RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10739
(187 letters)
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 107 bits (267), Expect = 1e-27
Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 6/132 (4%)
Query: 59 NTKMSQKVAAIDRKASFKNAGK-SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLD-- 115
+ K R+ +FKN G+ S DE+RR+R VELRKA +D+ L KRRN
Sbjct: 5 TDSSTSKFVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDG 64
Query: 116 ---EIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPID 172
+ E+E+ + S ++ +P+M + + S + + ++ AT R++LS+E PPID
Sbjct: 65 ADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPID 124
Query: 173 ELIEAGVVPICV 184
+I+AGVVP V
Sbjct: 125 VVIQAGVVPRLV 136
Score = 63.9 bits (155), Expect = 1e-12
Identities = 32/57 (56%), Positives = 39/57 (68%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LLSS + NI KEA WTISNITAGN+ QI VI L+P +V +LE + K +KEA
Sbjct: 348 LLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEAC 404
Score = 50.8 bits (121), Expect = 5e-08
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LLS + A + NI GN Q VI G+LP + +L + ++KEA
Sbjct: 307 LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEAC 362
Score = 50.4 bits (120), Expect = 6e-08
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
L +S++ ++++ A WT+SN+ G Q D + LP + ++ + D + +A
Sbjct: 222 GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDAC 278
Score = 50.0 bits (119), Expect = 9e-08
Identities = 11/57 (19%), Positives = 27/57 (47%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LL + V + ++A W + N+ ++ D+V+Q + I+ + + + + A
Sbjct: 180 QLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTAT 236
Score = 48.9 bits (116), Expect = 3e-07
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+ + + EAAW ++NI +G S Q V+ +P + +L G +V+++A
Sbjct: 139 MRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAI 194
Score = 46.9 bits (111), Expect = 1e-06
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
L+ S + +A W IS ++ G I VI + +V +L + VQ A
Sbjct: 265 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPAL 320
Score = 41.9 bits (98), Expect = 5e-05
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 2 LLSSSRVNIVKEAAWTISNITAG---NSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LL + KEA W ISN ++G I +++ +G + + ++LE D ++ +
Sbjct: 391 LLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTL 449
Score = 37.7 bits (87), Expect = 0.001
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 2 LLSSSRVNIVKEAAWTISNITA-GNSRQIDHVIQEGLLPYIVNILENGD-AKVQKEAA 57
L+S + A I + + ID VIQ G++P +V + +Q EAA
Sbjct: 95 QLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAA 152
Score = 27.3 bits (60), Expect = 3.2
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 11/68 (16%)
Query: 1 SLLSSSRVNIVKEAAWTISNI-----------TAGNSRQIDHVIQEGLLPYIVNILENGD 49
LL + I++ + NI + D + + G + I N +N +
Sbjct: 435 DLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEN 494
Query: 50 AKVQKEAA 57
K+ ++A
Sbjct: 495 DKIYEKAY 502
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 86.6 bits (214), Expect = 3e-20
Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 83 DEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIE 142
R E A + Q ++ D+ + + + +V ++++
Sbjct: 8 SSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMA---DIGSNQGTVNWSVEDIVK 64
Query: 143 GMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 184
G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P V
Sbjct: 65 GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFV 106
Score = 67.0 bits (163), Expect = 1e-13
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
SLL++ + NI KEA WT+SNITAG QI V+ GL+P++V +L D K QKEAA
Sbjct: 323 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 379
Score = 57.3 bits (138), Expect = 3e-10
Identities = 20/57 (35%), Positives = 26/57 (45%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LL ++ + IV A I NI G Q VI G L ++L N +QKEA
Sbjct: 281 KLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 337
Score = 49.2 bits (117), Expect = 2e-07
Identities = 31/191 (16%), Positives = 69/191 (36%), Gaps = 27/191 (14%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTK 61
L + I E+AW ++NI +G S Q V+ G +P +++L + A + ++A
Sbjct: 109 LGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAV---- 164
Query: 62 MSQKVAAIDRKASFKNAGKSFDEMRRKRCEMN-----VELRKAHKDDQL---FKRRNIDQ 113
+ N R + + L L + R
Sbjct: 165 -----------WALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 213
Query: 114 LDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDE 173
L + + ++ +P ++ + ++P++ + + L+ + I+
Sbjct: 214 LSNLCRNK---NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY-LTDGPNERIEM 269
Query: 174 LIEAGVVPICV 184
+++ GVVP V
Sbjct: 270 VVKKGVVPQLV 280
Score = 48.9 bits (116), Expect = 2e-07
Identities = 14/57 (24%), Positives = 32/57 (56%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LL + ++ ++ W IS +T G + +I+ V+++G++P +V +L + + A
Sbjct: 239 RLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 295
Score = 46.5 bits (110), Expect = 1e-06
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAI 58
SLL+S +I ++A W + NI S D VI+ G + ++ +L D +
Sbjct: 150 SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYL 207
Score = 43.9 bits (103), Expect = 1e-05
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITA-GNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+LS + KEAAW I+N T+ G QI +++ G++ ++N+L D K+ +
Sbjct: 365 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 422
Score = 40.4 bits (94), Expect = 2e-04
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 1 SLLSSSRVNIVKE-----AAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKE 55
+LL+ ++ + WT+SN+ + E +LP +V +L + D +V +
Sbjct: 192 ALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLAD 251
Query: 56 AA 57
+
Sbjct: 252 SC 253
Score = 34.2 bits (78), Expect = 0.018
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 1 SLLSSSRVNIVKEAAWTISNI------TAGNSRQIDHVIQEGLLPYIVNILENGDAKVQK 54
+LLS+ I++ ISNI + + + G L I + + + V K
Sbjct: 408 NLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYK 467
Query: 55 EAA 57
+
Sbjct: 468 ASL 470
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 77.7 bits (192), Expect = 3e-18
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LLSS I++EA W +SNI +G + QI VI G LP +V +L + + ++ +EA
Sbjct: 103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 159
Score = 71.9 bits (177), Expect = 5e-16
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LLSS I++EA W +SNI +G + QI VI G LP +V +L + + ++ +EA
Sbjct: 61 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 117
Score = 59.2 bits (144), Expect = 2e-11
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
L+S ++ A +S I +G + QI VI G LP +V +L + + ++ +EA
Sbjct: 20 QLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 75
Score = 58.8 bits (143), Expect = 3e-11
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LLSS I++EA W +SNI +G + Q V + G L + + + + K+QKEA
Sbjct: 145 QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQ 201
Score = 30.3 bits (69), Expect = 0.23
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 30 DHVIQEGLLPYIVNILENGDAKVQKEAA 57
H LP +V L + D + + A
Sbjct: 6 HHHHHGSELPQMVQQLNSPDQQELQSAL 33
Score = 28.8 bits (65), Expect = 0.87
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 1 SLLSSSRVNIVKEAAWTISNITA 23
L S I KEA + + +
Sbjct: 187 QLQSHENEKIQKEAQEALEKLQS 209
Score = 28.4 bits (64), Expect = 1.1
Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 137 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
+P+M++ + S + + A R + ++ + I +I+AG +P
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQ-IASGGNEQIQAVIDAGALP 57
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 74.6 bits (184), Expect = 9e-17
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LLSS I++EA W +SNI +G + QI VI G LP +V +L + + ++ +EA
Sbjct: 103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 159
Score = 64.2 bits (157), Expect = 6e-13
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LLSS I++EA W +SNI +G + QI VI G LP +V +L + + ++ +EA
Sbjct: 61 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 117
Score = 61.9 bits (151), Expect = 4e-12
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LLSS I++EA W +SNI +G + QI VI G LP +V +L + + ++ +EA
Sbjct: 145 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 201
Score = 59.2 bits (144), Expect = 3e-11
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LLSS I++EA W +SNI +G + Q V + G L + + + + K+QKEA
Sbjct: 187 QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQ 243
Score = 58.1 bits (141), Expect = 1e-10
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
L+S + A S I + + QI VI G LP +V +L + + ++ +EA
Sbjct: 19 QQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 75
Score = 43.4 bits (103), Expect = 1e-05
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 137 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 184
+P+M + + S + + ++ ATR + + + + I +I+AG +P V
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQ-ILSDGNEQIQAVIDAGALPALV 60
Score = 31.1 bits (71), Expect = 0.16
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 29 IDHVIQEGLLPYIVNILENGDAKVQKEAA 57
H LP + L + D + Q A
Sbjct: 5 HHHHHHGSELPQMTQQLNSDDMQEQLSAT 33
Score = 28.8 bits (65), Expect = 0.88
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 2 LLSSSRVNIVKEAAWTISNITA 23
L S I KEA + + +
Sbjct: 230 LQSHENEKIQKEAQEALEKLQS 251
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 75.3 bits (185), Expect = 2e-16
Identities = 29/57 (50%), Positives = 39/57 (68%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LLSS + +I KEA WTISNITAGN QI VI + P +++IL+ + + +KEAA
Sbjct: 283 HLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339
Score = 61.4 bits (149), Expect = 1e-11
Identities = 13/57 (22%), Positives = 26/57 (45%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LL + +V A + NI G+ Q ++ L ++++L + ++KEA
Sbjct: 241 ELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEAC 297
Score = 54.9 bits (132), Expect = 2e-09
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 113 QLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPID 172
E + N+ + + +MIE + S +P+ ++ AT+ RK+LSKE +PPID
Sbjct: 4 GFHEAQINNMEMAPGG------VITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPID 57
Query: 173 ELI-EAGVVPICV 184
E+I GVV V
Sbjct: 58 EVISTPGVVARFV 70
Score = 52.2 bits (125), Expect = 1e-08
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LL S +++ +A W +S ++ G + +I VI G+ +V +L + D KV A
Sbjct: 200 LLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPAL 255
Score = 50.7 bits (121), Expect = 6e-08
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
L + E+AW ++NI +GNS Q VIQ G +P + +L + VQ++A
Sbjct: 73 LKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAV 128
Score = 50.3 bits (120), Expect = 8e-08
Identities = 12/56 (21%), Positives = 22/56 (39%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+R+ + + A W +SN+ G S + L + +L D V +A
Sbjct: 158 FSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADAC 213
Score = 49.1 bits (117), Expect = 2e-07
Identities = 13/60 (21%), Positives = 28/60 (46%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINT 60
LLSS ++ ++A W + NI ++ D+V+ +LP ++ + + A+
Sbjct: 114 ELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWA 173
Score = 45.3 bits (107), Expect = 4e-06
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSR-QIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+L ++ KEAAW I+N T+G S QI ++++ G + + ++L D+K+ + A
Sbjct: 326 ILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVAL 382
Score = 35.6 bits (82), Expect = 0.007
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 2 LLSSSRVNIVKEAAWTISNI-TAGNSRQIDHVIQE-GLLPYIVNILENGD-AKVQKEAA 57
++ S A + + + ID VI G++ V L+ + +Q E+A
Sbjct: 28 MIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESA 86
Score = 27.2 bits (60), Expect = 4.1
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG 48
LL+ IV+ A + NI Q G+ PY I E
Sbjct: 368 DLLTVMDSKIVQVALNGLENI-LRLGEQEAKRNGTGINPYCALIEEAY 414
>1qgk_B Protein (importin alpha-2 subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.50A {Homo sapiens}
Length = 44
Score = 59.8 bits (145), Expect = 4e-13
Identities = 27/42 (64%), Positives = 31/42 (73%)
Query: 70 DRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNI 111
R FKN GK EMRR+R E+NVELRKA KDDQ+ KRRN+
Sbjct: 2 ARLHRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNV 43
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 60.2 bits (146), Expect = 3e-11
Identities = 12/56 (21%), Positives = 26/56 (46%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
L S + IV A T+ N++A N + + + G + + N++ + + +A
Sbjct: 271 HLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSA 326
Score = 46.0 bits (109), Expect = 2e-06
Identities = 7/60 (11%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 1 SLLSSSRVNIVKEAAWTISNIT---AGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
++ + I++ + N++ A N + + L ++ L++ + A
Sbjct: 225 YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 284
Score = 44.1 bits (104), Expect = 8e-06
Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 8 VNIVKEAAWTISNITAGNSRQIDHVIQ-EGLLPYIVNILENGDAKVQKEAA 57
+ + + A ++N+T G+ + +G + +V L++ +Q+ A
Sbjct: 98 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIA 148
Score = 39.1 bits (91), Expect = 4e-04
Identities = 7/59 (11%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQE-GLLPYIVNILENG-DAKVQKEAA 57
+ L S ++ + A + N++ ++E G + ++ K
Sbjct: 134 AQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 192
Score = 37.9 bits (88), Expect = 0.001
Identities = 6/68 (8%), Positives = 23/68 (33%), Gaps = 12/68 (17%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNIL-----------ENGD 49
+ + + + + A + + + + + + G L I +L ++
Sbjct: 39 NPMPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYS 97
Query: 50 AKVQKEAA 57
+++ A
Sbjct: 98 ITLRRYAG 105
Score = 34.1 bits (78), Expect = 0.017
Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSR-QIDHVIQEGLLPYIVNILENGDAKVQKEAAINT 60
L + + +K + N++A + + D +G L ++V L +
Sbjct: 179 ALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESG 238
Score = 33.3 bits (76), Expect = 0.033
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNS---RQIDHVIQEGLLP 39
+L+ S I +A + N+ A + + + LP
Sbjct: 312 NLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLP 353
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 56.9 bits (137), Expect = 4e-10
Identities = 12/57 (21%), Positives = 26/57 (45%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
L S + IV A T+ N++A N + + + G + + N++ + + +A
Sbjct: 386 QHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSA 442
Score = 43.0 bits (101), Expect = 2e-05
Identities = 9/58 (15%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSR-QIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+ + + A ++N+T G+ + +G + +V L++ +Q+ A
Sbjct: 207 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIA 264
Score = 43.0 bits (101), Expect = 2e-05
Identities = 7/60 (11%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 1 SLLSSSRVNIVKEAAWTISNIT---AGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
++ + I++ + N++ A N + + L ++ L++ + A
Sbjct: 341 YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 400
Score = 37.6 bits (87), Expect = 0.001
Identities = 7/59 (11%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQE-GLLPYIVNILENG-DAKVQKEAA 57
+ L S ++ + A + N++ ++E G + ++ K
Sbjct: 250 AQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 308
Score = 31.5 bits (71), Expect = 0.14
Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQE-GLLPYIVNILENGDAKVQKEAAINT 60
L + + +K + N++A + + G L ++V L +
Sbjct: 295 ALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESG 354
Score = 29.9 bits (67), Expect = 0.45
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNS 26
+L+ S I +A + N+ A
Sbjct: 428 NLIHSKHKMIAMGSAAALRNLMANRP 453
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 54.3 bits (130), Expect = 4e-09
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LL S NI + AA + + A + + + EG + +L + + V AA
Sbjct: 601 LLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAA 655
Score = 53.9 bits (129), Expect = 5e-09
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG--DAKVQKEAA 57
LL S +N+V AA +SN+T N + V Q G + +V + + + A
Sbjct: 406 QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 464
Score = 52.3 bits (125), Expect = 2e-08
Identities = 11/57 (19%), Positives = 21/57 (36%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
++L S +++ A T+ N+ V G L +V +L + K
Sbjct: 241 NMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 297
Score = 52.0 bits (124), Expect = 2e-08
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
L+ +V+ WT+ N++ ++Q EGLL +V +L + D V AA
Sbjct: 367 LHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAA 420
Score = 51.6 bits (123), Expect = 3e-08
Identities = 9/58 (15%), Positives = 21/58 (36%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAI 58
LL + +A + A + ++G +P +V +L Q+ ++
Sbjct: 495 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 552
Score = 48.5 bits (115), Expect = 3e-07
Identities = 9/57 (15%), Positives = 20/57 (35%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+LL+ + V + + + GN ++ G +VNI+ +
Sbjct: 283 ALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 339
Score = 48.5 bits (115), Expect = 4e-07
Identities = 3/57 (5%), Positives = 20/57 (35%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+++ + + + + + S +++ G + + L + ++ +
Sbjct: 325 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 381
Score = 48.1 bits (114), Expect = 4e-07
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 2 LLSSSRVNIVKEAAWTISNITAG---NSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAI 58
L + R +I + A + ++T+ + V LP +V +L +A +
Sbjct: 451 LRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 510
Score = 46.6 bits (110), Expect = 1e-06
Identities = 9/58 (15%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG-DAKVQKEAA 57
LL+ +V +AA + ++ + + + ++ IV ++N D + + +
Sbjct: 157 KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTS 214
Score = 44.6 bits (105), Expect = 6e-06
Identities = 11/57 (19%), Positives = 22/57 (38%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+ R+ + EA +I A + + +P V +L + +Q+ AA
Sbjct: 558 QFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA 614
Score = 44.6 bits (105), Expect = 7e-06
Identities = 10/56 (17%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+ +++ V + + T+ N+ + + + + + G +P +VN+L + V A
Sbjct: 201 MQNTNDVETARCTSGTLHNL-SHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAI 255
Score = 33.1 bits (75), Expect = 0.041
Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LL S + AA + ++ + ++ L + + L + E
Sbjct: 642 LLHSRNEGVATYAAAVLFRMSEDKPQD----YKKRLSVELTSSLFRTEPMTWNETG 693
Score = 32.3 bits (73), Expect = 0.082
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 5 SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+ ++K A + N Q D + +P + +L + D V +AA
Sbjct: 125 AEPSQMLKHAVVNLIN------YQDDAELATRAIPELTKLLNDEDQVVVNKAA 171
Score = 30.0 bits (67), Expect = 0.53
Identities = 12/112 (10%), Positives = 33/112 (29%), Gaps = 7/112 (6%)
Query: 78 AGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSP---IK 134
+GK E ++ E + +Q F + + +D M P +
Sbjct: 47 SGKGNPEDDDVDNQVLYEWEQGF--NQSFNQEQVADIDGQYAMTRAQRVRAAMFPETLDE 104
Query: 135 MTVPEMIEGMKSSNPKMRMIA--TRSARKMLSKERHPPIDELIEAGVVPICV 184
+ + ++ +A ++ + + + D + +P
Sbjct: 105 GMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELT 156
Score = 28.5 bits (63), Expect = 1.4
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 136 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 184
+PE+ + + + + A + LSK+ + +V V
Sbjct: 151 AIPELTKLLNDEDQVVVNKAAVMVHQ-LSKKEASRHAIMRSPQMVSAIV 198
Score = 27.3 bits (60), Expect = 3.5
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 137 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 184
V ++ M+++N T LS R + ++G +P V
Sbjct: 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL-LAIFKSGGIPALV 240
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 53.4 bits (128), Expect = 6e-09
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LL S NI + AA + + A + + + EG + +L + + V AA
Sbjct: 465 LLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAA 519
Score = 52.2 bits (125), Expect = 2e-08
Identities = 11/57 (19%), Positives = 20/57 (35%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+L S +++ A T+ N+ V G L +V +L + K
Sbjct: 105 KMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 161
Score = 51.9 bits (124), Expect = 2e-08
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGN---SRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
L + R +I + A + ++T+ + + V LP +V +L +A
Sbjct: 314 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373
Query: 58 I 58
+
Sbjct: 374 V 374
Score = 51.5 bits (123), Expect = 3e-08
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
L+ +V+ WT+ N++ ++Q EGLL +V +L + D V AA
Sbjct: 231 LHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAA 284
Score = 50.7 bits (121), Expect = 6e-08
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGD--AKVQKEAA 57
LL S +N+V AA +SN+T N + V Q G + +V + + + A
Sbjct: 271 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 328
Score = 50.7 bits (121), Expect = 6e-08
Identities = 9/58 (15%), Positives = 21/58 (36%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAI 58
LL + +A + A + ++G +P +V +L Q+ ++
Sbjct: 359 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 416
Score = 47.6 bits (113), Expect = 6e-07
Identities = 9/56 (16%), Positives = 19/56 (33%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LL+ + V + + + GN ++ G +VNI+ +
Sbjct: 148 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 203
Score = 46.9 bits (111), Expect = 1e-06
Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG-DAKVQKEAA 57
LL+ +V +AA + ++ + + + ++ IV ++N D + + A
Sbjct: 21 KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTA 78
Score = 44.9 bits (106), Expect = 6e-06
Identities = 10/56 (17%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+ +++ V + A T+ N+ + + + + + G +P +V +L + V A
Sbjct: 65 MQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAI 119
Score = 41.5 bits (97), Expect = 8e-05
Identities = 10/57 (17%), Positives = 21/57 (36%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+ R+ + E +I A + + +P V +L + +Q+ AA
Sbjct: 422 QFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA 478
Score = 39.9 bits (93), Expect = 2e-04
Identities = 3/58 (5%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 1 SLLSSSRVNIVKE-AAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+++ + + + + + + S +++ G + + L + ++ +
Sbjct: 189 NIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 245
Score = 38.8 bits (90), Expect = 7e-04
Identities = 7/57 (12%), Positives = 17/57 (29%), Gaps = 3/57 (5%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAI 58
LL S + AA + ++ + + L ++ + A +
Sbjct: 506 LLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTS---SLFRTEPMAWNETADL 559
Score = 32.2 bits (73), Expect = 0.079
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 28 QIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
Q D + +P + +L + D V +AA
Sbjct: 6 QDDAELATRAIPELTKLLNDEDQVVVNKAA 35
Score = 31.1 bits (70), Expect = 0.23
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 137 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 184
+PE+ + + + + A + LSK+ + +V V
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQ-LSKKEASRHAIMRSPQMVSAIV 62
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 53.2 bits (128), Expect = 7e-09
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNS---RQIDHVIQEGLLPYIVNILENGDAKVQKEAAI 58
L + R +I + A + ++T+ + + V LP +V +L +A +
Sbjct: 318 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 377
Score = 53.2 bits (128), Expect = 8e-09
Identities = 11/57 (19%), Positives = 20/57 (35%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+L S +++ A T+ N+ V G L +V +L + K
Sbjct: 108 KMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 164
Score = 52.1 bits (125), Expect = 2e-08
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILE--NGDAKVQKEAA 57
LL S +N+V AA +SN+T N + V Q G + +V + + + A
Sbjct: 273 QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 331
Score = 52.1 bits (125), Expect = 2e-08
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LL S NI + AA + + A + + + EG + +L + + V AA
Sbjct: 468 LLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAA 522
Score = 51.7 bits (124), Expect = 2e-08
Identities = 9/58 (15%), Positives = 21/58 (36%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAI 58
LL + +A + A + ++G +P +V +L Q+ ++
Sbjct: 362 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 419
Score = 49.4 bits (118), Expect = 2e-07
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
L+ +V+ WT+ N++ ++Q EGLL +V +L + D V AA
Sbjct: 234 LHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAA 287
Score = 48.2 bits (115), Expect = 4e-07
Identities = 9/57 (15%), Positives = 20/57 (35%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+LL+ + V + + + GN ++ G +VNI+ +
Sbjct: 150 ALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 206
Score = 47.1 bits (112), Expect = 9e-07
Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENG-DAKVQKEAA 57
LL+ +V +AA + ++ + + + ++ IV ++N D + + A
Sbjct: 24 KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTA 81
Score = 45.9 bits (109), Expect = 2e-06
Identities = 10/56 (17%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+ +++ V + A T+ N+ + + + + + G +P +V +L + V A
Sbjct: 68 MQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAI 122
Score = 44.0 bits (104), Expect = 9e-06
Identities = 3/57 (5%), Positives = 20/57 (35%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+++ + + + + + S +++ G + + L + ++ +
Sbjct: 192 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248
Score = 39.0 bits (91), Expect = 5e-04
Identities = 10/57 (17%), Positives = 21/57 (36%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+ R+ + E +I A + + +P V +L + +Q+ AA
Sbjct: 425 QFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA 481
Score = 30.5 bits (69), Expect = 0.27
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 137 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP 181
+PE+ + + + + A + LSK+ + +V
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQ-LSKKEASRHAIMRSPQMVS 62
Score = 29.4 bits (66), Expect = 0.77
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 28 QIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
Q D + +P + +L + D V +AA
Sbjct: 9 QDDAELATRAIPELTKLLNDEDQVVVNKAA 38
Score = 27.4 bits (61), Expect = 2.8
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 2 LLSSSRVNIVKEAAWTISNIT 22
LL S + AA + ++
Sbjct: 509 LLHSRNEGVATYAAAVLFRMS 529
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 49.6 bits (117), Expect = 2e-07
Identities = 10/57 (17%), Positives = 24/57 (42%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
++L + AA + ++ N + V + +P +V +L++ +V A
Sbjct: 55 AMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGAC 111
Score = 38.4 bits (88), Expect = 8e-04
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 10 IVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDA--KVQKEAA 57
V TI+ + A N + + + +V I ++G+ K + AA
Sbjct: 419 TVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAA 468
Score = 38.4 bits (88), Expect = 0.001
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 1 SLLSSSRVNIVKE-AAWTISNITAGNSRQID----HVIQEGLLPYIVNILENGDAKVQKE 55
SLL S+ + E +A I N+ AG + QE L I ++L N +V K
Sbjct: 315 SLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKA 374
Query: 56 AA 57
A+
Sbjct: 375 AS 376
Score = 33.4 bits (75), Expect = 0.032
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQI-DHVIQEGLLPYIVNILENG-DAKVQKEAA 57
LL + + A + NI+ G + + +P +V +L D + +
Sbjct: 97 GLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVIT 155
Score = 31.5 bits (70), Expect = 0.18
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINT 60
LL++ +VK A+ + N+ + +I + +P +V L G + +T
Sbjct: 362 DLLTNEHERVVKAASGALRNLAVDARNKE--LIGKHAIPNLVKNLPGGQQNSSWNFSEDT 419
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 48.3 bits (114), Expect = 3e-07
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LSS A+ I + + V Q G + +V++L + + VQ+ AA
Sbjct: 9 QYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAA 65
Score = 42.5 bits (99), Expect = 3e-05
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 10 IVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
I+ A +T+ N+ A + +L I+N+ + + EAA
Sbjct: 393 ILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440
Score = 35.2 bits (80), Expect = 0.008
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNIL-ENGDAKVQKEAA 57
LL S N+ + AA + N+ ++ ++ + V++L G+A++QK+
Sbjct: 51 DLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLT 108
Score = 29.4 bits (65), Expect = 0.70
Identities = 6/56 (10%), Positives = 21/56 (37%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+ A + N+++ ++ + GL+ ++ ++N A + +
Sbjct: 151 SREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDK 206
Score = 28.6 bits (63), Expect = 1.3
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAI 58
LL S ++V+ A +SN++ V+ + P + +L + I
Sbjct: 338 RLLQSGNSDVVRSGASLLSNMSRHPLLHR--VMGNQVFPEVTRLLTSHTGNTSNSEDI 393
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 46.6 bits (110), Expect = 1e-06
Identities = 6/56 (10%), Positives = 22/56 (39%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
L + + +A + IS + + ++ ++ ++ K++ ++A
Sbjct: 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSA 188
Score = 42.7 bits (100), Expect = 2e-05
Identities = 5/57 (8%), Positives = 21/57 (36%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+ + ++A+ + N+ G+ + G++ +V ++ + +
Sbjct: 174 RAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVL 230
Score = 38.5 bits (89), Expect = 6e-04
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILEN-GDAKVQKEAA 57
L + + AA I + + + V+ G L ++ +L+ V+ +A
Sbjct: 90 YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKAL 146
Score = 26.1 bits (57), Expect = 7.0
Identities = 4/57 (7%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+L+ + + + ++ + + + L + +L + +Q+
Sbjct: 216 ALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELG--LEELLRHRCQLLQQHEE 270
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 42.1 bits (98), Expect = 4e-05
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-EGLLPYIVNILENGDAKVQKEAA 57
L A ++ IT+ + + + ++ L + ++ N VQ
Sbjct: 673 LCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGI 729
Score = 41.4 bits (96), Expect = 8e-05
Identities = 7/57 (12%), Positives = 18/57 (31%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
L + + + AA + N+ + ++ + E+ D + A
Sbjct: 630 YYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACA 686
Score = 38.7 bits (89), Expect = 6e-04
Identities = 5/57 (8%), Positives = 18/57 (31%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAI 58
L+++ + I N+ + + ++ + + + D K +
Sbjct: 716 LIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREV 772
Score = 36.7 bits (84), Expect = 0.003
Identities = 11/55 (20%), Positives = 23/55 (41%)
Query: 3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
L+ + + +E + N G V+QEG + ++ + G K ++ A
Sbjct: 503 LAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHAT 557
Score = 29.0 bits (64), Expect = 1.1
Identities = 5/60 (8%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 1 SLLSSSRVNIVKEAAWTISN--ITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAI 58
+ + A ++ IT ++ ++N+L+ ++ ++
Sbjct: 543 RMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESL 602
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Length = 233
Score = 41.5 bits (97), Expect = 5e-05
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 1 SLLSSSRVN--IVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
S+L + + + AA I + S V Q + ++ +L+ + VQ+
Sbjct: 15 SMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVC 73
Score = 36.5 bits (84), Expect = 0.002
Identities = 8/58 (13%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNIL-ENGDAKVQKEAA 57
LL ++ + + N+ ++ V + +P ++ +L + D + +K+
Sbjct: 59 QLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQIT 116
Score = 35.7 bits (82), Expect = 0.005
Identities = 7/58 (12%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-EGLLPYIVNILENGDAKVQKEAAI 58
+I + N+++ + + + +GL+ +V+ + A Q +
Sbjct: 159 ANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKA 216
>1qgr_B Protein (importin alpha-2 subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
Length = 27
Score = 35.8 bits (82), Expect = 3e-04
Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 86 RRKRCEMNVELRKAHKDDQLFKRRNID 112
RR+R E+NVELRKA KDDQ+ KRRN+
Sbjct: 1 RRRRIEVNVELRKAKKDDQMLKRRNVS 27
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.003
Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 56/148 (37%)
Query: 26 SRQIDHVIQEG----LLPYIVNILEN-GDAKVQK--EAAINTK---MSQKVAAIDRKASF 75
+IDH+I + L + + VQK E + + + R+ S
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 76 K------------NAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVT 123
N + F + R + ++LR+A L + R +NV
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA-----LLELRP--------AKNVL 154
Query: 124 VIEPTCMSPIKMTVPEMIEGM----KSS 147
+ +G+ K+
Sbjct: 155 I-----------------DGVLGSGKTW 165
Score = 36.8 bits (84), Expect = 0.004
Identities = 20/146 (13%), Positives = 45/146 (30%), Gaps = 37/146 (25%)
Query: 57 AINTKMSQKVAAIDRKASF----------KNAGKSFDEMRRKRCEMN-------VELRKA 99
++ + ++ + K ++ R+ N E +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 100 HKD--DQLFKRRNIDQLDEIEEENVTVIEPTCM-------------SPIKMTVPEMI-EG 143
D +K N D+L I E ++ V+EP + I + +I
Sbjct: 340 GLATWDN-WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 144 MKSSNPKMRMIATRSARKMLSKERHP 169
+ S+ ++ + + L E+ P
Sbjct: 399 VIKSDV--MVVVNKLHKYSLV-EKQP 421
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.11
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 66 VAAIDRKASFKNAGKSFDEMRRKRCE--------MNVELR-KAHKDDQLFKRRNIDQLDE 116
+A DR + + + E +RKR + M E R KA KD + + +R +Q+++
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Query: 117 IEEEN 121
+ N
Sbjct: 134 NKINN 138
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats,
hypothetical, unknown function; 2.20A {Thermococcus
onnurineus}
Length = 265
Score = 27.1 bits (59), Expect = 3.2
Identities = 7/50 (14%), Positives = 17/50 (34%)
Query: 114 LDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKML 163
+ E M ++ + I + N K+ + A R+ ++
Sbjct: 54 FVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLV 103
>2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo
4YL)-propionic acid, PSI-2 community, structural
genomics, structure initiative; HET: DI6; 1.97A
{Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A*
Length = 416
Score = 27.1 bits (60), Expect = 3.7
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 138 PEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGV 179
PE I+ + ++ T L + + PP+ L +AGV
Sbjct: 271 PEGIQALAHRGVVATLLPTAFYF--LKETKLPPVVALRKAGV 310
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 27.1 bits (59), Expect = 4.3
Identities = 10/57 (17%), Positives = 22/57 (38%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LS + + WT+S Q + L+ ++ + + + +VQ+ A
Sbjct: 407 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAAC 463
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 26.9 bits (60), Expect = 4.7
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 140 MIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 184
G + N + +I K++ + I E + G VP V
Sbjct: 207 AALGFGTDN--VILIKCNERGKIIPADFEAKILEAKQKGYVPFYV 249
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics,
NYSGXRC, LPS biosynthetic pathway, PSI, protein
structure initiative; 2.00A {Escherichia coli} SCOP:
c.87.1.7
Length = 348
Score = 26.5 bits (59), Expect = 5.0
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 121 NVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMR--MIATRSARKMLSKERHPPIDELIE 176
+ VI P+ + + M+ + +++ P+ ++A R +L R P ++E I
Sbjct: 2 KILVIGPSWVGDMMMSQS-LYRTLQARYPQAIIDVMAPAWCRPLL--SRMPEVNEAIP 56
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 26.5 bits (58), Expect = 5.4
Identities = 5/48 (10%), Positives = 20/48 (41%)
Query: 137 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 184
++E + + NP ++ + L++ + +++ + + V
Sbjct: 135 QESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLV 182
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 26.2 bits (58), Expect = 6.8
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 150 KMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 184
KM+ + + + I+E + G+VP+ V
Sbjct: 211 KMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFV 245
>2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate,
product-bound, structural genomics, protein STRU
initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens
str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A
Length = 419
Score = 26.0 bits (57), Expect = 7.5
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 138 PEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGV 179
+ + + ++ A L +++ PP+ L +AG
Sbjct: 283 ETGAKALAKAGTVAVLLPG--AFYALREKQLPPVQALRDAGA 322
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 25.8 bits (57), Expect = 9.0
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 150 KMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 184
K++ I + M + ++ AG++P V
Sbjct: 205 KLKAIPSDGKFAMRASALQEALERDKAAGLIPFFV 239
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 26.1 bits (58), Expect = 9.2
Identities = 5/45 (11%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 140 MIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 184
G+ + + + M + I + G++P +
Sbjct: 220 SWMGLGEKA--VMTVDANADGTMDITKLDEVIAQAKAEGLIPFAI 262
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.130 0.357
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,787,811
Number of extensions: 161567
Number of successful extensions: 613
Number of sequences better than 10.0: 1
Number of HSP's gapped: 597
Number of HSP's successfully gapped: 159
Length of query: 187
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 99
Effective length of database: 4,244,745
Effective search space: 420229755
Effective search space used: 420229755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.1 bits)