RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10739
(187 letters)
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 503
Score = 101 bits (251), Expect = 5e-26
Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 6/123 (4%)
Query: 71 RKASFKNAGK-SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDE-----IEEENVTV 124
R+ +FKN G+ S DE+RR+R VELRKA +D+ L KRRN + E+E+
Sbjct: 6 RRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVS 65
Query: 125 IEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 184
+ S ++ +P+M + + S + + ++ AT R++LS+E PPID +I+AGVVP V
Sbjct: 66 ADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLV 125
Query: 185 FQR 187
Sbjct: 126 EFM 128
Score = 36.6 bits (83), Expect = 0.001
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 4 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+ + EAAW ++NI +G S Q V+ +P + +L G +V+++A
Sbjct: 130 ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAI 183
Score = 35.8 bits (81), Expect = 0.002
Identities = 24/125 (19%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSR---QIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LL + KEA W ISN ++G + I +++ +G + + ++LE D ++ +
Sbjct: 379 KLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTL 438
Query: 58 INTKMSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRN--IDQLD 115
+ K+ D++A N ++ D + + + + +++D+++++ I+
Sbjct: 439 DALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 498
Query: 116 EIEEE 120
EE+
Sbjct: 499 GEEED 503
Score = 25.8 bits (55), Expect = 4.3
Identities = 20/190 (10%), Positives = 56/190 (29%), Gaps = 7/190 (3%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA--- 57
LL + V + ++A W + N+ ++ D+V+Q + I+ + + + + A
Sbjct: 169 QLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTL 228
Query: 58 ----INTKMSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQ 113
K + + + + + + + +
Sbjct: 229 SNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR 288
Query: 114 LDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDE 173
+ + E ++ +P V ++ G + A ++L I +
Sbjct: 289 IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKK 348
Query: 174 LIEAGVVPIC 183
+ I
Sbjct: 349 EACWTISNIT 358
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId:
10090]}
Length = 434
Score = 60.2 bits (144), Expect = 1e-11
Identities = 21/55 (38%), Positives = 40/55 (72%)
Query: 130 MSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 184
+ +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P V
Sbjct: 8 QGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFV 62
Score = 37.1 bits (84), Expect = 8e-04
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTK 61
L + I E+AW ++NI +G S Q V+ G +P +++L + A + ++A
Sbjct: 65 LGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALG 124
Query: 62 M 62
Sbjct: 125 N 125
Score = 35.9 bits (81), Expect = 0.002
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITA-GNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
+LS + KEAAW I+N T+ G QI +++ G++ ++N+L D K+ +
Sbjct: 321 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 378
Score = 26.7 bits (57), Expect = 1.9
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 1 SLLSSSRVNIVKEAAWTISNI-----TAGNSRQIDHVIQE-GLLPYIVNILENGDAKVQK 54
+LLS+ I++ ISNI G + ++ +I+E G L I + + + V K
Sbjct: 364 NLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYK 423
Query: 55 EA 56
+
Sbjct: 424 AS 425
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 457
Score = 48.7 bits (114), Expect = 1e-07
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LSS A+ I + + V Q G + +V++L + + VQ+ AA
Sbjct: 9 QYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAA 65
Score = 30.6 bits (67), Expect = 0.10
Identities = 9/57 (15%), Positives = 22/57 (38%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LL S N+ + AA + N+ ++ ++ + V++L ++
Sbjct: 51 DLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQL 107
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 529
Score = 39.9 bits (91), Expect = 1e-04
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 1 SLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAA 57
LL S NI + AA + + A + + + EG + +L + + V AA
Sbjct: 467 QLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAA 522
Score = 27.2 bits (58), Expect = 1.3
Identities = 17/173 (9%), Positives = 47/173 (27%)
Query: 3 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTKM 62
L S +++ A T+ N+ V G L +V +L + K ++
Sbjct: 110 LGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 169
Query: 63 SQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENV 122
+ + G + L + ++ + ++ +E +
Sbjct: 170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGM 229
Query: 123 TVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELI 175
+ P + V + +++ + + D +
Sbjct: 230 QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINV 282
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 264
Score = 30.4 bits (67), Expect = 0.10
Identities = 15/167 (8%), Positives = 47/167 (28%), Gaps = 14/167 (8%)
Query: 2 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLLPYIVNILENGDAKVQKEAAINTK 61
L + + AA I + + + V+ G L ++ +L+ + A+
Sbjct: 67 YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAI 126
Query: 62 MSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEEN 121
+ +V +R + Q K ++ L + +
Sbjct: 127 SCLVREQEAGL-----------LQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH 175
Query: 122 VTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERH 168
C + +++ +++ + + +++
Sbjct: 176 PEHKGTLCSMGMV---QQLVALVRTEHSPFHEHVLGALCSLVTDFPQ 219
>d1r0ri_ g.68.1.1 (I:) Ovomucoid domains {Turkey (Meleagris
gallopavo) [TaxId: 9103]}
Length = 51
Score = 24.1 bits (52), Expect = 3.4
Identities = 5/26 (19%), Positives = 8/26 (30%), Gaps = 3/26 (11%)
Query: 79 GKSFD---EMRRKRCEMNVELRKAHK 101
K++ E N L +H
Sbjct: 23 NKTYGNKCNFCNAVVESNGTLTLSHF 48
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.130 0.357
Gapped
Lambda K H
0.267 0.0640 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 666,248
Number of extensions: 29774
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 21
Length of query: 187
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 107
Effective length of database: 1,309,196
Effective search space: 140083972
Effective search space used: 140083972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)