RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10742
(207 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 2e-04
Identities = 29/195 (14%), Positives = 67/195 (34%), Gaps = 41/195 (21%)
Query: 2 LTKEIWKELRLIDEIVHNTSIVFGEDDQVYR-YDDICAKWVDSC--FPNDILNLDY--VI 56
+ K I + ID I+ + R + + +K + F ++L ++Y ++
Sbjct: 41 MPKSILSK-EEIDHIIMSKD----AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 57 EEVETKALNLTFPIRFTFSPR-RATIDPR--------RRLCVNTAQEQFLTPLSFPCPQI 107
++T+ + R R R D + R ++ L L P +
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA-LLELR-PAKNV 153
Query: 108 S---MAGCGLK-------CVDNTLKRLFFKLGVF-IARHPGYFIIVPILLTIICITGFQR 156
+ G G K C+ ++ +F + + +L ++ Q+
Sbjct: 154 LIDGVLGSG-KTWVALDVCLSYKVQCKMD-FKIFWL--NLKNCNSPETVLEML-----QK 204
Query: 157 IFFEMDPEYLFSPQH 171
+ +++DP + H
Sbjct: 205 LLYQIDPNWTSRSDH 219
Score = 31.4 bits (70), Expect = 0.24
Identities = 32/240 (13%), Positives = 62/240 (25%), Gaps = 83/240 (34%)
Query: 2 LTKEIWKELRLIDEIVHNTSIVFGEDDQVYRYDDICAKWVD---SCFPNDI-----LNLD 53
L+ + L S+ D+ + K++D P ++ L
Sbjct: 281 LSAATTTHISLDHH-----SMTLTPDEVK----SLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 54 YVIEEVETKALNLTFPIRFTFSPRRATIDPRRRLCVNTAQEQFLTPLSFPCPQISMAGCG 113
+ E + + + D + T E L L
Sbjct: 332 IIAESIRD------GLATWDNW-KHVNCDK-----LTTIIESSLNVLE------------ 367
Query: 114 LKCVDNTLKRLFFKLGVFIARHPGYFIIVPILLTIICITGFQRIFFEM------------ 161
+++F +L VF I ++ + F I ++
Sbjct: 368 ----PAEYRKMFDRLSVFPPS-------AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 162 ---DPE---------YLFSPQHGPGKTE--RAIVEQYFKMNYSARFNPTRITRPG--RYI 205
P+ YL + R+IV+ Y N F+ + P +Y
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY---NIPKTFDSDDLIPPYLDQYF 473
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.004
Identities = 40/286 (13%), Positives = 91/286 (31%), Gaps = 120/286 (41%)
Query: 7 WKELR--------LIDEIVHNTSIVFGE-------DDQVYRYD-DICAKWVDSCFPNDIL 50
++ELR L+ +++ ++ E ++V+ +I +W+++ P++
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI-LEWLEN--PSNTP 226
Query: 51 NLDYVIEEVETKALNLTFPI-------RFTFSPRRATIDP---RRRLC--------VNTA 92
+ DY++ ++ ++ P+ + + + P R L + TA
Sbjct: 227 DKDYLL------SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 93 ------------------------------QEQF----LTPL----------SFPCPQIS 108
E + L P P P +S
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 109 MAGCGLKCVDNTLKRLFFKLG----VFIARHPGYFIIVPILLTIICITGFQRIFFEMDPE 164
++ + V + + + L V I+ G +V ++G P+
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV--------VSGP--------PQ 384
Query: 165 YLFS------PQHGPGKTERAIVEQYF---KMNYSARFNPTRITRP 201
L+ P +++ + F K+ +S RF P + P
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIP--FSERKLKFSNRFLP--VASP 426
Score = 31.2 bits (70), Expect = 0.25
Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 16/64 (25%)
Query: 154 FQRIFFEMD----PEYLFS--------PQ----HGPGKTERAIVEQYFKMNYSARFNPTR 197
Q ++ D Y FS P H G+ + I E Y M + +
Sbjct: 1642 AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKL 1701
Query: 198 ITRP 201
T
Sbjct: 1702 KTEK 1705
Score = 28.5 bits (63), Expect = 2.3
Identities = 35/216 (16%), Positives = 63/216 (29%), Gaps = 70/216 (32%)
Query: 26 EDDQVYRYDDICAKWVD---SCF--PNDI----LNLDYVIEEVETKALNLTFPIRFTFSP 76
E +V ++D + + +C+ NDI L +E +T + I+ +
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL---QENDTTLVKTKELIKNYITA 129
Query: 77 R----------------RATIDPRRRLCV------NTA------QEQFLTPLSFPCPQIS 108
R RA + +L NT ++ + T I
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIK 189
Query: 109 MAGCGLKCVDNTLKRL---------FFKLGVFIA---RHPG------YFIIVPILLTIIC 150
+ TL L F G+ I +P Y + +PI +I
Sbjct: 190 FSA-------ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG 242
Query: 151 ITGFQR--IFFE---MDPEYLFSPQHGPGKTERAIV 181
+ + + P L S G + +V
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 29.6 bits (67), Expect = 0.70
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 167 FS-PQHGP-GKTERAIVEQYFKMN---YSARFNPTRITRPGR 203
F+ ++G G +E +E+Y + Y + F P T R
Sbjct: 474 FTPLEYGACGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHR 515
>3etv_A Protein transport protein TIP20,linker,protein transport protein
DSL1; TIP20P-DSL1P complex, endoplasmic reticulum,
ER-golgi transport; 1.94A {Saccharomyces cerevisiae}
PDB: 3etu_A
Length = 355
Score = 28.6 bits (63), Expect = 1.4
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 1 MLTKEIWKELRLIDEIVHNTSIVFGEDDQVYRYDDICAKWVDSCFPNDILNLD 53
+LT WK + I ++ +G+D YD FP L+
Sbjct: 142 ILTNGFWKITE--NSIQFTPTVEWGKDKVHIEYDTFMDFVAQQYFPKGSLDNQ 192
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 28.3 bits (64), Expect = 1.9
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 174 GKTERAIVEQYFKMN---YSARFNPTRITRPGR 203
G +E V+Q+ + + PT P +
Sbjct: 376 GLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQK 408
>2c7p_A Modification methylase HHAI; DNA methyltransferase,
methyltransferase, base flipping, restriction system,
transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus
haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A*
1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A*
3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A*
9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Length = 327
Score = 28.2 bits (63), Expect = 2.1
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 8/66 (12%)
Query: 102 FPCPQISMAG--CGLKCVDNTLKRLFFKLGVFIARH-PGYFII--VPILLTIICITGFQR 156
FPC S++G G + T LFF + + P + V + +
Sbjct: 79 FPCQAFSISGKQKGFEDSRGT---LFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEV 135
Query: 157 IFFEMD 162
+ M+
Sbjct: 136 VKNTMN 141
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 27.9 bits (63), Expect = 2.5
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 174 GKTERAIVEQYFKMN---YSARFNPTRITRPGR 203
G +E V + + + Y A + P T R
Sbjct: 376 GLSEEEAVALHGQEHVEVYHAYYKPLEFTVADR 408
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer,
hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A*
1r4k_A 1si2_A 1si3_A
Length = 861
Score = 28.2 bits (62), Expect = 2.5
Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 3/104 (2%)
Query: 87 LCVNTAQEQFLTPLSFPCPQISMAGCGLKCVDNTLKRLFFKLGVFIARH-PGYFIIVPIL 145
L ++ + F P + K ++ K L V + G + +
Sbjct: 217 LNIDVSATAFYKAQ--PVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHC 274
Query: 146 LTIICITGFQRIFFEMDPEYLFSPQHGPGKTERAIVEQYFKMNY 189
+ + F Q G+T V QYFK +
Sbjct: 275 GQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRH 318
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote
structure initiative, NEW YORK SGX research center for
STRU genomics; 1.88A {Caenorhabditis elegans}
Length = 481
Score = 27.9 bits (63), Expect = 2.7
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 43 SCFPNDILNLDYVIEEV 59
SCF D+L+L Y+ E +
Sbjct: 282 SCFQKDVLSLVYLCESL 298
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 2.7
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 166 LFSPQHGPGKTERAIVE 182
L++ P +A +E
Sbjct: 31 LYADDSAPALAIKATME 47
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S
genomics consortium, SGC, oxidoreductase; HET: NAD UPG;
2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A*
3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Length = 467
Score = 27.5 bits (62), Expect = 3.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 43 SCFPNDILNLDYVIEE 58
SCF D+LNL Y+ E
Sbjct: 276 SCFQKDVLNLVYLCEA 291
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A
(DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A
{Homo sapiens}
Length = 295
Score = 27.2 bits (60), Expect = 3.6
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 12/83 (14%)
Query: 101 SFPCPQISMAGCGLKCVDNTLKRLFFKLGVFI--------ARHPGYFIIVPILLTIICIT 152
PC +S+ K + RLFF+ + P +++ ++ +
Sbjct: 90 GSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLHDARPKEGDDRPFFWLFENVVAMGVSDK 149
Query: 153 GFQRIFFEMDPEYL----FSPQH 171
F E +P + S H
Sbjct: 150 RDISRFLESNPVMIDAKEVSAAH 172
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A
{Xanthomonas campestris PV}
Length = 266
Score = 26.5 bits (59), Expect = 6.7
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 14 DEIVHNTSIVFGEDDQVYRYD 34
+ V N + D + YD
Sbjct: 88 EHGVFNRLLWATPDGALQYYD 108
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.145 0.461
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,460,483
Number of extensions: 206655
Number of successful extensions: 449
Number of sequences better than 10.0: 1
Number of HSP's gapped: 448
Number of HSP's successfully gapped: 29
Length of query: 207
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 118
Effective length of database: 4,216,824
Effective search space: 497585232
Effective search space used: 497585232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.5 bits)