BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>psy10743
MLALLAGEFVIATNMRVPLVDSSCIGYFLILPYHVSLNQSREAPTLEMSCKVAPRLRLHM
KLFSPQHGPGKTERAIVEQYFKMNYSARFNPTRITRPDRFHLCIGFLGTYCIADGTQSIW
RYQYCSNS

High Scoring Gene Products

Symbol, full name Information P value
Ptr
Patched-related 		protein from Drosophila melanogaster 6.2e-10

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy10743
        (128 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0262867 - symbol:Ptr "Patched-related" species:722...   156  6.2e-10   1


>FB|FBgn0262867 [details] [associations]
            symbol:Ptr "Patched-related" species:7227 "Drosophila
            melanogaster" [GO:0005886 "plasma membrane" evidence=ISS]
            [GO:0004872 "receptor activity" evidence=NAS] [GO:0010004
            "gastrulation involving germ band extension" evidence=IMP]
            [GO:0016324 "apical plasma membrane" evidence=IDA] [GO:0016328
            "lateral plasma membrane" evidence=IDA] [GO:0016021 "integral to
            membrane" evidence=IEA] [GO:0008158 "hedgehog receptor activity"
            evidence=IEA] InterPro:IPR000731 InterPro:IPR003392 Pfam:PF02460
            PROSITE:PS50156 EMBL:AE013599 GO:GO:0016021 GO:GO:0004872
            GO:GO:0008158 eggNOG:NOG149152 GeneTree:ENSGT00680000099845
            EMBL:BT003500 RefSeq:NP_001246145.1 RefSeq:NP_001246146.1
            RefSeq:NP_610209.2 UniGene:Dm.17870 IntAct:Q86P36 STRING:Q86P36
            EnsemblMetazoa:FBtr0086003 EnsemblMetazoa:FBtr0307500
            EnsemblMetazoa:FBtr0307501 GeneID:35546 KEGG:dme:Dmel_CG11212
            UCSC:CG11212-RA CTD:19284 FlyBase:FBgn0262867 InParanoid:Q86P36
            OMA:PGYFIII OrthoDB:EOG4KD51X ChiTaRS:PTCHD3 GenomeRNAi:35546
            NextBio:793966 Uniprot:Q86P36
        Length = 1169

 Score = 156 (60.0 bits), Expect = 6.2e-10, P = 6.2e-10
 Identities = 38/75 (50%), Positives = 46/75 (61%)

Query:    26 GYFLILPYHVSLNQSREAPTLEMSCKVAPRLRLHMKLFSPQHGPGKTERAIVEQYFKMNY 85
             GYF+I+P  V L         ++  ++ P       LFSP  G GKTERAIVEQYFK+NY
Sbjct:    28 GYFIIIP--VLLTLLCMTGYQQLKYQIDPEY-----LFSPIAGEGKTERAIVEQYFKVNY 80

Query:    86 SARFNPTRITRPDRF 100
             + RFN  RITRP RF
Sbjct:    81 THRFNVGRITRPGRF 95


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.139   0.442    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      128       128   0.00091  102 3  11 22  0.45    30
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  578 (61 KB)
  Total size of DFA:  139 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.51u 0.10s 12.61t   Elapsed:  00:00:15
  Total cpu time:  12.51u 0.10s 12.61t   Elapsed:  00:00:15
  Start:  Thu Aug 15 14:04:34 2013   End:  Thu Aug 15 14:04:49 2013

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