BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10742
(207 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14B62|PTHD1_MOUSE Patched domain-containing protein 1 OS=Mus musculus GN=Ptchd1 PE=2
SV=2
Length = 888
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%)
Query: 121 LKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAI 180
L+ F +LG FIA HP +F P+L++I+ F R E E+L +PQH K ER +
Sbjct: 10 LRTCFSRLGHFIASHPVFFASAPVLISILLGASFSRYQVEESVEHLLAPQHSLAKIERNL 69
Query: 181 VEQYFKMNYSARFNPTRITRPGRY 204
V F +N S + + PGRY
Sbjct: 70 VNSLFPVNRSKHRLYSDLQTPGRY 93
>sp|Q96NR3|PTHD1_HUMAN Patched domain-containing protein 1 OS=Homo sapiens GN=PTCHD1 PE=2
SV=2
Length = 888
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%)
Query: 121 LKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAI 180
L+ F +LG FIA HP +F P+L++I+ F R E E+L +PQH K ER +
Sbjct: 10 LRTCFSRLGHFIASHPVFFASAPVLISILLGASFSRYQVEESVEHLLAPQHSLAKIERNL 69
Query: 181 VEQYFKMNYSARFNPTRITRPGRY 204
V F +N S + + PGRY
Sbjct: 70 VNSLFPVNRSKHRLYSDLQTPGRY 93
>sp|Q5RIV7|PTHD1_DANRE Patched domain-containing protein 1 OS=Danio rerio GN=ptchd1 PE=3
SV=1
Length = 897
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 115 KCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTII-CITGFQRIFFEMDPEYLFSPQHGP 173
+ + LK F+ LG+F++RHP +F+ VP +LTII T R E D E L +P H
Sbjct: 4 QVIHRGLKASFYWLGLFVSRHPVFFLTVPAVLTIIFGSTVLSRFKPETDLEILVAPTHSL 63
Query: 174 GKTERAIVEQYFKMNYSARFNPTRITRPGRY 204
K ER++ F ++ S + + PGRY
Sbjct: 64 AKIERSLANSLFPIDQSKHKLYSDLHTPGRY 94
>sp|Q3KNS1|PTHD3_HUMAN Patched domain-containing protein 3 OS=Homo sapiens GN=PTCHD3 PE=1
SV=3
Length = 767
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 112 CGLKCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRI--FFEMDPEYLFSP 169
C C++ L R F LG + HP F++ P++LT TGF + E D E ++P
Sbjct: 114 CHTDCLEGLLSRTFQWLGWQVGAHPWIFLLAPLMLTAALGTGFLYLPKDEEEDLEEHYTP 173
Query: 170 QHGPGKTERAIVEQYFKMNYSARFNPTRITRPGRYI 205
P K ER V+ +F N S RF+ +R + ++
Sbjct: 174 VGSPAKAERRFVQGHFTTNDSYRFSASRRSTEANFV 209
>sp|B9EKX1|PTHD4_MOUSE Patched domain-containing protein 4 OS=Mus musculus GN=Ptchd4 PE=2
SV=2
Length = 904
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 121 LKRLFFKLGVFIARHPGYFIIVPILLTI-ICITGFQRIFFEMDPEYLFSPQHGPGKTERA 179
L+ +LG+ ++RHP +F+ VP +LTI ++ R E D E L +P H K ER+
Sbjct: 27 LQSFCHRLGLCVSRHPVFFLTVPAVLTITFGLSALNRFQTEGDLERLVAPSHSLAKIERS 86
Query: 180 IVEQYFKMNYSARFNPTRITRPGRY 204
+ F ++ S + + PGRY
Sbjct: 87 LASSLFPLDQSKSQLYSDLHTPGRY 111
>sp|Q6ZW05|PTHD4_HUMAN Patched domain-containing protein 4 OS=Homo sapiens GN=PTCHD4 PE=2
SV=3
Length = 846
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 121 LKRLFFKLGVFIARHPGYFIIVPILLTI-ICITGFQRIFFEMDPEYLFSPQHGPGKTERA 179
L+ +LG+ ++RHP +F+ VP +LTI ++ R E D E L +P H K ER+
Sbjct: 27 LQSFCHRLGLCVSRHPVFFLTVPAVLTITFGLSALNRFQPEGDLERLVAPSHSLAKIERS 86
Query: 180 IVEQYFKMNYSARFNPTRITRPGRY 204
+ F ++ S + + PGRY
Sbjct: 87 LASSLFPLDQSKSQLYSDLHTPGRY 111
>sp|Q0EEE2|PTHD3_MOUSE Patched domain-containing protein 3 OS=Mus musculus GN=Ptchd3 PE=1
SV=1
Length = 906
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 112 CGLKCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYL---FS 168
C C++ L R F + G + +P F++ P LLT TG IF + E L ++
Sbjct: 71 CHTNCLEAPLSRGFQRFGATVGANPWLFLLGPALLTASLGTGL--IFLPKEKENLEEQYT 128
Query: 169 PQHGPGKTERAIVEQYFKMNYSARFNPTRITRPGRY 204
P P K ER V+ +F N + RF+ +R + +
Sbjct: 129 PIGSPAKAERRFVQGHFSTNDTYRFSASRTSSETNF 164
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 1 MLTKEIWKELRLIDEIVHNTSIVFGEDDQVYRYDDICAKWVDSCFPNDILNLDYVIEEVE 60
+L EI+KE+ +D+ V +V Q+ Y ++CAK+ C P + L +
Sbjct: 176 LLEPEIFKEVSKLDQAVQALKVVQENGTQIL-YQEVCAKYKTLCVPPNPLLFSWQ-HNSS 233
Query: 61 TKALNLTFPIRFT 73
+LTFPI T
Sbjct: 234 LNLSDLTFPIHNT 246
>sp|O35604|NPC1_MOUSE Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=2
Length = 1277
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 118 DNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTE 177
D+ L+R+F K G F R+P I + +C +G + +P L+S H + E
Sbjct: 332 DDCLRRMFTKWGAFCVRNPTCIIFFSLAFITVCSSGLVFVQVTTNPVELWSAPHSQARLE 391
Query: 178 RAIVEQYF 185
+ +++F
Sbjct: 392 KEYFDKHF 399
>sp|P56941|NPC1_PIG Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1
Length = 1277
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 121 LKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAI 180
L+RLF + G F RHPG + + + C +G I DP L+S + E+
Sbjct: 335 LRRLFAQWGAFCVRHPGCVVFFSLAFIVACSSGLVFIRVTTDPVDLWSAPGSQARREKEY 394
Query: 181 VEQYF 185
+ +F
Sbjct: 395 FDTHF 399
>sp|O15118|NPC1_HUMAN Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2
Length = 1278
Score = 37.0 bits (84), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 118 DNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTE 177
+ L+RLF + G F R+PG I ++ C +G + +P L+S + E
Sbjct: 332 EGCLRRLFTRWGSFCVRNPGCVIFFSLVFITACSSGLVFVRVTTNPVDLWSAPSSQARLE 391
Query: 178 RAIVEQYF 185
+ +Q+F
Sbjct: 392 KEYFDQHF 399
>sp|Q61115|PTC1_MOUSE Protein patched homolog 1 OS=Mus musculus GN=Ptch1 PE=2 SV=1
Length = 1434
Score = 35.0 bits (79), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 122 KRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAIV 181
+RL FKLG +I ++ G F++V +L+ G + E + E L+ G E
Sbjct: 70 QRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAANLETNVEELWVEVGGRVSRELNYT 129
Query: 182 EQYFKMNYSARFNP 195
Q K+ A FNP
Sbjct: 130 RQ--KIGEEAMFNP 141
>sp|Q13635|PTC1_HUMAN Protein patched homolog 1 OS=Homo sapiens GN=PTCH1 PE=1 SV=2
Length = 1447
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 122 KRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAIV 181
+RL FKLG +I ++ G F++V +L+ G + E + E L+ G E
Sbjct: 84 QRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAANLETNVEELWVEVGGRVSRELNYT 143
Query: 182 EQYFKMNYSARFNP 195
Q K+ A FNP
Sbjct: 144 RQ--KIGEEAMFNP 155
>sp|O27179|PYCB_METTH Pyruvate carboxylase subunit B OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=pycB PE=1 SV=1
Length = 568
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 17/92 (18%)
Query: 2 LTKEIWKELRLIDEIVHNTSIVF---GEDDQVYRY--DDICAKWVDSCFPN--------- 47
L ++ W+ LR + E V T I G++ Y++ DDI K+++ + N
Sbjct: 58 LNEDPWERLRELKEHVKRTPIQMLLRGQNLVGYKHYPDDIVRKFIEKSYENGVDVFRIFD 117
Query: 48 ---DILNLDYVIEEVETKALNLTFPIRFTFSP 76
DI N++Y I+ + ++ I +T SP
Sbjct: 118 ALNDIRNMEYAIKVAREQEAHVQGVICYTISP 149
>sp|Q9VTT9|DEFI8_DROME Differentially expressed in FDCP 8 homolog OS=Drosophila
melanogaster GN=CG11534 PE=1 SV=1
Length = 492
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 74 FSPRRATIDPRRRLCVNTAQEQFLTPLSFPCPQISMAGCGLKCVD 118
F + ID +R+C + + P+S CP+I +A G KC +
Sbjct: 200 FLVHQKCIDGVKRVCAHVLVSERQHPISEICPEIGLASQGYKCAE 244
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.145 0.461
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,865,830
Number of Sequences: 539616
Number of extensions: 3357641
Number of successful extensions: 7504
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7487
Number of HSP's gapped (non-prelim): 16
length of query: 207
length of database: 191,569,459
effective HSP length: 112
effective length of query: 95
effective length of database: 131,132,467
effective search space: 12457584365
effective search space used: 12457584365
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)