RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10742
(207 letters)
>gnl|CDD|233184 TIGR00917, 2A060601, Niemann-Pick C type protein family. The model
describes Niemann-Pick C type protein in eukaryotes. The
defective protein has been associated with Niemann-Pick
disease which is described in humans as autosomal
recessive lipidosis. It is characterized by the
lysosomal accumulation of unestrified cholesterol. It is
an integral membrane protein, which indicates that this
protein is most likely involved in cholesterol transport
or acts as some component of cholesterol homeostasis
[Transport and binding proteins, Other].
Length = 1204
Score = 43.7 bits (103), Expect = 3e-05
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 121 LKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAI 180
L R F K G+++AR+PG + + + + ++ G E DP L+ PG + A+
Sbjct: 309 LARFFTKYGIWVARNPGLVLCLSVSVVLLLGVGLIFFEVETDPVKLWV---APG-SRAAL 364
Query: 181 VEQYFKMNYS 190
+++F ++
Sbjct: 365 EKEFFDTHFG 374
>gnl|CDD|223964 COG1033, COG1033, Predicted exporters of the RND superfamily
[General function prediction only].
Length = 727
Score = 33.4 bits (77), Expect = 0.064
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 124 LFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAIVEQ 183
+F KL FI R I++ +LLTI+ G Q + F+ E + +
Sbjct: 1 MFEKLARFIIRRRKSIILIFLLLTILSAFGAQNLEFDSGTETFLPK-------DNEEYKN 53
Query: 184 YFKMN 188
Y ++
Sbjct: 54 YDRLY 58
>gnl|CDD|225486 COG2935, COG2935, Putative arginyl-tRNA:protein
arginylyltransferase [Posttranslational modification,
protein turnover, chaperones].
Length = 253
Score = 32.3 bits (74), Expect = 0.11
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 181 VEQYFKMNYSARFNPTRITRPGRYIPE 207
++ KMNY ARF+P + PG +
Sbjct: 217 IKGCPKMNYKARFSPLELLVPGGWRRF 243
>gnl|CDD|233187 TIGR00921, 2A067, The (Largely Archaeal Putative)
Hydrophobe/Amphiphile Efflux-3 (HAE3) Family.
Characterized members of the RND superfamily all
probably catalyze substrate efflux via an H+ antiport
mechanism. These proteins are found ubiquitously in
bacteria, archaea and eukaryotes. They fall into seven
phylogenetic families, this family (2.A.6.7) consists of
uncharacterised putative transporters, largely in the
Archaea [Transport and binding proteins, Unknown
substrate].
Length = 719
Score = 29.0 bits (65), Expect = 1.7
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 11/71 (15%)
Query: 120 TLKRLFFKLGVFIARHPGYFIIVPILLTIICITGF-----QRIFFEMDPEYLFSPQHGPG 174
++ K+ RHP VP L+ + ITG I E++ E F PQ P
Sbjct: 367 EIEEELSKVLSITVRHP-----VPALVAALIITGLGLYGAAGIKPEVNIEK-FIPQDLPS 420
Query: 175 KTERAIVEQYF 185
R ++E +
Sbjct: 421 LQARKVIESHM 431
>gnl|CDD|233185 TIGR00918, 2A060602, The Eukaryotic (Putative) Sterol Transporter
(EST) Family.
Length = 1145
Score = 29.1 bits (65), Expect = 2.1
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 122 KRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAIV 181
+RL F LG +I +H G + V +L+ G + E + E L+ G E A
Sbjct: 44 QRLLFTLGCYIQKHCGKVLFVGLLVFSAFAVGLRAANIETNVEQLWVEVGGRVSQELAYT 103
Query: 182 EQYFKMNYSARFNP 195
Q K+ A F P
Sbjct: 104 RQ--KIGEEAMFTP 115
>gnl|CDD|217064 pfam02487, CLN3, CLN3 protein. This is a family of proteins from
the CLN3 gene. A missense mutation of glutamic acid (E)
to lysine (K) at position 295 in the human protein has
been implicated in Juvenile neuronal ceroid
lipofuscinosis (Batten disease).
Length = 409
Score = 28.6 bits (64), Expect = 2.3
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 126 FKLGVFIARHPGYFIIVPILLTIIC--ITGFQRIFFEMDPEYLFSPQ 170
++LGVFI+R G+ + +P I + FF D Y F+P
Sbjct: 295 YQLGVFISRSSGHLVRMPTWSLYILAFLQCVNLCFFFFDAWYSFTPS 341
>gnl|CDD|219416 pfam07456, Hpre_diP_synt_I, Heptaprenyl diphosphate synthase
component I. This family contains component I of
bacterial heptaprenyl diphosphate synthase (EC:2.5.1.30)
(approximately 170 residues long). This is one of the
two dissociable subunits that form the enzyme, both of
which are required for the catalysis of the biosynthesis
of the side chain of menaquinone-7.
Length = 146
Score = 27.5 bits (62), Expect = 3.6
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 128 LGVFIARHPGYFIIVPILLTIICITGF 154
+ I ++ G F +P+LL ITG
Sbjct: 111 VASLIVQNKGVFYYLPVLLIAGIITGL 137
>gnl|CDD|220541 pfam10053, DUF2290, Uncharacterized conserved protein (DUF2290).
Members of this family of hypothetical bacterial
proteins have no known function.
Length = 196
Score = 27.4 bits (61), Expect = 4.4
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 48 DILNLDYVIEEVETKALNLTFPIRFTFSPRRAT 80
D+ LD + E+ + + L FP+RF F P
Sbjct: 91 DLYLLDILFLEIVERLI-LRFPLRFDFDPDARE 122
>gnl|CDD|233186 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-coenzyme A
reductase. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 889
Score = 27.9 bits (62), Expect = 4.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 121 LKRLFFKLGVFIARHPGYFIIVPILLTIICIT 152
L RLF G F A HP I+ + LTI ++
Sbjct: 2 LSRLFRAHGQFCASHPWEVIVGTLTLTICMLS 33
>gnl|CDD|177986 PLN02353, PLN02353, probable UDP-glucose 6-dehydrogenase.
Length = 473
Score = 27.7 bits (62), Expect = 4.7
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 43 SCFPNDILNLDYVIE 57
SCF DILNL Y+ E
Sbjct: 271 SCFQKDILNLVYICE 285
>gnl|CDD|115357 pfam06694, Plant_NMP1, Plant nuclear matrix protein 1 (NMP1). This
family consists of several plant specific nuclear matrix
protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is
a ubiquitously expressed 36 kDa protein, which has no
homologues in animals and fungi, but is highly conserved
among flowering and non-flowering plants. NMP1 is
located both in the cytoplasm and nucleus and that the
nuclear fraction is associated with the nuclear matrix.
NMP1 is a candidate for a plant-specific structural
protein with a function both in the nucleus and
cytoplasm.
Length = 325
Score = 27.3 bits (60), Expect = 5.6
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 4 KEIWKELRLIDEIVHNTSIVFGEDDQVYRYDDICAKWVDSCFP-NDILNLDYVIEEVETK 62
+++ K+++LID I + +F E+ +++ D + S +P DI +L+ + + K
Sbjct: 128 EQLAKDIQLIDAIAEKQAQIFSEECKLFPAD----VQIQSIYPLPDIADLEKKLSDQSKK 183
Query: 63 ALNL 66
LNL
Sbjct: 184 LLNL 187
>gnl|CDD|225272 COG2409, COG2409, Predicted drug exporters of the RND superfamily
[General function prediction only].
Length = 937
Score = 27.8 bits (62), Expect = 5.8
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 124 LFFKLGVFIARHPGYFIIVPILLTII 149
F +G FI R I+ I L ++
Sbjct: 2 GLFPIGRFIRRFAWAVILAWIALAVV 27
>gnl|CDD|218050 pfam04377, ATE_C, Arginine-tRNA-protein transferase, C terminus.
This family represents the C terminal region of the
enzyme arginine-tRNA-protein transferase (EC 2.3.2.8),
which catalyzes the post-translational conjugation of
arginine to the N terminus of a protein. In eukaryotes,
this functions as part of the N-end rule pathway of
protein degradation by conjugating a destabilising amino
acid to the amino terminal aspartate or glutamate of a
protein, targeting the protein for ubiquitin-dependent
proteolysis. N terminal cysteine is sometimes modified.
Length = 128
Score = 26.7 bits (60), Expect = 6.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 181 VEQYFKMNYSARFNPTRITRPGRY 204
++ KMNY ARF P I PG +
Sbjct: 105 IKGCPKMNYKARFRPLEILDPGGW 128
>gnl|CDD|129913 TIGR00833, actII, Transport protein. The
Resistance-Nodulation-Cell Division (RND) Superfamily-
MmpL sub family (TC 2.A.6.5)Characterized members of the
RND superfamily all probably catalyze substrate efflux
via an H+ antiport mechanism. These proteins are found
ubiquitously in bacteria, archaea and eukaryotes. This
sub-family includes the S. coelicolor ActII3 protein,
which may play a role in drug resistance, and the M.
tuberculosis MmpL7 protein, which catalyzes export of an
outer membrane lipid, phthiocerol dimycocerosate
[Transport and binding proteins, Unknown substrate].
Length = 910
Score = 27.2 bits (60), Expect = 7.9
Identities = 10/71 (14%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 118 DNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEMDPEYLFSPQHGPGKTE 177
+ ++ ++ +LG + R P ++ ++++ + + I D E + P
Sbjct: 343 KSKIRFIWRRLGTAVVRRPWPILVTTLIISGVSLLALPLIRTGYDDEKMI-PTDLESVQG 401
Query: 178 RAIVEQYFKMN 188
+++F N
Sbjct: 402 YEAADRHFPGN 412
>gnl|CDD|237593 PRK14041, PRK14041, oxaloacetate decarboxylase; Provisional.
Length = 467
Score = 27.1 bits (60), Expect = 8.9
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 17/92 (18%)
Query: 2 LTKEIWKELRLIDEIVHNTSI---VFGEDDQVYRY--DDICAKWVDSCFP---------- 46
L + W+ L+ I + + NT I + G++ YR+ DD+ +V
Sbjct: 57 LNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVKKVAEYGLDIIRIFD 116
Query: 47 --NDILNLDYVIEEVETKALNLTFPIRFTFSP 76
NDI NL+ IE + ++ I +T SP
Sbjct: 117 ALNDIRNLEKSIEVAKKHGAHVQGAISYTVSP 148
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production
and conversion].
Length = 459
Score = 26.8 bits (59), Expect = 9.4
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 168 SPQHGPGKTERAIVEQYFKMNYS------ARFNPTRITRPGRYIP 206
S +HG G+T+ +E ++ F+P I PG+
Sbjct: 413 SGEHGIGRTKAEFLELEPGEAWALLRAIKRAFDPNGIFNPGKLFR 457
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.145 0.461
Gapped
Lambda K H
0.267 0.0674 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,307,662
Number of extensions: 1091430
Number of successful extensions: 1249
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1248
Number of HSP's successfully gapped: 26
Length of query: 207
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 115
Effective length of database: 6,857,034
Effective search space: 788558910
Effective search space used: 788558910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.8 bits)