RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10739
(187 letters)
>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular
trafficking and secretion].
Length = 526
Score = 79.5 bits (196), Expect = 1e-17
Identities = 42/121 (34%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 62 MSQKVAAIDRKASFKNAGK-SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEE 120
+ + R+ +FK G+ S DE+RR+R E VELRK +++ L KRRN+ + E E
Sbjct: 1 STSRFVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAES 60
Query: 121 NVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVV 180
+ +E +P++ + + S + + ++ A RK+LSKE PPI +I+AGVV
Sbjct: 61 SFIPME----QQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVV 116
Query: 181 P 181
P
Sbjct: 117 P 117
Score = 68.0 bits (166), Expect = 1e-13
Identities = 34/65 (52%), Positives = 46/65 (70%), Gaps = 2/65 (3%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA--AI 58
SLLSS + NI KEA WTISNITAGN+ QI VI L+P ++++L + + K++KEA AI
Sbjct: 334 SLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAI 393
Query: 59 NTKMS 63
+ S
Sbjct: 394 SNATS 398
Score = 36.0 bits (83), Expect = 0.008
Identities = 14/56 (25%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 2 LLSSSRVNIVK-EAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
+ + ++++ EAAW ++NI +G ++Q V+ G +P + +L + + V+++A
Sbjct: 122 FMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQA 177
Score = 35.6 bits (82), Expect = 0.009
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
L+ S ++ +A W IS ++ G + +I V+ G+ +V +L + AK+Q A
Sbjct: 251 LIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPA 305
Score = 35.6 bits (82), Expect = 0.011
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEA 56
LLS I A ++ NI G+ Q +I G L ++L + ++KEA
Sbjct: 293 LLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEA 347
Score = 34.5 bits (79), Expect = 0.025
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSR---QIDHVIQEGLLPYIVNILENGDAKVQKEAAI 58
LLSS+ I KEA W ISN T+G I +++ +G + + ++L+ D K+ + A
Sbjct: 377 LLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALD 436
Query: 59 NTKMSQKVAAIDRKASFKN 77
+ KV DR KN
Sbjct: 437 AIENILKVGEQDRLRYGKN 455
Score = 34.1 bits (78), Expect = 0.035
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILE 46
LLSS+ ++ ++A W + NI + D+V+Q G L ++ +L
Sbjct: 164 QLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLL 209
>gnl|CDD|201951 pfam01749, IBB, Importin beta binding domain. This family consists
of the importin alpha (karyopherin alpha), importin beta
(karyopherin beta) binding domain. The domain mediates
formation of the importin alpha beta complex; required
for classical NLS import of proteins into the nucleus,
through the nuclear pore complex and across the nuclear
envelope. Also in the alignment is the NLS of importin
alpha which overlaps with the IBB domain.
Length = 97
Score = 69.3 bits (170), Expect = 7e-16
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 71 RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNI-DQLDEIEEENVTVIEPTC 129
R+ S+KN G+ +EMRR+R E+ VELRK +++QL KRRN+ ++ E + +
Sbjct: 9 RRKSYKNKGRDAEEMRRRREEVGVELRKNKREEQLLKRRNVGLPPEDGAEPESELDGSSD 68
Query: 130 MSPIKMTVPEMIEGMKSSNP 149
+ + +P M++G+ S +P
Sbjct: 69 ADQLSLELPVMVQGVNSDDP 88
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats. An
approximately 40 amino acid long tandemly repeated
sequence motif first identified in the Drosophila
segment polarity gene armadillo; these repeats were
also found in the mammalian armadillo homolog
beta-catenin, the junctional plaque protein
plakoglobin, the adenomatous polyposis coli (APC) tumor
suppressor protein, and a number of other proteins. ARM
has been implicated in mediating protein-protein
interactions, but no common features among the target
proteins recognized by the ARM repeats have been
identified; related to the HEAT domain; three
consecutive copies of the repeat are represented by
this alignment model.
Length = 120
Score = 56.6 bits (137), Expect = 7e-11
Identities = 27/57 (47%), Positives = 40/57 (70%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
SLLSSS N+ +EAAW +SN++AGN+ I V++ G LP +V +L++ D +V K A
Sbjct: 14 SLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAAL 70
Score = 53.5 bits (129), Expect = 1e-09
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LL S +VK A W + N+ AG V++ G +P +VN+L++ + +QK A
Sbjct: 57 LLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNAT 112
Score = 32.3 bits (74), Expect = 0.050
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 30 DHVIQEGLLPYIVNILENGDAKVQKEAA 57
+ VIQ G LP +V++L + D VQ+EAA
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAA 28
Score = 29.6 bits (67), Expect = 0.47
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 1 SLLSSSRVNIVKEAAWTISNITA 23
+LL SS +I K A +SN+ +
Sbjct: 98 NLLDSSNEDIQKNATGALSNLAS 120
>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat. Approx. 40
amino acid repeat. Tandem repeats form super-helix of
helices that is proposed to mediate interaction of
beta-catenin with its ligands. CAUTION: This family
does not contain all known armadillo repeats.
Length = 41
Score = 36.7 bits (86), Expect = 3e-04
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 25 NSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+ VI+ G +P +V +L + D +VQ+EAA
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAA 33
Score = 35.1 bits (82), Expect = 0.001
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 1 SLLSSSRVNIVKEAAWTISNITA 23
LLSS + +EAAW +SN+ A
Sbjct: 19 QLLSSPDEEVQEEAAWALSNLAA 41
>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats. Approx. 40
amino acid repeat. Tandem repeats form superhelix of
helices that is proposed to mediate interaction of
beta-catenin with its ligands. Involved in transducing
the Wingless/Wnt signal. In plakoglobin arm repeats
bind alpha-catenin and N-cadherin.
Length = 41
Score = 33.2 bits (77), Expect = 0.005
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 1 SLLSSSRVNIVKEAAWTISNITA 23
LL S +VKEAAW +SN+++
Sbjct: 19 ELLKSEDEEVVKEAAWALSNLSS 41
Score = 32.4 bits (75), Expect = 0.012
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 25 NSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+ V+ G LP +V +L++ D +V KEAA
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAA 33
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat. The HEAT repeat family is
related to armadillo/beta-catenin-like repeats (see
pfam00514). These EZ repeats are found in subunits of
cyanobacterial phycocyanin lyase and other proteins and
probably carry out a scaffolding role.
Length = 55
Score = 32.0 bits (73), Expect = 0.020
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 12 KEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAI 58
+ AA + + G + + E LLP ++ +L++ D +V++ AA
Sbjct: 5 EAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAW 50
>gnl|CDD|233149 TIGR00845, caca, sodium/calcium exchanger 1. The Ca2+:Cation
Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA
family are found ubiquitously, having been identified in
animals, plants, yeast, archaea and widely divergent
bacteria.All of the characterized animal proteins
catalyze Ca2+:Na+ exchange although some also transport
K+. The NCX1 plasma membrane protein exchanges 3 Na+ for
1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+
antiport but may also catalyze Na+:H+ antiport. All
remaining well-characterized members of the family
catalyze Ca2+:H+ exchange.This model is specific for the
eukaryotic sodium ion/calcium ion exchangers of the Caca
family [Transport and binding proteins, Other].
Length = 928
Score = 30.1 bits (68), Expect = 0.82
Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 9/123 (7%)
Query: 46 ENGDAKVQKEAAINTKMSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQL 105
E K + E ++ KM + K FDE RR+ + EL++ H D
Sbjct: 276 EGDRPKSKTEIEMDGKMVNSHVDNFLDGALVLEVKEFDEARREMIRILKELKQKHPD--- 332
Query: 106 FKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSK 165
++++QL+E+ V + + ++ ++ G + ++ A +ARK +S
Sbjct: 333 ---KDLEQLEEMANYQVLSRQQKSRAFYRIQATRLMTG---AGNILKKHAADAARKAVSM 386
Query: 166 ERH 168
Sbjct: 387 HEV 389
>gnl|CDD|177753 PLN00149, PLN00149, potassium transporter; Provisional.
Length = 779
Score = 28.3 bits (63), Expect = 2.8
Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 36/128 (28%)
Query: 84 EMRRKRCEMNVELRKAHKDDQLFKR-----------------RNIDQLDEIEEENVTVIE 126
E R RC + R HKDD F++ + +E E+E +TV+
Sbjct: 592 EYRLYRCIVRYGYRDVHKDDMEFEKDLVCSIAEFIRSEKPEPNGAPENEEGEDERMTVVG 651
Query: 127 PTCMSP--IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKER-------HPPID----- 172
I++ + + + ++R I RS K+R P ID
Sbjct: 652 TCSTHLEGIQLREDDSDKQEPAGTSELREI--RSPPVSRPKKRVRFVVPESPKIDRGARE 709
Query: 173 ---ELIEA 177
EL+EA
Sbjct: 710 ELQELMEA 717
>gnl|CDD|234812 PRK00694, PRK00694, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase; Validated.
Length = 606
Score = 27.5 bits (61), Expect = 5.4
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 115 DEIEEENVTVIE--PTCMSPIKMTVPEMIEGMKSSNPKMRMIATRS-ARKMLSKERHPPI 171
D IE + +E C K+ +++ MKSSNPK+ + A R A+ + ++ P+
Sbjct: 180 DTIEGMVYSALEYIEVC---EKLDYRDVVFSMKSSNPKVMVAAYRQLAKDLDARGWLYPL 236
Query: 172 D-ELIEAG 178
+ EAG
Sbjct: 237 HLGVTEAG 244
>gnl|CDD|205862 pfam13686, DrsE_2, DsrE/DsrF/DrsH-like family. DsrE is a small
soluble protein involved in intracellular sulfur
reduction. The family also includes YrkE proteins.
Length = 156
Score = 26.4 bits (59), Expect = 5.9
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 144 MKSSNPKMRMIATRSARKMLSKERHPPIDELIEA 177
+ S M + T+ +K++ K+ P ++ELIE
Sbjct: 74 LPLSKMNMAGMGTKMMKKVMKKKGVPSLEELIEM 107
>gnl|CDD|177891 PLN02249, PLN02249, indole-3-acetic acid-amido synthetase.
Length = 597
Score = 26.9 bits (59), Expect = 7.3
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 65 KVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTV 124
+V I R F N+ F +RRK +++E K + D N +L + E+ V
Sbjct: 411 RVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVENASRL--LAEQGTRV 468
Query: 125 IEPTCMSPIKMTVP 138
IE T + K T+P
Sbjct: 469 IEYTSYAETK-TIP 481
>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase
conserved domain.
Length = 373
Score = 27.0 bits (60), Expect = 7.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 150 KMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 184
++R I T KM + I+E E G++P V
Sbjct: 164 ELREIPTDENGKMRGMDLEKAIEEDKENGLIPFFV 198
>gnl|CDD|221732 pfam12719, Cnd3, Nuclear condensing complex subunits, C-term
domain. The Cnd1-3 proteins are the three non-SMC
(structural maintenance of chromosomes) proteins that go
to make up the mitotic condensation complex along with
the two SMC protein families, XCAP-C and XCAP-E, (or in
the case of fission yeast, Cut3 and Cut14). The
five-member complex seems to be conserved from yeasts to
vertebrates. This domain is the C-terminal,
cysteine-rich domain of Cnd3. The complex shuttles
between the nucleus, during mitosis, and the cytoplasm
during the rest of the cycle. Thus this family is made
up of the C-termini of XCAP-Gs, Ycg1 and Ycs5 members.
Length = 302
Score = 26.5 bits (59), Expect = 8.4
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 140 MIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEA 177
+ + + S +P+++ IA K+L R +L+E
Sbjct: 122 LYKFLDSEDPEVQAIAAEGLCKLLLAGRLTDEPDLLER 159
>gnl|CDD|234602 PRK00055, PRK00055, ribonuclease Z; Reviewed.
Length = 270
Score = 26.7 bits (60), Expect = 8.6
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 165 KERHPPIDELIEAGVVPICVFQR 187
K ++L GV P +F +
Sbjct: 117 KPGKLDAEKLKALGVPPGPLFGK 139
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.130 0.357
Gapped
Lambda K H
0.267 0.0877 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,377,154
Number of extensions: 856729
Number of successful extensions: 971
Number of sequences better than 10.0: 1
Number of HSP's gapped: 968
Number of HSP's successfully gapped: 48
Length of query: 187
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 96
Effective length of database: 6,901,388
Effective search space: 662533248
Effective search space used: 662533248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.1 bits)