Query psy10743
Match_columns 128
No_of_seqs 106 out of 121
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 17:25:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1934|consensus 99.5 5.9E-14 1.3E-18 130.7 5.4 83 9-104 8-91 (868)
2 TIGR00917 2A060601 Niemann-Pic 99.0 1.1E-10 2.4E-15 111.7 3.6 80 8-108 307-387 (1204)
3 TIGR00918 2A060602 The Eukaryo 97.8 9E-06 2E-10 78.5 1.8 73 3-83 36-109 (1145)
4 PF02460 Patched: Patched fami 97.5 4.2E-05 9.1E-10 69.9 1.5 54 56-110 2-55 (798)
5 KOG1933|consensus 95.8 0.0087 1.9E-07 58.7 3.8 69 8-84 285-354 (1201)
6 TIGR00921 2A067 The (Largely A 93.1 0.058 1.3E-06 48.3 2.1 67 9-84 367-434 (719)
7 TIGR00833 actII Transport prot 87.0 0.37 7.9E-06 45.5 1.9 66 12-85 348-413 (910)
8 COG2409 Predicted drug exporte 84.1 0.67 1.4E-05 44.3 2.1 68 11-86 358-425 (937)
9 COG1033 Predicted exporters of 80.8 0.99 2.2E-05 42.6 1.9 69 8-85 366-435 (727)
10 TIGR00921 2A067 The (Largely A 77.0 1.8 3.8E-05 38.9 2.2 51 23-82 2-53 (719)
11 TIGR00920 2A060605 3-hydroxy-3 72.0 2.2 4.7E-05 41.4 1.6 30 10-39 2-31 (886)
12 TIGR03480 HpnN hopanoid biosyn 56.5 4.1 8.8E-05 38.1 0.3 62 15-84 3-65 (862)
13 PF02460 Patched: Patched fami 46.7 15 0.00033 34.1 2.4 36 50-86 4-40 (798)
14 KOG1935|consensus 42.1 8.1 0.00018 38.1 -0.1 66 4-77 53-119 (1143)
15 TIGR00833 actII Transport prot 41.1 21 0.00044 34.1 2.4 57 23-85 1-57 (910)
16 COG2409 Predicted drug exporte 38.8 19 0.00042 34.6 1.8 64 14-83 3-66 (937)
17 COG1755 Uncharacterized protei 35.9 6.6 0.00014 31.5 -1.5 50 22-84 117-172 (172)
18 COG1033 Predicted exporters of 34.1 20 0.00043 34.1 1.1 61 13-82 1-62 (727)
19 PF07307 HEPPP_synt_1: Heptapr 28.2 29 0.00064 28.3 1.0 17 2-18 71-87 (212)
20 PF02157 Man-6-P_recep: Mannos 28.1 74 0.0016 27.2 3.5 52 56-108 29-80 (278)
21 PRK04998 hypothetical protein; 27.6 97 0.0021 21.4 3.4 31 74-107 33-63 (88)
22 PF06363 Picorna_P3A: Picornav 24.3 34 0.00073 25.3 0.6 32 7-38 51-82 (100)
23 COG4956 Integral membrane prot 23.2 39 0.00084 29.9 0.9 40 20-66 103-144 (356)
No 1
>KOG1934|consensus
Probab=99.46 E-value=5.9e-14 Score=130.66 Aligned_cols=83 Identities=17% Similarity=0.256 Sum_probs=76.8
Q ss_pred HHHHHhhhcCcceeeccceeehHHHHHHhhccCCCCccccceee-ecccccccccccCCCCCcHHHHHHHHhhhcCCCCc
Q psy10743 9 FVIATNMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKV-APRLRLHMKLFSPQHGPGKTERAIVEQYFKMNYSA 87 (128)
Q Consensus 9 ~~~~~F~~~G~~V~rhP~~FLi~PlllT~~L~~~~~~~g~~G~~-f~~~~D~eyLFTP~nspaK~Eravv~e~Fp~n~s~ 87 (128)
..+..|+|||.+|+||||+|+++|+++|+.+ +. |.+ ++.++|+.++|||.|++||.|+++.+|+||.
T Consensus 8 ~~~~~f~~~g~~v~~~p~~~ii~~l~lt~~~-------s~-g~~~~~~~~d~~~~ytP~~a~sr~E~~v~~e~~~~---- 75 (868)
T KOG1934|consen 8 ILKVLFRKYGLFVARYPWFFIIIPLLLTAVL-------SV-GILPLLTEDDARYLYTPSNARSRDERAVFKEFWPL---- 75 (868)
T ss_pred HHHHHHHHhCceeeecchHHHHHHHHHHHHH-------hc-CchhheecCCcceeeCCCCCchHHHHHHHHhhccc----
Confidence 4678999999999999999999999999999 44 644 6788999999999999999999999999999
Q ss_pred ccCCCcccCCCceEEEE
Q psy10743 88 RFNPTRITRPDRFHLCI 104 (128)
Q Consensus 88 ~F~p~Rl~t~grf~~vI 104 (128)
|.|+|....-||..++
T Consensus 76 -~~~g~~~~~~~~~~~~ 91 (868)
T KOG1934|consen 76 -FYPGRTIAIFRFIYLK 91 (868)
T ss_pred -cCCCceeEeEEEEEec
Confidence 9999999999999888
No 2
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=99.04 E-value=1.1e-10 Score=111.66 Aligned_cols=80 Identities=14% Similarity=-0.007 Sum_probs=71.2
Q ss_pred HHHHHHhhhcCcceeeccceeehHHHHHHhhccCCCCccccceee-ecccccccccccCCCCCcHHHHHHHHhhhcCCCC
Q psy10743 8 EFVIATNMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKV-APRLRLHMKLFSPQHGPGKTERAIVEQYFKMNYS 86 (128)
Q Consensus 8 ~~~~~~F~~~G~~V~rhP~~FLi~PlllT~~L~~~~~~~g~~G~~-f~~~~D~eyLFTP~nspaK~Eravv~e~Fp~n~s 86 (128)
.++.++|+|+|.+++||||.+|++++++++++ +. |+. ++.++|+++||+|.++|+|.|+++++++|..
T Consensus 307 ~~l~~~F~~~G~~var~P~~vi~isllv~~~l-------~~-Gl~~~~vetDpv~Lw~~~~s~ar~E~~~fd~~fgp--- 375 (1204)
T TIGR00917 307 GHLARFFTKYGIWVARNPGLVLCLSVSVVLLL-------GV-GLIFFEVETDPVKLWVAPGSRAALEKEFFDTHFGP--- 375 (1204)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH-------HH-HHHhCcccCChhhhcCCCCcHHHHHHHHHHHhcCC---
Confidence 57889999999999999999999999999999 55 777 6778999999999999999999999888864
Q ss_pred cccCCCcccCCCceEEEEEEcC
Q psy10743 87 ARFNPTRITRPDRFHLCIGFLG 108 (128)
Q Consensus 87 ~~F~p~Rl~t~grf~~vIv~s~ 108 (128)
..|+.+||++++
T Consensus 376 ----------f~r~eqvii~~~ 387 (1204)
T TIGR00917 376 ----------FYRIEQLIIAAV 387 (1204)
T ss_pred ----------ccceEEEEEEec
Confidence 247889998876
No 3
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=97.79 E-value=9e-06 Score=78.48 Aligned_cols=73 Identities=14% Similarity=-0.080 Sum_probs=65.2
Q ss_pred hhhchHHHHHHhhhcCcceeeccceeehHHHHHHhhccCCCCccccceee-ecccccccccccCCCCCcHHHHHHHHhhh
Q psy10743 3 ALLAGEFVIATNMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKV-APRLRLHMKLFSPQHGPGKTERAIVEQYF 81 (128)
Q Consensus 3 ~~~~~~~~~~~F~~~G~~V~rhP~~FLi~PlllT~~L~~~~~~~g~~G~~-f~~~~D~eyLFTP~nspaK~Eravv~e~F 81 (128)
||..-.++.++|+++|.+++||||..|++-+++.++| +. |+. ++-+.|+++|....+|+++.|.+.++++|
T Consensus 36 ~l~~~~~~q~~~~~~G~~~~~~p~~vl~~~~~~~~~~-------~~-Gl~~~~ietdp~~LWv~~~sr~~~E~~y~~~~~ 107 (1145)
T TIGR00918 36 PLWLRAKFQRLLFTLGCYIQKHCGKVLFVGLLVFSAF-------AV-GLRAANIETNVEQLWVEVGGRVSQELAYTRQKI 107 (1145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHCchhhhhHHHHHHHHH-------Hh-hHhheEEEecHHHhccCCCChHHHHHHHHHhcc
Confidence 4455578999999999999999999999999999999 44 777 67789999999999999999999999999
Q ss_pred cC
Q psy10743 82 KM 83 (128)
Q Consensus 82 p~ 83 (128)
..
T Consensus 108 gp 109 (1145)
T TIGR00918 108 GE 109 (1145)
T ss_pred CC
Confidence 44
No 4
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=97.48 E-value=4.2e-05 Score=69.86 Aligned_cols=54 Identities=28% Similarity=0.204 Sum_probs=48.3
Q ss_pred cccccccccCCCCCcHHHHHHHHhhhcCCCCcccCCCcccCCCceEEEEEEcCce
Q psy10743 56 LRLHMKLFSPQHGPGKTERAIVEQYFKMNYSARFNPTRITRPDRFHLCIGFLGTY 110 (128)
Q Consensus 56 ~~D~eyLFTP~nspaK~Eravv~e~Fp~n~s~~F~p~Rl~t~grf~~vIv~s~~~ 110 (128)
.+|++|+|+|.|+++|.|++..+++|+.+.+ +|.|+|....++|+.+++..+..
T Consensus 2 ~~~~~~~~tp~d~~~~~~~~~~s~~e~~~~~-~Ff~~~~~~~~~~~~i~a~~~~~ 55 (798)
T PF02460_consen 2 SSDIEYLFTPDDIRGYTERNSRSRREPEDSS-EFFPSRGSPFRRFVIIIAKDGGS 55 (798)
T ss_pred CCCcceecCCCCccccCCCcchhhhhhhhHh-hccCCCCCCceEEEEEEEecCCC
Confidence 3699999999999999999999999998766 79999999999998888886544
No 5
>KOG1933|consensus
Probab=95.81 E-value=0.0087 Score=58.74 Aligned_cols=69 Identities=13% Similarity=0.018 Sum_probs=61.0
Q ss_pred HHHHHHhhhcCcceeeccceeehHHHHHHhhccCCCCccccceee-ecccccccccccCCCCCcHHHHHHHHhhhcCC
Q psy10743 8 EFVIATNMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKV-APRLRLHMKLFSPQHGPGKTERAIVEQYFKMN 84 (128)
Q Consensus 8 ~~~~~~F~~~G~~V~rhP~~FLi~PlllT~~L~~~~~~~g~~G~~-f~~~~D~eyLFTP~nspaK~Eravv~e~Fp~n 84 (128)
.+|..+|.++|-++++||...+.+-+.+.+++ ++ |++ +....|+.+|.+-.++++++|++.+..+|.-.
T Consensus 285 ~~l~~~F~~~g~~~~~~P~~~~~~~~~~~i~~-------s~-gli~~~v~T~pv~lW~~~~s~ar~ek~~fd~~fGpf 354 (1201)
T KOG1933|consen 285 TFLEVFFRRWGTFCARNPLIVLYIILFVVIAL-------SS-GLIYFMVTTDPVDLWSLARSQARTEKSFFDTHFGPF 354 (1201)
T ss_pred HHHHHHhhhcccceecCchhhhHHHHHHHHHh-------cc-chhheeeeccchhhccCCcchhHHHHHHHhhhcCch
Confidence 57899999999999999999999888888888 55 778 45578999999999999999999999888753
No 6
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=93.10 E-value=0.058 Score=48.25 Aligned_cols=67 Identities=12% Similarity=-0.037 Sum_probs=49.4
Q ss_pred HHHHHhhhcCcceeeccceeehHHHHHHhhccCCCCccccceee-ecccccccccccCCCCCcHHHHHHHHhhhcCC
Q psy10743 9 FVIATNMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKV-APRLRLHMKLFSPQHGPGKTERAIVEQYFKMN 84 (128)
Q Consensus 9 ~~~~~F~~~G~~V~rhP~~FLi~PlllT~~L~~~~~~~g~~G~~-f~~~~D~eyLFTP~nspaK~Eravv~e~Fp~n 84 (128)
.+.+.++|+|.++.|||+..+++-+++++++ .. |.. .+...|. .-|-|.++|++...+.++++|+..
T Consensus 367 ~~~~~l~~~~~~~~r~~~~vl~v~lll~~~~-------~~-~~~~l~~~~d~-~~~~p~~s~~~~~~~~l~~~f~~~ 434 (719)
T TIGR00921 367 EIEEELSKVLSITVRHPVPALVAALIITGLG-------LY-GAAGIKPEVNI-EKFIPQDLPSLQARKVIESHMGGS 434 (719)
T ss_pred HHHHHHHHHHHHHHhCCcHhHHHHHHHHHHH-------HH-hccCCCcccCh-hhcCCCCcHHHHHHHHHHHHhCCC
Confidence 3456788999999999999888887777765 22 333 2223344 355699999999999999999853
No 7
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=87.04 E-value=0.37 Score=45.54 Aligned_cols=66 Identities=11% Similarity=-0.099 Sum_probs=46.9
Q ss_pred HHhhhcCcceeeccceeehHHHHHHhhccCCCCccccceeeecccccccccccCCCCCcHHHHHHHHhhhcCCC
Q psy10743 12 ATNMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKVAPRLRLHMKLFSPQHGPGKTERAIVEQYFKMNY 85 (128)
Q Consensus 12 ~~F~~~G~~V~rhP~~FLi~PlllT~~L~~~~~~~g~~G~~f~~~~D~eyLFTP~nspaK~Eravv~e~Fp~n~ 85 (128)
+.+.+++.++.|||+..+++-+++.+++ .. ++...+.+.....|-|.+.+++.-.+.++++||.+.
T Consensus 348 ~~~~~l~~~v~r~p~~vl~v~~~ll~~~-------~~-~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~f~~~~ 413 (910)
T TIGR00833 348 FIWRRLGTAVVRRPWPILVTTLIISGVS-------LL-ALPLIRTGYDDEKMIPTDLESVQGYEAADRHFPGNS 413 (910)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH-------HH-HhcCCCcCCCcHhhcCCCCcHHHHHHHHHHhCCCcc
Confidence 4688899999999998887776665554 11 333222232233456999999999999999998863
No 8
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=84.14 E-value=0.67 Score=44.25 Aligned_cols=68 Identities=15% Similarity=0.026 Sum_probs=52.0
Q ss_pred HHHhhhcCcceeeccceeehHHHHHHhhccCCCCccccceeeecccccccccccCCCCCcHHHHHHHHhhhcCCCC
Q psy10743 11 IATNMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKVAPRLRLHMKLFSPQHGPGKTERAIVEQYFKMNYS 86 (128)
Q Consensus 11 ~~~F~~~G~~V~rhP~~FLi~PlllT~~L~~~~~~~g~~G~~f~~~~D~eyLFTP~nspaK~Eravv~e~Fp~n~s 86 (128)
.+..++.|..|.|||+.+++..+++++++ .. .+..-+.+.....+-|.+.|++.=++.+.+|||.+..
T Consensus 358 ~~~w~~~~~~v~~~P~~~l~~s~~ill~~-------~l-~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~Fg~g~~ 425 (937)
T COG2409 358 SRFWRRVGTLVVRRPLAILVASLAILLVL-------AL-PLPLVRLGYDDRKTLPSSNPSRKGYAAADRHFGQGRL 425 (937)
T ss_pred cchhhhheeEEeeccHHHHHHHHHHHHHH-------HH-HhcccccCCcchhhccCccchhhHHHHHhhhcccccc
Confidence 45677899999999999999999888887 11 2222233333555669999999999999999998654
No 9
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=80.77 E-value=0.99 Score=42.63 Aligned_cols=69 Identities=10% Similarity=-0.024 Sum_probs=52.1
Q ss_pred HHHHHHhhhcCcceeeccceeehHHHHHHhhccCCCCccccceee-ecccccccccccCCCCCcHHHHHHHHhhhcCCC
Q psy10743 8 EFVIATNMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKV-APRLRLHMKLFSPQHGPGKTERAIVEQYFKMNY 85 (128)
Q Consensus 8 ~~~~~~F~~~G~~V~rhP~~FLi~PlllT~~L~~~~~~~g~~G~~-f~~~~D~eyLFTP~nspaK~Eravv~e~Fp~n~ 85 (128)
+.+...+.+.+.+..|||+.-|++=++++... .-|.. ...+.|.++ |-|+|.|++...+.++++|..++
T Consensus 366 ~~~~~~l~~i~~~~~~~~~~~L~vali~~~~~--------~yg~~~v~~~~d~~k-~~p~d~p~~~~~~~i~~~~ggs~ 435 (727)
T COG1033 366 GKLEKRLSKIAKIIARHPVTVLVVALIIVGVS--------LYGASKVKIETDIEK-YLPQDLPALKALDFIEKEFGGSD 435 (727)
T ss_pred hhHHHHHHHHHHHhHhhhHHHHHHHHHHHHHH--------HhhhhhcccccchHh-hcCCCcHHHHHHHHHHHHcCCCc
Confidence 45668889999999999987777766665553 11333 233567776 78999999999999999998863
No 10
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=76.98 E-value=1.8 Score=38.91 Aligned_cols=51 Identities=4% Similarity=-0.113 Sum_probs=40.6
Q ss_pred eccceeehHHHHHHhhccCCCCccccceee-ecccccccccccCCCCCcHHHHHHHHhhhc
Q psy10743 23 SCIGYFLILPYHVSLNQSREAPTLEMSCKV-APRLRLHMKLFSPQHGPGKTERAIVEQYFK 82 (128)
Q Consensus 23 rhP~~FLi~PlllT~~L~~~~~~~g~~G~~-f~~~~D~eyLFTP~nspaK~Eravv~e~Fp 82 (128)
||||..+++-+++++++ +. |+. .+..+|. ..|-|.|+|.+...+.+++.|+
T Consensus 2 ~~~~~v~~~~~~l~~~~-------~~-g~~~l~~~~~~-~~~~~~d~~~~~~~~~~~~~fg 53 (719)
T TIGR00921 2 RFRTAIILVFLALLILS-------AY-GAQHLNVESDT-EKQLPKDFESYKWYHVLQREFG 53 (719)
T ss_pred CCchhhHHHHHHHHHHH-------HH-hcccceeccCh-hhhCCCCCHHHHHHHHHHHHHC
Confidence 79999999999999987 44 555 4434455 4667999999999999999997
No 11
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=71.98 E-value=2.2 Score=41.43 Aligned_cols=30 Identities=3% Similarity=-0.164 Sum_probs=27.2
Q ss_pred HHHHhhhcCcceeeccceeehHHHHHHhhc
Q psy10743 10 VIATNMRVPLVDSSCIGYFLILPYHVSLNQ 39 (128)
Q Consensus 10 ~~~~F~~~G~~V~rhP~~FLi~PlllT~~L 39 (128)
+.++|.-+|+|+++|||=-|+.-+-+|+.+
T Consensus 2 ~~rlf~~hg~fcashpweviv~~~tlt~c~ 31 (886)
T TIGR00920 2 LSRLFRAHGQFCASHPWEVIVATLTLTICM 31 (886)
T ss_pred chhHhhhhcchhcCCCceehhhHHHHHHHH
Confidence 468999999999999999999988888876
No 12
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=56.51 E-value=4.1 Score=38.15 Aligned_cols=62 Identities=11% Similarity=0.040 Sum_probs=41.7
Q ss_pred hhcCcceeeccceeehHHHHHHhhccCCCCccccceee-ecccccccccccCCCCCcHHHHHHHHhhhcCC
Q psy10743 15 MRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKV-APRLRLHMKLFSPQHGPGKTERAIVEQYFKMN 84 (128)
Q Consensus 15 ~~~G~~V~rhP~~FLi~PlllT~~L~~~~~~~g~~G~~-f~~~~D~eyLFTP~nspaK~Eravv~e~Fp~n 84 (128)
.++=.++.||||+.+++-+++|+++ +..+.. +.-.+|...+.. .+.|.+.....+++.||..
T Consensus 3 ~~~~~~~~~~~~~vl~~~~~lt~~~-------~~~~~~~l~i~td~~~Llp-~~~~~~~~~~~~~~~f~~~ 65 (862)
T TIGR03480 3 VRLVGFCARHAWWVLAIALLLTALS-------VIYTVTNLSVNTDTSDLLS-PDLPFRQDERAYEKAFPQD 65 (862)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHH-------HHHHHHhceecCCHHHhcC-CCCchhHHHHHHHHhcCCc
Confidence 3444577899999998888888887 320111 233468888775 5668888667777788763
No 13
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=46.70 E-value=15 Score=34.08 Aligned_cols=36 Identities=8% Similarity=-0.068 Sum_probs=30.7
Q ss_pred eee-ecccccccccccCCCCCcHHHHHHHHhhhcCCCC
Q psy10743 50 CKV-APRLRLHMKLFSPQHGPGKTERAIVEQYFKMNYS 86 (128)
Q Consensus 50 G~~-f~~~~D~eyLFTP~nspaK~Eravv~e~Fp~n~s 86 (128)
|.. ....+|.+ .|+|.+++++.|....++|||.+.+
T Consensus 4 ~~~~~~tp~d~~-~~~~~~~~s~~e~~~~~~Ff~~~~~ 40 (798)
T PF02460_consen 4 DIEYLFTPDDIR-GYTERNSRSRREPEDSSEFFPSRGS 40 (798)
T ss_pred CcceecCCCCcc-ccCCCcchhhhhhhhHhhccCCCCC
Confidence 445 35568888 9999999999999999999999765
No 14
>KOG1935|consensus
Probab=42.08 E-value=8.1 Score=38.15 Aligned_cols=66 Identities=14% Similarity=0.003 Sum_probs=54.2
Q ss_pred hhchHHHHHHhhhcCcceeeccceeehHHHHHHhhccCCCCccccceee-ecccccccccccCCCCCcHHHHHHH
Q psy10743 4 LLAGEFVIATNMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKV-APRLRLHMKLFSPQHGPGKTERAIV 77 (128)
Q Consensus 4 ~~~~~~~~~~F~~~G~~V~rhP~~FLi~PlllT~~L~~~~~~~g~~G~~-f~~~~D~eyLFTP~nspaK~Eravv 77 (128)
|-.--++.+.-.++|-.|.||-|-+|++-+++-.++ +. |+- .+.+.|++.|..-++|+--.|-...
T Consensus 53 l~lRa~fQ~lLf~lGc~vqr~agkvlfv~~lif~~~-----~~---GLr~a~IeT~~~qLWV~~GgRl~~El~yt 119 (1143)
T KOG1935|consen 53 LYLRAFFQLLLFRLGCFVQRHAGKVLFVGLLIFGAF-----CV---GLRHATIETDLVQLWVEEGGRLSEELNYT 119 (1143)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHH-----Hh---hhhheeeeccHHHHHHHhccchhHhhccc
Confidence 334456677777899999999999999999988887 44 666 4668899999999999999997776
No 15
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=41.12 E-value=21 Score=34.07 Aligned_cols=57 Identities=9% Similarity=-0.023 Sum_probs=38.0
Q ss_pred eccceeehHHHHHHhhccCCCCccccceeeecccccccccccCCCCCcHHHHHHHHhhhcCCC
Q psy10743 23 SCIGYFLILPYHVSLNQSREAPTLEMSCKVAPRLRLHMKLFSPQHGPGKTERAIVEQYFKMNY 85 (128)
Q Consensus 23 rhP~~FLi~PlllT~~L~~~~~~~g~~G~~f~~~~D~eyLFTP~nspaK~Eravv~e~Fp~n~ 85 (128)
||||.-+++=+++.+++.-.+|.+ -....+...-+.|.++|++.-.+.+++.||...
T Consensus 1 r~~~~vi~~W~~~~~~~~~~~p~l------~~~~~~~~~~~~p~~~~s~~a~~~l~~~F~~~~ 57 (910)
T TIGR00833 1 RSAYGIIGVWIATAISLQLLAPLL------EDVSYFRLQAELPGGAASSIAVKEMSAAFQEAI 57 (910)
T ss_pred CcchhHHHHHHHHHHHHHhcCCCH------HHHhhhcCcCCCCCCcHHHHHHHHHHHhcCCCC
Confidence 688888887777777761112211 111223344677999999999999999998644
No 16
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=38.76 E-value=19 Score=34.58 Aligned_cols=64 Identities=13% Similarity=0.040 Sum_probs=44.8
Q ss_pred hhhcCcceeeccceeehHHHHHHhhccCCCCccccceeeecccccccccccCCCCCcHHHHHHHHhhhcC
Q psy10743 14 NMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKVAPRLRLHMKLFSPQHGPGKTERAIVEQYFKM 83 (128)
Q Consensus 14 F~~~G~~V~rhP~~FLi~PlllT~~L~~~~~~~g~~G~~f~~~~D~eyLFTP~nspaK~Eravv~e~Fp~ 83 (128)
++++|+++.||+|.-+++.+++++.+.--+|++ .....|....-.|.++|+-.=-+...+.|+.
T Consensus 3 ~~~~~r~i~r~~~~vi~~Wi~~~~~~~~~~p~l------~~~~~~~~~~~~p~~~~s~~a~~~~~~~f~~ 66 (937)
T COG2409 3 LFPIGRFIRRFAWAVILAWIALAVVLNLFAPTL------EALGQDKSVALLPDDAPSLVAMKLIGQAFNE 66 (937)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhccchh------hhhhhhcccccCCCCchHHHHHHHHhhhccC
Confidence 456999999999999999999999982222211 0001355666678888887766666677776
No 17
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.92 E-value=6.6 Score=31.47 Aligned_cols=50 Identities=26% Similarity=0.323 Sum_probs=30.9
Q ss_pred eeccceee-hHHHHHHhhccCCCCccccceeeecccccccccccCCCC-----CcHHHHHHHHhhhcCC
Q psy10743 22 SSCIGYFL-ILPYHVSLNQSREAPTLEMSCKVAPRLRLHMKLFSPQHG-----PGKTERAIVEQYFKMN 84 (128)
Q Consensus 22 ~rhP~~FL-i~PlllT~~L~~~~~~~g~~G~~f~~~~D~eyLFTP~ns-----paK~Eravv~e~Fp~n 84 (128)
-|||-+|+ ++|=++.+.| +.+..-..-+|+|.++ +=|+|.+++++.++.|
T Consensus 117 ~kHPNYflnIipEligl~L-------------l~~A~~Ta~l~~p~ya~~L~vRIr~EekaL~~~~~~~ 172 (172)
T COG1755 117 MKHPNYFLNIIPELIGLPL-------------LCQAWYTALLFSPIYALLLYVRIRQEEKALAELFIKN 172 (172)
T ss_pred ccCCcHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCC
Confidence 48999999 8886655444 1111112235555443 5688888888888754
No 18
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=34.06 E-value=20 Score=34.15 Aligned_cols=61 Identities=5% Similarity=-0.091 Sum_probs=40.1
Q ss_pred HhhhcCcceeeccceeehHHHHHHhhccCCCCccccceee-ecccccccccccCCCCCcHHHHHHHHhhhc
Q psy10743 13 TNMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKV-APRLRLHMKLFSPQHGPGKTERAIVEQYFK 82 (128)
Q Consensus 13 ~F~~~G~~V~rhP~~FLi~PlllT~~L~~~~~~~g~~G~~-f~~~~D~eyLFTP~nspaK~Eravv~e~Fp 82 (128)
.|.++++++.+||+.-+++=+++++++ .+ |.. ..-..+.+ .+-|.+.+...-...+++.|.
T Consensus 1 ~~~kl~~fi~~~r~~i~~~~~~l~i~~-------~~-~a~~l~~~s~~~-~~~~~d~~~~k~y~~~~~~f~ 62 (727)
T COG1033 1 MFEKLARFIIRRRKSIILIFLLLTILS-------AF-GAQNLEFDSGTE-TFLPKDNEEYKNYDRLYKEFG 62 (727)
T ss_pred ChHHHHHHHHhCccHHHHHHHHHHHHH-------HH-hhheeeecCCcc-ccCCCchHHHHHHHHHHHhhC
Confidence 378999999999988888888888887 33 333 22234534 444666666555566666664
No 19
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2.5.1.30 from EC) (approximately 230 residues long). The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis, the precursor for the side chain of the isoprenoid quinone menaquinone-7 (MQ-7) [, ].
Probab=28.20 E-value=29 Score=28.26 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=14.7
Q ss_pred chhhchHHHHHHhhhcC
Q psy10743 2 LALLAGEFVIATNMRVP 18 (128)
Q Consensus 2 ~~~~~~~~~~~~F~~~G 18 (128)
|..||||++...||.+=
T Consensus 71 LtVLAGDy~S~~yY~lL 87 (212)
T PF07307_consen 71 LTVLAGDYYSGLYYQLL 87 (212)
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 56899999999999863
No 20
>PF02157 Man-6-P_recep: Mannose-6-phosphate receptor; PDB: 2RLB_A 3K42_A 2RL9_A 3K43_A 1C39_A 1M6P_A 3CY4_A 1KEO_B 2RL7_D 2RL8_B ....
Probab=28.07 E-value=74 Score=27.22 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=35.9
Q ss_pred cccccccccCCCCCcHHHHHHHHhhhcCCCCcccCCCcccCCCceEEEEEEcC
Q psy10743 56 LRLHMKLFSPQHGPGKTERAIVEQYFKMNYSARFNPTRITRPDRFHLCIGFLG 108 (128)
Q Consensus 56 ~~D~eyLFTP~nspaK~Eravv~e~Fp~n~s~~F~p~Rl~t~grf~~vIv~s~ 108 (128)
+.+-=.|..+.+..++.|+++++.+=|+-+. .|...--.....|..++.+.+
T Consensus 29 ~~~~c~l~~~~~~es~~e~~ll~~l~pl~~~-~f~~~~~~g~d~ytY~f~vC~ 80 (278)
T PF02157_consen 29 EEKSCDLVGEKDKESESERALLKRLEPLFNK-SFESTVGQGSDNYTYIFRVCR 80 (278)
T ss_dssp ---S--BSSSTTSSHHHHHHHHHHTGGGTT--EEEEEESSTTSEEEEEEESSS
T ss_pred cCCccceecCCCcccHHHHHHHHhcccccCC-ceEeeecccCcceEEEEEEec
Confidence 4555678889999999999999999999654 676554444567777777754
No 21
>PRK04998 hypothetical protein; Provisional
Probab=27.55 E-value=97 Score=21.39 Aligned_cols=31 Identities=10% Similarity=0.156 Sum_probs=23.0
Q ss_pred HHHHHhhhcCCCCcccCCCcccCCCceEEEEEEc
Q psy10743 74 RAIVEQYFKMNYSARFNPTRITRPDRFHLCIGFL 107 (128)
Q Consensus 74 ravv~e~Fp~n~s~~F~p~Rl~t~grf~~vIv~s 107 (128)
.+++++++|..+. .-.|.+..|+|.+|-|..
T Consensus 33 ~~v~~~~~~~~~~---~~~r~S~~GkY~Svtv~v 63 (88)
T PRK04998 33 VEVVQRHAPGDYT---PTVKPSSKGNYHSVSITI 63 (88)
T ss_pred HHHHHHhCCCCCC---ceEccCCCCEEEEEEEEE
Confidence 3677888887432 337888999999998764
No 22
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=24.26 E-value=34 Score=25.26 Aligned_cols=32 Identities=9% Similarity=0.037 Sum_probs=27.7
Q ss_pred hHHHHHHhhhcCcceeeccceeehHHHHHHhh
Q psy10743 7 GEFVIATNMRVPLVDSSCIGYFLILPYHVSLN 38 (128)
Q Consensus 7 ~~~~~~~F~~~G~~V~rhP~~FLi~PlllT~~ 38 (128)
-||++.--.+.+.||-|+..||-+++++-+++
T Consensus 51 ~~W~~~k~k~~~~FV~RNk~W~T~~S~~tS~i 82 (100)
T PF06363_consen 51 KSWVKNKMKSMLSFVERNKAWFTVVSAVTSFI 82 (100)
T ss_pred HHHHHHHHHHHHHHHHHcchHhhHHHHHHHHH
Confidence 37888888999999999999999998876665
No 23
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=23.20 E-value=39 Score=29.89 Aligned_cols=40 Identities=10% Similarity=0.002 Sum_probs=25.8
Q ss_pred ceeeccceeehHHHHHHhhccCCCCccccceeee--cccccccccccCC
Q psy10743 20 VDSSCIGYFLILPYHVSLNQSREAPTLEMSCKVA--PRLRLHMKLFSPQ 66 (128)
Q Consensus 20 ~V~rhP~~FLi~PlllT~~L~~~~~~~g~~G~~f--~~~~D~eyLFTP~ 66 (128)
+.--.|.+.-++|+++|++| +..||.+ ..-+....++.|.
T Consensus 103 ~~~~ip~~~~ii~vi~t~il-------~y~G~~~~~k~~de~~~l~~~~ 144 (356)
T COG4956 103 FLLPIPFISTIIPVILTIIL-------AYFGFQLADKKRDEFLRLLNPN 144 (356)
T ss_pred hhCCccHHHhHHHHHHHHHH-------HHHhhHHhhhhhHHHHHhcchh
Confidence 33445666778999999999 6667773 2223345555553
Done!