pred hhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 161 KMLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 161 klLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
.+ +...+.-++.|+++|++|+||++|
T Consensus 277 ~l-~~~~~~~~~~v~~~g~i~~Lv~lL 302 (529)
T 3tpo_A 277 YL-TDGPNERIEMVVKKGVVPQLVKLL 302 (529)
T ss_dssp HH-HSSCHHHHHHHHTTTCHHHHHHHH
T ss_pred Hh-hhhhhhhHHHHHhccchHHHHHHh
Confidence 65 455566788899999999999874
No 7
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.60 E-value=3.8e-16 Score=140.21 Aligned_cols=95 Identities=25% Similarity=0.386 Sum_probs=54.4
Q ss_pred hhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHhhhcCCCCC
Q psy10739 90 CEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHP 169 (187)
Q Consensus 90 ~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~RklLS~e~nP 169 (187)
..-.+|+|+++.+.+..++++... ++++.+.. +..+.+...++++++||++++|+|++.|++||++|||+||+|+||
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~p 91 (510)
T 3ul1_B 15 GSGMLETAAALFERNHMDSPDLGT-DDDDLAMA--DIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQP 91 (510)
T ss_dssp -----------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCC
T ss_pred CcccHHHHHHHHHhhccCCccccC-Cccccchh--hhccccchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCc
Confidence 344678888888888887776543 12221111 112334455789999999999999999999999999999999999
Q ss_pred cHHHHHHcCCcccccccC
Q psy10739 170 PIDELIEAGVVPICVFQR 187 (187)
Q Consensus 170 PId~VI~aGvVP~~V~~~ 187 (187)
|||+||++|+||+||+||
T Consensus 92 pi~~ii~~G~ip~LV~lL 109 (510)
T 3ul1_B 92 PIDNIIRAGLIPKFVSFL 109 (510)
T ss_dssp CHHHHHHTTHHHHHHHHT
T ss_pred hHHHHHHCCCHHHHHHHH
Confidence 999999999999999986
No 8
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.54 E-value=9.3e-15 Score=114.73 Aligned_cols=128 Identities=22% Similarity=0.300 Sum_probs=105.4
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCC
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKS 81 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d 81 (187)
||.|++..++.+|||+|+|++.++.+..+.++++|++|.|+.+|.+++..+|..|+|++++.+.+.++.+.
T Consensus 20 LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~--------- 90 (210)
T 4db6_A 20 QLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ--------- 90 (210)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH---------
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH---------
Confidence 78999999999999999999999999999999999999999999999999999999999888433221111
Q ss_pred hHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy10739 82 FDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARK 161 (187)
Q Consensus 82 ~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~Rk 161 (187)
.+.+ ...++.++..+.+.|+..+..|++.+..
T Consensus 91 ----------------------~i~~--------------------------~g~i~~L~~lL~~~~~~v~~~a~~~L~~ 122 (210)
T 4db6_A 91 ----------------------AVID--------------------------AGALPALVQLLSSPNEQILQEALWALSN 122 (210)
T ss_dssp ----------------------HHHH--------------------------TTCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ----------------------HHHH--------------------------CCCHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 0110 0247889999999999999999999987
Q ss_pred hhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 162 MLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 162 lLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
+.. .....++.++++|++|.|+++|
T Consensus 123 l~~-~~~~~~~~~~~~~~i~~L~~ll 147 (210)
T 4db6_A 123 IAS-GGNEQIQAVIDAGALPALVQLL 147 (210)
T ss_dssp HTT-SCHHHHHHHHHTTHHHHHHHHT
T ss_pred HHc-CCHHHHHHHHHcCcHHHHHHHH
Confidence 754 3344567888999999999875
No 9
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.49 E-value=4.6e-14 Score=110.72 Aligned_cols=128 Identities=24% Similarity=0.336 Sum_probs=104.0
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCC
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKS 81 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d 81 (187)
+|.+++..++..|+|+|+||+.|+.++.+.+++.|.+|.|+.+|.+++..+|++|+|++++.+...++.+.
T Consensus 62 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~--------- 132 (210)
T 4db6_A 62 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ--------- 132 (210)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH---------
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHH---------
Confidence 67888999999999999999999999999999999999999999999999999999999888433211000
Q ss_pred hHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy10739 82 FDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARK 161 (187)
Q Consensus 82 ~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~Rk 161 (187)
.+.. ...++.++..+.++|+..+..|++.+..
T Consensus 133 ----------------------~~~~--------------------------~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 164 (210)
T 4db6_A 133 ----------------------AVID--------------------------AGALPALVQLLSSPNEQILQEALWALSN 164 (210)
T ss_dssp ----------------------HHHH--------------------------TTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ----------------------HHHH--------------------------cCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 0110 0136789999999999999999999988
Q ss_pred hhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 162 MLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 162 lLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
+.+. ..+..+.+++.|++|.++++|
T Consensus 165 l~~~-~~~~~~~~~~~g~i~~L~~ll 189 (210)
T 4db6_A 165 IASG-GNEQKQAVKEAGALEKLEQLQ 189 (210)
T ss_dssp HHTS-CHHHHHHHHHTTHHHHHHHGG
T ss_pred HHcC-CcHHHHHHHHCCCHHHHHHHH
Confidence 8753 234456678999999998874
No 10
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.39 E-value=1.2e-13 Score=122.85 Aligned_cols=169 Identities=21% Similarity=0.263 Sum_probs=117.5
Q ss_pred CCCCCC-cchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCC
Q psy10739 2 LLSSSR-VNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGK 80 (187)
Q Consensus 2 lL~~~~-~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~ 80 (187)
+|.+++ ..++.+|+|+|+||+.|+.++.+.++++|++|.|+.+|.+++..+|..|+|++++.+.+.+..|...... |.
T Consensus 125 lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~-g~ 203 (528)
T 4b8j_A 125 FLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLAN-GA 203 (528)
T ss_dssp HHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHT-TC
T ss_pred HhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHC-Cc
Confidence 466766 8999999999999999999999999999999999999999999999999999999977766666655442 21
Q ss_pred ChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccC-CCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHH
Q psy10739 81 SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIE-PTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSA 159 (187)
Q Consensus 81 d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~-~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~ 159 (187)
. ...+++=+...+..+ +++..+ ....+.... ..........++.++..+.++|++.+..|++.+
T Consensus 204 -l--------~~Ll~lL~~~~~~~v--~~~a~~----~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL 268 (528)
T 4b8j_A 204 -L--------LPLLAQLNEHTKLSM--LRNATW----TLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWAL 268 (528)
T ss_dssp -H--------HHHHHTCCTTCCHHH--HHHHHH----HHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred -H--------HHHHHHHhcCCCHHH--HHHHHH----HHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 0 111111111111111 122111 001111000 000001135689999999999999999999999
Q ss_pred HhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 160 RKMLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 160 RklLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
..+ +...+..++.++++|+||.|+.+|
T Consensus 269 ~~l-~~~~~~~~~~~~~~g~v~~Lv~lL 295 (528)
T 4b8j_A 269 SYL-SDGTNDKIQAVIEAGVCPRLVELL 295 (528)
T ss_dssp HHH-TSSCHHHHHHHHHTTCHHHHHHHT
T ss_pred HHH-HcCCHHHHHHHHHcCHHHHHHHHH
Confidence 665 555566688999999999999875
No 11
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.38 E-value=7.5e-13 Score=106.36 Aligned_cols=128 Identities=27% Similarity=0.410 Sum_probs=103.2
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCC
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKS 81 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d 81 (187)
+|.+++..++.+|+|+|+|++.|+.+..+.+++.|.+|.|+.+|.+++..+|..|+|++++.+...+ .+.
T Consensus 62 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~--------- 131 (252)
T 4db8_A 62 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-EQI--------- 131 (252)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-HHH---------
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc-hHH---------
Confidence 6788889999999999999999999999999999999999999999999999999999988833211 110
Q ss_pred hHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy10739 82 FDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARK 161 (187)
Q Consensus 82 ~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~Rk 161 (187)
+.+.+ ...++.++..+.++|+..+..|++.+..
T Consensus 132 ---------------------~~~~~--------------------------~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 164 (252)
T 4db8_A 132 ---------------------QAVID--------------------------AGALPALVQLLSSPNEQILQEALWALSN 164 (252)
T ss_dssp ---------------------HHHHH--------------------------TTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred ---------------------HHHHH--------------------------CCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 00110 0136788899999999999999999977
Q ss_pred hhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 162 MLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 162 lLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
+.+ ......+.+++.|++|.|+++|
T Consensus 165 l~~-~~~~~~~~~~~~~~i~~L~~ll 189 (252)
T 4db8_A 165 IAS-GGNEQIQAVIDAGALPALVQLL 189 (252)
T ss_dssp HTT-SCHHHHHHHHHTTCHHHHHHGG
T ss_pred HHc-CChHHHHHHHHCCCHHHHHHHH
Confidence 754 3344566788999999999875
No 12
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.37 E-value=3.1e-13 Score=114.76 Aligned_cols=65 Identities=11% Similarity=0.086 Sum_probs=59.6
Q ss_pred CCCC-CCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchh
Q psy10739 2 LLSS-SRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKV 66 (187)
Q Consensus 2 lL~~-~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~ 66 (187)
||.+ ++..++++|+|+||||++|+..+++.++++|.+|.|+.+|.++++++|++|||++++.+..
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 4554 4788999999999999999999999999999999999999999999999999999998554
No 13
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.37 E-value=1.2e-12 Score=105.10 Aligned_cols=128 Identities=24% Similarity=0.335 Sum_probs=104.1
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCC
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKS 81 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d 81 (187)
||.+++..++..|+|+|+||+.+...+++.+++.|++|.|+.+|.+++..++.+|+|++++.+...++.+
T Consensus 104 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~---------- 173 (252)
T 4db8_A 104 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI---------- 173 (252)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH----------
T ss_pred HHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH----------
Confidence 6788899999999999999999999998999999999999999999999999999999988843321100
Q ss_pred hHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy10739 82 FDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARK 161 (187)
Q Consensus 82 ~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~Rk 161 (187)
+.+.. ...++.++..+.+.|+..+..|++.+..
T Consensus 174 ---------------------~~~~~--------------------------~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 206 (252)
T 4db8_A 174 ---------------------QAVID--------------------------AGALPALVQLLSSPNEQILQEALWALSN 206 (252)
T ss_dssp ---------------------HHHHH--------------------------TTCHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred ---------------------HHHHH--------------------------CCCHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 00110 0247889999999999999999999988
Q ss_pred hhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 162 MLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 162 lLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
+.+ ......+.+++.|++|.|+++|
T Consensus 207 l~~-~~~~~~~~~~~~g~i~~L~~ll 231 (252)
T 4db8_A 207 IAS-GGNEQKQAVKEAGALEKLEQLQ 231 (252)
T ss_dssp HTT-SCHHHHHHHHHTTHHHHHHTTT
T ss_pred Hhc-CCHHHHHHHHHCCcHHHHHHHh
Confidence 764 2334566788999999999875
No 14
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.37 E-value=2.8e-13 Score=128.75 Aligned_cols=129 Identities=10% Similarity=0.065 Sum_probs=104.3
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCC
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKS 81 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d 81 (187)
||.|++..+++.|+|+|+||+.|+..+.+.+.++|.+|.|+.+|.+.+..+|++|||+++|.+.+.+......+.+.
T Consensus 631 LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~--- 707 (810)
T 3now_A 631 YLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIA--- 707 (810)
T ss_dssp HHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTST---
T ss_pred HHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHc---
Confidence 56788999999999999999999887776663489999999999999999999999999999665321111111100
Q ss_pred hHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy10739 82 FDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARK 161 (187)
Q Consensus 82 ~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~Rk 161 (187)
..++.++..+.++|++.+..|+|++..
T Consensus 708 -----------------------------------------------------g~I~~Lv~LL~s~d~~vq~~A~~aL~N 734 (810)
T 3now_A 708 -----------------------------------------------------SWLDILHTLIANPSPAVQHRGIVIILN 734 (810)
T ss_dssp -----------------------------------------------------THHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------CCHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 126788899999999999999999999
Q ss_pred hhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 162 MLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 162 lLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
+++.. ...+..++++|++|.|+.+|
T Consensus 735 L~~~s-~e~~~~l~e~G~i~~L~~LL 759 (810)
T 3now_A 735 MINAG-EEIAKKLFETDIMELLSGLG 759 (810)
T ss_dssp HHTTC-HHHHHHHHTSTHHHHHTTSC
T ss_pred HHhCC-HHHHHHHHHCCCHHHHHHHH
Confidence 98743 34678899999999999875
No 15
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.34 E-value=1.2e-12 Score=116.82 Aligned_cols=168 Identities=16% Similarity=0.182 Sum_probs=116.8
Q ss_pred CCCCC-CcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCC
Q psy10739 2 LLSSS-RVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGK 80 (187)
Q Consensus 2 lL~~~-~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~ 80 (187)
+|.++ +..++.+|+|+|+||+.|+.++.+.+++.|++|.|+.+|.+.+..+|..|+|++++.+.+.++.|...+.. |.
T Consensus 138 ~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~-~~ 216 (530)
T 1wa5_B 138 FMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQC-NA 216 (530)
T ss_dssp TTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred HhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHc-Cc
Confidence 57776 78999999999999999999999999999999999999999999999999999999877766666554543 32
Q ss_pred ChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccC--CCCCCCccCCHHHHHHHhcCCCHHHHHHHHHH
Q psy10739 81 SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIE--PTCMSPIKMTVPEMIEGMKSSNPKMRMIATRS 158 (187)
Q Consensus 81 d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~--~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~ 158 (187)
.. ..+++=+. .+..+ +++..+ ..+.+.... ..........++.++..+.++|+..+..|++.
T Consensus 217 -l~--------~L~~ll~~-~~~~v--~~~a~~----~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~ 280 (530)
T 1wa5_B 217 -ME--------PILGLFNS-NKPSL--IRTATW----TLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWA 280 (530)
T ss_dssp -HH--------HHHHGGGS-CCHHH--HHHHHH----HHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHH
T ss_pred -HH--------HHHHHhcc-CCHHH--HHHHHH----HHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11 12222111 11111 111110 001111000 00000112568999999999999999999999
Q ss_pred HHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 159 ARKMLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 159 ~RklLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
+..+. ....+.++.+++.|++|.|+++|
T Consensus 281 L~~L~-~~~~~~~~~~~~~~~v~~Lv~lL 308 (530)
T 1wa5_B 281 ISYLS-DGPQEAIQAVIDVRIPKRLVELL 308 (530)
T ss_dssp HHHHH-SSCHHHHHHHHHTTCHHHHHHGG
T ss_pred HHHHh-CCCHHHHHHHHhcCcHHHHHHHH
Confidence 96664 44445688899999999999875
No 16
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.30 E-value=4.3e-13 Score=127.44 Aligned_cols=167 Identities=10% Similarity=0.053 Sum_probs=111.7
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhh--------------------------------HHHHHHcCChHHHHHHhhcCC
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQ--------------------------------IDHVIQEGLLPYIVNILENGD 49 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~q--------------------------------iq~vi~~~~~p~l~~~l~~~~ 49 (187)
||.+++..++.+|.|+|+||+.|+..| ++.|+++|++|.|+.+|.+++
T Consensus 429 LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s 508 (810)
T 3now_A 429 LARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTES 508 (810)
T ss_dssp HHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCC
T ss_pred HhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCC
Confidence 567888999999999999999987422 589999999999999999999
Q ss_pred hhhhhhhhccccccchhhhhHhhhhhhccCCChHHHhhhhhhHHHHHHhhchhhHHhhhhccccc----cchhhhhhccc
Q psy10739 50 AKVQKEAAINTKMSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQL----DEIEEENVTVI 125 (187)
Q Consensus 50 ~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~----~~~~~s~~~~~ 125 (187)
..+|++|+|++++.+.+ ++.|....+. |.= ...+.|-+....+ . +++..+. .....+...
T Consensus 509 ~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~-Gai---------p~Lv~LL~s~~~~--~-k~~Aa~AL~nL~~~~~p~~~-- 572 (810)
T 3now_A 509 HNSQELIARVLNAVCGL-KELRGKVVQE-GGV---------KALLRMALEGTEK--G-KRHATQALARIGITINPEVS-- 572 (810)
T ss_dssp HHHHHHHHHHHHHHHTS-HHHHHHHHHT-THH---------HHHHHHHHSSCHH--H-HHHHHHHHHHHHHHSCHHHH--
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHC-CCH---------HHHHHHHccCCHH--H-HHHHHHHHHHHhcCCChhhh--
Confidence 99999999999999654 4577766653 421 1223332221111 1 1222110 000000000
Q ss_pred CCCCCCCccCCHHHHHHHhcCC-CHHHHHHHHHHHHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 126 EPTCMSPIKMTVPEMIEGMKSS-NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 126 ~~~~~~~~~~~l~~iv~~l~S~-d~~~ql~a~~~~RklLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
.........+|.++..+.++ +...+++|+++++.|.+. .+.-.+.||++|.+|+|++||
T Consensus 573 --~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~-~d~~~~~Ii~aG~l~~Lv~LL 632 (810)
T 3now_A 573 --FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM-NESVRQRIIKEQGVSKIEYYL 632 (810)
T ss_dssp --TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHH
T ss_pred --hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHH
Confidence 00000123689999999876 455668999999887654 233467899999999999874
No 17
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.29 E-value=3.3e-12 Score=101.59 Aligned_cols=128 Identities=25% Similarity=0.298 Sum_probs=102.8
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCC
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKS 81 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d 81 (187)
+|.+++..++.+|+|+|.|++.+..+..+.+++.|++|.|+.+|.+++..++..|+|++++.+...++.+...++.
T Consensus 10 ~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---- 85 (252)
T 4hxt_A 10 LLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA---- 85 (252)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT----
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC----
Confidence 5788889999999999999999999999999999999999999999999999999999988844422222111110
Q ss_pred hHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy10739 82 FDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARK 161 (187)
Q Consensus 82 ~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~Rk 161 (187)
..++.++..+.++|++.+..|++.+..
T Consensus 86 -----------------------------------------------------~~i~~l~~ll~~~~~~v~~~a~~~L~~ 112 (252)
T 4hxt_A 86 -----------------------------------------------------GGVEVLVKLLTSTDSEVQKEAARALAN 112 (252)
T ss_dssp -----------------------------------------------------THHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------CCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 125678888889999999999999977
Q ss_pred hhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 162 MLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 162 lLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
+.. ......+.+++.|++|.++++|
T Consensus 113 l~~-~~~~~~~~~~~~~~i~~L~~~l 137 (252)
T 4hxt_A 113 IAS-GPDEAIKAIVDAGGVEVLVKLL 137 (252)
T ss_dssp HTT-SCHHHHHHHHHTTHHHHHHHHT
T ss_pred HHc-CCHHHHHHHHHCCCHHHHHHHH
Confidence 653 3334556678899999998875
No 18
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.29 E-value=3.1e-12 Score=110.16 Aligned_cols=169 Identities=20% Similarity=0.167 Sum_probs=116.2
Q ss_pred CCCCC-CcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCC
Q psy10739 2 LLSSS-RVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGK 80 (187)
Q Consensus 2 lL~~~-~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~ 80 (187)
+|.++ +..++.+|+|+++||+.|+.++.+.+++.|++|.|+.+|.+++..+|..|+|++++...+.++.|...+...+.
T Consensus 72 ~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i 151 (450)
T 2jdq_A 72 FLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNIL 151 (450)
T ss_dssp HHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCH
T ss_pred HHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCH
Confidence 45666 78999999999999999999999999999999999999999999999999999988877666666555442221
Q ss_pred ChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhccc--CCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHH
Q psy10739 81 SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVI--EPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRS 158 (187)
Q Consensus 81 d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~--~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~ 158 (187)
+..+++-+...+..+ |++..+. ....... ...........++.++..+.++|+..+..|++.
T Consensus 152 ----------~~L~~~l~~~~~~~v--~~~a~~~----L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~ 215 (450)
T 2jdq_A 152 ----------PPLLQLFSKQNRLTM--TRNAVWA----LSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWA 215 (450)
T ss_dssp ----------HHHHHHTTSCCCHHH--HHHHHHH----HHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHH
T ss_pred ----------HHHHHHhcCCCCHHH--HHHHHHH----HHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 112222111011111 1111100 0000000 000011123568999999999999999999999
Q ss_pred HHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 159 ARKMLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 159 ~RklLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
++.+. ...++.++.+++.|++|.|+.+|
T Consensus 216 L~~l~-~~~~~~~~~~~~~~~i~~L~~ll 243 (450)
T 2jdq_A 216 LSYLS-DGPNDKIQAVIDAGVCRRLVELL 243 (450)
T ss_dssp HHHHT-SSSHHHHHHHHHTTTHHHHHHHT
T ss_pred HHHHH-CCCcHHHHHHHHcCcHHHHHHHH
Confidence 97664 44456678888999999999875
No 19
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.28 E-value=1.6e-12 Score=115.32 Aligned_cols=141 Identities=13% Similarity=0.062 Sum_probs=96.7
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhh-cCChhhhhhhhccccccchhhhhHhhhhhhccCC
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILE-NGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGK 80 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~-~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~ 80 (187)
||.++++.++.+|+|+|.||+.++++..+.++++|.+|.|+++|. +++.+++++|+|+|.+.+.. ++.|..... .+.
T Consensus 52 lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i 129 (457)
T 1xm9_A 52 LLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DAL 129 (457)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccH
Confidence 688999999999999999999999999999999999999999999 88999999999999888555 333332222 110
Q ss_pred ChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHH
Q psy10739 81 SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSAR 160 (187)
Q Consensus 81 d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~R 160 (187)
...+++ +.. +.+... .+ . .++. -...|++.+..|+|.++
T Consensus 130 ----------~~Lv~l---------l~~---------~~s~~~----~~-~-----~~~~---~e~~~~~v~~~a~~aL~ 168 (457)
T 1xm9_A 130 ----------PVLADR---------VII---------PFSGWC----DG-N-----SNMS---REVVDPEVFFNATGCLR 168 (457)
T ss_dssp ----------HHHHHH---------TTH---------HHHTCC----------------------CCCHHHHHHHHHHHH
T ss_pred ----------HHHHHH---------Hhc---------cccccc----cC-c-----cchh---cccccHHHHHHHHHHHH
Confidence 111111 100 000000 00 0 0000 00257888899999997
Q ss_pred hhhcCCCCCcHHHHHHc-CCcccccccC
Q psy10739 161 KMLSKERHPPIDELIEA-GVVPICVFQR 187 (187)
Q Consensus 161 klLS~e~nPPId~VI~a-GvVP~~V~~~ 187 (187)
.+-+ . ....+.|+++ |+||.||.+|
T Consensus 169 nLs~-~-~~~~~~i~~~~g~i~~Lv~lL 194 (457)
T 1xm9_A 169 NLSS-A-DAGRQTMRNYSGLIDSLMAYV 194 (457)
T ss_dssp HHTT-S-HHHHHHHTTSTTHHHHHHHHH
T ss_pred HHcc-C-HHHHHHHHHcCCCHHHHHHHH
Confidence 7654 3 4567778888 9999998764
No 20
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.28 E-value=7.6e-12 Score=108.54 Aligned_cols=167 Identities=11% Similarity=0.033 Sum_probs=112.3
Q ss_pred CCCCCCcchhHHHHHHHHHhcCC-ChhhHHHHHHcCChHHHHHHh-hcCChhhhhhhhccccccchhhhhHhhhhhhccC
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAG-NSRQIDHVIQEGLLPYIVNIL-ENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAG 79 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG-~~~qiq~vi~~~~~p~l~~~l-~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g 79 (187)
||.+++..++..|||+|+|++.| +.+..+.|+++|.+|+|+++| .+++..+++.|++++.+.+...++.+.......|
T Consensus 135 LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~G 214 (354)
T 3nmw_A 135 QLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDG 214 (354)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTT
T ss_pred HHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcC
Confidence 78899999999999999999987 556778888999999999975 6678999999999987665533333433332223
Q ss_pred CChHHHhhhhhhHHHHHHhhchh--------hHHhhhhcccc---ccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCC
Q psy10739 80 KSFDEMRRKRCEMNVELRKAHKD--------DQLFKRRNIDQ---LDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSN 148 (187)
Q Consensus 80 ~d~~e~RrrR~e~~veLRK~kre--------e~l~KrRn~~~---~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d 148 (187)
. ....|++-+...+ +...--||+.. ..++...... ....++.+++.+.+++
T Consensus 215 a---------i~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~---------~~g~i~~Lv~lL~~~~ 276 (354)
T 3nmw_A 215 A---------LAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR---------ENNCLQTLLQHLKSHS 276 (354)
T ss_dssp H---------HHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH---------TTTHHHHHHHHTTCSC
T ss_pred c---------HHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHH---------HcCCHHHHHHHHcCCC
Confidence 1 1223333222111 11111233321 0011000000 0135899999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 149 PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 149 ~~~ql~a~~~~RklLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
...+.+|++.++.+- ......++.++++|+||.||++|
T Consensus 277 ~~v~~~A~~aL~nLa-~~~~~~~~~i~~~G~i~~Lv~LL 314 (354)
T 3nmw_A 277 LTIVSNACGTLWNLS-ARNPKDQEALWDMGAVSMLKNLI 314 (354)
T ss_dssp HHHHHHHHHHHHHHT-SSCHHHHHHHHHTTHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHh-CCCHHHHHHHHHCCCHHHHHHHH
Confidence 999999999998774 33445688899999999999986
No 21
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.27 E-value=6e-12 Score=103.71 Aligned_cols=126 Identities=13% Similarity=0.074 Sum_probs=97.2
Q ss_pred CCCCCCc--chhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccC
Q psy10739 2 LLSSSRV--NIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAG 79 (187)
Q Consensus 2 lL~~~~~--~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g 79 (187)
+|.|++. .++.+|+|+|.|++.++.+..+.|+++|.+|+|+++|.+++.++|.+|+|+|.+.+.+.++.|..... .
T Consensus 16 lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~-~- 93 (233)
T 3tt9_A 16 MLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAE-L- 93 (233)
T ss_dssp TCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-T-
T ss_pred HhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-c-
Confidence 7888888 89999999999999999999999999999999999999999999999999998885432222211111 0
Q ss_pred CChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHHH
Q psy10739 80 KSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMK-SSNPKMRMIATRS 158 (187)
Q Consensus 80 ~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~-S~d~~~ql~a~~~ 158 (187)
..+|.+++.+. +.+++.+-.|+..
T Consensus 94 -------------------------------------------------------GaI~~Lv~lL~~~~~~~~~e~a~~a 118 (233)
T 3tt9_A 94 -------------------------------------------------------NGVPRLLQVLKQTRDLETKKQITGL 118 (233)
T ss_dssp -------------------------------------------------------THHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred -------------------------------------------------------CCHHHHHHHHccCCCHHHHHHHHHH
Confidence 23678888887 5789999999988
Q ss_pred HHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 159 ARKMLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 159 ~RklLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
+..|-+ .+.+...|-.|.+|.||+++
T Consensus 119 L~nLS~---~~~~k~~i~~~~i~~Lv~ll 144 (233)
T 3tt9_A 119 LWNLSS---NDKLKNLMITEALLTLTENI 144 (233)
T ss_dssp HHHHHT---SGGGHHHHHHHHHHHHCCCC
T ss_pred HHHHHc---ChhhHHHHHhccHHHHHHHH
Confidence 866643 34444444445688888754
No 22
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.27 E-value=4.6e-12 Score=112.36 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=100.4
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCC
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKS 81 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d 81 (187)
+|.+++..++.+|+|+|.|++.++....+.|+++|.+|.|+.+|.+++.+++.+|+|++.+.+...++.|..
T Consensus 10 ~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~-------- 81 (457)
T 1xm9_A 10 YLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE-------- 81 (457)
T ss_dssp HHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH--------
T ss_pred HHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH--------
Confidence 577889999999999999999988877779999999999999999999999999999998774432211111
Q ss_pred hHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhc-CCCHHHHHHHHHHHH
Q psy10739 82 FDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMK-SSNPKMRMIATRSAR 160 (187)
Q Consensus 82 ~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~-S~d~~~ql~a~~~~R 160 (187)
+. . ...+|.+++.+. |+|++.+..|+|.+.
T Consensus 82 -----------------------i~--~------------------------~G~i~~Lv~lL~~~~~~~~~~~a~~aL~ 112 (457)
T 1xm9_A 82 -----------------------TR--R------------------------QNGIREAVSLLRRTGNAEIQKQLTGLLW 112 (457)
T ss_dssp -----------------------HH--H------------------------TTCHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred -----------------------HH--H------------------------cCCHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 10 0 024789999998 899999999999996
Q ss_pred hhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 161 KMLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 161 klLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
.+- .. .+.-+.|++ |.+|.||.+|
T Consensus 113 nLa-~~-~~~~~~i~~-g~i~~Lv~ll 136 (457)
T 1xm9_A 113 NLS-ST-DELKEELIA-DALPVLADRV 136 (457)
T ss_dssp HHH-TS-SSTHHHHHH-HHHHHHHHHT
T ss_pred HHh-cC-HHhHHHHHh-ccHHHHHHHH
Confidence 654 43 334455788 9999999875
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.26 E-value=3.6e-12 Score=109.77 Aligned_cols=129 Identities=17% Similarity=0.201 Sum_probs=103.8
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCC
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKS 81 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d 81 (187)
+|.+++..++..|+|+|+||+.|+..+.+.+++.|++|.|+.+|.+++..+|++|+|++++.+.+.+....
T Consensus 242 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~--------- 312 (450)
T 2jdq_A 242 LLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQ--------- 312 (450)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH---------
T ss_pred HHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH---------
Confidence 57788899999999999999999999999999999999999999999999999999999887433211000
Q ss_pred hHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy10739 82 FDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARK 161 (187)
Q Consensus 82 ~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~Rk 161 (187)
.+.. ...++.++..+.++++..+..|++.+..
T Consensus 313 ----------------------~~~~--------------------------~~~l~~L~~~l~~~~~~v~~~a~~~L~~ 344 (450)
T 2jdq_A 313 ----------------------TVID--------------------------ANIFPALISILQTAEFRTRKEAAWAITN 344 (450)
T ss_dssp ----------------------HHHH--------------------------TTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ----------------------HHHH--------------------------CCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 0110 0125678888888999999999999998
Q ss_pred hhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 162 MLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 162 lLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
+........++.+++.|++|.|+++|
T Consensus 345 l~~~~~~~~~~~l~~~~~i~~L~~ll 370 (450)
T 2jdq_A 345 ATSGGSAEQIKYLVELGCIKPLCDLL 370 (450)
T ss_dssp HHHHCCHHHHHHHHHHTCHHHHHHGG
T ss_pred HHcCCCHHHHHHHHHCCCHHHHHHHh
Confidence 87654334577888999999998875
No 24
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.26 E-value=7.6e-12 Score=99.48 Aligned_cols=128 Identities=25% Similarity=0.322 Sum_probs=102.9
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCC
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKS 81 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d 81 (187)
+|.+++..++..|+|+|+|++.++.+..+.+++.|.+|.|+.+|.+++.+++..|+|++++.+...++.+.
T Consensus 52 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~--------- 122 (252)
T 4hxt_A 52 LLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK--------- 122 (252)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH---------
T ss_pred HHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH---------
Confidence 57888899999999999999999899999999999999999999999999999999999888433221110
Q ss_pred hHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy10739 82 FDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARK 161 (187)
Q Consensus 82 ~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~Rk 161 (187)
.+.. ...++.+++.+.++|+..+..|++.+..
T Consensus 123 ----------------------~~~~--------------------------~~~i~~L~~~l~~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 123 ----------------------AIVD--------------------------AGGVEVLVKLLTSTDSEVQKEAARALAN 154 (252)
T ss_dssp ----------------------HHHH--------------------------TTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ----------------------HHHH--------------------------CCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 0110 0136788889999999999999999987
Q ss_pred hhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 162 MLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 162 lLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
+.. ......+.+++.|++|.|+.+|
T Consensus 155 l~~-~~~~~~~~~~~~~~i~~L~~ll 179 (252)
T 4hxt_A 155 IAS-GPDEAIKAIVDAGGVEVLVKLL 179 (252)
T ss_dssp HTT-SCHHHHHHHHHTTHHHHHHHHT
T ss_pred HHc-CCHHHHHHHHHCcCHHHHHHHH
Confidence 754 3333447889999999999875
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.25 E-value=7e-12 Score=108.76 Aligned_cols=107 Identities=13% Similarity=0.150 Sum_probs=86.0
Q ss_pred CCCCCCc----chhHHHHHHHHHhcC---CChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhh
Q psy10739 2 LLSSSRV----NIVKEAAWTISNITA---GNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKAS 74 (187)
Q Consensus 2 lL~~~~~----~i~kea~w~lSNI~a---G~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~ 74 (187)
||.+++. .++++|||+|+|++. |+.++.+.++++|.+|.|+.+|.++++.++++|+|+|++.+...++.+..
T Consensus 222 lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~- 300 (354)
T 3nmw_A 222 TLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA- 300 (354)
T ss_dssp HTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHH-
T ss_pred HhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHH-
Confidence 5666654 499999999999997 99999999999999999999999999999999999999884332111110
Q ss_pred hhccCCChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHH
Q psy10739 75 FKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMI 154 (187)
Q Consensus 75 fKn~g~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~ 154 (187)
+. + ...+|.+++.+.|.++..+..
T Consensus 301 ------------------------------i~--~------------------------~G~i~~Lv~LL~s~~~~i~~~ 324 (354)
T 3nmw_A 301 ------------------------------LW--D------------------------MGAVSMLKNLIHSKHKMIAMG 324 (354)
T ss_dssp ------------------------------HH--H------------------------TTHHHHHHTTTTCSSHHHHHH
T ss_pred ------------------------------HH--H------------------------CCCHHHHHHHHhCCCHHHHHH
Confidence 11 0 023678888999999999999
Q ss_pred HHHHHHhhhcC
Q psy10739 155 ATRSARKMLSK 165 (187)
Q Consensus 155 a~~~~RklLS~ 165 (187)
|+++++.|++.
T Consensus 325 A~~aL~nL~~~ 335 (354)
T 3nmw_A 325 SAAALRNLMAN 335 (354)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 99999888864
No 26
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.22 E-value=1.4e-11 Score=110.38 Aligned_cols=107 Identities=13% Similarity=0.152 Sum_probs=86.3
Q ss_pred CCCCCCcc----hhHHHHHHHHHhcC---CChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhh
Q psy10739 2 LLSSSRVN----IVKEAAWTISNITA---GNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKAS 74 (187)
Q Consensus 2 lL~~~~~~----i~kea~w~lSNI~a---G~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~ 74 (187)
||.+++.. ++++|||+|+||++ |+.++.+.++++|.+|.|+.+|.+++++++++|+|++++.+...++.+..
T Consensus 338 LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~- 416 (458)
T 3nmz_A 338 TLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA- 416 (458)
T ss_dssp HTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHH-
T ss_pred HhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHH-
Confidence 56666553 99999999999997 99999999999999999999999999999999999998884332111110
Q ss_pred hhccCCChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHH
Q psy10739 75 FKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMI 154 (187)
Q Consensus 75 fKn~g~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~ 154 (187)
+. + ...++.+++.+.+.++..+..
T Consensus 417 ------------------------------i~--~------------------------~G~I~~Lv~LL~s~~~~v~~~ 440 (458)
T 3nmz_A 417 ------------------------------LW--D------------------------MGAVSMLKNLIHSKHKMIAMG 440 (458)
T ss_dssp ------------------------------HH--H------------------------HTHHHHHHTTTTCSSHHHHHH
T ss_pred ------------------------------HH--H------------------------CCCHHHHHHHHhCCCHHHHHH
Confidence 11 0 013678888899999999999
Q ss_pred HHHHHHhhhcC
Q psy10739 155 ATRSARKMLSK 165 (187)
Q Consensus 155 a~~~~RklLS~ 165 (187)
|+++++.|++.
T Consensus 441 Aa~AL~nL~~~ 451 (458)
T 3nmz_A 441 SAAALRNLMAN 451 (458)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHcC
Confidence 99999999874
No 27
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.21 E-value=3.5e-11 Score=105.84 Aligned_cols=147 Identities=14% Similarity=0.192 Sum_probs=91.6
Q ss_pred CCCCCC-cchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCC
Q psy10739 2 LLSSSR-VNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGK 80 (187)
Q Consensus 2 lL~~~~-~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~ 80 (187)
+|.+++ ..++++|||+|+||++|+..| +.++++|++|.|+++|.++++++|+||+|++++.. |-. |.
T Consensus 363 lL~~~~~~~v~~~a~~~l~nl~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~----------~~~-~~ 430 (529)
T 1jdh_A 363 LLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ----------FVE-GV 430 (529)
T ss_dssp TTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHC---------------------CBT-TB
T ss_pred HhccccchHHHHHHHHHHHHHhcChhhh-HHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchh----------hhc-cc
Confidence 677776 489999999999999998877 78899999999999999999999999999998721 111 22
Q ss_pred ChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHH
Q psy10739 81 SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSAR 160 (187)
Q Consensus 81 d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~R 160 (187)
..++.+. ...--|..--++. +...... ....++.++..+.+.+++.+..|++.+.
T Consensus 431 ~~~~i~~---~~~~al~~L~~~~-------------~~~~~l~---------~~~~v~~l~~ll~~~~~~v~~~a~~~l~ 485 (529)
T 1jdh_A 431 RMEEIVE---GCTGALHILARDV-------------HNRIVIR---------GLNTIPLFVQLLYSPIENIQRVAAGVLC 485 (529)
T ss_dssp CHHHHHH---HHHHHHHHHTTSH-------------HHHHHHH---------HTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred cHHHHHH---HHHHHHHHHhcCc-------------hHHHHHh---------ccCCccHHHHHHcCCchHHHHHHHHHHH
Confidence 3333321 1111111111100 0000000 0135789999999999999999999998
Q ss_pred hhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 161 KMLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 161 klLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
.+.. .++-...+.++|.++.|.+++
T Consensus 486 ~l~~--~~~~~~~i~~~~~~~~L~~l~ 510 (529)
T 1jdh_A 486 ELAQ--DKEAAEAIEAEGATAPLTELL 510 (529)
T ss_dssp HHTT--SHHHHHHHHHTTCHHHHHHGG
T ss_pred HHhc--CHHHHHHHHHcCChHHHHHHh
Confidence 7653 223344456789999987753
No 28
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.16 E-value=5e-11 Score=106.82 Aligned_cols=167 Identities=11% Similarity=0.036 Sum_probs=111.4
Q ss_pred CCCCCCcchhHHHHHHHHHhcCC-ChhhHHHHHHcCChHHHHHHh-hcCChhhhhhhhccccccchhhhhHhhhhhhccC
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAG-NSRQIDHVIQEGLLPYIVNIL-ENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAG 79 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG-~~~qiq~vi~~~~~p~l~~~l-~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g 79 (187)
||.+++..++..|||+|+|++.| +.+..+.|+++|.+|+|+++| .+++..+++.|+.++.+.+...++.+.......|
T Consensus 251 LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~G 330 (458)
T 3nmz_A 251 QLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDG 330 (458)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTT
T ss_pred HHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcC
Confidence 78889999999999999999997 566778888999999999975 5678899999988887765533333433332233
Q ss_pred CChHHHhhhhhhHHHHHHhhchh--------hHHhhhhcccc---ccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCC
Q psy10739 80 KSFDEMRRKRCEMNVELRKAHKD--------DQLFKRRNIDQ---LDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSN 148 (187)
Q Consensus 80 ~d~~e~RrrR~e~~veLRK~kre--------e~l~KrRn~~~---~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d 148 (187)
. ....+++-+...+ +...--||+.. ...+...... ....++.+++.+.+++
T Consensus 331 a---------l~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~---------~~G~i~~Lv~LL~~~~ 392 (458)
T 3nmz_A 331 A---------LAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR---------ENNCLQTLLQHLKSHS 392 (458)
T ss_dssp H---------HHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHH---------HTTHHHHHHHHSSCSC
T ss_pred c---------HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHH---------HcccHHHHHHHHcCCC
Confidence 1 1222333221111 11122233321 0011000000 0145899999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 149 PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 149 ~~~ql~a~~~~RklLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
.+.+.+|+++++.+-+ ....-++.|+++|+||.||++|
T Consensus 393 ~~v~~~A~~aL~nLa~-~~~~~~~~i~~~G~I~~Lv~LL 430 (458)
T 3nmz_A 393 LTIVSNACGTLWNLSA-RNPKDQEALWDMGAVSMLKNLI 430 (458)
T ss_dssp HHHHHHHHHHHHHHHS-SCHHHHHHHHHHTHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999988754 3345577889999999999986
No 29
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.14 E-value=3.7e-11 Score=110.68 Aligned_cols=126 Identities=15% Similarity=0.098 Sum_probs=98.8
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchh-hhhHhhhhhhccCC
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKV-AAIDRKASFKNAGK 80 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~-~~~~R~~~fKn~g~ 80 (187)
+|.+++..++.+|+|+|.|+|.++.++.+.|+++|.+|+|+.+|.+++.++|.+|+|+|.+.+.. .++.|....+
T Consensus 56 ~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~---- 131 (584)
T 3l6x_A 56 MLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKN---- 131 (584)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHH----
T ss_pred HHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH----
Confidence 68889999999999999999999999999999999999999999999999999999999888432 1211111100
Q ss_pred ChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcC-CCHHHHHHHHHHH
Q psy10739 81 SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKS-SNPKMRMIATRSA 159 (187)
Q Consensus 81 d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S-~d~~~ql~a~~~~ 159 (187)
...++.++..+.+ .+.+.+..|+.++
T Consensus 132 -----------------------------------------------------~GaIp~LV~LL~s~~~~~~~e~aa~aL 158 (584)
T 3l6x_A 132 -----------------------------------------------------CDGVPALVRLLRKARDMDLTEVITGTL 158 (584)
T ss_dssp -----------------------------------------------------TTHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred -----------------------------------------------------cCCHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 0236788888887 6888899999888
Q ss_pred HhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 160 RKMLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 160 RklLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
..| |. +|.....|-.|.||.||++|
T Consensus 159 ~nL-S~--~~~~k~~I~~~alp~Lv~LL 183 (584)
T 3l6x_A 159 WNL-SS--HDSIKMEIVDHALHALTDEV 183 (584)
T ss_dssp HHH-TT--SGGGHHHHHHHTHHHHHHHT
T ss_pred HHH-hC--CchhhHHHHhccHHHHHHHH
Confidence 555 54 56666655566699998754
No 30
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.12 E-value=1.4e-10 Score=106.24 Aligned_cols=146 Identities=16% Similarity=0.188 Sum_probs=96.4
Q ss_pred CCCCCC-cchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCC
Q psy10739 2 LLSSSR-VNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGK 80 (187)
Q Consensus 2 lL~~~~-~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~ 80 (187)
||.+++ ..++++|||+|+||++|+..| +.++++|++|.|+++|.++++++|+||+|++++.. |- .|.
T Consensus 360 lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~----------~~-~~~ 427 (644)
T 2z6h_A 360 LLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ----------FV-EGV 427 (644)
T ss_dssp TTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHTTC--------------------C-CSS
T ss_pred HhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhhhhHhhhccccch----------hc-ccc
Confidence 677775 589999999999999998887 89999999999999999999999999999998721 11 122
Q ss_pred ChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHH
Q psy10739 81 SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSAR 160 (187)
Q Consensus 81 d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~R 160 (187)
+.++.+. ...--|+.--++.... . ... ....++.++..+.+.+++.+..|++.+.
T Consensus 428 ~~~~v~~---~a~~aL~~La~~~~~~--~-----------~l~---------~~~~i~~Lv~lL~~~~~~v~~~a~~aL~ 482 (644)
T 2z6h_A 428 RMEEIVE---GCTGALHILARDVHNR--I-----------VIR---------GLNTIPLFVQLLYSPIENIQRVAAGVLC 482 (644)
T ss_dssp CHHHHHH---HHHHHHHHHTTSHHHH--H-----------HHH---------HTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred cHHHHHH---HHHHHHHHHhcCHHHH--H-----------HHH---------hCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3333321 1222222211221000 0 000 0135889999999999999999999998
Q ss_pred hhhcCCCCCcHHHHH-HcCCcccccccC
Q psy10739 161 KMLSKERHPPIDELI-EAGVVPICVFQR 187 (187)
Q Consensus 161 klLS~e~nPPId~VI-~aGvVP~~V~~~ 187 (187)
.+.. +++...+| ++|.++.|++++
T Consensus 483 ~l~~---~~~~~~~i~~~g~l~~L~~ll 507 (644)
T 2z6h_A 483 ELAQ---DKEAAEAIEAEGATAPLTELL 507 (644)
T ss_dssp HHHT---SHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHc---CHHHHHHHHHcCChhHHHHHH
Confidence 8653 35666655 579999988764
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.10 E-value=1.9e-10 Score=108.42 Aligned_cols=146 Identities=16% Similarity=0.212 Sum_probs=98.8
Q ss_pred CCCCCCc-chhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCC
Q psy10739 2 LLSSSRV-NIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGK 80 (187)
Q Consensus 2 lL~~~~~-~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~ 80 (187)
||.+++. .++++|||+|+||++|+..+ +.++++|++|.|+++|.++++++|+||+|++++.. |-. |.
T Consensus 496 lL~~~~~~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~----------~~~-~~ 563 (780)
T 2z6g_A 496 LLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ----------FVE-GV 563 (780)
T ss_dssp TTSTTCCHHHHHHHHHHHHHHHSSHHHH-HHHHHTTHHHHHHHHHHHHHHHHHHTTC------C----------CST-TC
T ss_pred HhcCCChHHHHHHHHHHHHHHhcCHHHH-HHHHHCCCHHHHHHHHHhcchhHHHHHhhccccch----------hhc-cc
Confidence 6777775 89999999999999988777 78899999999999999999999999999988721 221 22
Q ss_pred ChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHH
Q psy10739 81 SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSAR 160 (187)
Q Consensus 81 d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~R 160 (187)
..++.+. ...--|..--++... | .... ....++.+++.+.+.++..+..|+..+.
T Consensus 564 ~~~~v~~---~a~~aL~~La~~~~~---~----------~~l~---------~~~~i~~Lv~lL~~~~~~v~~~a~~aL~ 618 (780)
T 2z6g_A 564 RMEEIVE---ACTGALHILARDIHN---R----------IVIR---------GLNTIPLFVQLLYSPIENIQRVAAGVLC 618 (780)
T ss_dssp CHHHHHH---HHHHHHHHHTTSHHH---H----------HHHH---------HTCCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred ChHHHHH---HHHHHHHHHhcChhh---H----------HHHH---------HCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3344322 122222221111100 0 0000 0135899999999999999999999998
Q ss_pred hhhcCCCCCcHHHHH-HcCCcccccccC
Q psy10739 161 KMLSKERHPPIDELI-EAGVVPICVFQR 187 (187)
Q Consensus 161 klLS~e~nPPId~VI-~aGvVP~~V~~~ 187 (187)
.+. .+++....| ++|.++.|+.++
T Consensus 619 ~L~---~~~~~~~~i~~~g~i~~L~~Ll 643 (780)
T 2z6g_A 619 ELA---QDKEAAEAIEAEGATAPLTELL 643 (780)
T ss_dssp HHH---TSHHHHHHHHHTTCHHHHHHGG
T ss_pred HHh---cCHHHHHHHHHCCCHHHHHHHH
Confidence 775 246666655 679999998764
No 32
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.87 E-value=2.2e-09 Score=94.27 Aligned_cols=130 Identities=18% Similarity=0.150 Sum_probs=99.3
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcC--ChhhhhhhhccccccchhhhhHhhhhhhccC
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG--DAKVQKEAAINTKMSQKVAAIDRKASFKNAG 79 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~--~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g 79 (187)
||.+++..++..|||+|+|++.++.+..+.+++.|.+|.|+++|.+. +.+++..|+|++++.+...+
T Consensus 274 ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~----------- 342 (529)
T 1jdh_A 274 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ----------- 342 (529)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST-----------
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCc-----------
Confidence 56788899999999999999999999999999999999999999863 37999999999988854321
Q ss_pred CChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCC-HHHHHHHHHH
Q psy10739 80 KSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSN-PKMRMIATRS 158 (187)
Q Consensus 80 ~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d-~~~ql~a~~~ 158 (187)
+.+..|. . +. . ...++.++..+.+.+ +..+..|++.
T Consensus 343 -~~~~~~~-------~---------i~--~------------------------~~~i~~L~~lL~~~~~~~v~~~a~~~ 379 (529)
T 1jdh_A 343 -EAEMAQN-------A---------VR--L------------------------HYGLPVVVKLLHPPSHWPLIKATVGL 379 (529)
T ss_dssp -THHHHHH-------H---------HH--H------------------------TTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred -hHHHHHH-------H---------HH--H------------------------cCChhHHHHHhccccchHHHHHHHHH
Confidence 1011110 0 10 0 013678888888876 6899999999
Q ss_pred HHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 159 ARKMLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 159 ~RklLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
++.+... ++.-+.+++.|++|.|+++|
T Consensus 380 l~nl~~~--~~~~~~~~~~~~i~~L~~ll 406 (529)
T 1jdh_A 380 IRNLALC--PANHAPLREQGAIPRLVQLL 406 (529)
T ss_dssp HHHHTTS--GGGHHHHHHTTHHHHHHHHH
T ss_pred HHHHhcC--hhhhHHHHHcCCHHHHHHHH
Confidence 9888653 33456788999999998764
No 33
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.77 E-value=3.9e-09 Score=96.61 Aligned_cols=130 Identities=19% Similarity=0.178 Sum_probs=98.2
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcC-C-hhhhhhhhccccccchhhhhHhhhhhhccC
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG-D-AKVQKEAAINTKMSQKVAAIDRKASFKNAG 79 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~-~-~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g 79 (187)
||.+++..++..|||+|+|++.++.+..+.+++.|.+|.|+.+|.+. + ..++..|+|++++.+...+
T Consensus 271 lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~----------- 339 (644)
T 2z6h_A 271 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ----------- 339 (644)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST-----------
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCc-----------
Confidence 57788899999999999999999999999999999999999999874 3 7999999999988854321
Q ss_pred CChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCC-HHHHHHHHHH
Q psy10739 80 KSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSN-PKMRMIATRS 158 (187)
Q Consensus 80 ~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d-~~~ql~a~~~ 158 (187)
+.+..+ ..++. ...++.+++.+.+.+ +..+..|++.
T Consensus 340 -~~~~~q-------~~v~~-----------------------------------~~~l~~L~~lL~~~~~~~v~~~a~~~ 376 (644)
T 2z6h_A 340 -EAEMAQ-------NAVRL-----------------------------------HYGLPVVVKLLHPPSHWPLIKATVGL 376 (644)
T ss_dssp -THHHHH-------HHHHH-----------------------------------TTHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred -hHHHHH-------HHHHH-----------------------------------ccChHHHHHHhCccCchHHHHHHHHH
Confidence 100000 00100 012567888887764 7899999999
Q ss_pred HHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 159 ARKMLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 159 ~RklLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
++.+.... .-.+.+++.|+||.||++|
T Consensus 377 L~nLa~~~--~~~~~i~~~~~i~~Lv~lL 403 (644)
T 2z6h_A 377 IRNLALCP--ANHAPLREQGAIPRLVQLL 403 (644)
T ss_dssp HHHHTTSG--GGHHHHHHTTHHHHHHHHH
T ss_pred HHHHccCH--HHHHHHHHcCCHHHHHHHH
Confidence 98886532 2337788999999998764
No 34
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.74 E-value=6.6e-09 Score=85.46 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=56.2
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhh-cCChhhhhhhhcccccc
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILE-NGDAKVQKEAAINTKMS 63 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~-~~~~~vr~ea~w~l~~~ 63 (187)
||.+++..++.+|+|+|.||+.|+.++..+|+++|.+|+|+++|. +++.++++.|+.+|.+.
T Consensus 60 lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nL 122 (233)
T 3tt9_A 60 LLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL 122 (233)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999998 57999999999554333
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.70 E-value=7.2e-09 Score=97.64 Aligned_cols=130 Identities=19% Similarity=0.187 Sum_probs=97.8
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhc-CC-hhhhhhhhccccccchhhhhHhhhhhhccC
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILEN-GD-AKVQKEAAINTKMSQKVAAIDRKASFKNAG 79 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~-~~-~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g 79 (187)
||.+++..++..|||+|+||+.++.+..+.+++.|.+|.|+.+|.+ .+ .+++..|+|+|++.+...+
T Consensus 407 lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~----------- 475 (780)
T 2z6g_A 407 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ----------- 475 (780)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSST-----------
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCc-----------
Confidence 5778889999999999999999999999999999999999999987 34 3899999999988843211
Q ss_pred CChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCH-HHHHHHHHH
Q psy10739 80 KSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNP-KMRMIATRS 158 (187)
Q Consensus 80 ~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~-~~ql~a~~~ 158 (187)
+.+..+. . +. . ...++.++..+.+.+. ..+..|++.
T Consensus 476 -~~~~~~~-------~---------v~---~-----------------------~~~l~~L~~lL~~~~~~~v~~~A~~a 512 (780)
T 2z6g_A 476 -DAEMAQN-------A---------VR---L-----------------------HYGLPVVVKLLHPPSHWPLIKATVGL 512 (780)
T ss_dssp -THHHHHH-------H---------HH---H-----------------------TTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred -hHHHHHH-------H---------HH---H-----------------------cCCHHHHHHHhcCCChHHHHHHHHHH
Confidence 1000000 0 00 0 0236788888887774 889999999
Q ss_pred HHhhhcCCCCCcHHHHHHcCCcccccccC
Q psy10739 159 ARKMLSKERHPPIDELIEAGVVPICVFQR 187 (187)
Q Consensus 159 ~RklLS~e~nPPId~VI~aGvVP~~V~~~ 187 (187)
++.+... ++.-..+++.|+||.||++|
T Consensus 513 L~nLa~~--~~~~~~i~~~g~i~~Lv~lL 539 (780)
T 2z6g_A 513 IRNLALC--PANHAPLREQGAIPRLVQLL 539 (780)
T ss_dssp HHHHHSS--HHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHhcC--HHHHHHHHHCCCHHHHHHHH
Confidence 9888642 22235677899999998764
No 36
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.61 E-value=3.3e-08 Score=91.02 Aligned_cols=77 Identities=17% Similarity=0.137 Sum_probs=62.8
Q ss_pred CCCCCC--------cchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcC--ChhhhhhhhccccccchhhhhHh
Q psy10739 2 LLSSSR--------VNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG--DAKVQKEAAINTKMSQKVAAIDR 71 (187)
Q Consensus 2 lL~~~~--------~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~--~~~vr~ea~w~l~~~t~~~~~~R 71 (187)
||.+++ ..+...|||+|+||++|+.++.+.|+++|.+|.|+.+|.+. ...+++.|+|++++....+. =
T Consensus 403 LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e--l 480 (584)
T 3l6x_A 403 NLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE--L 480 (584)
T ss_dssp TSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH--H
T ss_pred HhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH--H
Confidence 566653 46789999999999999999999999999999999999986 78999999999987755532 2
Q ss_pred hhhhhccCC
Q psy10739 72 KASFKNAGK 80 (187)
Q Consensus 72 ~~~fKn~g~ 80 (187)
+..||+.|.
T Consensus 481 r~~~kk~G~ 489 (584)
T 3l6x_A 481 RKPLEKEGW 489 (584)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHHcCC
Confidence 334554454
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.94 E-value=6.6e-06 Score=77.82 Aligned_cols=123 Identities=12% Similarity=0.176 Sum_probs=84.4
Q ss_pred hHHHHHHHHHhcCCCh---hhH-HHHHHc-CChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCChHHH
Q psy10739 11 VKEAAWTISNITAGNS---RQI-DHVIQE-GLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKSFDEM 85 (187)
Q Consensus 11 ~kea~w~lSNI~aG~~---~qi-q~vi~~-~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d~~e~ 85 (187)
++||..+|+|+|+++. +-+ +.++.. |.+|.|.++|.+.+..+|+.|||+++|.+. .++.+-+.|-+.+ ++
T Consensus 576 ~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~-~~--- 650 (778)
T 3opb_A 576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLE-NP--- 650 (778)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCS-SH---
T ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhc-Cc---
Confidence 8899999999999863 223 567885 999999999999999999999999988855 3333323333221 00
Q ss_pred hhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHHHhhhcC
Q psy10739 86 RRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSK 165 (187)
Q Consensus 86 RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~RklLS~ 165 (187)
|+. ..++.++..+.++|++.+..|++++.-+-|
T Consensus 651 -----------------------~~~-----------------------~rL~lLV~Ll~s~D~~~r~AAagALAnLts- 683 (778)
T 3opb_A 651 -----------------------QSL-----------------------RNFNILVKLLQLSDVESQRAVAAIFANIAT- 683 (778)
T ss_dssp -----------------------HHH-----------------------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHH-
T ss_pred -----------------------hhh-----------------------ccHHHHHHHHcCCCHHHHHHHHHHHHHhcC-
Confidence 000 015677888888999999999988844433
Q ss_pred CCCCcH-HHHHHc-CCccccccc
Q psy10739 166 ERHPPI-DELIEA-GVVPICVFQ 186 (187)
Q Consensus 166 e~nPPI-d~VI~a-GvVP~~V~~ 186 (187)
.+|+| +.+.+. |.+..++.+
T Consensus 684 -~~~~ia~~ll~~~~gi~~Ll~l 705 (778)
T 3opb_A 684 -TIPLIAKELLTKKELIENAIQV 705 (778)
T ss_dssp -HCHHHHHHHTTCHHHHHHHHHH
T ss_pred -CChHHHHHHHHccccHHHHHHH
Confidence 25666 555554 555555543
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.85 E-value=3.7e-06 Score=79.54 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=58.2
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhH-HHHHHcC------ChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhh
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQI-DHVIQEG------LLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKAS 74 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qi-q~vi~~~------~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~ 74 (187)
||.+++..|++.|||+|+|+++ +++++ +.+++.+ -++.|+.++..+|+++|+.|+|+++|.+...+......
T Consensus 614 LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~l 692 (778)
T 3opb_A 614 LMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKEL 692 (778)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 6778889999999999999998 45555 5665433 37889999999999999999999999976554444444
Q ss_pred hh
Q psy10739 75 FK 76 (187)
Q Consensus 75 fK 76 (187)
+.
T Consensus 693 l~ 694 (778)
T 3opb_A 693 LT 694 (778)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 39
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.44 E-value=4.6e-05 Score=70.75 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=52.1
Q ss_pred CCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHH-HHHhhcCChhhhhhhhccccccchh
Q psy10739 3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYI-VNILENGDAKVQKEAAINTKMSQKV 66 (187)
Q Consensus 3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l-~~~l~~~~~~vr~ea~w~l~~~t~~ 66 (187)
|.|++...|..|||+|+||+.+ +...+.++..|+++.+ ..+|.+.+.+||.+|+|++.+.+..
T Consensus 43 L~S~~~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 43 LKSPDAKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp HSSSCCSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 6899999999999999999975 4555567777777765 5568889999999999999887644
No 40
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.14 E-value=0.00013 Score=53.14 Aligned_cols=23 Identities=13% Similarity=0.037 Sum_probs=12.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHH
Q psy10739 138 PEMIEGMKSSNPKMRMIATRSAR 160 (187)
Q Consensus 138 ~~iv~~l~S~d~~~ql~a~~~~R 160 (187)
+.++..+.+.|+.....|++++.
T Consensus 107 ~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 107 AAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Confidence 34445555556666666655543
No 41
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.98 E-value=0.0037 Score=47.86 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=43.4
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccc
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQ 64 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t 64 (187)
+|.+++..+|..|+|+|..+.. .+.+|.|+.+|.+++..+|..|+|+++...
T Consensus 22 ~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~ 73 (201)
T 3ltj_A 22 NLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG 73 (201)
T ss_dssp HTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC
Confidence 5788999999999999998753 356788899998889999999999987653
No 42
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.75 E-value=0.00035 Score=59.50 Aligned_cols=64 Identities=13% Similarity=0.205 Sum_probs=52.7
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCCh-hhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchh
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKV 66 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~-~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~ 66 (187)
+|.+++..+|..|++++++|+.|.. ++++..+ ..++|.|+..|.+.++.||..|||+++.....
T Consensus 374 ~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 3677888899999999999999865 4443333 57899999999999999999999999777443
No 43
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.75 E-value=0.00032 Score=51.08 Aligned_cols=54 Identities=26% Similarity=0.298 Sum_probs=46.1
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchh
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKV 66 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~ 66 (187)
+|.+++..+|..|+|+|+++.. ...+|.|+.+|.+.+..||.+|+|+++.....
T Consensus 50 ~L~d~~~~vR~~A~~aL~~~~~-----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~~ 103 (131)
T 1te4_A 50 SLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGGE 103 (131)
T ss_dssp GGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSH
T ss_pred HHcCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH
Confidence 5788999999999999999963 22478999999999999999999999776643
No 44
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.73 E-value=0.00032 Score=65.68 Aligned_cols=64 Identities=14% Similarity=0.138 Sum_probs=55.0
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchh
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKV 66 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~ 66 (187)
+|.+++..+|..|+|++++|+.|..+++... -.+++|.|+..|.+.+..||..|+|+++..+..
T Consensus 367 ~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~-l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 367 LLFHHEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp HHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999998877643 356899999999999999999999999876554
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.69 E-value=0.0052 Score=47.38 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=41.8
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccc
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQ 64 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t 64 (187)
+|.+++..++..|+|+|+++.. .+.+|.|+.+|.+.+..||..|+|+++...
T Consensus 58 ~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 58 ALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIG 109 (211)
T ss_dssp HTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHhhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 4678888899999999998852 356788888888888888888888886653
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.63 E-value=0.0044 Score=47.41 Aligned_cols=51 Identities=20% Similarity=0.218 Sum_probs=44.3
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS 63 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~ 63 (187)
+|.+++..++..|+|+|+++.. .+.+|.|+.+|.+.+..+|..|+|+++..
T Consensus 53 ~l~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 103 (201)
T 3ltj_A 53 ALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQI 103 (201)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHhhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 4678899999999999999852 25688999999999999999999999765
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.62 E-value=0.00082 Score=60.93 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=50.7
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhh
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVA 67 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~ 67 (187)
+|.|+++.||+.|+|++.+|+..+++.+ -+.+++|.|..+|.+.+..|+..|+++++......
T Consensus 129 ~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 129 CLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIADSNPMVVANAVAALSEISESH 191 (591)
T ss_dssp HSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSC
T ss_pred HcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhC
Confidence 5778889999999999999987766644 34678899999999889999999999987664443
No 48
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.50 E-value=0.0003 Score=65.85 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=51.3
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchh
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKV 66 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~ 66 (187)
+|.++++.+|..|||++++++.....+.....-.+++|.|+..|...+..||..|+|++++....
T Consensus 408 ~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 408 CLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999975433322233456789999999888999999999999776543
No 49
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.49 E-value=0.0058 Score=47.07 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=79.9
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhhccCCC
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKS 81 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fKn~g~d 81 (187)
+|.+++..+|..|++.|+.+.. .+.+|.|+.+|.+.+..+|..|+|+++.......-.....+-+ ..|
T Consensus 27 ~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-~~~ 94 (211)
T 3ltm_A 27 NLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALK-DED 94 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTT-CSS
T ss_pred HHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHc-CCC
Confidence 5788999999999999999753 3678999999999999999999999976643222222222221 112
Q ss_pred hHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhccc--CCCCCCCccCCHHHHHHHhcCCCHHHHHHHHHHH
Q psy10739 82 FDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVI--EPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSA 159 (187)
Q Consensus 82 ~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~--~~~~~~~~~~~l~~iv~~l~S~d~~~ql~a~~~~ 159 (187)
...|. ...--|.+....+.+..-... +.+... ..... ..-........++.++..+.+.|+.....|++++
T Consensus 95 -~~vr~---~a~~aL~~~~~~~~~~~L~~~--l~d~~~-~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL 167 (211)
T 3ltm_A 95 -GWVRQ---SAAVALGQIGDERAVEPLIKA--LKDEDW-FVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADAL 167 (211)
T ss_dssp -HHHHH---HHHHHHHHHCCGGGHHHHHHH--TTCSSH-HHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred -HHHHH---HHHHHHHHhCcHHHHHHHHHH--HhCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 23332 222233322222111110000 000000 00000 0000000123578888888888999999999888
Q ss_pred Hhh
Q psy10739 160 RKM 162 (187)
Q Consensus 160 Rkl 162 (187)
.++
T Consensus 168 ~~~ 170 (211)
T 3ltm_A 168 GEI 170 (211)
T ss_dssp HHH
T ss_pred HHh
Confidence 776
No 50
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.19 E-value=0.0036 Score=50.41 Aligned_cols=54 Identities=9% Similarity=0.007 Sum_probs=25.3
Q ss_pred CCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccc
Q psy10739 3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTK 61 (187)
Q Consensus 3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~ 61 (187)
+.+++..++..|+|+|+++..+...... .++|.|+.+|.+.+..||..|+|+++
T Consensus 100 ~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d~~~~vR~~a~~aL~ 153 (280)
T 1oyz_A 100 LNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAIS 153 (280)
T ss_dssp HHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 3455566666666666666533321111 12344444444444444444444443
No 51
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=95.70 E-value=0.0079 Score=55.41 Aligned_cols=63 Identities=13% Similarity=0.218 Sum_probs=52.5
Q ss_pred CCCCCcchhHHHHHHHHHhcCCCh-hhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchh
Q psy10739 3 LSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKV 66 (187)
Q Consensus 3 L~~~~~~i~kea~w~lSNI~aG~~-~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~ 66 (187)
|.+++..+|..|+|++++|+.|.. +.+...+ .+++|.|+..|.+.++.||..|+|+++.....
T Consensus 375 l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 375 IKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp TTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 567788899999999999999876 5565443 55899999999999999999999999766443
No 52
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=95.61 E-value=0.0038 Score=50.30 Aligned_cols=52 Identities=8% Similarity=-0.022 Sum_probs=43.4
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccc
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQ 64 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t 64 (187)
+|.+++..+|..|+|+|+++.. .+.+|.|+.+|.+.+..+|..|+|+++...
T Consensus 31 ~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 31 LLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred HHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 4778899999999999999962 245788899999999999999999986653
No 53
>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B
Probab=94.90 E-value=0.016 Score=34.57 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=30.7
Q ss_pred hhhhhhccCCChHHHhhhhhhHHHHHHhhchhhHHhhhhc
Q psy10739 71 RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRN 110 (187)
Q Consensus 71 R~~~fKn~g~d~~e~RrrR~e~~veLRK~kree~l~KrRn 110 (187)
|...||+++...++-.|||+ .+++-|.+|-+.++.-|+
T Consensus 3 R~sqYK~k~~~~~q~~rRr~--~L~~QK~~R~D~~nhaR~ 40 (40)
T 2p8q_B 3 RLSQYKSKYSSLEQSERRRR--LLELQKSKRLDYVNHARR 40 (40)
T ss_dssp CGGGTTCCCCSCSTTHHHHH--HHHHHHHHHHHHHHTTTC
T ss_pred cHHhhccccchhhHHHHHHH--HHHHHHHHHHHHHHHhcC
Confidence 77889999877777777777 799999999988776553
No 54
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=94.37 E-value=0.024 Score=52.10 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=51.6
Q ss_pred CCCCCcchhHHHHHHHHHhcCCCh-hhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccch
Q psy10739 3 LSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQK 65 (187)
Q Consensus 3 L~~~~~~i~kea~w~lSNI~aG~~-~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~ 65 (187)
|.+++..+|..|+|++++|+.|.. +.+...++ .++|.|+..|.+.+..||..|+|+++....
T Consensus 378 l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~ 440 (861)
T 2bpt_A 378 ITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIAD 440 (861)
T ss_dssp TTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 567778899999999999999864 66665554 589999999999999999999999875543
No 55
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=94.21 E-value=0.19 Score=45.32 Aligned_cols=62 Identities=23% Similarity=0.270 Sum_probs=48.9
Q ss_pred CCCCCCcchhHHHHHHHHHhcCC---ChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccch
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAG---NSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQK 65 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG---~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~ 65 (187)
+|+|.+..|+.||+|++.+++.+ +++.++.++ ..+.+.|+.+++ .+..+|.-|+.+++....
T Consensus 247 ~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~ 311 (591)
T 2vgl_B 247 RLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQ 311 (591)
T ss_dssp CSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHH
T ss_pred HHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHH
Confidence 68899999999999999999853 345566554 456788887765 789999999999866543
No 56
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.86 E-value=0.072 Score=51.55 Aligned_cols=62 Identities=16% Similarity=0.122 Sum_probs=50.2
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhH
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAID 70 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~ 70 (187)
|+++.++.+|.-|+|++..|++|+.. ..+| ..|..+++..+..||.-|+.++++.-.+..+.
T Consensus 620 L~~~~d~~VR~gAalALGli~aGn~~--~~ai-----d~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 620 LSKSHNAHVRCGTAFALGIACAGKGL--QSAI-----DVLDPLTKDPVDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSSCC--HHHH-----HHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred HHhcCCHHHHHHHHHHHHHhccCCCc--HHHH-----HHHHHHccCCCHHHHHHHHHHHHHHhcCCccc
Confidence 56678899999999999999999874 3343 35667778889999999999999887666555
No 57
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=92.58 E-value=0.08 Score=48.93 Aligned_cols=47 Identities=9% Similarity=0.068 Sum_probs=41.3
Q ss_pred CCCCCCCcchhHHHHHHHHHhcC-CChhhHHHHHHcCChHHHHHHhhc
Q psy10739 1 SLLSSSRVNIVKEAAWTISNITA-GNSRQIDHVIQEGLLPYIVNILEN 47 (187)
Q Consensus 1 ~lL~~~~~~i~kea~w~lSNI~a-G~~~qiq~vi~~~~~p~l~~~l~~ 47 (187)
.||.+++..|+.+|+|++.|++. |..+-...++..|++|+|..+|..
T Consensus 83 ~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~ 130 (684)
T 4gmo_A 83 ETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAKA 130 (684)
T ss_dssp TTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHHHHHHHHh
Confidence 37888999999999999999985 457777889999999999999864
No 58
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=92.22 E-value=0.017 Score=53.15 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=45.5
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhH-HHHHHcCChHHHHHHhhcCChhhhhhhhccccccc
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQI-DHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQ 64 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qi-q~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t 64 (187)
+|.+++..+|..|||++++++......+ ..-.-..++|.|+..|.+. ..+|..|+|+++...
T Consensus 416 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~ 478 (876)
T 1qgr_A 416 LMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLA 478 (876)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Confidence 3567788999999999999997654432 0011135678888888774 899999999986654
No 59
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=91.98 E-value=0.12 Score=41.70 Aligned_cols=75 Identities=7% Similarity=0.140 Sum_probs=56.1
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCCh---hhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhh
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNS---RQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFK 76 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~---~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fK 76 (187)
.|.|++..+|.+++.+|+.++.-.. .+....+...++|.|..+|...+..||..|.=+++-.....++.....|-
T Consensus 154 ~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l 231 (249)
T 2qk1_A 154 HMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTL 231 (249)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHH
T ss_pred HHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 3678889999999999888874333 45555555689999999999999999998888876665444444455554
No 60
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=91.36 E-value=0.12 Score=45.09 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=48.7
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHH-HHHcCChHHHHHHhhcCChhhhhhhhccccccc
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDH-VIQEGLLPYIVNILENGDAKVQKEAAINTKMSQ 64 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~-vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t 64 (187)
+|.+++..+|..|+++++.++.+-...... ..-..++|.+..++.+.+..||..|+|+++...
T Consensus 289 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 289 LMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS 352 (588)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 456778889999999999998654433221 234567899999999999999999999987664
No 61
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=88.71 E-value=0.54 Score=36.86 Aligned_cols=74 Identities=16% Similarity=0.133 Sum_probs=52.8
Q ss_pred CCCCCCcchhHHHHHHHHHhcCC-Chhh-HHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhhhHhhhhhh
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAG-NSRQ-IDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAAIDRKASFK 76 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG-~~~q-iq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fK 76 (187)
.|.|.++.+|.+++-.|+.+.+- ++++ ....+. .++|.|+.+|.+.+.+||..|.=+++......++.-...|-
T Consensus 141 ~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l 216 (242)
T 2qk2_A 141 SLSNKNPSVKSETALFIARALTRTQPTALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLL 216 (242)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGG
T ss_pred HHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 36788889999999999996543 2332 223333 68999999999999999999888876654444444455554
No 62
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=88.14 E-value=0.39 Score=43.58 Aligned_cols=56 Identities=18% Similarity=0.174 Sum_probs=44.0
Q ss_pred CCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccch
Q psy10739 3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQK 65 (187)
Q Consensus 3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~ 65 (187)
|.|+++.++--|.++|++|.. .+-+ ..++|.+..+|.+.+..||+-|+++++....
T Consensus 116 L~~~n~~vr~lAL~~L~~i~~--~~~~-----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~ 171 (618)
T 1w63_A 116 LNHSTQFVQGLALCTLGCMGS--SEMC-----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIR 171 (618)
T ss_dssp HSCSSSHHHHHHHHHHHHHCC--HHHH-----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCHhHHHHHHHHHHhcCC--HHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 568889999999999999973 3322 3567888999999999999999999865533
No 63
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=87.63 E-value=0.071 Score=48.92 Aligned_cols=62 Identities=16% Similarity=0.242 Sum_probs=43.5
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhH-HHHHHcCChHHHHHHhhcCChhhhhhhhccccccc
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQI-DHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQ 64 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qi-q~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t 64 (187)
.|.++++.+|..|+|++++++..-..++ ..-.-..++|.|+..|.+. ..+|..|||+++...
T Consensus 419 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~ 481 (861)
T 2bpt_A 419 LMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLV 481 (861)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 3567788999999999999986422211 0001123578888888775 899999999986543
No 64
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=87.46 E-value=0.23 Score=43.19 Aligned_cols=56 Identities=7% Similarity=0.103 Sum_probs=38.1
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccc
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINT 60 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l 60 (187)
+|.+++..+|..|+.++++++..-..+. .-..++|.|..++.+.++.+|..++|++
T Consensus 449 ~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~llp~l~~~~~~~~~~~R~~a~~~l 504 (588)
T 1b3u_A 449 WLVDHVYAIREAATSNLKKLVEKFGKEW---AHATIIPKVLAMSGDPNYLHRMTTLFCI 504 (588)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHHHHCHHH---HHHHTHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHhCchh---HHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 4666777788888888888865422221 1245677787777777888888888764
No 65
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=86.23 E-value=0.079 Score=48.21 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=51.9
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhh
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVA 67 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~ 67 (187)
+|.|+++.+||-|++++.+|..+.++.++ ++++.+..+|...++.|+--|+++++-.....
T Consensus 150 ~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~ 210 (618)
T 1w63_A 150 LLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERS 210 (618)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhC
Confidence 46788999999999999999998887664 68899999999999999999999986654433
No 66
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=84.10 E-value=0.45 Score=44.17 Aligned_cols=68 Identities=7% Similarity=0.142 Sum_probs=59.6
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHH-Hc-CChHHHHHHhhcCChhhhhhhhccccccchhhhh
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVI-QE-GLLPYIVNILENGDAKVQKEAAINTKMSQKVAAI 69 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi-~~-~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~~ 69 (187)
||.+.+..+|.-|.-.|+.++.+..+.+|..| ++ +-+|.|+++|+.....+|.||.-.+...+.+.++
T Consensus 130 lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~ 199 (651)
T 3grl_A 130 LLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGA 199 (651)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHH
T ss_pred HhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHH
Confidence 67888899999999999999999999888877 34 8999999999999999999999998777766554
No 67
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=81.46 E-value=0.43 Score=45.33 Aligned_cols=53 Identities=17% Similarity=0.142 Sum_probs=41.1
Q ss_pred CcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739 7 RVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS 63 (187)
Q Consensus 7 ~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~ 63 (187)
.+-+|.-|||+++.++.--. .-.-..++|.++..|.+.+..||..||||+..-
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~----~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~ 523 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLT----KAQLIELMPILATFLQTDEYVVYTYAAITIEKI 523 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSC----HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CceehHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 67899999999999986421 112234678888888888899999999998663
No 68
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=80.79 E-value=1 Score=41.79 Aligned_cols=47 Identities=19% Similarity=0.343 Sum_probs=40.9
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHc-CChHHHHHHhhcCC
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQE-GLLPYIVNILENGD 49 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~-~~~p~l~~~l~~~~ 49 (187)
+|.+++..||-||.-.|++++.|+.+ ||.++.. |.++.|++++....
T Consensus 174 lL~d~rE~iRneallLL~~Lt~~n~~-iQklVAFEnaFe~Lf~Ii~~Eg 221 (651)
T 3grl_A 174 LLADSREVIRNDGVLLLQALTRSNGA-IQKIVAFENAFERLLDIITEEG 221 (651)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHHHHT
T ss_pred HHhCchHHHHHHHHHHHHHHhcCCHH-HHHHHHHhccHHHHHHHHHhcC
Confidence 67888999999999999999998654 8888875 99999999997644
No 69
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=80.18 E-value=0.38 Score=40.43 Aligned_cols=62 Identities=6% Similarity=0.004 Sum_probs=47.8
Q ss_pred CCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccc
Q psy10739 3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQ 64 (187)
Q Consensus 3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t 64 (187)
+.+++..+++.+|+++..++....+.+...+..+++|.++..+.+.+.+++..|++.++...
T Consensus 226 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~ 287 (462)
T 1ibr_B 226 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC 287 (462)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 46678899999999999998655544433333377888888888889999999999876553
No 70
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=75.72 E-value=0.72 Score=39.81 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=29.9
Q ss_pred hhhHhhhhhhccCCChHHHhhhhhhHHHHHHhhchhhHHhhhhcc
Q psy10739 67 AAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNI 111 (187)
Q Consensus 67 ~~~~R~~~fKn~g~d~~e~RrrR~e~~veLRK~kree~l~KrRn~ 111 (187)
.+..|...||+++...+.-+||| ..++.-|++|.+....-|+.
T Consensus 28 a~HPR~sqyK~k~~~~~Q~~RR~--~~Le~QK~kR~d~~~haR~L 70 (365)
T 3gjx_B 28 APHPRLSQYKSKYSSLEQSERRR--RLLELQKSKRLDYVNHARRL 70 (365)
T ss_dssp SCCGGGCC---CTTCCSCCHHHH--HHHHHTCCCCSCHHHHHHHH
T ss_pred CCCcchhhcccccchhhHHHHHH--HHHHHHHHHHHHHHHHhccc
Confidence 34579999999876544444444 47888999999999988885
No 71
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=67.01 E-value=1.6 Score=34.94 Aligned_cols=167 Identities=16% Similarity=0.146 Sum_probs=86.9
Q ss_pred CCCCCcchhHHHHHHHHH-hcCCChhhHHHHHH-cCChHHHHHHh-hcCChhhhhhhhccccccchhhhhHhhhhhh-cc
Q psy10739 3 LSSSRVNIVKEAAWTISN-ITAGNSRQIDHVIQ-EGLLPYIVNIL-ENGDAKVQKEAAINTKMSQKVAAIDRKASFK-NA 78 (187)
Q Consensus 3 L~~~~~~i~kea~w~lSN-I~aG~~~qiq~vi~-~~~~p~l~~~l-~~~~~~vr~ea~w~l~~~t~~~~~~R~~~fK-n~ 78 (187)
|.|++-.-|++|.=.|+. ++.|.+.-+...-+ ..++..|...| ...++.|+..|+-+++..+.+-. ...|. .
T Consensus 25 l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~---~~~f~~~- 100 (249)
T 2qk1_A 25 ITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLK---TPGFSKD- 100 (249)
T ss_dssp HTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHC---TTTSCHH-
T ss_pred hhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc---cccccHH-
Confidence 467788889999999999 98774432210001 24566777788 67899999999999865532211 01121 1
Q ss_pred CCChHHHhhhhhhHHHHHHhhchhhHHhhhhccccccchhhhhhcccCCCCCCC-ccCCHHHHHHHhcCCCHHHHHHHHH
Q psy10739 79 GKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSP-IKMTVPEMIEGMKSSNPKMRMIATR 157 (187)
Q Consensus 79 g~d~~e~RrrR~e~~veLRK~kree~l~KrRn~~~~~~~~~s~~~~~~~~~~~~-~~~~l~~iv~~l~S~d~~~ql~a~~ 157 (187)
....=-...++.-|.|+..--..-... -....... + +....+ ...-++.++..+.+.++..+..++.
T Consensus 101 ------y~~~llp~ll~~l~dkk~~V~~aa~~a----l~~i~~~~-~-~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~ 168 (249)
T 2qk1_A 101 ------YVSLVFTPLLDRTKEKKPSVIEAIRKA----LLTICKYY-D-PLASSGRNEDMLKDILEHMKHKTPQIRMECTQ 168 (249)
T ss_dssp ------HHHHHHHHHHHGGGCCCHHHHHHHHHH----HHHHHHHS-C-TTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHcCCCHHHHHHHHHH----HHHHHHHc-c-ccccCCcHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 000011222333233322100000000 00000000 0 000000 1235788999999999999999999
Q ss_pred HHHhhhcCCCCCcHH--HHHHcCCcccccc
Q psy10739 158 SARKMLSKERHPPID--ELIEAGVVPICVF 185 (187)
Q Consensus 158 ~~RklLS~e~nPPId--~VI~aGvVP~~V~ 185 (187)
.+-+++...+.+|-+ .-+...++|.+++
T Consensus 169 ~l~~~~~~~~~~~~~l~~~l~~~iip~l~~ 198 (249)
T 2qk1_A 169 LFNASMKEEKDGYSTLQRYLKDEVVPIVIQ 198 (249)
T ss_dssp HHHHHHHHCCSCSHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHH
Confidence 998888765443332 2221235555544
No 72
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=64.20 E-value=4.6 Score=36.66 Aligned_cols=53 Identities=21% Similarity=0.191 Sum_probs=42.3
Q ss_pred CCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHh--hcCChhhhhhhhccccc
Q psy10739 3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNIL--ENGDAKVQKEAAINTKM 62 (187)
Q Consensus 3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l--~~~~~~vr~ea~w~l~~ 62 (187)
|.|+++-++--|..+++||. +++-++ .++|.+..+| .+.++.|||=|+.|+..
T Consensus 120 l~~~n~~ir~lALr~L~~i~--~~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~k 174 (621)
T 2vgl_A 120 LASRNPTFMGLALHCIANVG--SREMAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLR 174 (621)
T ss_dssp HHSCCHHHHHHHHHHHHHHC--CHHHHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhhccC--CHHHHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 45788889999999999995 344333 4689999999 88899999999998643
No 73
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=62.23 E-value=2.4 Score=32.95 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=44.8
Q ss_pred CCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739 5 SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS 63 (187)
Q Consensus 5 ~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~ 63 (187)
+++..++..||-+++.++.+-...+...+ ..++|.|++.|.+....||.-|+-++...
T Consensus 68 d~~~~V~~~a~~~l~~la~~l~~~~~~~~-~~ilp~ll~~l~d~~~~vr~~a~~aL~~~ 125 (242)
T 2qk2_A 68 DSNVVLVAMAGKCLALLAKGLAKRFSNYA-SACVPSLLEKFKEKKPNVVTALREAIDAI 125 (242)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 66788999999999999965444343322 34799999999999999999888887433
No 74
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=56.57 E-value=6.9 Score=33.43 Aligned_cols=52 Identities=12% Similarity=0.191 Sum_probs=42.1
Q ss_pred CCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccc
Q psy10739 3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTK 61 (187)
Q Consensus 3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~ 61 (187)
++|+++-+|--|..++++|...+- ++ .+.+.+-..|.+.++.||+=|+.+..
T Consensus 113 l~~~N~~iR~lALRtL~~I~~~~m--~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~ 164 (355)
T 3tjz_B 113 MTGKEDSYRGPAVRALCQITDSTM--LQ-----AIERYMKQAIVDKVPSVSSSALVSSL 164 (355)
T ss_dssp HHSSCHHHHHHHHHHHHHHCCTTT--HH-----HHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred cCCCcHhHHHHHHHHHhcCCCHHH--HH-----HHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 457888999999999999987653 22 24677888899999999999999864
No 75
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=54.96 E-value=6.4 Score=36.79 Aligned_cols=55 Identities=18% Similarity=0.269 Sum_probs=40.2
Q ss_pred CCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccc
Q psy10739 6 SRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQ 64 (187)
Q Consensus 6 ~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t 64 (187)
+++.++..+||+++..+.--..+.+ .+ ..+++.|+..|.+ ..|+..|||++....
T Consensus 501 ~~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl~~l~~~l~~--~~V~~~A~~al~~l~ 555 (963)
T 2x19_B 501 SNVQLADTVMFTIGALSEWLADHPV-MI-NSVLPLVLHALGN--PELSVSSVSTLKKIC 555 (963)
T ss_dssp CSHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTHHHHHHHTTC--GGGHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHHHHHHHHhCC--chHHHHHHHHHHHHH
Confidence 4667999999999998742122222 22 4688888888864 899999999986654
No 76
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=50.12 E-value=6.7 Score=38.01 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=23.7
Q ss_pred ChHHHHHHh-hcCChhhhhhhhccccccchhhh
Q psy10739 37 LLPYIVNIL-ENGDAKVQKEAAINTKMSQKVAA 68 (187)
Q Consensus 37 ~~p~l~~~l-~~~~~~vr~ea~w~l~~~t~~~~ 68 (187)
.+|.++.+| .+.+..||.-|+||++....+.+
T Consensus 612 ~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~ 644 (963)
T 4ady_A 612 TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG 644 (963)
T ss_dssp SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC
Confidence 456677654 56799999999999988765443
No 77
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=45.61 E-value=9.2 Score=36.91 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=46.4
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhh
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVA 67 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~ 67 (187)
.|.+++..+|.=++.++..+.......+...+. .++|.|+..|...+.+||.-|+++++......
T Consensus 973 ~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~-~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~ 1037 (1230)
T 1u6g_C 973 YLISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDPDLNVRRVALVTFNSAAHNK 1037 (1230)
T ss_dssp TSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHH-HHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHC
T ss_pred HhcCCCHHHHHHHHHHHHHHHccCchhhHHHHH-HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC
Confidence 456677778877777888877655544443333 35788888899999999999999987654433
No 78
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=44.04 E-value=4.2 Score=36.94 Aligned_cols=59 Identities=10% Similarity=0.089 Sum_probs=48.5
Q ss_pred CCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccch
Q psy10739 4 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQK 65 (187)
Q Consensus 4 ~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~ 65 (187)
.|+++-|||-|+-++.+|..-.++.+. ..++++.|.++|...++.|+.=|+.++.-...
T Consensus 158 ~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 158 GDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 688899999999999999976665543 25899999999999999999888888755433
No 79
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=43.70 E-value=7.8 Score=37.54 Aligned_cols=56 Identities=11% Similarity=0.197 Sum_probs=38.6
Q ss_pred chhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhc-----CChhhhhhhhccccccc
Q psy10739 9 NIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILEN-----GDAKVQKEAAINTKMSQ 64 (187)
Q Consensus 9 ~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~-----~~~~vr~ea~w~l~~~t 64 (187)
..+.=+||+++-|+.|-.+....-+-..++|.|+.++.+ ....++.=+||++|--+
T Consensus 468 ~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~ 528 (1023)
T 4hat_C 468 HNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYP 528 (1023)
T ss_dssp HHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHH
Confidence 345667999999998865543333445678888888864 23456677889986553
No 80
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=35.12 E-value=7.2 Score=37.30 Aligned_cols=57 Identities=5% Similarity=0.061 Sum_probs=37.7
Q ss_pred CcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccch
Q psy10739 7 RVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQK 65 (187)
Q Consensus 7 ~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~ 65 (187)
++-++.-+||+++..+.--..+-+.+ ..+++.|++.|.+.+..|+..|||++.....
T Consensus 513 ~~~v~~~~~~~lgry~~~~~~~~~~l--~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 513 KAVVASDIMYVVGQYPRFLKAHWNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34455579999997763211222211 2346677778888889999999999866644
No 81
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=33.64 E-value=37 Score=24.58 Aligned_cols=52 Identities=17% Similarity=0.246 Sum_probs=38.0
Q ss_pred CCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739 5 SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS 63 (187)
Q Consensus 5 ~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~ 63 (187)
++....+.+-+|+|.+ +.+..+++.=| ..|-+++...++.-++|..+-++..
T Consensus 32 ~~s~~~~F~yAw~Lv~--S~~~~d~~~GI-----~lLe~l~~~~~p~~~Rd~lY~LAvg 83 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVR--TRYNDDIRKGI-----VLLEELLPKGSKEEQRDYVFYLAVG 83 (126)
T ss_dssp CCCHHHHHHHHHHHTT--SSSHHHHHHHH-----HHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHc--CCCHHHHHHHH-----HHHHHHHhcCCcchHHHHHHHHHHH
Confidence 4567788999999988 55677766553 4566666765577889998887766
No 82
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=32.39 E-value=15 Score=35.50 Aligned_cols=62 Identities=18% Similarity=0.139 Sum_probs=44.5
Q ss_pred CCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccc
Q psy10739 3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQ 64 (187)
Q Consensus 3 L~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t 64 (187)
+.++++.+|+.|.=.|.|.......+...-....+++.|++.|.+.+..+|..|+-+++...
T Consensus 15 l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~ 76 (1230)
T 1u6g_C 15 MTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLV 76 (1230)
T ss_dssp TTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred cCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 46889999999988887765433222211122356788999999999999999999886653
No 83
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=32.10 E-value=45 Score=26.61 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=19.7
Q ss_pred hHHHHHHhhcCChhhhhhhhcccc
Q psy10739 38 LPYIVNILENGDAKVQKEAAINTK 61 (187)
Q Consensus 38 ~p~l~~~l~~~~~~vr~ea~w~l~ 61 (187)
.+.|..++...+..||..++..++
T Consensus 196 ~~~L~~Ll~D~d~~VR~~aa~~l~ 219 (244)
T 1lrv_A 196 GDDLLELLHDPDWTVRLAAVEHAS 219 (244)
T ss_dssp GGGGGGGGGCSSHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHcCC
Confidence 466777788889999999988876
No 84
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=29.55 E-value=8.4 Score=36.16 Aligned_cols=52 Identities=19% Similarity=0.170 Sum_probs=35.8
Q ss_pred CCcchhHHHHHHHHHhcCC---ChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccch
Q psy10739 6 SRVNIVKEAAWTISNITAG---NSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQK 65 (187)
Q Consensus 6 ~~~~i~kea~w~lSNI~aG---~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~ 65 (187)
+++.++..|||+|+.++.- ...... .++|.|+..| + +.|+..|||++.....
T Consensus 518 ~~~~vr~~a~~~l~~~~~~l~~~~~~l~-----~vl~~l~~~l-~--~~v~~~A~~al~~l~~ 572 (971)
T 2x1g_F 518 LNVKLLGTALETMGSYCNWLMENPAYIP-----PAINLLVRGL-N--SSMSAQATLGLKELCR 572 (971)
T ss_dssp SCHHHHHHHHHHHHHTHHHHC----CHH-----HHHHHHHHHH-H--SSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhcCHHHHH-----HHHHHHHHHh-C--hHHHHHHHHHHHHHHH
Confidence 4678999999999988732 222222 2456666666 2 7899999999876643
No 85
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=28.49 E-value=32 Score=27.19 Aligned_cols=57 Identities=16% Similarity=0.250 Sum_probs=36.9
Q ss_pred CCCCCcchhHHHHHHHHHhcC--CCh-hhHHHHHHcCChHHHHHHhhcCChhhhhhhhccc
Q psy10739 3 LSSSRVNIVKEAAWTISNITA--GNS-RQIDHVIQEGLLPYIVNILENGDAKVQKEAAINT 60 (187)
Q Consensus 3 L~~~~~~i~kea~w~lSNI~a--G~~-~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l 60 (187)
|.|.++.++-+++=.|+++.. |.. -..+..+. .+++.+..+|.+.+..||.+|.=++
T Consensus 148 l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~ 207 (278)
T 4ffb_C 148 FEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLI 207 (278)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 456667777777777776632 221 22333332 3566788888999999999887654
No 86
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=27.07 E-value=21 Score=21.52 Aligned_cols=13 Identities=15% Similarity=0.570 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHhc
Q psy10739 10 IVKEAAWTISNIT 22 (187)
Q Consensus 10 i~kea~w~lSNI~ 22 (187)
+.--+.|+|||+-
T Consensus 26 ~L~PagWVLshL~ 38 (46)
T 1v54_M 26 FLLPAGWVLYHLD 38 (46)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHhhHHHHHHHHH
Confidence 3445789999973
No 87
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=26.90 E-value=50 Score=26.44 Aligned_cols=62 Identities=24% Similarity=0.301 Sum_probs=41.9
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccccccchhhh
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMSQKVAA 68 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~t~~~~ 68 (187)
||.|++ ..+-.-+|+=|.|=...|...| .-++|.|+.+|...+--||.-|+=++...+...|
T Consensus 152 mltskd---~~Dkl~aLnFi~alGen~~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np 213 (253)
T 2db0_A 152 MLSSKN---REDKLTALNFIEAMGENSFKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLND 213 (253)
T ss_dssp HTSCSS---HHHHHHHHHHHHTCCTTTHHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH
T ss_pred HhcCCC---hHHHHHHHHHHHHHhccCcccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH
Confidence 455544 3333445666666667777777 4578889999988888888888777766644333
No 88
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=25.38 E-value=1.4e+02 Score=24.39 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=51.1
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccccc
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKMS 63 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~~~ 63 (187)
||+..+..++-.|..+|-++.-+-+.-....+=..++|.++.++.+.+-+|---|.-|+...
T Consensus 41 LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~L 102 (265)
T 3b2a_A 41 LAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYL 102 (265)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 67777889999999999999877556666666677899999999999999888888887544
No 89
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=24.98 E-value=37 Score=30.23 Aligned_cols=54 Identities=24% Similarity=0.244 Sum_probs=40.7
Q ss_pred CcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhccc
Q psy10739 7 RVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINT 60 (187)
Q Consensus 7 ~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l 60 (187)
++.+.-=||--|+..+.--+.-...+-+-|.=..++.+|.|.|.+||+||.-|+
T Consensus 418 d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~av 471 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKAT 471 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred CcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 345555677777777765455454444678888999999999999999999886
No 90
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=23.90 E-value=42 Score=31.21 Aligned_cols=54 Identities=4% Similarity=0.123 Sum_probs=34.6
Q ss_pred CcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHh---hcCChhhhhhhhccccccch
Q psy10739 7 RVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNIL---ENGDAKVQKEAAINTKMSQK 65 (187)
Q Consensus 7 ~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l---~~~~~~vr~ea~w~l~~~t~ 65 (187)
+-..+.=|+|+++-|+.|-.+.. ...++.++..| ..++..+|..+||+++--+.
T Consensus 462 ~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~ 518 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSE 518 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHH
T ss_pred chHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 33456668999999998854322 22334444433 33467899999999865433
No 91
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=22.77 E-value=94 Score=26.26 Aligned_cols=55 Identities=7% Similarity=-0.081 Sum_probs=44.4
Q ss_pred CCCCCCcchhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHhhcCChhhhhhhhcccc
Q psy10739 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTK 61 (187)
Q Consensus 2 lL~~~~~~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l~~~~~~vr~ea~w~l~ 61 (187)
.|.|.++.|+|-|+.++.++.--.++.++ +++..+-+++...++-|+--|.=++.
T Consensus 147 ~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ll~d~n~~V~~~Al~lL~ 201 (355)
T 3tjz_B 147 AIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEAASSDNIMVQYHALGLLY 201 (355)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 36788999999999999999988777553 68999999999888888865544443
No 92
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=22.42 E-value=45 Score=31.15 Aligned_cols=50 Identities=8% Similarity=0.129 Sum_probs=29.8
Q ss_pred chhHHHHHHHHHhcCCChhhHHHHHHcCChHHHHHHh---h--cCChhhhhhhhcccccc
Q psy10739 9 NIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNIL---E--NGDAKVQKEAAINTKMS 63 (187)
Q Consensus 9 ~i~kea~w~lSNI~aG~~~qiq~vi~~~~~p~l~~~l---~--~~~~~vr~ea~w~l~~~ 63 (187)
..+.=|+++++-|+.|-..... ..+|.++.+| . ..+..||..|||+++--
T Consensus 479 ~~~eaal~~l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~ 533 (971)
T 2x1g_F 479 TKLEACIYSFQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSY 533 (971)
T ss_dssp HHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhcChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHH
Confidence 3555688899999988654432 2233333332 2 24789999999998644
Done!