Query psy10742
Match_columns 207
No_of_seqs 203 out of 470
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 17:24:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10742.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10742hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ne5_A Cation efflux system pr 57.0 15 0.00052 36.4 6.0 43 116-158 523-565 (1054)
2 4dx5_A Acriflavine resistance 55.9 15 0.00051 36.5 5.8 62 120-181 522-591 (1057)
3 2v50_A Multidrug resistance pr 51.2 18 0.00062 36.0 5.4 56 121-176 523-586 (1052)
4 2lon_A HIG1 domain family memb 33.3 13 0.00045 27.2 0.0 37 122-159 15-51 (99)
5 2lom_A HIG1 domain family memb 29.8 16 0.00056 26.4 0.0 40 122-162 14-53 (93)
6 2gx5_A GTP-sensing transcripti 15.6 93 0.0032 24.6 2.7 29 5-39 12-40 (170)
7 1qlo_A Herpes simplex virus pr 15.2 79 0.0027 18.4 1.6 21 13-39 8-28 (34)
8 3ns6_A Eukaryotic translation 9.5 1.5E+02 0.005 20.1 1.9 27 106-132 8-40 (100)
9 4rxn_A Rubredoxin; electron tr 8.5 78 0.0027 20.4 0.1 17 98-114 33-49 (54)
10 2l8s_A Integrin alpha-1; trans 7.5 2.5E+02 0.0086 18.1 2.2 12 134-145 6-17 (54)
No 1
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=56.95 E-value=15 Score=36.43 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHhhchhhhccchhhhHHHHHHHHHhhcccccee
Q psy10742 116 CVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIF 158 (207)
Q Consensus 116 ~ie~~l~~~F~~~G~~var~P~~fii~~llvt~~ls~Gl~~~~ 158 (207)
.+.+.+.+++.++..++-+||+.++++.+++.+++..++..+.
T Consensus 523 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 565 (1054)
T 3ne5_A 523 PLNRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVG 565 (1054)
T ss_dssp -CHHHHHHHHHHHHHHHTSSTHHHHHHHHHHHHHTHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4456788899999999999999999998887776666655544
No 2
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=55.95 E-value=15 Score=36.51 Aligned_cols=62 Identities=11% Similarity=0.159 Sum_probs=41.0
Q ss_pred HHHHHHHhhchhhhccchhhhHHHHHHHHHhhccccceeeec----Cc----cccccCCCCChHHHHHHH
Q psy10742 120 TLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEM----DP----EYLFSPQHGPGKTERAIV 181 (207)
Q Consensus 120 ~l~~~F~~~G~~var~P~~fii~~llvt~~ls~Gl~~~~~e~----D~----~~LwsP~~S~ar~E~~~~ 181 (207)
.+.+++.++..++-+|||.++++.+++.+++..++..+..+- |. .....|+++......+..
T Consensus 522 ~~~~~y~~~l~~~lr~~~~~~~~~~~~l~~~~~~~~~l~~~f~P~~d~~~i~v~v~~p~gtsle~t~~~~ 591 (1057)
T 4dx5_A 522 KSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVL 591 (1057)
T ss_dssp HHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHHSCBCSSCCCCCSEEEEEEECCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCcccCCCCCCCEEEEEEEcCCCCCHHHHHHHH
Confidence 456788889999999999999988887766655554443321 11 234567777665544443
No 3
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=51.16 E-value=18 Score=36.00 Aligned_cols=56 Identities=14% Similarity=0.168 Sum_probs=36.1
Q ss_pred HHHHHHhhchhhhccchhhhHHHHHHHHHhhccccceeeecCc--------cccccCCCCChHH
Q psy10742 121 LKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDP--------EYLFSPQHGPGKT 176 (207)
Q Consensus 121 l~~~F~~~G~~var~P~~fii~~llvt~~ls~Gl~~~~~e~D~--------~~LwsP~~S~ar~ 176 (207)
+.+.+.++..++-+|||.++++.+++.+++..++..+..+-.| ..+..|+++....
T Consensus 523 ~~~~y~~~l~~~l~~~~~~l~~~~~l~~~~~~~~~~l~~~f~P~~d~~~~~v~~~~p~g~s~~~ 586 (1052)
T 2v50_A 523 TTHGYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTPPGSSAER 586 (1052)
T ss_dssp HHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHTSCBCSSCCCCTTEEEEEEECSTTCCHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCccCCCCCCCEEEEEEEcCCCCCHHH
Confidence 4566888889999999999988777766554444433322222 1345688776543
No 4
>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=33.25 E-value=13 Score=27.21 Aligned_cols=37 Identities=14% Similarity=-0.128 Sum_probs=27.8
Q ss_pred HHHHHhhchhhhccchhhhHHHHHHHHHhhccccceee
Q psy10742 122 KRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFF 159 (207)
Q Consensus 122 ~~~F~~~G~~var~P~~fii~~llvt~~ls~Gl~~~~~ 159 (207)
+.+..++.+.+..+| ++++.++.+++++..|+..+.-
T Consensus 15 es~~~K~~rk~ke~P-lvpIg~l~~~~vl~~Gl~~~~~ 51 (99)
T 2lon_A 15 DCVSEKLLRKTRESP-LVPIGLGGCLVVAAYRIYRLRS 51 (99)
Confidence 355567778888999 4556777788888999988853
No 5
>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=29.78 E-value=16 Score=26.37 Aligned_cols=40 Identities=13% Similarity=-0.016 Sum_probs=28.8
Q ss_pred HHHHHhhchhhhccchhhhHHHHHHHHHhhccccceeeecC
Q psy10742 122 KRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMD 162 (207)
Q Consensus 122 ~~~F~~~G~~var~P~~fii~~llvt~~ls~Gl~~~~~e~D 162 (207)
+.+-.++.+.+..+| ++++.++.+++++..|+..+.--.|
T Consensus 14 e~~~~K~~rk~ke~P-lvpIg~~~~~~vl~~Gl~~~~~rG~ 53 (93)
T 2lom_A 14 EDQGSKLIRKAKEAP-FVPVGIAGFAAIVAYGLYKLKSRGN 53 (93)
Confidence 455567778888999 4456667777888899988764333
No 6
>2gx5_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, GAF domain; HET: PG4 P6G PCG PGE; 1.74A {Bacillus subtilis} PDB: 2b18_A 2hgv_A*
Probab=15.65 E-value=93 Score=24.63 Aligned_cols=29 Identities=7% Similarity=0.384 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhcceeeccCCceecchhhhcc
Q psy10742 5 EIWKELRLIDEIVHNTSIVFGEDDQVYRYDDICAK 39 (207)
Q Consensus 5 ~~~~Ei~~Ld~~I~n~~v~~~~~g~~~tY~dlCar 39 (207)
+.++..++|++.+|+. +|....|+|+|..
T Consensus 12 ~LL~KtRkIN~lLq~~------~~~~v~f~eia~v 40 (170)
T 2gx5_A 12 ALLQKTRIINSMLQAA------AGKPVNFKEMAET 40 (170)
T ss_dssp HHHHHHHHHHHHHHSC------CCSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC------CCCCCCHHHHHHH
Confidence 5688889999998886 4556789999984
No 7
>1qlo_A Herpes simplex virus protein ICP47; membrane proteins; NMR {Herpes simplex virus} SCOP: j.35.1.1
Probab=15.22 E-value=79 Score=18.39 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=13.2
Q ss_pred HHHHHHhcceeeccCCceecchhhhcc
Q psy10742 13 IDEIVHNTSIVFGEDDQVYRYDDICAK 39 (207)
Q Consensus 13 Ld~~I~n~~v~~~~~g~~~tY~dlCar 39 (207)
-|-++-+..+.. =||.|+|+.
T Consensus 8 ~d~fld~~r~~~------rty~dv~~e 28 (34)
T 1qlo_A 8 ADTFLDNMRVGP------RTYADVRDE 28 (34)
T ss_dssp HHHHHHTCSSSC------CCHHHHHHH
T ss_pred HHHHHHhcccCc------ccHHHHHHH
Confidence 345555655522 379999984
No 8
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=9.47 E-value=1.5e+02 Score=20.09 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=21.7
Q ss_pred cccccccch------hhHHHHHHHHHHhhchhh
Q psy10742 106 QISMAGCGL------KCVDNTLKRLFFKLGVFI 132 (207)
Q Consensus 106 ~~~~~~~~~------~~ie~~l~~~F~~~G~~v 132 (207)
.+.+-.++. ...+..|..+|..+|...
T Consensus 8 ~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~ 40 (100)
T 3ns6_A 8 YIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVV 40 (100)
T ss_dssp EEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEE
T ss_pred EEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEe
Confidence 455566777 899999999999999654
No 9
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=8.49 E-value=78 Score=20.41 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=13.1
Q ss_pred cCCCCCCccccccccch
Q psy10742 98 TPLSFPCPQISMAGCGL 114 (207)
Q Consensus 98 ~~~~~~~~~~~~~~~~~ 114 (207)
+|+.|.||.++..+..+
T Consensus 33 lP~dw~CP~Cg~~K~~F 49 (54)
T 4rxn_A 33 IPDDWVCPLCGVGKDEF 49 (54)
T ss_dssp SCTTCBCTTTCCBGGGE
T ss_pred CCCCCcCcCCCCcHHHc
Confidence 49999999999755433
No 10
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=7.50 E-value=2.5e+02 Score=18.11 Aligned_cols=12 Identities=25% Similarity=0.564 Sum_probs=7.5
Q ss_pred ccchhhhHHHHH
Q psy10742 134 RHPGYFIIVPIL 145 (207)
Q Consensus 134 r~P~~fii~~ll 145 (207)
.-||+.|+++++
T Consensus 6 ~vp~WiIi~svl 17 (54)
T 2l8s_A 6 RVPLWVILLSAF 17 (54)
T ss_dssp CCCTHHHHHHHH
T ss_pred cCchHHHHHHHH
Confidence 357777766654
Done!