RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10743
(128 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 6e-04
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 42/117 (35%)
Query: 1 MLALLAG-------EFVIATNMRVPLVDSSCIGYFLILPYHVSLNQSREA-----PTLEM 48
ML++ + ++V TN +P + +SL + P +
Sbjct: 338 MLSI-SNLTQEQVQDYVNKTNSHLP--AGKQV--------EISLVNGAKNLVVSGPPQSL 386
Query: 49 SCKVAPRLRLHMKLFSP----QHGPGKTERAIVEQYFKMNYSARFNPTRITRPDRFH 101
+ LR K +P Q +ER K+ +S RF P + P FH
Sbjct: 387 -YGLNLTLR---KAKAPSGLDQSRIPFSER-------KLKFSNRFLP--VASP--FH 428
Score = 26.9 bits (59), Expect = 2.0
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 67 HGPGKTERAIVEQYFKMNYSARFNPTRITRP 97
H G+ + I E Y M + + T
Sbjct: 1675 HFGGEKGKRIRENYSAMIFETIVDGKLKTEK 1705
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.001
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 10/40 (25%)
Query: 39 QSREAPTLEMSCKVAPRLRLHMKLFSPQHGPGKTERAIVE 78
+ + L+ S +KL++ P +A +E
Sbjct: 18 EKQALKKLQAS----------LKLYADDSAPALAIKATME 47
>3ue9_A Adenylosuccinate synthetase; ssgcid, ligase, ADSS, BTH_I2245,
IMP-aspartate ligase, struc genomics; 1.95A
{Burkholderia thailandensis}
Length = 452
Score = 29.8 bits (68), Expect = 0.24
Identities = 10/15 (66%), Positives = 15/15 (100%)
Query: 29 LILPYHVSLNQSREA 43
LILPYH++++Q+REA
Sbjct: 119 LILPYHIAIDQAREA 133
>3hid_A Adenylosuccinate synthetase; niaid structural genomics, virulence
associated factor, PURA, purine ribonucleotide
biosynthesis, cytoplasm; 1.60A {Yersinia pestis CO92}
PDB: 1kjx_A* 1kkb_A* 1kkf_A* 1ade_A 1adi_A 1cg0_A*
1ch8_A* 1cib_A* 1gim_A* 1gin_A* 1hon_A* 1hoo_A* 1hop_A*
1juy_A* 1ksz_A* 1nht_A* 1qf4_A* 1qf5_A* 1son_A* 1soo_A*
...
Length = 432
Score = 29.7 bits (68), Expect = 0.24
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 29 LILPYHVSLNQSREA 43
LILPYHV+L+ +RE
Sbjct: 106 LILPYHVALDNAREK 120
>3r7t_A Adenylosuccinate synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
fold, cytosol; HET: CIT PGE; 2.30A {Campylobacter
jejuni}
Length = 419
Score = 29.3 bits (67), Expect = 0.27
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 29 LILPYHVSLNQSREA 43
L L +H ++ ++E
Sbjct: 105 LNLKHHSLIDIAKEK 119
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 0.70
Identities = 20/99 (20%), Positives = 32/99 (32%), Gaps = 34/99 (34%)
Query: 17 VPLVDSSCIGYFLIL----PYHVSLNQSREAPTLEMSCKVAPRLRLHMKLFSPQHGPGKT 72
V +V + Y L+ +S+ LE+ K+ LH
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSI----YLELKVKLENEYALH------------- 446
Query: 73 ERAIVEQYFKMNYSARFNPTRITRP--DR-------FHL 102
R+IV+ Y N F+ + P D+ HL
Sbjct: 447 -RSIVDHY---NIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
>2v40_A Adenylosuccinate synthetase isozyme 2; ligase, purine biosynthesis,
metal- binding, purine metabolism, nucleotide-binding,
GDP, ADSS2, magnesium; HET: GDP; 1.9A {Homo sapiens}
PDB: 1iwe_A* 1j4b_A 1lny_A* 1lon_A* 1loo_A* 1mez_A*
1mf0_A* 1mf1_A* 2dgn_A*
Length = 459
Score = 28.3 bits (64), Expect = 0.78
Identities = 2/15 (13%), Positives = 8/15 (53%)
Query: 29 LILPYHVSLNQSREA 43
++ +H + + +E
Sbjct: 138 IVFDFHQAADGIQEQ 152
>1dj2_A Adenylosuccinate synthetase; GDP, ligase; HET: GDP; 2.90A
{Arabidopsis thaliana} SCOP: c.37.1.10 PDB: 1dj3_A*
Length = 443
Score = 27.8 bits (63), Expect = 0.84
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 29 LILPYHVSLNQSREA 43
L+ +H ++ RE+
Sbjct: 124 LLFDFHQEVDGLRES 138
>1p9b_A Adenylosuccinate synthetase; ligase; HET: IMO GDP; 2.00A
{Plasmodium falciparum} SCOP: c.37.1.10
Length = 442
Score = 27.9 bits (63), Expect = 0.88
Identities = 2/15 (13%), Positives = 7/15 (46%)
Query: 29 LILPYHVSLNQSREA 43
++ H ++ +E
Sbjct: 115 ILFDIHQIIDSIQET 129
>3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_C*
Length = 1342
Score = 27.0 bits (60), Expect = 2.2
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 18/40 (45%)
Query: 72 TERAIVEQ-------YF-----------KMNYSARFNPTR 93
TER IV Q +F K+ Y+AR P R
Sbjct: 141 TERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180
>1xkr_A Chemotaxis protein CHEC; signal transduction, protein phosphatase,
attractant; 1.75A {Thermotoga maritima} SCOP: d.252.1.1
PDB: 2f9z_A
Length = 206
Score = 26.5 bits (58), Expect = 2.4
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 9 FVIATNMRVPLVDSSCIGYFLILPYHVSLNQ 39
+ T ++V + Y +++P L +
Sbjct: 167 VFVETLLKVEEEEEPLTSYMMMIPKPGYLVK 197
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 25.4 bits (55), Expect = 7.9
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 80 YFKMNYSARFNPTRITRPDRFHLCIGFLGTYCIADGTQSI 119
++ P + G + Y + DG+ SI
Sbjct: 217 IEGVDAEDGHGPGEQQKRKIVLDPSGSMNIYLVLDGSGSI 256
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 24.7 bits (53), Expect = 8.1
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 73 ERAIVEQYFKMNYSARFNPT--RITRPDRFHLCIGFLGTYCIADGTQSIWRYQYC 125
ER E +Y+ R T I R L G L + +++GT+++ +Y
Sbjct: 69 ERIAAEASRLAHYNKRSTITSREIQTAVRL-LLPGELAKHAVSEGTKAVTKYTSS 122
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.139 0.442
Gapped
Lambda K H
0.267 0.0843 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,936,109
Number of extensions: 98553
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 17
Length of query: 128
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 45
Effective length of database: 4,384,350
Effective search space: 197295750
Effective search space used: 197295750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.2 bits)