BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10743
         (128 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UE9|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase (Ampsase)
           (Pura) From Burkholderia Thailandensis
 pdb|3UE9|B Chain B, Crystal Structure Of Adenylosuccinate Synthetase (Ampsase)
           (Pura) From Burkholderia Thailandensis
 pdb|3UE9|C Chain C, Crystal Structure Of Adenylosuccinate Synthetase (Ampsase)
           (Pura) From Burkholderia Thailandensis
 pdb|3UE9|D Chain D, Crystal Structure Of Adenylosuccinate Synthetase (Ampsase)
           (Pura) From Burkholderia Thailandensis
          Length = 452

 Score = 30.0 bits (66), Expect = 0.38,   Method: Composition-based stats.
 Identities = 10/15 (66%), Positives = 15/15 (100%)

Query: 29  LILPYHVSLNQSREA 43
           LILPYH++++Q+REA
Sbjct: 119 LILPYHIAIDQAREA 133


>pdb|3HID|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
           Yersinia Pestis Co92
          Length = 432

 Score = 27.7 bits (60), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/14 (71%), Positives = 13/14 (92%)

Query: 29  LILPYHVSLNQSRE 42
           LILPYHV+L+ +RE
Sbjct: 106 LILPYHVALDNARE 119


>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
           Endoprotease From Cucumis Melo L
 pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
           Endoprotease From Cucumis Melo L
          Length = 621

 Score = 26.9 bits (58), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 48  MSCKVAPRLRLHMKLFSPQHGPGKTERAIVEQYFKMNYSARFNP 91
           MSC     +  ++K ++P   P   + A++     MN  ARFNP
Sbjct: 416 MSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMN--ARFNP 457


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.139    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,780,715
Number of Sequences: 62578
Number of extensions: 133708
Number of successful extensions: 272
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 7
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)