Query psy10743
Match_columns 128
No_of_seqs 106 out of 121
Neff 4.1
Searched_HMMs 13730
Date Fri Aug 16 17:25:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10743.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10743hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wyub1 c.67.1.7 (B:2-472) Gly 11.3 36 0.0026 26.9 1.1 35 87-128 288-322 (471)
2 d1rwua_ d.58.54.1 (A:) Hypothe 10.4 1E+02 0.0075 18.4 2.9 31 74-107 32-62 (87)
3 d1h8pa1 g.14.1.2 (A:22-67) PDC 8.9 53 0.0039 18.4 0.9 6 122-127 37-42 (46)
4 d1z21a1 a.243.1.2 (A:42-145) Y 8.5 66 0.0048 21.2 1.4 11 74-84 56-66 (104)
5 d1izna_ e.43.1.1 (A:) Capz alp 7.8 83 0.0061 23.3 1.9 49 74-124 123-171 (275)
6 d1wxxa1 b.122.1.9 (A:1-64) Hyp 7.5 35 0.0026 20.2 -0.4 10 20-29 13-22 (64)
7 d1ku3a_ a.4.13.2 (A:) Sigma70 7.1 1.8E+02 0.013 16.4 2.9 22 66-87 6-27 (61)
8 d2ax3a1 c.72.1.4 (A:212-489) H 6.9 1.5E+02 0.011 21.0 3.0 30 74-110 2-31 (278)
9 d2g7oa1 a.241.1.1 (A:60-127) T 6.6 1.1E+02 0.0077 18.6 1.6 12 75-86 56-67 (68)
10 d2apob1 g.41.16.1 (B:403-457) 6.6 1.8E+02 0.013 16.8 2.6 21 60-80 31-51 (55)
No 1
>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}
Probab=11.26 E-value=36 Score=26.89 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=26.1
Q ss_pred cccCCCcccCCCceEEEEEEcCceeeecCccceeEeeeccCC
Q psy10743 87 ARFNPTRITRPDRFHLCIGFLGTYCIADGTQSIWRYQYCSNS 128 (128)
Q Consensus 87 ~~F~p~Rl~t~grf~~vIv~s~~~~~~~~~~~~~~~~~~~~~ 128 (128)
.++.|+|+...++...+.. ....|.|=|-+-|+|+
T Consensus 288 ~R~~PGRiV~~~~~~~~~~-------~~REqhIrRe~actnq 322 (471)
T d1wyub1 288 APYLPVPLVERGEEGFYLD-------FDRPKSIGRVRSFYGN 322 (471)
T ss_dssp GGGCCSCEEEECSSCEEEE-------CCCTTCCCCSSSTTSC
T ss_pred hccCCCceecCCCcccccc-------CCCcccccchhhhhhh
Confidence 4789999988777766543 3477778888889884
No 2
>d1rwua_ d.58.54.1 (A:) Hypothetical protein ybeD {Escherichia coli [TaxId: 562]}
Probab=10.36 E-value=1e+02 Score=18.36 Aligned_cols=31 Identities=10% Similarity=0.156 Sum_probs=23.2
Q ss_pred HHHHHhhhcCCCCcccCCCcccCCCceEEEEEEc
Q psy10743 74 RAIVEQYFKMNYSARFNPTRITRPDRFHLCIGFL 107 (128)
Q Consensus 74 ravv~e~Fp~n~s~~F~p~Rl~t~grf~~vIv~s 107 (128)
.+++++|.|..+. .-.|.+..|+|.+|-+.-
T Consensus 32 ~~i~~~~~~~~~~---~~~k~Ss~GkY~Svtv~i 62 (87)
T d1rwua_ 32 VEVVQRHAPGDYT---PTVKPSSKGNYHSVSITI 62 (87)
T ss_dssp HHHHHHHSSSCCC---EEEEESSCSSEEEEEEEE
T ss_pred HHHHHHhCCCCCc---ceeecCCCCcEEEEEEEE
Confidence 4788889985433 235788999999998864
No 3
>d1h8pa1 g.14.1.2 (A:22-67) PDC-109, collagen-binding type II domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.92 E-value=53 Score=18.36 Aligned_cols=6 Identities=33% Similarity=1.481 Sum_probs=3.5
Q ss_pred eeeccC
Q psy10743 122 YQYCSN 127 (128)
Q Consensus 122 ~~~~~~ 127 (128)
.+||+.
T Consensus 37 W~yC~~ 42 (46)
T d1h8pa1 37 WKYCAQ 42 (46)
T ss_dssp EEECCG
T ss_pred cccCCC
Confidence 456764
No 4
>d1z21a1 a.243.1.2 (A:42-145) Yop proteins translocation protein H, YscH (IcrP) {Yersinia pestis [TaxId: 632]}
Probab=8.53 E-value=66 Score=21.20 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=9.8
Q ss_pred HHHHHhhhcCC
Q psy10743 74 RAIVEQYFKMN 84 (128)
Q Consensus 74 ravv~e~Fp~n 84 (128)
|++++||||.+
T Consensus 56 ra~lrEf~P~g 66 (104)
T d1z21a1 56 RSVLQQFDSFG 66 (104)
T ss_dssp HHHHHHHSCSS
T ss_pred HHHHHHhCcch
Confidence 78999999985
No 5
>d1izna_ e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=7.78 E-value=83 Score=23.32 Aligned_cols=49 Identities=10% Similarity=0.159 Sum_probs=25.0
Q ss_pred HHHHHhhhcCCCCcccCCCcccCCCceEEEEEEcCceeeecCccceeEeee
Q psy10743 74 RAIVEQYFKMNYSARFNPTRITRPDRFHLCIGFLGTYCIADGTQSIWRYQY 124 (128)
Q Consensus 74 ravv~e~Fp~n~s~~F~p~Rl~t~grf~~vIv~s~~~~~~~~~~~~~~~~~ 124 (128)
.+.+++|+|.....-|- +........-++|++..+.--.=-...||-.|
T Consensus 123 ~~Yv~~hYp~g~~~vy~--~~~~~~~~l~i~I~~~~~~p~NFwnG~WrS~w 171 (275)
T d1izna_ 123 RAYVKDHYPNGFCTVYG--KSIDGQQTIIACIESHQFQPKNFWNGRWRSEW 171 (275)
T ss_dssp HHHHHHHCTTEEEEEEE--EEETTEEEEEEEEEEEEEEGGGTEEEEEEEEE
T ss_pred HHHHHHhCCCCceEEEc--cCCCCCceEEEEEEeCcCCcccccCceeEEEE
Confidence 35578899875442231 11222223334444555555554556777665
No 6
>d1wxxa1 b.122.1.9 (A:1-64) Hypothetical protein TTHA1280, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=7.51 E-value=35 Score=20.16 Aligned_cols=10 Identities=20% Similarity=0.036 Sum_probs=6.1
Q ss_pred ceeeccceee
Q psy10743 20 VDSSCIGYFL 29 (128)
Q Consensus 20 ~V~rhP~~FL 29 (128)
+-..|||.|=
T Consensus 13 l~~gHPWVf~ 22 (64)
T d1wxxa1 13 LLSRHLWVFR 22 (64)
T ss_dssp HHTTCCEECG
T ss_pred hhcCCccchh
Confidence 3456777763
No 7
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=7.10 E-value=1.8e+02 Score=16.36 Aligned_cols=22 Identities=5% Similarity=-0.082 Sum_probs=17.9
Q ss_pred CCCCcHHHHHHHHhhhcCCCCc
Q psy10743 66 QHGPGKTERAIVEQYFKMNYSA 87 (128)
Q Consensus 66 ~nspaK~Eravv~e~Fp~n~s~ 87 (128)
.+.....||.+++-+|..++.+
T Consensus 6 L~~L~~rer~Ii~~ryGl~~~~ 27 (61)
T d1ku3a_ 6 LSKLSEREAMVLKMRKGLIDGR 27 (61)
T ss_dssp TTTSCHHHHHHHHHHHTTTTSS
T ss_pred HhcCCHHHHHHHHHHhCCCCCC
Confidence 3567889999999999987653
No 8
>d2ax3a1 c.72.1.4 (A:212-489) Hypothetical protein TM0922, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=6.86 E-value=1.5e+02 Score=20.99 Aligned_cols=30 Identities=10% Similarity=0.165 Sum_probs=20.3
Q ss_pred HHHHHhhhcCCCCcccCCCcccCCCceEEEEEEcCce
Q psy10743 74 RAIVEQYFKMNYSARFNPTRITRPDRFHLCIGFLGTY 110 (128)
Q Consensus 74 ravv~e~Fp~n~s~~F~p~Rl~t~grf~~vIv~s~~~ 110 (128)
++++++++|....+ ..-+.+++|.|++++.
T Consensus 2 ~~~~~~~lP~r~~~-------~hKg~~G~vliIgGS~ 31 (278)
T d2ax3a1 2 REMVRSLLPERPRD-------SHKGTYGKVLIIAGSR 31 (278)
T ss_dssp HHHHHHHSCCCCSS-------CCGGGGCEEEEECCCS
T ss_pred hHHHHHhcCCCCcc-------cCCccCCeEEEEECCC
Confidence 45677777764332 3367889999998754
No 9
>d2g7oa1 a.241.1.1 (A:60-127) TraM {Escherichia coli [TaxId: 562]}
Probab=6.57 E-value=1.1e+02 Score=18.62 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=9.7
Q ss_pred HHHHhhhcCCCC
Q psy10743 75 AIVEQYFKMNYS 86 (128)
Q Consensus 75 avv~e~Fp~n~s 86 (128)
..++.|||.||.
T Consensus 56 ~~m~~fFpende 67 (68)
T d2g7oa1 56 SEMERFFPKNDD 67 (68)
T ss_dssp HHHHHHSCSCTT
T ss_pred HHHHHhcccccC
Confidence 567889999875
No 10
>d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=6.55 E-value=1.8e+02 Score=16.81 Aligned_cols=21 Identities=24% Similarity=0.184 Sum_probs=15.8
Q ss_pred cccccCCCCCcHHHHHHHHhh
Q psy10743 60 MKLFSPQHGPGKTERAIVEQY 80 (128)
Q Consensus 60 eyLFTP~nspaK~Eravv~e~ 80 (128)
---|||.|--+|+-|.+=++.
T Consensus 31 P~rfSPeDky~~~Rr~lKk~~ 51 (55)
T d2apob1 31 PPKFSLEDRWGKYRRMLKRAL 51 (55)
T ss_dssp CCCCCTTCTTHHHHHHHHHHH
T ss_pred CCCCCCCcchHHHHHHHHHHH
Confidence 346999999999887665543
Done!