RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10743
         (128 letters)



>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding
           protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 529

 Score = 28.8 bits (64), Expect = 0.17
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 5/84 (5%)

Query: 11  IATNMRVPLVDSSCIGY----FLILPYHVSLNQSREAPTLE-MSCKVAPRLRLHMKLFSP 65
           +  N ++PL+     G      +I+  H  +    +    +    K  P LR H + +  
Sbjct: 137 VLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHFQSYDL 196

Query: 66  QHGPGKTERAIVEQYFKMNYSARF 89
            H   K             Y A++
Sbjct: 197 DHMEKKDHSHTPWIVIIAKYLAQW 220


>d1phoa_ f.4.3.1 (A:) Porin {Escherichia coli, different sequences
           [TaxId: 562]}
          Length = 330

 Score = 25.3 bits (54), Expect = 3.0
 Identities = 6/21 (28%), Positives = 8/21 (38%)

Query: 104 IGFLGTYCIADGTQSIWRYQY 124
            GF G   I D      R++ 
Sbjct: 38  FGFKGETQINDQLTGYGRWEA 58


>d1jb7b_ b.40.4.3 (B:) Core domain of telomere end binding protein
           beta subunit {Oxytricha nova [TaxId: 200597]}
          Length = 216

 Score = 24.3 bits (52), Expect = 4.6
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 4/36 (11%)

Query: 73  ERAIVEQYFKMNYSARFNPTR----ITRPDRFHLCI 104
           E  ++   FK N   R NPTR    + R D F   I
Sbjct: 105 EARLIVHSFKPNLQERLNPTRYPVNLFRDDEFKTTI 140


>d1xkra_ d.252.1.1 (A:) Chemotaxis protein CheC {Thermotoga maritima
           [TaxId: 2336]}
          Length = 205

 Score = 24.1 bits (52), Expect = 6.0
 Identities = 4/24 (16%), Positives = 11/24 (45%)

Query: 9   FVIATNMRVPLVDSSCIGYFLILP 32
             + T ++V   +     Y +++P
Sbjct: 167 VFVETLLKVEEEEEPLTSYMMMIP 190


>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable
           domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId:
           10090]}
          Length = 118

 Score = 23.1 bits (49), Expect = 9.2
 Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 1/85 (1%)

Query: 45  TLEMSCKVAPRLRLHMKLFSPQHGPGKT-ERAIVEQYFKMNYSARFNPTRITRPDRFHLC 103
           +L +SC+ +        +   +  P    E      Y  + Y +     R T        
Sbjct: 17  SLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRN 76

Query: 104 IGFLGTYCIADGTQSIWRYQYCSNS 128
           I  L    +     +I+     ++ 
Sbjct: 77  ILTLQMSRLRSEDTAIYYCARGTSF 101


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.139    0.442 

Gapped
Lambda     K      H
   0.267   0.0594    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 480,612
Number of extensions: 20110
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 6
Length of query: 128
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,377,846
Effective search space: 73025838
Effective search space used: 73025838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (22.6 bits)