Query psy10743
Match_columns 128
No_of_seqs 106 out of 121
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 17:25:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hgl_A Effector protein hopab2 23.5 40 0.0014 23.2 1.9 16 68-83 40-55 (85)
2 3tjy_A Effector protein hopab3 21.4 46 0.0016 23.3 1.9 16 68-83 38-53 (94)
3 2kzq_A Envelope glycoprotein E 20.1 15 0.0005 21.8 -0.8 22 42-64 2-25 (36)
4 4dx5_A Acriflavine resistance 15.7 37 0.0013 31.0 0.4 32 8-39 521-552 (1057)
5 3ne5_A Cation efflux system pr 14.9 59 0.002 29.7 1.5 32 8-39 526-557 (1054)
6 3aqb_A Component A of hexapren 14.2 57 0.0019 24.5 1.0 32 4-39 73-104 (147)
7 1rwu_A Hypothetical UPF0250 pr 10.4 2.2E+02 0.0076 19.7 3.1 31 74-107 54-84 (109)
8 1a6s_A GAG polyprotein; core p 10.4 1.5E+02 0.0052 20.3 2.1 42 61-103 13-54 (87)
9 2wbr_A GW182, gawky, LD47780P; 10.3 95 0.0032 20.9 1.1 19 6-24 20-38 (89)
10 2v50_A Multidrug resistance pr 8.7 1.1E+02 0.0036 28.1 1.0 29 10-38 523-551 (1052)
No 1
>3hgl_A Effector protein hopab2; five helices, hypersensitive response elicitation, ligase, secreted, UBL conjugation, UBL conjugation pathway; 1.90A {Pseudomonas syringae PV} PDB: 3hgk_E
Probab=23.54 E-value=40 Score=23.24 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=14.4
Q ss_pred CCcHHHHHHHHhhhcC
Q psy10743 68 GPGKTERAIVEQYFKM 83 (128)
Q Consensus 68 spaK~Eravv~e~Fp~ 83 (128)
+.++.|..++.||||.
T Consensus 40 alsr~e~~il~qHFPn 55 (85)
T 3hgl_A 40 AFSRVEQNIFRQHFPN 55 (85)
T ss_dssp CCCHHHHHHHHHHCTT
T ss_pred hhhHHHHHHHHHHChh
Confidence 5689999999999995
No 2
>3tjy_A Effector protein hopab3; type III effector, hoppmal, structural genomics, PSI-biology; HET: MSE; 1.70A {Pseudomonas syringae PV} PDB: 3svi_A
Probab=21.42 E-value=46 Score=23.27 Aligned_cols=16 Identities=19% Similarity=0.127 Sum_probs=14.3
Q ss_pred CCcHHHHHHHHhhhcC
Q psy10743 68 GPGKTERAIVEQYFKM 83 (128)
Q Consensus 68 spaK~Eravv~e~Fp~ 83 (128)
+.++.|..++.||||.
T Consensus 38 alsr~eq~Il~qHFPn 53 (94)
T 3tjy_A 38 ILSRAEQNVFLQHFPD 53 (94)
T ss_dssp CCCHHHHHHHHHHCTT
T ss_pred hhhHHHHHHHHHHCcc
Confidence 4589999999999995
No 3
>2kzq_A Envelope glycoprotein E2 peptide; membrane protein, E2 structural protein, HCV; NMR {Hepatitis c virus}
Probab=20.08 E-value=15 Score=21.78 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=15.9
Q ss_pred CCCccccceee-e-ccccccccccc
Q psy10743 42 EAPTLEMSCKV-A-PRLRLHMKLFS 64 (128)
Q Consensus 42 ~~~~~g~~G~~-f-~~~~D~eyLFT 64 (128)
.+|.+++ |+. . |.+-|+.|+|-
T Consensus 2 ~~palst-GliHlhqnivdvqylyG 25 (36)
T 2kzq_A 2 DLPALST-GLLHLHQNIVDVQYMYG 25 (36)
T ss_dssp CCSCCCC-HHHHHHHHHHTTTTTSC
T ss_pred Ccchhhc-cceehhhhhehheeeec
Confidence 3577777 877 3 66779989885
No 4
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=15.69 E-value=37 Score=31.03 Aligned_cols=32 Identities=13% Similarity=-0.027 Sum_probs=24.0
Q ss_pred HHHHHHhhhcCcceeeccceeehHHHHHHhhc
Q psy10743 8 EFVIATNMRVPLVDSSCIGYFLILPYHVSLNQ 39 (128)
Q Consensus 8 ~~~~~~F~~~G~~V~rhP~~FLi~PlllT~~L 39 (128)
+.+.+.+.++...+-|||+..+++.+++.++.
T Consensus 521 ~~~~~~y~~~l~~~lr~~~~~~~~~~~~l~~~ 552 (1057)
T 4dx5_A 521 EKSTHHYTDSVGGILRSTGRYLVLYLIIVVGM 552 (1057)
T ss_dssp HHHHHHHHHHHHHHHHSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44566778888888999999888776665543
No 5
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=14.89 E-value=59 Score=29.67 Aligned_cols=32 Identities=16% Similarity=0.029 Sum_probs=24.8
Q ss_pred HHHHHHhhhcCcceeeccceeehHHHHHHhhc
Q psy10743 8 EFVIATNMRVPLVDSSCIGYFLILPYHVSLNQ 39 (128)
Q Consensus 8 ~~~~~~F~~~G~~V~rhP~~FLi~PlllT~~L 39 (128)
.++.+.+.++...+-+||+..+++.+++.++.
T Consensus 526 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~l~~~ 557 (1054)
T 3ne5_A 526 RFLIRVYHPLLLKVLHWPKTTLLVAALSVLTV 557 (1054)
T ss_dssp HHHHHHHHHHHHHHTSSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45667788888888999999988877666554
No 6
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=14.23 E-value=57 Score=24.54 Aligned_cols=32 Identities=9% Similarity=-0.137 Sum_probs=21.0
Q ss_pred hhchHHHHHHhhhcCcceeeccceeehHHHHHHhhc
Q psy10743 4 LLAGEFVIATNMRVPLVDSSCIGYFLILPYHVSLNQ 39 (128)
Q Consensus 4 ~~~~~~~~~~F~~~G~~V~rhP~~FLi~PlllT~~L 39 (128)
.||||.+...||++=. .|..-..+.++-.++.
T Consensus 73 VLaGD~~Sa~fY~lLa----~~~~~~~i~~lS~aI~ 104 (147)
T 3aqb_A 73 VLSTDVLSALFYKYLS----QPFYQHDFLVLTDCVS 104 (147)
T ss_dssp HHHHHHHHHHHHHHTB----TTBCHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHHHc----ChhhHHHHHHHHHHHH
Confidence 4899999999999744 3444445555544443
No 7
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=10.44 E-value=2.2e+02 Score=19.67 Aligned_cols=31 Identities=10% Similarity=0.169 Sum_probs=23.2
Q ss_pred HHHHHhhhcCCCCcccCCCcccCCCceEEEEEEc
Q psy10743 74 RAIVEQYFKMNYSARFNPTRITRPDRFHLCIGFL 107 (128)
Q Consensus 74 ravv~e~Fp~n~s~~F~p~Rl~t~grf~~vIv~s 107 (128)
.+++++++|.+... -.|.+..|+|.+|-|.-
T Consensus 54 ~~vv~~~~p~d~~~---~~r~Ss~GkY~Svtv~v 84 (109)
T 1rwu_A 54 VEVVQRHAPGDYTP---TVKPSSKGNYHSVSITI 84 (109)
T ss_dssp HHHHHHHSSSCCCE---EEEESSCSSEEEEEEEE
T ss_pred HHHHHHhCCCCCCc---eecCCCCCeEEEEEEEE
Confidence 57889999953331 34888999999998764
No 8
>1a6s_A GAG polyprotein; core protein, virus structure, membrane binding, viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.61.1.4
Probab=10.42 E-value=1.5e+02 Score=20.33 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=31.7
Q ss_pred ccccCCCCCcHHHHHHHHhhhcCCCCcccCCCcccCCCceEEE
Q psy10743 61 KLFSPQHGPGKTERAIVEQYFKMNYSARFNPTRITRPDRFHLC 103 (128)
Q Consensus 61 yLFTP~nspaK~Eravv~e~Fp~n~s~~F~p~Rl~t~grf~~v 103 (128)
+.|.-.++|+|.|-..+-+..-..+- -=+|+.++++++.-.+
T Consensus 13 k~~cgk~spskKeI~a~LslL~kEg~-l~sPsdl~~~~~Wd~i 54 (87)
T 1a6s_A 13 KTYCGKTSPSKKEIGAMLSLLQKEGL-LMSPSDLYSPGSWDPI 54 (87)
T ss_dssp HHHHTTTSSCSSHHHHHHHTGGGTTC-TTCGGGGGSTTTTHHH
T ss_pred HHHcCCCCCcHHHHHHHHHHHHHccC-cCChhhccCCCcchHH
Confidence 35667789999999888877766443 5788999988876543
No 9
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=10.32 E-value=95 Score=20.95 Aligned_cols=19 Identities=16% Similarity=-0.043 Sum_probs=16.3
Q ss_pred chHHHHHHhhhcCcceeec
Q psy10743 6 AGEFVIATNMRVPLVDSSC 24 (128)
Q Consensus 6 ~~~~~~~~F~~~G~~V~rh 24 (128)
..|-+...|..+|.++.-|
T Consensus 20 te~~L~~lF~q~G~V~~~~ 38 (89)
T 2wbr_A 20 DGPTLRTLCMQHGPLVSFH 38 (89)
T ss_dssp CCHHHHHHHHHHSCEEEEE
T ss_pred CHHHHHHHHHhhCCEEEEE
Confidence 3578899999999999877
No 10
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=8.65 E-value=1.1e+02 Score=28.10 Aligned_cols=29 Identities=7% Similarity=-0.121 Sum_probs=20.5
Q ss_pred HHHHhhhcCcceeeccceeehHHHHHHhh
Q psy10743 10 VIATNMRVPLVDSSCIGYFLILPYHVSLN 38 (128)
Q Consensus 10 ~~~~F~~~G~~V~rhP~~FLi~PlllT~~ 38 (128)
+.+.+.++..++-+||+..+++-+++.++
T Consensus 523 ~~~~y~~~l~~~l~~~~~~l~~~~~l~~~ 551 (1052)
T 2v50_A 523 TTHGYERGVASILKHRAPYLLIYVVIVAG 551 (1052)
T ss_dssp HHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34456777778889999988876555444
Done!