Query psy10745
Match_columns 197
No_of_seqs 201 out of 283
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 17:28:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10745.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10745hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pdn_C Protein (PRD paired); p 99.1 1E-10 3.4E-15 85.1 4.2 64 118-181 1-64 (128)
2 1k78_A Paired box protein PAX5 98.9 2.1E-09 7.3E-14 82.2 5.2 64 117-180 15-78 (149)
3 2k27_A Paired box protein PAX- 98.4 2.9E-07 1E-11 71.3 4.2 64 117-180 8-71 (159)
4 1tc3_C Protein (TC3 transposas 98.4 2.9E-07 9.8E-12 56.6 3.4 47 132-178 1-49 (51)
5 1pdn_C Protein (PRD paired); p 98.3 2.6E-07 8.8E-12 66.9 3.0 72 13-84 55-126 (128)
6 1k78_A Paired box protein PAX5 98.2 1E-06 3.5E-11 67.2 4.6 72 13-84 70-141 (149)
7 2k27_A Paired box protein PAX- 98.2 8.6E-07 2.9E-11 68.7 3.4 72 13-84 63-134 (159)
8 1jko_C HIN recombinase, DNA-in 97.4 5.3E-05 1.8E-09 47.1 2.0 41 135-175 6-46 (52)
9 1u78_A TC3 transposase, transp 97.4 0.00011 3.8E-09 54.3 3.6 46 133-178 5-50 (141)
10 1ic8_A Hepatocyte nuclear fact 97.2 2.3E-05 7.7E-10 65.5 -1.8 48 36-83 14-65 (194)
11 2x48_A CAG38821; archeal virus 96.8 0.00053 1.8E-08 44.2 2.0 39 135-173 14-54 (55)
12 2h8r_A Hepatocyte nuclear fact 96.0 0.00057 1.9E-08 58.5 -1.8 48 36-83 15-66 (221)
13 1hlv_A CENP-B, major centromer 96.0 0.0056 1.9E-07 45.3 3.8 44 133-176 6-51 (131)
14 2elh_A CG11849-PA, LD40883P; s 95.9 0.01 3.5E-07 42.1 4.8 45 133-177 21-65 (87)
15 2glo_A Brinker CG9653-PA; prot 94.8 0.021 7.1E-07 37.7 3.0 45 134-178 5-53 (59)
16 2jn6_A Protein CGL2762, transp 94.6 0.02 6.9E-07 40.6 2.8 46 133-178 4-51 (97)
17 2jpc_A SSRB; DNA binding prote 94.4 0.027 9.2E-07 36.4 2.8 37 141-177 4-40 (61)
18 1je8_A Nitrate/nitrite respons 94.1 0.036 1.2E-06 38.8 3.2 43 134-177 21-63 (82)
19 1fse_A GERE; helix-turn-helix 94.1 0.038 1.3E-06 36.6 3.2 42 134-176 11-52 (74)
20 2o8x_A Probable RNA polymerase 93.9 0.05 1.7E-06 35.6 3.4 42 135-177 16-58 (70)
21 1u78_A TC3 transposase, transp 93.8 0.036 1.2E-06 40.6 2.9 59 13-84 44-102 (141)
22 3mzy_A RNA polymerase sigma-H 93.8 0.043 1.5E-06 40.3 3.2 42 134-176 109-150 (164)
23 3hot_A Transposable element ma 93.7 0.063 2.2E-06 45.1 4.4 51 134-185 6-63 (345)
24 1y0u_A Arsenical resistance op 93.5 0.041 1.4E-06 38.9 2.7 45 134-178 27-71 (96)
25 3uj3_X DNA-invertase; helix-tu 93.2 0.016 5.4E-07 46.1 0.0 44 135-178 143-186 (193)
26 3pqk_A Biofilm growth-associat 92.9 0.065 2.2E-06 38.1 2.9 44 135-178 20-64 (102)
27 2heo_A Z-DNA binding protein 1 92.8 0.042 1.4E-06 37.6 1.6 42 138-179 10-54 (67)
28 3cuo_A Uncharacterized HTH-typ 92.6 0.041 1.4E-06 38.1 1.5 44 135-178 21-66 (99)
29 3hug_A RNA polymerase sigma fa 92.5 0.099 3.4E-06 36.8 3.4 41 135-176 38-79 (92)
30 2jsc_A Transcriptional regulat 92.3 0.09 3.1E-06 38.9 3.1 43 135-177 18-61 (118)
31 1p4w_A RCSB; solution structur 92.2 0.1 3.4E-06 38.4 3.2 45 132-177 32-76 (99)
32 2rnj_A Response regulator prot 92.1 0.11 3.6E-06 36.7 3.1 43 134-177 29-71 (91)
33 2zkz_A Transcriptional repress 92.1 0.042 1.4E-06 39.5 1.0 43 135-177 24-68 (99)
34 1ku3_A Sigma factor SIGA; heli 92.1 0.13 4.4E-06 34.7 3.4 42 135-177 11-57 (73)
35 2p7v_B Sigma-70, RNA polymeras 92.0 0.11 3.6E-06 34.7 2.9 43 135-178 6-53 (68)
36 1r1u_A CZRA, repressor protein 91.7 0.12 4.1E-06 37.2 3.1 43 135-177 23-66 (106)
37 1tty_A Sigma-A, RNA polymerase 91.3 0.16 5.6E-06 35.6 3.4 42 135-177 19-65 (87)
38 2q1z_A RPOE, ECF SIGE; ECF sig 91.3 0.23 7.9E-06 37.6 4.5 41 135-176 136-177 (184)
39 3c57_A Two component transcrip 91.2 0.12 4.1E-06 37.1 2.6 41 135-176 28-68 (95)
40 2oqg_A Possible transcriptiona 91.2 0.12 4E-06 36.9 2.5 44 135-178 18-62 (114)
41 1s7o_A Hypothetical UPF0122 pr 91.1 0.17 5.9E-06 37.9 3.5 43 134-176 22-64 (113)
42 3jth_A Transcription activator 90.8 0.093 3.2E-06 36.9 1.7 44 135-178 20-64 (98)
43 2htj_A P fimbrial regulatory p 90.7 0.11 3.9E-06 35.8 2.0 40 140-179 2-43 (81)
44 1gdt_A GD resolvase, protein ( 90.6 0.11 3.8E-06 40.8 2.2 41 132-173 141-181 (183)
45 1x3u_A Transcriptional regulat 90.5 0.17 5.7E-06 34.0 2.7 42 135-177 17-58 (79)
46 1ub9_A Hypothetical protein PH 90.3 0.065 2.2E-06 37.0 0.5 45 134-178 12-58 (100)
47 3plo_X DNA-invertase; resolvas 90.1 0.056 1.9E-06 43.1 0.0 46 131-176 137-184 (193)
48 2lkp_A Transcriptional regulat 90.1 0.15 5.2E-06 36.9 2.3 46 136-182 30-76 (119)
49 3ulq_B Transcriptional regulat 90.0 0.18 6E-06 36.3 2.6 43 134-177 29-71 (90)
50 3f6o_A Probable transcriptiona 90.0 0.14 4.7E-06 37.7 2.1 43 135-177 15-58 (118)
51 3hot_A Transposable element ma 89.9 0.16 5.5E-06 42.5 2.7 57 13-84 51-109 (345)
52 2kko_A Possible transcriptiona 89.8 0.065 2.2E-06 39.1 0.2 44 135-178 22-66 (108)
53 1r1t_A Transcriptional repress 89.8 0.16 5.4E-06 38.1 2.3 42 135-176 43-85 (122)
54 1rp3_A RNA polymerase sigma fa 89.8 0.24 8.1E-06 38.7 3.4 41 135-176 188-229 (239)
55 1u2w_A CADC repressor, cadmium 89.6 0.098 3.4E-06 38.9 1.0 43 135-177 39-83 (122)
56 2d1h_A ST1889, 109AA long hypo 89.6 0.18 6.1E-06 34.8 2.3 45 134-178 18-64 (109)
57 1or7_A Sigma-24, RNA polymeras 89.2 0.28 9.7E-06 37.3 3.4 41 135-176 141-182 (194)
58 2w7n_A TRFB transcriptional re 89.1 0.34 1.1E-05 36.6 3.6 43 134-177 18-61 (101)
59 1xsv_A Hypothetical UPF0122 pr 88.7 0.33 1.1E-05 36.1 3.4 41 135-176 26-67 (113)
60 3f6v_A Possible transcriptiona 88.5 0.15 5.2E-06 39.8 1.4 45 134-178 54-99 (151)
61 2rn7_A IS629 ORFA; helix, all 88.5 0.16 5.3E-06 36.5 1.4 47 133-179 5-59 (108)
62 1iuf_A Centromere ABP1 protein 87.1 0.31 1.1E-05 37.4 2.4 44 133-176 10-62 (144)
63 2q0o_A Probable transcriptiona 86.8 0.45 1.6E-05 38.5 3.4 44 133-177 174-217 (236)
64 1l3l_A Transcriptional activat 86.5 0.46 1.6E-05 38.4 3.3 44 133-177 172-215 (234)
65 1jhg_A Trp operon repressor; c 86.4 0.38 1.3E-05 36.3 2.5 41 138-179 45-86 (101)
66 3tgn_A ADC operon repressor AD 86.0 0.96 3.3E-05 32.8 4.5 50 129-178 30-79 (146)
67 1zx4_A P1 PARB, plasmid partit 85.4 0.49 1.7E-05 39.3 2.9 43 133-175 6-49 (192)
68 1z7u_A Hypothetical protein EF 85.3 0.4 1.4E-05 34.9 2.1 41 138-178 22-64 (112)
69 1qgp_A Protein (double strande 85.0 0.24 8.1E-06 34.9 0.7 42 137-178 13-59 (77)
70 2pn6_A ST1022, 150AA long hypo 84.6 0.59 2E-05 35.1 2.8 43 137-179 2-46 (150)
71 2r0q_C Putative transposon TN5 83.8 0.48 1.7E-05 38.0 2.2 35 140-174 165-199 (209)
72 3t72_q RNA polymerase sigma fa 83.5 0.65 2.2E-05 34.3 2.6 41 135-176 20-65 (99)
73 1neq_A DNA-binding protein NER 83.4 0.32 1.1E-05 33.9 0.8 34 140-173 11-45 (74)
74 1b4a_A Arginine repressor; hel 83.4 0.61 2.1E-05 37.1 2.5 42 38-84 6-47 (149)
75 2lfw_A PHYR sigma-like domain; 83.3 0.31 1.1E-05 37.0 0.8 42 135-177 94-136 (157)
76 1oyi_A Double-stranded RNA-bin 83.1 0.48 1.7E-05 34.6 1.7 49 129-178 9-58 (82)
77 3clo_A Transcriptional regulat 82.8 0.86 3E-05 37.5 3.3 43 133-176 196-238 (258)
78 1l0o_C Sigma factor; bergerat 82.8 0.25 8.4E-06 38.4 0.0 41 135-176 199-240 (243)
79 1qbj_A Protein (double-strande 82.7 0.54 1.8E-05 33.7 1.8 45 135-179 7-56 (81)
80 1q1h_A TFE, transcription fact 82.6 0.42 1.4E-05 34.2 1.2 42 138-179 18-62 (110)
81 2pg4_A Uncharacterized protein 81.9 0.52 1.8E-05 32.9 1.5 34 145-178 23-59 (95)
82 2l0k_A Stage III sporulation p 81.7 0.62 2.1E-05 34.3 1.9 37 137-173 6-43 (93)
83 2hzt_A Putative HTH-type trans 81.0 0.56 1.9E-05 33.8 1.4 42 137-178 13-56 (107)
84 1sfx_A Conserved hypothetical 80.8 0.97 3.3E-05 30.9 2.5 41 138-178 20-62 (109)
85 2qlz_A Transcription factor PF 80.6 1.1 3.7E-05 37.7 3.2 42 135-176 9-51 (232)
86 3szt_A QCSR, quorum-sensing co 80.1 0.93 3.2E-05 37.0 2.6 44 133-177 174-217 (237)
87 2f2e_A PA1607; transcription f 79.8 0.64 2.2E-05 35.7 1.4 41 138-178 24-65 (146)
88 2cyy_A Putative HTH-type trans 79.5 1.1 3.7E-05 33.9 2.6 43 137-179 6-50 (151)
89 2cfx_A HTH-type transcriptiona 79.5 1.2 4E-05 33.5 2.8 42 137-178 4-47 (144)
90 3bhq_A Transcriptional regulat 79.5 0.6 2.1E-05 35.5 1.2 42 127-168 1-50 (211)
91 2p4w_A Transcriptional regulat 79.0 0.58 2E-05 38.3 1.0 44 135-178 12-56 (202)
92 3u5c_N S27A, YS15, 40S ribosom 78.9 0.6 2E-05 38.0 1.0 32 135-166 29-60 (151)
93 1on2_A Transcriptional regulat 78.9 1.2 4.2E-05 32.7 2.7 36 142-177 12-49 (142)
94 2cg4_A Regulatory protein ASNC 78.9 1.2 4.1E-05 33.6 2.7 42 137-178 7-50 (152)
95 2gxg_A 146AA long hypothetical 78.5 1.4 4.9E-05 31.7 2.9 34 145-178 45-78 (146)
96 1i1g_A Transcriptional regulat 78.4 1.1 3.7E-05 33.1 2.3 42 137-178 3-46 (141)
97 1ku9_A Hypothetical protein MJ 78.1 0.64 2.2E-05 33.4 0.9 32 147-178 38-69 (152)
98 3ech_A MEXR, multidrug resista 78.0 2.6 9E-05 30.5 4.3 46 133-178 33-79 (142)
99 1uxc_A FRUR (1-57), fructose r 77.4 0.63 2.1E-05 31.8 0.6 21 153-173 3-23 (65)
100 2pjp_A Selenocysteine-specific 77.3 0.3 1E-05 36.5 -1.1 48 14-61 43-90 (121)
101 1sfu_A 34L protein; protein/Z- 77.0 0.44 1.5E-05 34.6 -0.3 50 129-178 7-57 (75)
102 3kz3_A Repressor protein CI; f 77.0 1.6 5.6E-05 29.2 2.7 26 148-173 23-48 (80)
103 3bro_A Transcriptional regulat 77.0 2.1 7E-05 30.7 3.4 44 135-178 32-78 (141)
104 2w25_A Probable transcriptiona 76.9 1.5 5.2E-05 32.9 2.8 42 137-178 6-49 (150)
105 3j20_Q 30S ribosomal protein S 76.7 0.8 2.7E-05 37.5 1.1 31 136-166 30-60 (158)
106 2qq9_A Diphtheria toxin repres 76.6 1.3 4.5E-05 36.1 2.4 37 142-178 14-52 (226)
107 3jw4_A Transcriptional regulat 76.3 2.1 7.1E-05 31.3 3.3 44 135-178 39-85 (148)
108 2p5v_A Transcriptional regulat 76.3 1.6 5.5E-05 33.3 2.8 42 137-178 9-52 (162)
109 2x4h_A Hypothetical protein SS 76.2 1.4 4.8E-05 32.2 2.3 37 142-178 21-59 (139)
110 3kor_A Possible Trp repressor; 76.1 1.3 4.4E-05 34.6 2.1 35 136-170 61-95 (119)
111 3kp7_A Transcriptional regulat 76.0 2.5 8.6E-05 30.9 3.7 33 146-178 47-79 (151)
112 2xzm_O RPS13E; ribosome, trans 75.8 0.97 3.3E-05 36.8 1.4 32 135-166 31-62 (153)
113 2fsw_A PG_0823 protein; alpha- 75.6 1.1 3.8E-05 32.1 1.6 41 138-178 25-67 (107)
114 2l8n_A Transcriptional repress 75.4 0.5 1.7E-05 32.5 -0.3 22 151-172 10-31 (67)
115 2dbb_A Putative HTH-type trans 75.1 1.8 6.1E-05 32.5 2.7 42 137-178 8-51 (151)
116 1uxc_A FRUR (1-57), fructose r 74.8 1.3 4.5E-05 30.2 1.7 34 129-162 20-58 (65)
117 2p5k_A Arginine repressor; DNA 74.4 2.8 9.5E-05 26.8 3.2 40 39-83 7-46 (64)
118 3eco_A MEPR; mutlidrug efflux 74.3 1.9 6.7E-05 30.9 2.6 44 135-178 29-75 (139)
119 1fx7_A Iron-dependent represso 74.2 1.6 5.5E-05 35.5 2.4 36 143-178 15-52 (230)
120 1rzs_A Antirepressor, regulato 73.9 0.42 1.4E-05 31.7 -1.0 30 142-171 2-31 (61)
121 3nrv_A Putative transcriptiona 73.3 2.8 9.7E-05 30.4 3.3 44 134-177 37-81 (148)
122 2l1p_A DNA-binding protein SAT 73.2 1.7 5.9E-05 32.1 2.1 35 137-172 20-54 (83)
123 3nqo_A MARR-family transcripti 72.9 2.8 9.7E-05 32.5 3.4 44 135-178 39-85 (189)
124 2ia0_A Putative HTH-type trans 72.8 2.2 7.4E-05 33.5 2.8 43 136-178 15-59 (171)
125 2k02_A Ferrous iron transport 72.5 1.5 5E-05 32.1 1.6 44 141-184 5-50 (87)
126 3bpv_A Transcriptional regulat 72.2 3.2 0.00011 29.5 3.4 44 135-178 27-71 (138)
127 3qp6_A CVIR transcriptional re 71.9 2.1 7.1E-05 35.8 2.6 43 134-177 197-239 (265)
128 2qww_A Transcriptional regulat 71.9 2.3 8E-05 31.1 2.6 44 135-178 39-83 (154)
129 2h09_A Transcriptional regulat 71.7 1.8 6.2E-05 32.3 2.0 30 149-178 53-82 (155)
130 3frw_A Putative Trp repressor 71.5 2.2 7.5E-05 32.7 2.4 36 137-172 45-80 (107)
131 2fu4_A Ferric uptake regulatio 71.4 2.7 9.1E-05 28.5 2.7 43 137-179 16-67 (83)
132 1lj9_A Transcriptional regulat 71.3 2 6.9E-05 31.0 2.1 35 143-177 35-70 (144)
133 1jgs_A Multiple antibiotic res 71.0 3.5 0.00012 29.4 3.4 44 135-178 32-76 (138)
134 3bja_A Transcriptional regulat 70.9 2.8 9.7E-05 29.8 2.8 44 135-178 31-75 (139)
135 2nnn_A Probable transcriptiona 70.8 3.2 0.00011 29.5 3.1 45 134-178 35-80 (140)
136 2xi8_A Putative transcription 70.7 1.4 4.9E-05 27.6 1.1 27 147-173 11-37 (66)
137 3k0l_A Repressor protein; heli 70.7 4.8 0.00016 29.9 4.2 44 135-178 44-88 (162)
138 2fbk_A Transcriptional regulat 70.6 2 6.9E-05 32.8 2.1 44 135-178 67-114 (181)
139 2qvo_A Uncharacterized protein 70.1 2.4 8E-05 29.6 2.2 28 151-178 31-58 (95)
140 2fbh_A Transcriptional regulat 69.8 3.2 0.00011 29.7 2.9 31 148-178 50-80 (146)
141 2rdp_A Putative transcriptiona 69.8 4.1 0.00014 29.5 3.5 45 134-178 39-84 (150)
142 2fbi_A Probable transcriptiona 69.0 3 0.0001 29.8 2.6 44 135-178 34-78 (142)
143 2e1c_A Putative HTH-type trans 68.8 3 0.0001 32.7 2.8 42 137-178 26-69 (171)
144 3hrs_A Metalloregulator SCAR; 68.8 1.9 6.4E-05 35.0 1.6 37 142-178 10-48 (214)
145 3bdd_A Regulatory protein MARR 68.7 4.3 0.00015 28.9 3.4 38 141-178 34-73 (142)
146 3g3z_A NMB1585, transcriptiona 68.6 3.8 0.00013 29.7 3.1 44 135-178 29-73 (145)
147 3i4p_A Transcriptional regulat 68.5 3.2 0.00011 31.9 2.8 42 137-178 2-45 (162)
148 3b73_A PHIH1 repressor-like pr 68.1 2.9 9.8E-05 31.5 2.4 42 137-178 12-57 (111)
149 3oop_A LIN2960 protein; protei 68.1 3.2 0.00011 30.0 2.6 44 135-178 35-79 (143)
150 3f3x_A Transcriptional regulat 68.1 3.2 0.00011 30.0 2.6 43 135-177 35-77 (144)
151 3fm5_A Transcriptional regulat 68.0 5.6 0.00019 29.0 4.0 43 135-177 37-81 (150)
152 1uly_A Hypothetical protein PH 67.7 3.1 0.0001 33.5 2.7 43 136-178 18-61 (192)
153 3trb_A Virulence-associated pr 67.5 2.2 7.7E-05 31.1 1.7 34 140-173 15-50 (104)
154 1zug_A Phage 434 CRO protein; 67.4 1.9 6.3E-05 27.5 1.1 27 147-173 13-39 (71)
155 1v4r_A Transcriptional repress 67.4 0.74 2.5E-05 32.8 -1.0 53 137-189 18-74 (102)
156 2fa5_A Transcriptional regulat 67.3 4.5 0.00015 29.7 3.3 43 135-177 47-90 (162)
157 3u2r_A Regulatory protein MARR 67.0 3.1 0.00011 31.1 2.5 44 135-178 44-90 (168)
158 1r69_A Repressor protein CI; g 66.8 1.9 6.6E-05 27.3 1.1 27 147-173 11-37 (69)
159 2l8n_A Transcriptional repress 66.5 5.1 0.00017 27.3 3.2 33 129-161 29-63 (67)
160 2pij_A Prophage PFL 6 CRO; tra 66.5 2.1 7E-05 27.6 1.2 26 146-172 10-35 (67)
161 1xn7_A Hypothetical protein YH 66.5 3.4 0.00012 29.3 2.4 43 141-183 5-49 (78)
162 2hr3_A Probable transcriptiona 66.2 4 0.00014 29.4 2.8 31 148-178 48-78 (147)
163 3bj6_A Transcriptional regulat 66.2 3.6 0.00012 29.8 2.6 44 135-178 38-82 (152)
164 2r1j_L Repressor protein C2; p 64.8 2 6.7E-05 27.1 0.8 27 147-173 15-41 (68)
165 3cjn_A Transcriptional regulat 64.7 4 0.00014 30.1 2.6 44 135-178 50-94 (162)
166 2w48_A Sorbitol operon regulat 64.2 4.6 0.00016 34.3 3.2 41 140-180 10-51 (315)
167 2bv6_A MGRA, HTH-type transcri 63.8 5 0.00017 28.8 3.0 43 135-177 35-78 (142)
168 1y7y_A C.AHDI; helix-turn-heli 63.8 2.4 8.2E-05 27.2 1.1 33 141-173 16-49 (74)
169 2a6c_A Helix-turn-helix motif; 63.6 2.2 7.5E-05 29.0 0.9 36 138-173 18-54 (83)
170 2a61_A Transcriptional regulat 63.6 6.2 0.00021 28.2 3.4 44 135-178 31-75 (145)
171 3b7h_A Prophage LP1 protein 11 63.6 2.2 7.6E-05 27.8 0.9 35 139-173 8-43 (78)
172 3omt_A Uncharacterized protein 63.6 2.1 7.3E-05 27.9 0.8 26 147-172 18-43 (73)
173 2cw1_A SN4M; lambda CRO fold, 63.4 2.6 8.8E-05 29.0 1.2 29 143-172 7-35 (65)
174 3bs3_A Putative DNA-binding pr 63.0 2.5 8.6E-05 27.3 1.1 27 147-173 20-46 (76)
175 1yyv_A Putative transcriptiona 62.8 2.1 7.1E-05 32.4 0.7 41 137-177 34-76 (131)
176 2ict_A Antitoxin HIGA; helix-t 62.6 2.5 8.5E-05 29.1 1.0 28 146-173 17-44 (94)
177 2eth_A Transcriptional regulat 62.3 5.9 0.0002 29.1 3.2 45 134-178 41-86 (154)
178 3df8_A Possible HXLR family tr 62.2 5.5 0.00019 28.9 2.9 41 138-178 27-71 (111)
179 1x57_A Endothelial differentia 61.7 8 0.00027 26.2 3.6 39 134-172 9-48 (91)
180 2wte_A CSA3; antiviral protein 61.3 4.8 0.00017 33.7 2.8 41 138-178 152-194 (244)
181 2pex_A Transcriptional regulat 61.1 5.1 0.00017 29.2 2.6 44 135-178 45-89 (153)
182 2dk5_A DNA-directed RNA polyme 61.0 6 0.0002 28.6 2.9 44 134-177 19-63 (91)
183 4g6q_A Putative uncharacterize 60.9 3.4 0.00012 32.8 1.7 44 134-177 19-64 (182)
184 2frh_A SARA, staphylococcal ac 60.6 3.7 0.00013 29.9 1.7 44 135-178 35-81 (127)
185 3cdh_A Transcriptional regulat 60.1 5.5 0.00019 29.1 2.6 38 141-178 46-85 (155)
186 3iyd_F RNA polymerase sigma fa 59.3 9.7 0.00033 35.7 4.7 42 135-177 551-597 (613)
187 1s3j_A YUSO protein; structura 59.3 4.7 0.00016 29.3 2.1 30 149-178 50-79 (155)
188 1adr_A P22 C2 repressor; trans 59.3 2.8 9.7E-05 27.0 0.8 27 147-173 15-41 (76)
189 3rkx_A Biotin-[acetyl-COA-carb 59.2 4.7 0.00016 35.1 2.4 41 138-178 3-47 (323)
190 3deu_A Transcriptional regulat 58.7 5.7 0.0002 30.0 2.6 43 135-177 51-95 (166)
191 3e6m_A MARR family transcripti 58.6 4.8 0.00017 29.9 2.1 44 135-178 51-95 (161)
192 2k9q_A Uncharacterized protein 58.4 3 0.0001 27.6 0.8 26 147-172 12-37 (77)
193 4aik_A Transcriptional regulat 58.4 5.3 0.00018 30.1 2.3 36 143-178 37-74 (151)
194 4hbl_A Transcriptional regulat 58.3 5.2 0.00018 29.3 2.2 44 135-178 39-83 (149)
195 3r0a_A Putative transcriptiona 58.3 7.4 0.00025 28.7 3.1 40 139-178 27-70 (123)
196 3boq_A Transcriptional regulat 58.3 4.7 0.00016 29.6 2.0 30 148-177 60-89 (160)
197 1g2h_A Transcriptional regulat 58.1 7.2 0.00025 25.7 2.7 42 134-175 17-58 (61)
198 2b5a_A C.BCLI; helix-turn-heli 57.5 3.6 0.00012 26.7 1.1 33 140-172 12-45 (77)
199 1z91_A Organic hydroperoxide r 57.5 5.3 0.00018 28.8 2.1 44 135-178 38-82 (147)
200 2wiu_B HTH-type transcriptiona 57.1 4 0.00014 27.2 1.3 35 139-173 13-48 (88)
201 3cec_A Putative antidote prote 56.1 3.4 0.00011 29.0 0.8 27 147-173 28-54 (104)
202 2nyx_A Probable transcriptiona 56.1 8 0.00027 29.0 3.0 44 135-178 43-87 (168)
203 4b8x_A SCO5413, possible MARR- 55.5 2.8 9.6E-05 31.3 0.3 29 150-178 51-79 (147)
204 3hsr_A HTH-type transcriptiona 55.5 2.3 8E-05 30.9 -0.1 31 148-178 48-78 (140)
205 2zko_A NS1, NS1A, non-structur 54.7 4.1 0.00014 29.2 1.0 18 51-68 15-32 (73)
206 3f6w_A XRE-family like protein 54.2 7.5 0.00026 25.7 2.3 33 140-172 16-49 (83)
207 3s2w_A Transcriptional regulat 54.0 3.1 0.00011 30.8 0.3 30 148-177 62-91 (159)
208 1lmb_3 Protein (lambda repress 53.9 7.5 0.00026 26.2 2.3 27 147-173 27-53 (92)
209 3ic7_A Putative transcriptiona 53.8 16 0.00054 27.1 4.3 59 131-189 8-74 (126)
210 1umq_A Photosynthetic apparatu 53.8 6.1 0.00021 28.3 1.9 41 134-174 37-78 (81)
211 1r7j_A Conserved hypothetical 53.8 9.6 0.00033 27.4 3.0 42 137-178 7-48 (95)
212 2fq4_A Transcriptional regulat 53.3 7.1 0.00024 29.0 2.3 38 131-168 5-50 (192)
213 3s8q_A R-M controller protein; 52.2 8.8 0.0003 25.3 2.4 32 141-172 14-46 (82)
214 2kpj_A SOS-response transcript 51.8 8.5 0.00029 26.4 2.3 33 140-172 11-44 (94)
215 3bd1_A CRO protein; transcript 50.0 5.2 0.00018 26.6 0.9 26 148-174 10-35 (79)
216 2b0l_A GTP-sensing transcripti 49.9 4 0.00014 29.8 0.4 43 137-179 25-72 (102)
217 2dg7_A Putative transcriptiona 49.7 6.4 0.00022 29.1 1.5 36 132-168 2-45 (195)
218 1tbx_A ORF F-93, hypothetical 49.7 11 0.00036 26.0 2.6 34 144-177 15-53 (99)
219 1a04_A Nitrate/nitrite respons 49.1 10 0.00035 28.8 2.6 41 134-175 154-194 (215)
220 4a5n_A Uncharacterized HTH-typ 48.6 6.9 0.00024 30.0 1.5 38 141-178 29-68 (131)
221 3cwr_A Transcriptional regulat 48.2 8.9 0.0003 28.0 2.1 39 131-169 8-56 (208)
222 1okr_A MECI, methicillin resis 48.2 9.3 0.00032 27.0 2.1 31 148-178 22-56 (123)
223 3t76_A VANU, transcriptional r 48.1 6 0.00021 28.1 1.1 27 147-173 34-60 (88)
224 2ef8_A C.ECOT38IS, putative tr 48.1 6.2 0.00021 25.9 1.1 33 141-173 13-46 (84)
225 3tqn_A Transcriptional regulat 48.1 13 0.00045 26.9 3.0 59 131-189 6-72 (113)
226 3c3w_A Two component transcrip 47.9 11 0.00037 29.3 2.6 42 134-176 149-190 (225)
227 3qq6_A HTH-type transcriptiona 47.2 11 0.00037 25.2 2.2 33 141-173 13-46 (78)
228 1b0n_A Protein (SINR protein); 46.8 6.5 0.00022 27.3 1.1 27 147-173 11-37 (111)
229 2a6h_F RNA polymerase sigma fa 46.7 13 0.00045 33.4 3.3 41 135-176 361-406 (423)
230 1mkm_A ICLR transcriptional re 46.6 9 0.00031 31.2 2.1 40 139-178 9-51 (249)
231 1l9z_H Sigma factor SIGA; heli 46.5 13 0.00045 34.0 3.3 41 135-176 376-421 (438)
232 2p8t_A Hypothetical protein PH 46.2 13 0.00044 31.0 2.9 43 136-178 16-58 (200)
233 2gqq_A Leucine-responsive regu 46.0 7.2 0.00025 29.8 1.3 43 136-178 11-55 (163)
234 1yio_A Response regulatory pro 45.5 12 0.00041 28.1 2.4 40 135-175 143-182 (208)
235 2eby_A Putative HTH-type trans 44.8 6.6 0.00023 27.8 0.9 34 140-173 12-47 (113)
236 1ntc_A Protein (nitrogen regul 44.5 11 0.00039 26.5 2.1 38 138-175 51-89 (91)
237 2jvl_A TRMBF1; coactivator, he 44.4 13 0.00044 26.6 2.4 39 134-172 30-71 (107)
238 2vxz_A Pyrsv_GP04; viral prote 43.8 14 0.00048 30.3 2.7 35 138-172 11-46 (165)
239 2fjr_A Repressor protein CI; g 43.7 12 0.0004 28.7 2.2 35 138-173 9-43 (189)
240 4fx0_A Probable transcriptiona 43.7 7.6 0.00026 29.1 1.1 29 150-178 52-80 (148)
241 1bia_A BIRA bifunctional prote 43.6 15 0.0005 31.5 3.0 40 138-177 5-46 (321)
242 1eto_A FIS, factor for inversi 43.5 11 0.00036 27.7 1.8 39 137-175 57-96 (98)
243 4ev0_A Transcription regulator 43.5 17 0.00058 27.3 3.1 50 142-193 149-204 (216)
244 3rd3_A Probable transcriptiona 43.3 8.8 0.0003 27.9 1.3 33 136-168 8-48 (197)
245 4dyq_A Gene 1 protein; GP1, oc 43.1 15 0.00053 27.8 2.8 40 135-174 13-53 (140)
246 1p6r_A Penicillinase repressor 43.0 12 0.0004 25.2 1.9 40 139-178 10-55 (82)
247 3dv8_A Transcriptional regulat 42.9 13 0.00044 28.1 2.3 42 150-193 169-210 (220)
248 3klo_A Transcriptional regulat 42.6 13 0.00044 28.6 2.3 41 135-176 160-200 (225)
249 3e7l_A Transcriptional regulat 42.5 9.8 0.00033 25.0 1.4 38 138-175 19-57 (63)
250 1xmk_A Double-stranded RNA-spe 42.5 15 0.00051 26.2 2.4 41 138-178 11-54 (79)
251 1z6r_A MLC protein; transcript 42.1 15 0.00051 31.7 2.8 49 136-187 14-64 (406)
252 3n0r_A Response regulator; sig 41.5 14 0.00046 30.8 2.4 43 134-177 111-154 (286)
253 3vib_A MTRR; helix-turn-helix 41.4 13 0.00045 27.7 2.1 34 136-169 8-49 (210)
254 3op9_A PLI0006 protein; struct 41.0 13 0.00044 26.2 1.9 35 138-172 9-44 (114)
255 1pb6_A Hypothetical transcript 40.8 12 0.0004 27.6 1.7 34 136-169 16-57 (212)
256 3fx3_A Cyclic nucleotide-bindi 40.7 9 0.00031 29.5 1.1 40 153-195 181-220 (237)
257 1j5y_A Transcriptional regulat 39.9 19 0.00065 28.2 2.9 45 138-183 21-68 (187)
258 2ovg_A Phage lambda CRO; trans 39.8 8.6 0.00029 26.2 0.8 29 143-172 7-35 (66)
259 1p4x_A Staphylococcal accessor 39.6 14 0.00049 30.8 2.2 44 135-178 156-202 (250)
260 2ewt_A BLDD, putative DNA-bind 39.5 11 0.00039 23.8 1.3 33 141-173 11-46 (71)
261 1z05_A Transcriptional regulat 38.8 15 0.00051 32.2 2.3 49 136-187 37-87 (429)
262 1ixc_A CBNR, LYSR-type regulat 38.7 15 0.00051 28.6 2.1 44 142-186 8-51 (294)
263 2hsg_A Glucose-resistance amyl 38.6 19 0.00064 29.3 2.8 32 130-161 23-56 (332)
264 3ccy_A Putative TETR-family tr 38.6 15 0.00052 27.3 2.0 32 136-167 12-51 (203)
265 2ek5_A Predicted transcription 38.6 17 0.00058 27.3 2.3 36 154-189 32-67 (129)
266 3bdn_A Lambda repressor; repre 38.6 14 0.00049 29.1 2.0 33 141-173 20-53 (236)
267 3vp5_A Transcriptional regulat 38.3 18 0.0006 27.0 2.4 35 134-168 8-50 (189)
268 2xrn_A HTH-type transcriptiona 38.0 12 0.00041 30.5 1.5 38 141-178 9-49 (241)
269 1y9q_A Transcriptional regulat 37.7 19 0.00063 27.6 2.5 34 139-172 12-46 (192)
270 2fd5_A Transcriptional regulat 37.5 17 0.00057 26.4 2.1 31 137-167 6-44 (180)
271 2fxa_A Protease production reg 37.0 19 0.00065 28.5 2.5 44 135-178 46-90 (207)
272 3eus_A DNA-binding protein; st 36.7 23 0.00078 24.0 2.6 34 139-172 15-49 (86)
273 3hhg_A Transcriptional regulat 36.5 19 0.00064 28.2 2.4 45 142-187 10-54 (306)
274 3cdl_A Transcriptional regulat 36.4 18 0.00063 26.9 2.3 34 134-167 5-46 (203)
275 3u1d_A Uncharacterized protein 36.1 17 0.00057 29.0 2.0 46 135-180 26-76 (151)
276 3by6_A Predicted transcription 36.0 23 0.00078 26.3 2.7 57 133-189 10-74 (126)
277 2l49_A C protein; P2 bacteriop 35.9 10 0.00035 25.8 0.7 26 147-172 14-39 (99)
278 3bru_A Regulatory protein, TET 35.6 16 0.00056 27.1 1.8 34 136-169 28-69 (222)
279 2iu5_A DHAS, YCEG, HTH-type dh 35.5 20 0.00067 26.5 2.2 33 136-168 11-51 (195)
280 2bnm_A Epoxidase; oxidoreducta 34.6 23 0.00079 27.1 2.6 36 138-173 10-46 (198)
281 1jhf_A LEXA repressor; LEXA SO 34.2 26 0.00089 27.2 2.9 37 141-177 13-53 (202)
282 2ao9_A Phage protein; structur 34.1 17 0.0006 29.0 1.8 39 134-172 23-70 (155)
283 1vz0_A PARB, chromosome partit 34.0 20 0.00067 29.6 2.2 42 133-174 116-158 (230)
284 2eh3_A Transcriptional regulat 33.7 15 0.00052 26.7 1.3 31 138-168 2-40 (179)
285 2vn2_A DNAD, chromosome replic 33.6 24 0.00082 26.2 2.4 28 151-178 52-79 (128)
286 3neu_A LIN1836 protein; struct 33.5 28 0.00095 25.7 2.8 58 132-189 11-76 (125)
287 3mky_B Protein SOPB; partition 33.4 29 0.001 28.8 3.1 41 132-172 21-64 (189)
288 2zb9_A Putative transcriptiona 33.2 13 0.00045 27.7 0.9 38 132-169 17-62 (214)
289 1qpz_A PURA, protein (purine n 33.1 20 0.00067 29.4 2.1 28 134-161 26-54 (340)
290 2o38_A Hypothetical protein; a 33.1 14 0.00048 27.4 1.1 25 148-172 51-75 (120)
291 2b6n_A Proteinase K; S binding 33.0 42 0.0014 27.7 4.1 35 31-65 223-257 (278)
292 2ofy_A Putative XRE-family tra 33.0 25 0.00085 23.3 2.2 33 140-173 18-50 (86)
293 1zk8_A Transcriptional regulat 32.5 16 0.00055 26.4 1.3 31 137-167 7-45 (183)
294 3ivp_A Putative transposon-rel 32.4 30 0.001 24.7 2.8 36 137-172 11-47 (126)
295 3geu_A Intercellular adhesion 32.1 16 0.00053 26.7 1.2 31 137-167 2-40 (189)
296 3iuo_A ATP-dependent DNA helic 32.0 36 0.0012 25.4 3.2 41 138-178 20-60 (122)
297 3vk0_A NHTF, transcriptional r 31.7 26 0.00087 24.9 2.3 35 138-172 21-56 (114)
298 3nnr_A Transcriptional regulat 31.5 12 0.00042 28.3 0.5 34 135-168 2-43 (228)
299 4dzt_A Aqualysin-1, aqualysin- 31.4 47 0.0016 27.2 4.1 36 31-66 221-256 (276)
300 2oz6_A Virulence factor regula 31.3 17 0.00057 27.2 1.2 29 151-179 165-193 (207)
301 3dcf_A Transcriptional regulat 31.0 21 0.0007 26.3 1.7 33 136-168 29-69 (218)
302 3loc_A HTH-type transcriptiona 31.0 16 0.00053 26.8 1.0 32 137-168 17-56 (212)
303 3iwz_A CAP-like, catabolite ac 30.8 17 0.00058 27.6 1.2 28 151-178 188-215 (230)
304 3g5g_A Regulatory protein; tra 30.8 31 0.0011 24.3 2.6 32 141-172 31-63 (99)
305 2y75_A HTH-type transcriptiona 30.8 25 0.00086 25.5 2.1 35 144-178 16-54 (129)
306 3eu6_A NS1, nonstructural prot 30.6 14 0.00049 30.9 0.8 18 51-68 12-29 (215)
307 2wui_A MEXZ, transcriptional r 30.6 24 0.0008 26.5 2.0 33 136-168 9-49 (210)
308 2o0m_A Transcriptional regulat 30.6 11 0.00036 32.6 0.0 40 139-178 21-62 (345)
309 3fzv_A Probable transcriptiona 30.5 50 0.0017 25.7 3.9 45 140-185 9-53 (306)
310 2fe3_A Peroxide operon regulat 29.8 37 0.0013 25.6 3.0 44 137-180 21-72 (145)
311 2p5t_A Putative transcriptiona 29.6 11 0.00038 28.5 0.0 26 147-172 11-36 (158)
312 1sd4_A Penicillinase repressor 29.4 28 0.00096 24.6 2.1 30 148-177 22-55 (126)
313 1i3j_A I-TEVI, intron-associat 29.2 44 0.0015 25.5 3.3 69 102-173 15-106 (116)
314 3dkw_A DNR protein; CRP-FNR, H 28.9 21 0.00071 27.1 1.4 43 151-195 179-221 (227)
315 3fmy_A HTH-type transcriptiona 28.8 18 0.00063 23.8 1.0 25 148-172 22-46 (73)
316 3la7_A Global nitrogen regulat 28.7 30 0.001 27.1 2.3 42 151-194 194-235 (243)
317 2zcw_A TTHA1359, transcription 28.1 20 0.00069 26.9 1.2 41 151-193 147-187 (202)
318 3crj_A Transcription regulator 27.8 22 0.00076 26.6 1.4 32 136-167 12-51 (199)
319 3nrg_A TETR family transcripti 27.8 29 0.00099 25.5 2.0 34 135-168 10-51 (217)
320 2ijl_A AGR_C_4647P, molybdenum 27.8 40 0.0014 25.9 2.9 48 138-186 27-74 (135)
321 1sh7_A Extracellular subtilisi 27.7 42 0.0014 28.0 3.2 36 31-66 219-254 (284)
322 4hku_A LMO2814 protein, TETR t 27.7 25 0.00085 25.9 1.6 30 138-167 7-44 (178)
323 2ras_A Transcriptional regulat 27.6 29 0.00099 25.7 2.0 32 137-168 10-49 (212)
324 3egq_A TETR family transcripti 27.6 20 0.00068 25.7 1.1 32 138-169 4-43 (170)
325 1r71_A Transcriptional repress 27.5 29 0.001 27.9 2.1 40 134-173 35-75 (178)
326 3ryp_A Catabolite gene activat 27.4 21 0.00073 26.7 1.2 29 151-179 168-196 (210)
327 2fmy_A COOA, carbon monoxide o 27.2 22 0.00076 27.0 1.3 29 151-179 168-196 (220)
328 3p7n_A Sensor histidine kinase 27.1 37 0.0013 26.2 2.6 37 141-177 204-240 (258)
329 3f8m_A GNTR-family protein tra 27.1 33 0.0011 28.2 2.4 49 139-189 23-74 (248)
330 3kcc_A Catabolite gene activat 27.0 28 0.00094 27.7 1.9 29 152-180 219-247 (260)
331 4ham_A LMO2241 protein; struct 27.0 48 0.0017 24.4 3.2 57 134-190 14-78 (134)
332 2hyt_A TETR-family transcripti 27.0 35 0.0012 25.2 2.4 32 137-168 11-50 (197)
333 2qko_A Possible transcriptiona 26.8 27 0.00093 26.1 1.7 41 129-169 18-67 (215)
334 3d0s_A Transcriptional regulat 26.7 23 0.00079 27.0 1.3 42 151-194 178-219 (227)
335 3g1o_A Transcriptional regulat 26.7 22 0.00075 27.6 1.2 38 132-169 37-82 (255)
336 1mzb_A Ferric uptake regulatio 26.6 43 0.0015 24.8 2.8 45 137-181 17-70 (136)
337 2g7u_A Transcriptional regulat 26.5 21 0.00072 29.2 1.1 39 139-177 15-56 (257)
338 2esn_A Probable transcriptiona 26.4 46 0.0016 26.1 3.1 51 135-186 10-60 (310)
339 2xdn_A HTH-type transcriptiona 26.3 37 0.0013 25.2 2.4 32 137-168 10-49 (210)
340 3cta_A Riboflavin kinase; stru 26.2 16 0.00056 29.2 0.4 26 151-176 28-53 (230)
341 3bqz_B HTH-type transcriptiona 26.2 19 0.00066 26.0 0.8 31 138-168 2-40 (194)
342 1r0r_E Subtilisin carlsberg; h 26.0 46 0.0016 27.4 3.2 36 31-66 219-254 (274)
343 3kz9_A SMCR; transcriptional r 26.0 33 0.0011 24.8 2.0 36 134-169 13-56 (206)
344 2nx4_A Transcriptional regulat 26.0 29 0.00098 25.7 1.7 32 137-168 9-48 (194)
345 3col_A Putative transcription 25.8 22 0.00076 25.5 1.0 33 136-168 8-48 (196)
346 3anp_C Transcriptional repress 25.8 32 0.0011 25.4 2.0 32 137-168 8-47 (204)
347 2o0y_A Transcriptional regulat 25.8 16 0.00056 30.0 0.3 39 140-178 25-66 (260)
348 1nr3_A MTH0916, DNA-binding pr 25.6 9.1 0.00031 28.1 -1.2 27 147-173 2-28 (122)
349 2hoe_A N-acetylglucosamine kin 25.6 30 0.001 29.7 2.0 38 148-188 31-68 (380)
350 3b02_A Transcriptional regulat 25.5 24 0.00082 26.4 1.2 29 151-179 140-168 (195)
351 3fxq_A LYSR type regulator of 25.5 28 0.00095 27.5 1.6 43 143-186 10-52 (305)
352 3knw_A Putative transcriptiona 25.5 36 0.0012 24.9 2.1 35 134-168 10-52 (212)
353 2qtw_B Proprotein convertase s 25.4 76 0.0026 30.0 4.8 57 31-87 233-295 (546)
354 2gau_A Transcriptional regulat 25.4 25 0.00085 26.9 1.3 29 151-179 181-209 (232)
355 2hyj_A Putative TETR-family tr 25.4 29 0.001 25.9 1.7 31 137-167 11-49 (200)
356 4fcy_A Transposase; rnaseh, DD 25.3 28 0.00097 30.9 1.8 48 33-84 103-154 (529)
357 3szp_A Transcriptional regulat 25.3 26 0.0009 26.8 1.4 43 143-186 9-51 (291)
358 3dew_A Transcriptional regulat 25.2 23 0.00079 25.6 1.0 33 137-169 7-47 (206)
359 2hin_A GP39, repressor protein 25.2 22 0.00076 24.7 0.9 21 153-173 13-33 (71)
360 3e97_A Transcriptional regulat 25.2 24 0.00084 26.9 1.2 41 151-193 176-216 (231)
361 3q0w_A HTH-type transcriptiona 25.2 31 0.0011 26.4 1.8 38 131-168 37-82 (236)
362 3cjd_A Transcriptional regulat 25.2 28 0.00097 26.0 1.6 32 136-167 10-49 (198)
363 1al3_A Cys regulon transcripti 25.0 15 0.00052 29.6 0.0 44 143-186 9-52 (324)
364 4a1k_A Putative L, D-transpept 25.0 13 0.00045 29.2 -0.4 23 33-55 11-37 (165)
365 3b81_A Transcriptional regulat 25.0 31 0.0011 25.1 1.7 33 136-168 9-49 (203)
366 2rae_A Transcriptional regulat 25.0 23 0.00078 26.1 1.0 32 137-168 16-55 (207)
367 1rkt_A Protein YFIR; transcrip 24.9 34 0.0012 25.4 2.0 31 137-167 11-49 (205)
368 3vpr_A Transcriptional regulat 24.9 31 0.0011 25.2 1.7 31 138-168 3-41 (190)
369 1t33_A Putative transcriptiona 24.8 27 0.00091 26.0 1.3 33 136-168 10-49 (224)
370 2qtq_A Transcriptional regulat 24.7 27 0.00092 25.5 1.3 34 135-168 13-54 (213)
371 3qbm_A TETR transcriptional re 24.6 19 0.00063 26.1 0.4 33 136-168 5-45 (199)
372 1gci_A Subtilisin; hydrolase, 24.6 52 0.0018 27.1 3.2 50 31-93 214-263 (269)
373 1ylf_A RRF2 family protein; st 24.5 42 0.0014 25.3 2.4 38 141-178 18-58 (149)
374 3mvp_A TETR/ACRR transcription 24.4 33 0.0011 25.2 1.7 34 135-168 23-64 (217)
375 2id3_A Putative transcriptiona 24.2 32 0.0011 26.2 1.7 34 136-169 38-79 (225)
376 2o03_A Probable zinc uptake re 24.1 41 0.0014 24.8 2.3 41 39-84 13-54 (131)
377 2ppx_A AGR_C_3184P, uncharacte 23.9 23 0.00078 24.5 0.8 31 142-172 34-65 (99)
378 2zcm_A Biofilm operon icaabcd 23.9 24 0.00083 25.8 0.9 33 136-168 5-45 (192)
379 1p2f_A Response regulator; DRR 23.9 29 0.00099 26.3 1.4 42 134-176 145-193 (220)
380 3f52_A CLP gene regulator (CLG 23.9 23 0.00079 25.0 0.8 35 138-172 28-63 (117)
381 3lhq_A Acrab operon repressor 23.8 39 0.0014 24.6 2.1 34 136-169 12-53 (220)
382 3eup_A Transcriptional regulat 23.7 27 0.00091 25.4 1.1 32 136-167 9-48 (204)
383 3isp_A HTH-type transcriptiona 23.6 36 0.0012 26.7 1.9 48 139-187 10-57 (303)
384 3kjx_A Transcriptional regulat 23.5 49 0.0017 27.0 2.8 32 130-161 31-64 (344)
385 2qlz_A Transcription factor PF 23.2 26 0.00089 29.2 1.1 40 139-178 166-206 (232)
386 3qkx_A Uncharacterized HTH-typ 23.1 36 0.0012 24.3 1.7 33 136-168 6-46 (188)
387 2oer_A Probable transcriptiona 22.9 35 0.0012 25.7 1.7 32 137-168 23-62 (214)
388 2d6y_A Putative TETR family re 22.9 25 0.00085 26.3 0.8 32 137-168 7-46 (202)
389 1to2_E Subtilisin BPN'; serine 22.7 56 0.0019 27.1 3.0 50 31-93 220-269 (281)
390 2f07_A YVDT; helix-turn-helix, 22.6 31 0.0011 25.6 1.3 32 137-168 9-48 (197)
391 3mlf_A Transcriptional regulat 22.6 31 0.0011 24.7 1.3 26 147-172 33-58 (111)
392 2fe3_A Peroxide operon regulat 22.6 65 0.0022 24.2 3.2 46 34-84 20-65 (145)
393 1zyb_A Transcription regulator 22.5 29 0.001 26.8 1.2 43 151-195 187-229 (232)
394 3gzi_A Transcriptional regulat 22.4 45 0.0015 24.5 2.2 33 137-169 16-56 (218)
395 1sgm_A Putative HTH-type trans 22.3 34 0.0012 24.5 1.4 31 137-167 5-43 (191)
396 3qqa_A CMER; alpha-helical, he 22.3 39 0.0013 24.8 1.8 32 136-167 17-56 (216)
397 2ixt_A 36KDA protease; serine 22.3 60 0.002 26.9 3.2 34 31-64 249-282 (310)
398 2g7s_A Transcriptional regulat 22.2 36 0.0012 24.3 1.6 33 137-169 7-47 (194)
399 2jj7_A Hemolysin II regulatory 22.2 28 0.00097 25.1 1.0 32 137-168 6-45 (186)
400 3on4_A Transcriptional regulat 22.1 28 0.00097 24.9 1.0 32 137-168 9-48 (191)
401 4ich_A Transcriptional regulat 22.1 19 0.00064 29.4 0.0 37 137-173 29-66 (311)
402 2pjp_A Selenocysteine-specific 21.9 19 0.00066 26.4 0.0 53 138-190 7-60 (121)
403 2dhy_A CUE domain-containing p 21.8 97 0.0033 21.4 3.7 40 26-65 3-45 (67)
404 1ys7_A Transcriptional regulat 21.7 51 0.0017 25.0 2.4 46 130-176 153-209 (233)
405 3h5t_A Transcriptional regulat 21.6 40 0.0014 27.8 1.9 31 131-161 31-64 (366)
406 2iy9_A SUBA; toxin, shiga, pla 21.5 63 0.0022 27.3 3.2 36 31-66 271-306 (347)
407 1ft9_A Carbon monoxide oxidati 21.3 31 0.0011 26.3 1.1 29 151-179 164-192 (222)
408 3f0c_A TETR-molecule A, transc 21.2 32 0.0011 25.4 1.1 33 136-168 9-49 (216)
409 3hjr_A Extracellular serine pr 21.1 60 0.0021 29.6 3.1 34 31-64 335-368 (600)
410 3kxa_A NGO0477 protein, putati 21.0 34 0.0012 25.8 1.3 27 147-173 78-104 (141)
411 2jt1_A PEFI protein; solution 21.0 31 0.0011 24.2 1.0 41 138-178 4-52 (77)
412 1yg2_A Gene activator APHA; vi 20.8 53 0.0018 25.4 2.4 41 138-178 2-51 (179)
413 3o9x_A Uncharacterized HTH-typ 20.8 51 0.0017 23.8 2.2 25 148-172 82-106 (133)
414 2ibd_A Possible transcriptiona 20.8 47 0.0016 24.6 2.0 32 137-168 13-52 (204)
415 2h9b_A HTH-type transcriptiona 20.8 21 0.00071 28.5 0.0 42 144-186 10-51 (312)
416 3e6c_C CPRK, cyclic nucleotide 20.7 34 0.0012 26.7 1.2 30 151-180 178-207 (250)
417 2o7t_A Transcriptional regulat 20.6 42 0.0014 24.7 1.7 33 137-169 7-47 (199)
418 2gen_A Probable transcriptiona 20.6 30 0.001 25.7 0.9 31 137-167 6-44 (197)
419 2qwt_A Transcriptional regulat 20.6 41 0.0014 24.9 1.7 32 138-169 13-51 (196)
420 2g3b_A Putative TETR-family tr 20.6 34 0.0012 25.8 1.2 31 137-167 2-40 (208)
421 2y6x_A PSB27, photosystem II 1 20.5 19 0.00066 27.7 -0.2 25 121-145 72-98 (113)
422 2i10_A Putative TETR transcrip 20.5 23 0.00078 26.6 0.2 30 138-167 11-48 (202)
423 3him_A Probable transcriptiona 20.5 42 0.0014 24.3 1.6 33 135-167 13-53 (211)
424 2v57_A TETR family transcripti 20.4 46 0.0016 24.0 1.9 33 136-168 12-50 (190)
425 1ui5_A A-factor receptor homol 20.2 42 0.0014 25.4 1.6 33 136-168 7-47 (215)
426 3f5t_A NS1, nonstructural prot 20.1 30 0.001 29.0 0.8 18 51-68 12-29 (215)
427 2hku_A A putative transcriptio 20.0 33 0.0011 25.6 1.0 35 134-168 16-57 (215)
No 1
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=99.06 E-value=1e-10 Score=85.10 Aligned_cols=64 Identities=66% Similarity=1.114 Sum_probs=59.5
Q ss_pred CCCccccCCccccCCCCCChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhhcCcc
Q psy10745 118 SHGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNLHNYR 181 (197)
Q Consensus 118 ~~~~~nqlg~~~~ngrplp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~~n~~ 181 (197)
|+|.+|++||+|..+++++++.|.+|++|+..|....+||+.|+||+.+|++.+.||.+++.+.
T Consensus 1 ~~~~~~~~gg~~~m~~~~s~~~r~~i~~~~~~g~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~ 64 (128)
T 1pdn_C 1 GQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIR 64 (128)
T ss_dssp -CEEECTTSCEEETTSCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHCCSS
T ss_pred CCchHhhhcccccCCCcCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHhhCCcc
Confidence 5789999999999999999999999999999999999999999999999999999998877543
No 2
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=98.86 E-value=2.1e-09 Score=82.22 Aligned_cols=64 Identities=83% Similarity=1.292 Sum_probs=57.7
Q ss_pred cCCCccccCCccccCCCCCChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhhcCc
Q psy10745 117 RSHGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNLHNY 180 (197)
Q Consensus 117 ~~~~~~nqlg~~~~ngrplp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~~n~ 180 (197)
.|++++|++||+|..++.++.+.|.+|++|+..|....+||+.|+||+.+|++.+.||.+.+.+
T Consensus 15 ~~~~~~~~~gg~~~~~~~~s~e~r~~iv~~~~~G~s~~~iA~~lgis~~TV~rw~~~~~~~G~~ 78 (149)
T 1k78_A 15 TGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSI 78 (149)
T ss_dssp ----CBCTTSCBCCTTSCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHSCC
T ss_pred CCCCCccCCCceecCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 5789999999999999999999999999999999999999999999999999999999988754
No 3
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=98.35 E-value=2.9e-07 Score=71.31 Aligned_cols=64 Identities=77% Similarity=1.252 Sum_probs=59.3
Q ss_pred cCCCccccCCccccCCCCCChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhhcCc
Q psy10745 117 RSHGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNLHNY 180 (197)
Q Consensus 117 ~~~~~~nqlg~~~~ngrplp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~~n~ 180 (197)
.+....+++|+.|..++.++++.|.+|++|+..|....+||++|+||..+|++.+.||.+++.+
T Consensus 8 ~~~~~~~~~g~~~~~~~~~s~e~r~~ii~l~~~G~s~~~IA~~lgis~~TV~rwl~r~~~~G~~ 71 (159)
T 2k27_A 8 SGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSI 71 (159)
T ss_dssp CSCSSCCCCCCTTSSSCSSCHHHHHHHHHHHHHTCCHHHHHHHHTCCSHHHHHHHCCSSTTSCC
T ss_pred hcchhhhhcCCcCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHhcCCc
Confidence 4567899999999999999999999999999999999999999999999999999999887653
No 4
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=98.35 E-value=2.9e-07 Score=56.59 Aligned_cols=47 Identities=21% Similarity=0.296 Sum_probs=43.0
Q ss_pred CC--CCChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 132 GR--PLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 132 gr--plp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|| .|+++.+..|+.|...|+...+||++|+||...|.+++.+|.+.+
T Consensus 1 GR~~~l~~~~~~~i~~~~~~g~s~~~IA~~lgis~~Tv~~~~~~~~~~g 49 (51)
T 1tc3_C 1 PRGSALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYG 49 (51)
T ss_dssp CCSCCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCSTTTT
T ss_pred CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhhHHhcC
Confidence 55 489999999999999999999999999999999999999997654
No 5
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=98.32 E-value=2.6e-07 Score=66.90 Aligned_cols=72 Identities=51% Similarity=0.992 Sum_probs=60.7
Q ss_pred cceeeeccCcccCCCCCCCCcCCHHHHHHHHHHHHhCCCcchHHhHHHHHhcCCCCCCCCCCcccccccccc
Q psy10745 13 RRYYETGSFKAGVIGGSKPKVATAPVVDAIASYKRENPTMFAWEIRDRLLAEGICSQDNVPSVSSINRYITY 84 (197)
Q Consensus 13 ~Ry~ETGSIrPG~IGGSKpk~~tp~v~~~I~~~k~e~P~iFaWEIRdrLl~~GvC~~~~vPSvSSI~Rilr~ 84 (197)
.+|.++|...|..-+|.+|+..+++..+.|.++.+++|++++|||.+.|.++|++.....+|.++|+|+|+.
T Consensus 55 ~~~~~~g~~~~~~~~g~~~~~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 55 NRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp HHHHHHCCSSCCCCSCCCCCSSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred HHHHhhCCcccccCCCCCCCcCCHHHHHHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 488899999888877767778888899999999999999999999999998888654555799999999973
No 6
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=98.22 E-value=1e-06 Score=67.22 Aligned_cols=72 Identities=76% Similarity=1.181 Sum_probs=63.2
Q ss_pred cceeeeccCcccCCCCCCCCcCCHHHHHHHHHHHHhCCCcchHHhHHHHHhcCCCCCCCCCCcccccccccc
Q psy10745 13 RRYYETGSFKAGVIGGSKPKVATAPVVDAIASYKRENPTMFAWEIRDRLLAEGICSQDNVPSVSSINRYITY 84 (197)
Q Consensus 13 ~Ry~ETGSIrPG~IGGSKpk~~tp~v~~~I~~~k~e~P~iFaWEIRdrLl~~GvC~~~~vPSvSSI~Rilr~ 84 (197)
.+|.++|.+.|..-+|.+|+..+++..+.|.++.+++|..++|||.++|.++++|..+..+|.++|+|+|+.
T Consensus 70 ~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~ 141 (149)
T 1k78_A 70 GRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRT 141 (149)
T ss_dssp HHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHC
T ss_pred HHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHH
Confidence 488999999998888876778889999999999999999999999999999988766556899999999973
No 7
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=98.18 E-value=8.6e-07 Score=68.66 Aligned_cols=72 Identities=75% Similarity=1.206 Sum_probs=63.6
Q ss_pred cceeeeccCcccCCCCCCCCcCCHHHHHHHHHHHHhCCCcchHHhHHHHHhcCCCCCCCCCCcccccccccc
Q psy10745 13 RRYYETGSFKAGVIGGSKPKVATAPVVDAIASYKRENPTMFAWEIRDRLLAEGICSQDNVPSVSSINRYITY 84 (197)
Q Consensus 13 ~Ry~ETGSIrPG~IGGSKpk~~tp~v~~~I~~~k~e~P~iFaWEIRdrLl~~GvC~~~~vPSvSSI~Rilr~ 84 (197)
.||.++|.+.|..-+|.+|+..+++..+.|.++.+++|++++|||.++|.++++|.....+|.++|+|+|+.
T Consensus 63 ~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~ 134 (159)
T 2k27_A 63 GRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRT 134 (159)
T ss_dssp CCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHH
T ss_pred HHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHH
Confidence 489999999998888876777788889999999999999999999999999998876667899999999974
No 8
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=97.42 E-value=5.3e-05 Score=47.05 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhh
Q psy10745 135 LPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRES 175 (197)
Q Consensus 135 lp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~ 175 (197)
+.++.+..|++|...|+...+||+.++||...|.++|.++.
T Consensus 6 ~~~~~~~~i~~l~~~g~s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 6 INKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SCTTHHHHHHHHHHTTCCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHcc
Confidence 56677889999999999999999999999999999987753
No 9
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=97.39 E-value=0.00011 Score=54.30 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=43.2
Q ss_pred CCCChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 133 RPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 133 rplp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
+.++++.|.+|+.|...|....+||+.|+||..+|++++.||...+
T Consensus 5 ~~~s~~~r~~i~~~~~~G~s~~~ia~~lgis~~Tv~r~~~~~~~~g 50 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYG 50 (141)
T ss_dssp CCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSGGGTT
T ss_pred ccCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHcccccC
Confidence 5789999999999999999999999999999999999999997765
No 10
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=97.24 E-value=2.3e-05 Score=65.50 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhCCCcchHHhHHHHHhcCCCCC----CCCCCccccccccc
Q psy10745 36 APVVDAIASYKRENPTMFAWEIRDRLLAEGICSQ----DNVPSVSSINRYIT 83 (197)
Q Consensus 36 p~v~~~I~~~k~e~P~iFaWEIRdrLl~~GvC~~----~~vPSvSSI~Rilr 83 (197)
++|+.+|++|++++|.+|+|||++.|.+.|++.. ..-+|.|+|+|+++
T Consensus 14 ~~~~~~ie~~~~e~p~~l~~~Ik~~l~~~gitQ~~lA~~~GiSqs~ISr~l~ 65 (194)
T 1ic8_A 14 AHQKAVVETLLQEDPWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLN 65 (194)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHh
Confidence 5789999999999999999999999999999743 34589999999986
No 11
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=96.79 E-value=0.00053 Score=44.22 Aligned_cols=39 Identities=28% Similarity=0.244 Sum_probs=35.6
Q ss_pred CC--hHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHH
Q psy10745 135 LP--DVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 135 lp--~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~r 173 (197)
|. ++....|..|...|....+||+.|+||...|++.+.+
T Consensus 14 l~~~~~~~~~i~~l~~~g~s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 14 VESEDDLVSVAHELAKMGYTVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp ECSHHHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred HhcCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 66 7788899999999999999999999999999998865
No 12
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=96.01 E-value=0.00057 Score=58.52 Aligned_cols=48 Identities=15% Similarity=0.072 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhCCCcchHHhHHHHHhcCCCCC----CCCCCccccccccc
Q psy10745 36 APVVDAIASYKRENPTMFAWEIRDRLLAEGICSQ----DNVPSVSSINRYIT 83 (197)
Q Consensus 36 p~v~~~I~~~k~e~P~iFaWEIRdrLl~~GvC~~----~~vPSvSSI~Rilr 83 (197)
++++..|.+|.+++|.+|+|+||+.+...|++.. ...+|.|+|+++++
T Consensus 15 ~~~~~~Ve~l~~~~~~~~~~~Ik~~r~~~gltQ~evA~~tGISqS~ISq~e~ 66 (221)
T 2h8r_A 15 AEQRAEVDRMLSEDPWRAAKMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLN 66 (221)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHh
Confidence 4678899999999999999999999999999754 34589999999996
No 13
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=95.98 E-value=0.0056 Score=45.32 Aligned_cols=44 Identities=23% Similarity=0.301 Sum_probs=39.6
Q ss_pred CCCChHHHHHHHHHH-hcCCCcc-cchhhhhcccchHHHHHHHhhh
Q psy10745 133 RPLPDVVRQRIVELA-HNGVRPC-DISRQLRVSHGCVSKILSRESN 176 (197)
Q Consensus 133 rplp~~~r~~iv~l~-~~g~r~~-~isr~l~vshgcVskil~ry~~ 176 (197)
+.++++.+.+||+++ +.|.... +||+.++||..+||+++..+..
T Consensus 6 ~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 6 RQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp CCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred eeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhchhh
Confidence 479999999999998 7887776 9999999999999999988765
No 14
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=95.91 E-value=0.01 Score=42.11 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=40.8
Q ss_pred CCCChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 133 RPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 133 rplp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
+..+.+.+.++++++..|....+||++++||..+|.+.+.+|...
T Consensus 21 ~~ys~e~k~~~v~~~~~g~s~~~iA~~~gIs~sTl~rW~k~~~~~ 65 (87)
T 2elh_A 21 RSLTPRDKIHAIQRIHDGESKASVARDIGVPESTLRGWCKNEDKL 65 (87)
T ss_dssp SSCCHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 367889999999999999999999999999999999999998753
No 15
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=94.76 E-value=0.021 Score=37.67 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=39.9
Q ss_pred CCChHHHHHHHHHHhcCCC----cccchhhhhcccchHHHHHHHhhhhc
Q psy10745 134 PLPDVVRQRIVELAHNGVR----PCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 134 plp~~~r~~iv~l~~~g~r----~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
..+++.+.+++++...|.. ..+||++++||+.+|.+-+..|.+..
T Consensus 5 ~ys~efK~~~~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~~~~ 53 (59)
T 2glo_A 5 IFTPHFKLQVLESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCESNLR 53 (59)
T ss_dssp CCCHHHHHHHHHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCcchHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 5678999999988889988 88999999999999999998887653
No 16
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=94.59 E-value=0.02 Score=40.64 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=40.9
Q ss_pred CCCChHHHHHHHHHHh-c-CCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 133 RPLPDVVRQRIVELAH-N-GVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 133 rplp~~~r~~iv~l~~-~-g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
+..+++.+.++|+++. . |....+||+.++||.++|.+.+.+|...+
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~~~~g 51 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYGSNH 51 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHCCCS
T ss_pred CCCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHHhhcC
Confidence 3578899999999985 5 89999999999999999999999998754
No 17
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=94.39 E-value=0.027 Score=36.41 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=33.0
Q ss_pred HHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 141 QRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 141 ~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
.+|+.|...|....+||+.|++|.+.|++.+.|-.+.
T Consensus 4 ~~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 4 RQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHHHTSCCSHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999988876543
No 18
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=94.12 E-value=0.036 Score=38.84 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=36.3
Q ss_pred CCChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 134 PLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 134 plp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
.|++..| +|+.|...|....+||++|+||.+.|++.+.|-.+.
T Consensus 21 ~Lt~~e~-~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRER-DILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHH-HHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3665554 788889999999999999999999999988876544
No 19
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=94.11 E-value=0.038 Score=36.61 Aligned_cols=42 Identities=21% Similarity=0.223 Sum_probs=35.5
Q ss_pred CCChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhh
Q psy10745 134 PLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESN 176 (197)
Q Consensus 134 plp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~ 176 (197)
.|++..+ +|+.|...|....+||+.|++|...|++.+.|-.+
T Consensus 11 ~L~~~e~-~il~~~~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 11 LLTKRER-EVFELLVQDKTTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp CCCHHHH-HHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHH-HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4665555 78888899999999999999999999998888543
No 20
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=93.88 E-value=0.05 Score=35.62 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=34.9
Q ss_pred CChHHHHHHHHH-HhcCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 135 LPDVVRQRIVEL-AHNGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 135 lp~~~r~~iv~l-~~~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
||+..| .|+.| +..|....+||..|++|.+.|++.+.|..+.
T Consensus 16 L~~~~r-~il~l~~~~g~s~~eIA~~lgis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 16 LTTDQR-EALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDA 58 (70)
T ss_dssp SCHHHH-HHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 676655 56666 5999999999999999999999999887553
No 21
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=93.81 E-value=0.036 Score=40.56 Aligned_cols=59 Identities=19% Similarity=0.157 Sum_probs=44.5
Q ss_pred cceeeeccCcccCCCCCCCCcCCHHHHHHHHHHHHhCCCcchHHhHHHHHhcCCCCCCCCCCcccccccccc
Q psy10745 13 RRYYETGSFKAGVIGGSKPKVATAPVVDAIASYKRENPTMFAWEIRDRLLAEGICSQDNVPSVSSINRYITY 84 (197)
Q Consensus 13 ~Ry~ETGSIrPG~IGGSKpk~~tp~v~~~I~~~k~e~P~iFaWEIRdrLl~~GvC~~~~vPSvSSI~Rilr~ 84 (197)
.+|.++|...+ .| +|+..+++....|.++ .++|...+.||.++| |+. .|.++|+|+|+.
T Consensus 44 ~~~~~~g~~~~---~g-r~~~l~~~~~~~i~~~-~~~~~~s~~~i~~~l---g~~-----~s~~tV~r~l~~ 102 (141)
T 1u78_A 44 KDPVSYGTSKR---AP-RRKALSVRDERNVIRA-ASNSCKTARDIRNEL---QLS-----ASKRTILNVIKR 102 (141)
T ss_dssp HSGGGTTCCCC---CC-CCCSSCHHHHHHHHHH-HHHCCCCHHHHHHHT---TCC-----SCHHHHHHHHHH
T ss_pred HcccccCCcCC---CC-CCCcCCHHHHHHHHHH-HhCCCCCHHHHHHHH---CCC-----ccHHHHHHHHHH
Confidence 47777776544 23 4556778888888887 677999999999988 553 389999999974
No 22
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=93.77 E-value=0.043 Score=40.34 Aligned_cols=42 Identities=10% Similarity=0.141 Sum_probs=36.8
Q ss_pred CCChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhh
Q psy10745 134 PLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESN 176 (197)
Q Consensus 134 plp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~ 176 (197)
-||+..|.=++ ++-.|....+||+.|+||.+.|.+.+.|..+
T Consensus 109 ~L~~~~r~v~~-~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~ 150 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRGYSYREIATILSKNLKSIDNTIQRIRK 150 (164)
T ss_dssp HSCHHHHHHHH-HHTTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 47878887766 9999999999999999999999998888654
No 23
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=93.66 E-value=0.063 Score=45.06 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=43.6
Q ss_pred CCChHHHHHHHHHHhcCCCcccchhhhh-------cccchHHHHHHHhhhhcCcccccc
Q psy10745 134 PLPDVVRQRIVELAHNGVRPCDISRQLR-------VSHGCVSKILSRESNLHNYRLVRE 185 (197)
Q Consensus 134 plp~~~r~~iv~l~~~g~r~~~isr~l~-------vshgcVskil~ry~~~~n~~~~~~ 185 (197)
|-..+.|.+|+.+.+.|....+||+.|+ ||...|.+++.||.+ ++..|.++
T Consensus 6 ~~~~~~R~~i~~~~~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~~-g~~~l~~~ 63 (345)
T 3hot_A 6 PNKEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKS-GDFDVDDK 63 (345)
T ss_dssp CCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHTT-CCCCCSCC
T ss_pred ccHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhC-CCccccCC
Confidence 4456889999999999999999999999 999999999999986 65444443
No 24
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=93.54 E-value=0.041 Score=38.93 Aligned_cols=45 Identities=18% Similarity=0.218 Sum_probs=38.2
Q ss_pred CCChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 134 PLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 134 plp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
.|.+..|.+|+++.+..+...|||++++||...||+.|....+.+
T Consensus 27 ~l~~~~r~~Il~~L~~~~~~~eLa~~l~is~~tv~~~L~~L~~~G 71 (96)
T 1y0u_A 27 AVTNPVRRKILRMLDKGRSEEEIMQTLSLSKKQLDYHLKVLEAGF 71 (96)
T ss_dssp HHSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 355678999998776678999999999999999999999876654
No 25
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=93.21 E-value=0.016 Score=46.12 Aligned_cols=44 Identities=11% Similarity=0.057 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
+.++...+|.+|...|....+||+.|+||...|.++|..+...+
T Consensus 143 ~~~~~~~~i~~l~~~G~s~~~Ia~~l~vs~~Tvyr~l~~~~~~~ 186 (193)
T 3uj3_X 143 LTKAEWEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPAKRAHI 186 (193)
T ss_dssp --------------------------------------------
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHhhhcC
Confidence 44567789999999999999999999999999999998876543
No 26
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=92.89 E-value=0.065 Score=38.08 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHhcC-CCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELAHNG-VRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~~~g-~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|.+..|.+|+.+...| +...|||+.+++|...||+-|.+-.+.+
T Consensus 20 l~~~~r~~Il~~L~~~~~~~~ela~~l~is~~tvs~~L~~L~~~G 64 (102)
T 3pqk_A 20 LSHPVRLMLVCTLVEGEFSVGELEQQIGIGQPTLSQQLGVLRESG 64 (102)
T ss_dssp HCSHHHHHHHHHHHTCCBCHHHHHHHHTCCTTHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 5678899999987655 6889999999999999999988875543
No 27
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=92.78 E-value=0.042 Score=37.57 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhc---CCCcccchhhhhcccchHHHHHHHhhhhcC
Q psy10745 138 VVRQRIVELAHN---GVRPCDISRQLRVSHGCVSKILSRESNLHN 179 (197)
Q Consensus 138 ~~r~~iv~l~~~---g~r~~~isr~l~vshgcVskil~ry~~~~n 179 (197)
..+.+|+++... .+...|||++|+||...|+|+|....+.+=
T Consensus 10 ~~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~ 54 (67)
T 2heo_A 10 NLEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDR 54 (67)
T ss_dssp HHHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCc
Confidence 468899997643 478899999999999999999999877654
No 28
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=92.63 E-value=0.041 Score=38.09 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=36.5
Q ss_pred CChHHHHHHHHHHhcC--CCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELAHNG--VRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~~~g--~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|.+..|.+|+.+...+ +...|||+.|+||.+.||+.|.+..+.+
T Consensus 21 l~~~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~g 66 (99)
T 3cuo_A 21 MSHPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEG 66 (99)
T ss_dssp HCSHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTT
T ss_pred hCChHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4457889999877554 7889999999999999999999886543
No 29
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=92.51 E-value=0.099 Score=36.83 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=34.0
Q ss_pred CChHHHHHHHHH-HhcCCCcccchhhhhcccchHHHHHHHhhh
Q psy10745 135 LPDVVRQRIVEL-AHNGVRPCDISRQLRVSHGCVSKILSRESN 176 (197)
Q Consensus 135 lp~~~r~~iv~l-~~~g~r~~~isr~l~vshgcVskil~ry~~ 176 (197)
||+..| +|+.| +..|..-.+||..|+||.+.|.+.|.|..+
T Consensus 38 L~~~~r-~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~ 79 (92)
T 3hug_A 38 LSAEHR-AVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVR 79 (92)
T ss_dssp SCHHHH-HHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 665555 46666 799999999999999999999998888654
No 30
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=92.34 E-value=0.09 Score=38.88 Aligned_cols=43 Identities=26% Similarity=0.232 Sum_probs=35.9
Q ss_pred CChHHHHHHHHHHh-cCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 135 LPDVVRQRIVELAH-NGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 135 lp~~~r~~iv~l~~-~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
|.+..|.+|+.+.. .....+|||+.|++|.+.||+.|.+-.+.
T Consensus 18 L~~~~r~~IL~~L~~~~~~~~eLa~~lgis~stvs~~L~~L~~~ 61 (118)
T 2jsc_A 18 LADPTRCRILVALLDGVCYPGQLAAHLGLTRSNVSNHLSCLRGC 61 (118)
T ss_dssp HSSHHHHHHHHHHHTTCCSTTTHHHHHSSCHHHHHHHHHHHTTT
T ss_pred hCCHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45688999998654 45788999999999999999999887653
No 31
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=92.18 E-value=0.1 Score=38.44 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=38.1
Q ss_pred CCCCChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 132 GRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 132 grplp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
...|++..+ +|+.|...|....+||.+|+||-+.|.+.+.|-++.
T Consensus 32 ~~~Lt~re~-~Vl~l~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKES-EVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHH-HHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 456887776 688999999999999999999999999987776543
No 32
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=92.11 E-value=0.11 Score=36.67 Aligned_cols=43 Identities=16% Similarity=0.109 Sum_probs=36.1
Q ss_pred CCChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 134 PLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 134 plp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
.|++..| +|+.|...|....+||+.|+||.+.|.+.+.|-.+.
T Consensus 29 ~Lt~~e~-~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREM-EILLLIAKGYSNQEIASASHITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHH-HHHHHHHTTCCTTHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4665555 678888999999999999999999999988876553
No 33
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=92.10 E-value=0.042 Score=39.51 Aligned_cols=43 Identities=23% Similarity=0.343 Sum_probs=35.8
Q ss_pred CChHHHHHHH-HHHh-cCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 135 LPDVVRQRIV-ELAH-NGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 135 lp~~~r~~iv-~l~~-~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
|.+..|.+|+ .|.. .++..+|||+.|++|.+.||+-|..-.+.
T Consensus 24 L~~~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 24 MAHPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp HCSHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBTT
T ss_pred hCCHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 5678999999 6654 45788999999999999999988876554
No 34
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=92.06 E-value=0.13 Score=34.72 Aligned_cols=42 Identities=7% Similarity=0.117 Sum_probs=34.5
Q ss_pred CChHHHHHHHHHHh-----cCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 135 LPDVVRQRIVELAH-----NGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 135 lp~~~r~~iv~l~~-----~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
||+..| .|+.|.- .|..-.+||..|++|.+.|.+++.|..+.
T Consensus 11 L~~~er-~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 11 LSEREA-MVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRK 57 (73)
T ss_dssp SCHHHH-HHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 676666 5666665 89999999999999999999988886543
No 35
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=92.02 E-value=0.11 Score=34.67 Aligned_cols=43 Identities=9% Similarity=0.179 Sum_probs=35.5
Q ss_pred CChHHHHHHHHHHh-----cCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELAH-----NGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~~-----~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
||+..| .|+.|.- .|..-.|||..|+||.+.|++++.|-.+.-
T Consensus 6 L~~~er-~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 6 LTAREA-KVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKL 53 (68)
T ss_dssp CCHHHH-HHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGG
T ss_pred CCHHHH-HHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 665555 6777776 899999999999999999999998876543
No 36
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=91.68 E-value=0.12 Score=37.20 Aligned_cols=43 Identities=35% Similarity=0.339 Sum_probs=36.2
Q ss_pred CChHHHHHHHHHHh-cCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 135 LPDVVRQRIVELAH-NGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 135 lp~~~r~~iv~l~~-~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
|.+..|.+|+.+.. .++...|||+.+++|.+.||+.|.+-.+.
T Consensus 23 l~~~~r~~IL~~L~~~~~~~~ela~~l~is~stvs~~L~~L~~~ 66 (106)
T 1r1u_A 23 LGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSV 66 (106)
T ss_dssp TCSHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 55788999998754 45789999999999999999999887643
No 37
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=91.33 E-value=0.16 Score=35.59 Aligned_cols=42 Identities=7% Similarity=0.074 Sum_probs=34.7
Q ss_pred CChHHHHHHHHHHh-----cCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 135 LPDVVRQRIVELAH-----NGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 135 lp~~~r~~iv~l~~-----~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
||+..| .|+.|.- .|..-.+||..|+||.+.|.+++.|-.+.
T Consensus 19 L~~~er-~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 19 LSPREA-MVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRK 65 (87)
T ss_dssp SCHHHH-HHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 676655 5666654 89999999999999999999999887654
No 38
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=91.29 E-value=0.23 Score=37.57 Aligned_cols=41 Identities=12% Similarity=0.277 Sum_probs=34.0
Q ss_pred CChHHHHHHHHH-HhcCCCcccchhhhhcccchHHHHHHHhhh
Q psy10745 135 LPDVVRQRIVEL-AHNGVRPCDISRQLRVSHGCVSKILSRESN 176 (197)
Q Consensus 135 lp~~~r~~iv~l-~~~g~r~~~isr~l~vshgcVskil~ry~~ 176 (197)
||+..| .|+.| +-.|....+||..|+||.+.|.+.|.|..+
T Consensus 136 L~~~~r-~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~ 177 (184)
T 2q1z_A 136 LPEAQR-ALIERAFFGDLTHRELAAETGLPLGTIKSRIRLALD 177 (184)
T ss_dssp SCHHHH-HHHHHHHHSCCSSCCSTTTCCCCCHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 665555 45556 689999999999999999999999988754
No 39
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=91.20 E-value=0.12 Score=37.06 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=34.4
Q ss_pred CChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhh
Q psy10745 135 LPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESN 176 (197)
Q Consensus 135 lp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~ 176 (197)
|++.. .+|+.|...|....+||+.|+||.+.|.+.+.|-.+
T Consensus 28 Lt~~e-~~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 68 (95)
T 3c57_A 28 LTDQE-RTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLA 68 (95)
T ss_dssp CCHHH-HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 66554 477888899999999999999999999997777654
No 40
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=91.17 E-value=0.12 Score=36.85 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=36.4
Q ss_pred CChHHHHHHHHHH-hcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELA-HNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|.+..|.+|+.+. +.++...|||+.+++|.+.||+.|.+..+.+
T Consensus 18 l~~~~r~~IL~~L~~~~~~~~ela~~l~is~~tv~~~l~~L~~~g 62 (114)
T 2oqg_A 18 LSDETRWEILTELGRADQSASSLATRLPVSRQAIAKHLNALQACG 62 (114)
T ss_dssp TTCHHHHHHHHHHHHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTT
T ss_pred hCChHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4567889998865 4568889999999999999999999886543
No 41
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=91.15 E-value=0.17 Score=37.93 Aligned_cols=43 Identities=19% Similarity=0.154 Sum_probs=35.1
Q ss_pred CCChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhh
Q psy10745 134 PLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESN 176 (197)
Q Consensus 134 plp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~ 176 (197)
-||+..|.-+.-.+..|....+||..|+||.+.|++.+.|..+
T Consensus 22 ~L~~~~r~vl~l~y~~g~s~~EIA~~lgiS~~tV~~~l~ra~~ 64 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDYSLAEIADEFGVSRQAVYDNIKRTEK 64 (113)
T ss_dssp GSCHHHHHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3777776544444699999999999999999999998888654
No 42
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=90.84 E-value=0.093 Score=36.89 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHHhc-CCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELAHN-GVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~~~-g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|.+..|.+|+++... .+..+|||+.++||...||+-|.+-.+.+
T Consensus 20 l~~~~r~~Il~~L~~~~~~~~ela~~l~is~~tvs~~L~~L~~~G 64 (98)
T 3jth_A 20 MANERRLQILCMLHNQELSVGELCAKLQLSQSALSQHLAWLRRDG 64 (98)
T ss_dssp HCSHHHHHHHHHTTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 566889999987655 46889999999999999999998876544
No 43
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=90.69 E-value=0.11 Score=35.77 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=33.7
Q ss_pred HHHHHHHHh--cCCCcccchhhhhcccchHHHHHHHhhhhcC
Q psy10745 140 RQRIVELAH--NGVRPCDISRQLRVSHGCVSKILSRESNLHN 179 (197)
Q Consensus 140 r~~iv~l~~--~g~r~~~isr~l~vshgcVskil~ry~~~~n 179 (197)
|.+|+++.. ..+...|||+.++||...|++.|.+-.+.+=
T Consensus 2 r~~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~Gl 43 (81)
T 2htj_A 2 KNEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGM 43 (81)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 678888764 3588999999999999999999999877653
No 44
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=90.63 E-value=0.11 Score=40.81 Aligned_cols=41 Identities=20% Similarity=0.407 Sum_probs=33.7
Q ss_pred CCCCChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHH
Q psy10745 132 GRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 132 grplp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~r 173 (197)
|+|-+. ...+|.+|+..|....+||+.|+||...|.++|.+
T Consensus 141 Gr~~~~-~~~~i~~~~~~G~s~~~Ia~~l~is~~tv~r~l~~ 181 (183)
T 1gdt_A 141 GRKRKI-DRDAVLNMWQQGLGASHISKTMNIARSTVYKVINE 181 (183)
T ss_dssp SSCCCS-CHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred CCCCCC-CHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 454332 23589999999999999999999999999999864
No 45
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=90.54 E-value=0.17 Score=33.99 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=34.6
Q ss_pred CChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 135 LPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 135 lp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
|++.. .+|+.|...|....+||..|++|.+.|.+.+.|-.+.
T Consensus 17 L~~~e-~~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERE-RQVLSAVVAGLPNKSIAYDLDISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHH-HHHHHHHTTTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45444 5778888999999999999999999999988776543
No 46
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=90.31 E-value=0.065 Score=37.00 Aligned_cols=45 Identities=16% Similarity=0.119 Sum_probs=37.0
Q ss_pred CCChHHHHHHHHHH--hcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 134 PLPDVVRQRIVELA--HNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 134 plp~~~r~~iv~l~--~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
-|.+..|.+|+.+. ..++...+||+.+++|.+.||+.|.+-.+.+
T Consensus 12 ~l~~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~g 58 (100)
T 1ub9_A 12 ILGNPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNG 58 (100)
T ss_dssp HHHSHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred ccCChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 35567889999854 4568889999999999999999999986654
No 47
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=90.10 E-value=0.056 Score=43.09 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred CCCC--CChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhh
Q psy10745 131 NGRP--LPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESN 176 (197)
Q Consensus 131 ngrp--lp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~ 176 (197)
.||| +.++...+|.+|+..|....+||+.|+||...|.++|..+..
T Consensus 137 ~Gr~p~~~~~~v~~i~~l~~~G~s~~~Ia~~l~vs~~T~yr~l~~~~~ 184 (193)
T 3plo_X 137 GGRPPKLTKAEWEQAGRLLAQGIPRKQVALIYDVALSTLYKKHPAKRA 184 (193)
T ss_dssp ------------------------------------------------
T ss_pred CCcCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHhhhHH
Confidence 4564 334567789999999999999999999999999998887543
No 48
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=90.10 E-value=0.15 Score=36.93 Aligned_cols=46 Identities=17% Similarity=0.168 Sum_probs=37.7
Q ss_pred ChHHHHHHHHHHhc-CCCcccchhhhhcccchHHHHHHHhhhhcCccc
Q psy10745 136 PDVVRQRIVELAHN-GVRPCDISRQLRVSHGCVSKILSRESNLHNYRL 182 (197)
Q Consensus 136 p~~~r~~iv~l~~~-g~r~~~isr~l~vshgcVskil~ry~~~~n~~~ 182 (197)
.+..|.+|+.+... +....+||+.|++|.+.||+.|.+-.+ .++-.
T Consensus 30 ~~~~~~~il~~L~~~~~s~~ela~~l~is~stvsr~l~~Le~-~Glv~ 76 (119)
T 2lkp_A 30 ATPSRLMILTQLRNGPLPVTDLAEAIGMEQSAVSHQLRVLRN-LGLVV 76 (119)
T ss_dssp CCHHHHHHHHHHHHCCCCHHHHHHHHSSCHHHHHHHHHHHHH-HCSEE
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHHHH-CCCEE
Confidence 34678888887666 899999999999999999999999877 44443
No 49
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=90.02 E-value=0.18 Score=36.28 Aligned_cols=43 Identities=19% Similarity=0.148 Sum_probs=35.8
Q ss_pred CCChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 134 PLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 134 plp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
.|++.. .+|+.|...|....+||+.|+||...|.+-+.|-++.
T Consensus 29 ~Lt~rE-~~Vl~l~~~G~s~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 29 VLTPRE-CLILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp CCCHHH-HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCHHH-HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 466544 4688899999999999999999999999988776554
No 50
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=90.00 E-value=0.14 Score=37.68 Aligned_cols=43 Identities=9% Similarity=0.133 Sum_probs=36.1
Q ss_pred CChHHHHHHHHHHhc-CCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 135 LPDVVRQRIVELAHN-GVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 135 lp~~~r~~iv~l~~~-g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
|.+..|.+|+.+... .+..+|||+.|+||.+.||+.|.+-.+.
T Consensus 15 l~~~~R~~Il~~L~~~~~~~~eLa~~l~is~~tvs~hL~~L~~~ 58 (118)
T 3f6o_A 15 LADPTRRAVLGRLSRGPATVSELAKPFDMALPSFMKHIHFLEDS 58 (118)
T ss_dssp HTSHHHHHHHHHHHTCCEEHHHHHTTCCSCHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHhCCCCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 667899999997754 4678899999999999999988876543
No 51
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=89.93 E-value=0.16 Score=42.53 Aligned_cols=57 Identities=14% Similarity=0.243 Sum_probs=42.5
Q ss_pred cceeeec--cCcccCCCCCCCCcCCHHHHHHHHHHHHhCCCcchHHhHHHHHhcCCCCCCCCCCcccccccccc
Q psy10745 13 RRYYETG--SFKAGVIGGSKPKVATAPVVDAIASYKRENPTMFAWEIRDRLLAEGICSQDNVPSVSSINRYITY 84 (197)
Q Consensus 13 ~Ry~ETG--SIrPG~IGGSKpk~~tp~v~~~I~~~k~e~P~iFaWEIRdrLl~~GvC~~~~vPSvSSI~Rilr~ 84 (197)
.||.+ | ++.+.+-+| +|+..++ +.|.++.+++|..++.||.+.| +| |.++|+|+|+.
T Consensus 51 ~r~~~-g~~~l~~~~r~g-rp~~~~~---~~i~~~v~~~~~~t~~~ia~~l---~v-------s~~tV~r~L~~ 109 (345)
T 3hot_A 51 QRFKS-GDFDVDDKEHGK-PPKRYED---AELQALLDEDDAQTQKQLAEQL---EV-------SQQAVSNRLRE 109 (345)
T ss_dssp HHHTT-CCCCCSCCCCCC-CCCSSCH---HHHHHHHHHCSCCCHHHHHHHT---TS-------CHHHHHHHHHH
T ss_pred HHHhC-CCccccCCCCCC-CCCcccH---HHHHHHHHhCccchHHHHHHHH---CC-------CHHHHHHHHHH
Confidence 57776 5 578888888 5555555 4455556789999999999988 33 78999999975
No 52
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=89.80 E-value=0.065 Score=39.05 Aligned_cols=44 Identities=16% Similarity=0.040 Sum_probs=35.4
Q ss_pred CChHHHHHHHHHHhc-CCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELAHN-GVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~~~-g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|.+..|.+|+.+... ++...|||+.|+||.+.||+.|.+..+.+
T Consensus 22 l~~~~r~~IL~~L~~~~~s~~eLa~~lgis~stvs~~L~~L~~~G 66 (108)
T 2kko_A 22 LANGRRLQILDLLAQGERAVEAIATATGMNLTTASANLQALKSGG 66 (108)
T ss_dssp HTTSTTHHHHHHHTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 445678889887654 46778999999999999999999876654
No 53
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=89.80 E-value=0.16 Score=38.06 Aligned_cols=42 Identities=29% Similarity=0.336 Sum_probs=36.1
Q ss_pred CChHHHHHHHHHHhc-CCCcccchhhhhcccchHHHHHHHhhh
Q psy10745 135 LPDVVRQRIVELAHN-GVRPCDISRQLRVSHGCVSKILSRESN 176 (197)
Q Consensus 135 lp~~~r~~iv~l~~~-g~r~~~isr~l~vshgcVskil~ry~~ 176 (197)
|.+..|.+|+.+... +...++||+.|++|.+.||+.|.+-.+
T Consensus 43 L~~~~rl~IL~~L~~~~~s~~ela~~lgis~stvs~~L~~Le~ 85 (122)
T 1r1t_A 43 LADPNRLRLLSLLARSELCVGDLAQAIGVSESAVSHQLRSLRN 85 (122)
T ss_dssp HCCHHHHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456789999987655 678899999999999999999998877
No 54
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=89.76 E-value=0.24 Score=38.65 Aligned_cols=41 Identities=17% Similarity=0.308 Sum_probs=34.2
Q ss_pred CChHHHHHHHHH-HhcCCCcccchhhhhcccchHHHHHHHhhh
Q psy10745 135 LPDVVRQRIVEL-AHNGVRPCDISRQLRVSHGCVSKILSRESN 176 (197)
Q Consensus 135 lp~~~r~~iv~l-~~~g~r~~~isr~l~vshgcVskil~ry~~ 176 (197)
||+..| .|+.| +-.|....+||+.|+||.+.|++++.|..+
T Consensus 188 L~~~~r-~vl~l~~~~g~s~~EIA~~lgis~~~V~~~~~ra~~ 229 (239)
T 1rp3_A 188 LPEREK-LVIQLIFYEELPAKEVAKILETSVSRVSQLKAKALE 229 (239)
T ss_dssp SCHHHH-HHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 776666 45555 589999999999999999999999988654
No 55
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=89.62 E-value=0.098 Score=38.88 Aligned_cols=43 Identities=23% Similarity=0.229 Sum_probs=35.9
Q ss_pred CChHHHHHHHHHHh--cCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 135 LPDVVRQRIVELAH--NGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 135 lp~~~r~~iv~l~~--~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
|.+..|.+|+.+.. .++..++||+.|++|.+.||+.|..-.+.
T Consensus 39 l~~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~ 83 (122)
T 1u2w_A 39 IADENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQ 83 (122)
T ss_dssp HHSHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45678999998765 56788999999999999999999887643
No 56
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=89.57 E-value=0.18 Score=34.82 Aligned_cols=45 Identities=11% Similarity=0.216 Sum_probs=36.4
Q ss_pred CCChHHHHHHHHHH--hcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 134 PLPDVVRQRIVELA--HNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 134 plp~~~r~~iv~l~--~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
-|....+..|+.+. ..++...|||+.++||...||++|.+-.+.+
T Consensus 18 ~l~~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g 64 (109)
T 2d1h_A 18 KITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELG 64 (109)
T ss_dssp TCCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 45666667777776 4678999999999999999999999886544
No 57
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=89.21 E-value=0.28 Score=37.29 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=34.0
Q ss_pred CChHHHHHHHHH-HhcCCCcccchhhhhcccchHHHHHHHhhh
Q psy10745 135 LPDVVRQRIVEL-AHNGVRPCDISRQLRVSHGCVSKILSRESN 176 (197)
Q Consensus 135 lp~~~r~~iv~l-~~~g~r~~~isr~l~vshgcVskil~ry~~ 176 (197)
||+..| .|+.| +-.|....+||..|++|.+.|.+.|.|..+
T Consensus 141 L~~~~r-~vl~l~~~~g~s~~EIA~~lgis~~tV~~~l~ra~~ 182 (194)
T 1or7_A 141 LPEDLR-MAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRARE 182 (194)
T ss_dssp SCHHHH-HHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCHHHH-HHhHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 665555 56666 579999999999999999999999988754
No 58
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=89.06 E-value=0.34 Score=36.56 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=35.3
Q ss_pred CCChHHHHHHHHHH-hcCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 134 PLPDVVRQRIVELA-HNGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 134 plp~~~r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
.+.. .-.+|..|+ ..|..-.|||++|+||..-||++|.+..+.
T Consensus 18 ~~~~-~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~ 61 (101)
T 2w7n_A 18 EVGQ-QTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAA 61 (101)
T ss_dssp CCCH-HHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ChHH-HHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3543 445666665 799999999999999999999999998866
No 59
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=88.74 E-value=0.33 Score=36.12 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=33.8
Q ss_pred CChHHHHHHHHH-HhcCCCcccchhhhhcccchHHHHHHHhhh
Q psy10745 135 LPDVVRQRIVEL-AHNGVRPCDISRQLRVSHGCVSKILSRESN 176 (197)
Q Consensus 135 lp~~~r~~iv~l-~~~g~r~~~isr~l~vshgcVskil~ry~~ 176 (197)
||+..| .|+.| +..|....+||..|++|.+.|.+.|.|-.+
T Consensus 26 L~~~~r-~vl~l~~~~g~s~~EIA~~lgiS~~tV~~~l~ra~~ 67 (113)
T 1xsv_A 26 LTNKQR-NYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGD 67 (113)
T ss_dssp SCHHHH-HHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 676665 45555 589999999999999999999998887654
No 60
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=88.52 E-value=0.15 Score=39.84 Aligned_cols=45 Identities=16% Similarity=0.219 Sum_probs=37.8
Q ss_pred CCChHHHHHHHHHHhc-CCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 134 PLPDVVRQRIVELAHN-GVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 134 plp~~~r~~iv~l~~~-g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
-|.+..|.+|+.+... .+..++||+.|++|.+.||+-|..-.+.+
T Consensus 54 aL~~p~R~~IL~~L~~~~~t~~eLa~~lgls~stvs~hL~~L~~aG 99 (151)
T 3f6v_A 54 VAAEPTRRRLVQLLTSGEQTVNNLAAHFPASRSAISQHLRVLTEAG 99 (151)
T ss_dssp HHTSHHHHHHHHHGGGCCEEHHHHHTTSSSCHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4677999999998754 57899999999999999999888775544
No 61
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=88.49 E-value=0.16 Score=36.53 Aligned_cols=47 Identities=15% Similarity=0.230 Sum_probs=40.2
Q ss_pred CCCChHHHHHHHHHHh-cC-------CCcccchhhhhcccchHHHHHHHhhhhcC
Q psy10745 133 RPLPDVVRQRIVELAH-NG-------VRPCDISRQLRVSHGCVSKILSRESNLHN 179 (197)
Q Consensus 133 rplp~~~r~~iv~l~~-~g-------~r~~~isr~l~vshgcVskil~ry~~~~n 179 (197)
+..+.+.+.++|+++. .| ....+||++++||..+|.+-+..|...+.
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~~~~~ 59 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTG 59 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHHHHhccc
Confidence 4578899999999984 33 78889999999999999999999987654
No 62
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=87.14 E-value=0.31 Score=37.44 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=37.1
Q ss_pred CCCChHHHHHHHHHH-h--cCCCcccchh----hh--hcccchHHHHHHHhhh
Q psy10745 133 RPLPDVVRQRIVELA-H--NGVRPCDISR----QL--RVSHGCVSKILSRESN 176 (197)
Q Consensus 133 rplp~~~r~~iv~l~-~--~g~r~~~isr----~l--~vshgcVskil~ry~~ 176 (197)
+.|..+.+.+|++.+ + .+++..|+|+ +. +||.++||+||..-.+
T Consensus 10 ~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 10 RAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYS 62 (144)
T ss_dssp SCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence 368899999999999 3 4567779999 76 9999999999987554
No 63
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=86.82 E-value=0.45 Score=38.46 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=37.3
Q ss_pred CCCChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 133 RPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 133 rplp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
..|++..| +|+.|...|....+||++|+||.+.|.+-+.|-++.
T Consensus 174 ~~Lt~~e~-~vl~~~~~g~s~~eIa~~l~is~~tV~~~~~~~~~k 217 (236)
T 2q0o_A 174 QMLSPREM-LCLVWASKGKTASVTANLTGINARTVQHYLDKARAK 217 (236)
T ss_dssp GSCCHHHH-HHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 35787776 588999999999999999999999999988776543
No 64
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=86.54 E-value=0.46 Score=38.36 Aligned_cols=44 Identities=14% Similarity=-0.045 Sum_probs=37.6
Q ss_pred CCCChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 133 RPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 133 rplp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
..|++..| +|+.|...|....+||+.|++|.+.|.+-|.|-++.
T Consensus 172 ~~Lt~~e~-~vl~~~~~g~s~~eIa~~l~is~~tV~~~~~~~~~k 215 (234)
T 1l3l_A 172 AWLDPKEA-TYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKR 215 (234)
T ss_dssp CCCCHHHH-HHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 35887776 788999999999999999999999999988776543
No 65
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=86.41 E-value=0.38 Score=36.34 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcC-CCcccchhhhhcccchHHHHHHHhhhhcC
Q psy10745 138 VVRQRIVELAHNG-VRPCDISRQLRVSHGCVSKILSRESNLHN 179 (197)
Q Consensus 138 ~~r~~iv~l~~~g-~r~~~isr~l~vshgcVskil~ry~~~~n 179 (197)
..|-.|..|-..| ..--+||++|+||...||.| +|+-+.-+
T Consensus 45 ~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~ 86 (101)
T 1jhg_A 45 GTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAP 86 (101)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSC
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHcc
Confidence 4568888888899 88899999999999999999 88765443
No 66
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=86.04 E-value=0.96 Score=32.78 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=39.6
Q ss_pred ccCCCCCChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 129 FVNGRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 129 ~~ngrplp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
....-.|+.....=+..|+..|+.+.+||+.++||.+.||++|.+-.+.+
T Consensus 30 ~~~~~~lt~~~~~iL~~l~~~~~t~~eLa~~l~~s~~tvs~~l~~L~~~G 79 (146)
T 3tgn_A 30 CTSEVALTNTQEHILMLLSEESLTNSELARRLNVSQAAVTKAIKSLVKEG 79 (146)
T ss_dssp CCCSSCCCHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred hhhccCCCHHHHHHHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 34445677666666666778889999999999999999999999876543
No 67
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=85.38 E-value=0.49 Score=39.27 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=36.0
Q ss_pred CCCChH-HHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhh
Q psy10745 133 RPLPDV-VRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRES 175 (197)
Q Consensus 133 rplp~~-~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~ 175 (197)
||++.. .=.++..|+..|+.-.+||+.|+||+.-||++|.+..
T Consensus 6 ke~sl~eiG~ria~~y~~g~tQ~eIA~~lGiSr~~VSR~L~~A~ 49 (192)
T 1zx4_A 6 LQHSIREIGLRLMRMKNDGMSQKDIAAKEGLSQAKVTRALQAAS 49 (192)
T ss_dssp CSSCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHhc
Confidence 344443 4567888999999999999999999999999998865
No 68
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=85.33 E-value=0.4 Score=34.88 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=32.8
Q ss_pred HHHHHHHH-HHhcCCCcccchhhh-hcccchHHHHHHHhhhhc
Q psy10745 138 VVRQRIVE-LAHNGVRPCDISRQL-RVSHGCVSKILSRESNLH 178 (197)
Q Consensus 138 ~~r~~iv~-l~~~g~r~~~isr~l-~vshgcVskil~ry~~~~ 178 (197)
..+..|+. |++.+++..+||+.+ +||.+.||+.|.+-.+.+
T Consensus 22 ~~~~~IL~~L~~~~~~~~eLa~~l~~is~~tvs~~L~~Le~~G 64 (112)
T 1z7u_A 22 KWKLSLMDELFQGTKRNGELMRALDGITQRVLTDRLREMEKDG 64 (112)
T ss_dssp TTHHHHHHHHHHSCBCHHHHHHHSTTCCHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHhCCCCHHHHHHHhccCCHHHHHHHHHHHHHCC
Confidence 34556654 566779999999999 999999999999876544
No 69
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=84.99 E-value=0.24 Score=34.89 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=33.5
Q ss_pred hHHHHHHHHHH-hc----CCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 137 DVVRQRIVELA-HN----GVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 137 ~~~r~~iv~l~-~~----g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
.+..++|+++- +. ++...+||++|+||...|.+.|.+-.+.+
T Consensus 13 ~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G 59 (77)
T 1qgp_A 13 QDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKG 59 (77)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34557887754 33 37889999999999999999999987765
No 70
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=84.60 E-value=0.59 Score=35.06 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHhc--CCCcccchhhhhcccchHHHHHHHhhhhcC
Q psy10745 137 DVVRQRIVELAHN--GVRPCDISRQLRVSHGCVSKILSRESNLHN 179 (197)
Q Consensus 137 ~~~r~~iv~l~~~--g~r~~~isr~l~vshgcVskil~ry~~~~n 179 (197)
++.+.+|+++.+. .+...+||+.+++|...|++.|.+-.+.+=
T Consensus 2 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~ 46 (150)
T 2pn6_A 2 DEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGV 46 (150)
T ss_dssp CHHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCc
Confidence 4678899988765 367789999999999999999988876653
No 71
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=83.84 E-value=0.48 Score=37.95 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCCcccchhhhhcccchHHHHHHHh
Q psy10745 140 RQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRE 174 (197)
Q Consensus 140 r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry 174 (197)
-.+|.+|+..|....+||+.|+||...|.++|...
T Consensus 165 v~~i~~~~~~G~s~~~Ia~~l~is~~tv~r~l~~~ 199 (209)
T 2r0q_C 165 YHRVVEMLEEGQAISKIAKEVNITRQTVYRIKHDN 199 (209)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhcc
Confidence 36899999999999999999999999999988754
No 72
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=83.46 E-value=0.65 Score=34.26 Aligned_cols=41 Identities=10% Similarity=0.242 Sum_probs=33.6
Q ss_pred CChHHHHHHHHHHh-----cCCCcccchhhhhcccchHHHHHHHhhh
Q psy10745 135 LPDVVRQRIVELAH-----NGVRPCDISRQLRVSHGCVSKILSRESN 176 (197)
Q Consensus 135 lp~~~r~~iv~l~~-----~g~r~~~isr~l~vshgcVskil~ry~~ 176 (197)
||+. .+.|+.|.- .|..-.+||..|+||.+.|++++.|..+
T Consensus 20 Lp~r-eR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlk 65 (99)
T 3t72_q 20 LTAR-EAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALR 65 (99)
T ss_pred CCHH-HHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6654 446788876 6899999999999999999999887643
No 73
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=83.37 E-value=0.32 Score=33.90 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=28.4
Q ss_pred HHHHH-HHHhcCCCcccchhhhhcccchHHHHHHH
Q psy10745 140 RQRIV-ELAHNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 140 r~~iv-~l~~~g~r~~~isr~l~vshgcVskil~r 173 (197)
+.+|. .|.+.|+...++|++++||.+.||+++.+
T Consensus 11 ~~ri~~~l~~~glT~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 11 RADVIAGLKKRKLSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHSSCHHHHHHTTTS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 44444 46689999999999999999999988764
No 74
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=83.36 E-value=0.61 Score=37.08 Aligned_cols=42 Identities=21% Similarity=0.116 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhCCCcchHHhHHHHHhcCCCCCCCCCCcccccccccc
Q psy10745 38 VVDAIASYKRENPTMFAWEIRDRLLAEGICSQDNVPSVSSINRYITY 84 (197)
Q Consensus 38 v~~~I~~~k~e~P~iFaWEIRdrLl~~GvC~~~~vPSvSSI~Rilr~ 84 (197)
-.++|.++-++++..+..||.+.|.++|+-. |.++|+|.|+.
T Consensus 6 R~~~I~~li~~~~~~tq~eL~~~L~~~G~~V-----tqaTisRDL~e 47 (149)
T 1b4a_A 6 RHIKIREIIMSNDIETQDELVDRLREAGFNV-----TQATVSRDIKE 47 (149)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHTTCCC-----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCccHHHHHHHHHHcCCCc-----CHHHHHHHHHH
Confidence 4567999989999999999999999999987 99999999985
No 75
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=83.29 E-value=0.31 Score=37.00 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=35.1
Q ss_pred CChHHHHHHHHH-HhcCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 135 LPDVVRQRIVEL-AHNGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 135 lp~~~r~~iv~l-~~~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
||+..| .|+.| +-.|....+||..|++|-+.|.+.|.|..+.
T Consensus 94 Lp~~~r-~vl~L~~~~g~s~~EIA~~lgis~~tV~~~l~rar~~ 136 (157)
T 2lfw_A 94 MTPLSR-QALLLTAMEGFSPEDAAYLIEVDTSEVETLVTEALAE 136 (157)
T ss_dssp SCTTHH-HHHTTTSSSCCCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 776666 56666 5899999999999999999999999887653
No 76
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=83.10 E-value=0.48 Score=34.61 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=36.5
Q ss_pred ccCCCCCChHHHHHHHHHH-hcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 129 FVNGRPLPDVVRQRIVELA-HNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 129 ~~ngrplp~~~r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
++++.- ...++++|+++- +.|+..-+||++|+||...|.+.|.+-.+.+
T Consensus 9 ~~~d~~-~~~~~~~IL~lL~~~g~sa~eLAk~LgiSk~aVr~~L~~Le~eG 58 (82)
T 1oyi_A 9 YIDERS-NAEIVCEAIKTIGIEGATAAQLTRQLNMEKREVNKALYDLQRSA 58 (82)
T ss_dssp ----CC-SHHHHHHHHHHHSSSTEEHHHHHHHSSSCHHHHHHHHHHHHHHT
T ss_pred Cccccc-hHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 344442 237889998865 6778888999999999999999999886644
No 77
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=82.85 E-value=0.86 Score=37.47 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=36.4
Q ss_pred CCCChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhh
Q psy10745 133 RPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESN 176 (197)
Q Consensus 133 rplp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~ 176 (197)
..||+..| .|+.|..+|..-.+||..|++|-+.|..-|.|-.+
T Consensus 196 ~~L~~~er-evl~L~~~G~s~~EIA~~L~iS~~TVk~~l~ra~~ 238 (258)
T 3clo_A 196 NILSEREK-EILRCIRKGLSSKEIAATLYISVNTVNRHRQNILE 238 (258)
T ss_dssp TSSCHHHH-HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ccCCHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 36887666 57777789999999999999999999998888654
No 78
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=82.77 E-value=0.25 Score=38.42 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=0.0
Q ss_pred CChHHHHHHHHH-HhcCCCcccchhhhhcccchHHHHHHHhhh
Q psy10745 135 LPDVVRQRIVEL-AHNGVRPCDISRQLRVSHGCVSKILSRESN 176 (197)
Q Consensus 135 lp~~~r~~iv~l-~~~g~r~~~isr~l~vshgcVskil~ry~~ 176 (197)
||+.. +.|+.| +-.|....+||+.|+||.+.|++++.|-.+
T Consensus 199 L~~~~-r~vl~l~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~ 240 (243)
T 1l0o_C 199 LDERE-RLIVYLRYYKDQTQSEVASRLGISQVQMSRLEKKILQ 240 (243)
T ss_dssp -------------------------------------------
T ss_pred CCHHH-HHHHHHHHhcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 66554 456666 679999999999999999999999988643
No 79
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=82.74 E-value=0.54 Score=33.68 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=35.9
Q ss_pred CChHHHHHHHHHHh-cC----CCcccchhhhhcccchHHHHHHHhhhhcC
Q psy10745 135 LPDVVRQRIVELAH-NG----VRPCDISRQLRVSHGCVSKILSRESNLHN 179 (197)
Q Consensus 135 lp~~~r~~iv~l~~-~g----~r~~~isr~l~vshgcVskil~ry~~~~n 179 (197)
+..+..++|+++.. .| +...+||++|+||...|.+.|.|-.+.+=
T Consensus 7 ~~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~ 56 (81)
T 1qbj_A 7 IYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGK 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 34566788888663 34 67799999999999999999999877653
No 80
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=82.64 E-value=0.42 Score=34.22 Aligned_cols=42 Identities=17% Similarity=0.122 Sum_probs=34.4
Q ss_pred HHHHHHHHHH-hcC--CCcccchhhhhcccchHHHHHHHhhhhcC
Q psy10745 138 VVRQRIVELA-HNG--VRPCDISRQLRVSHGCVSKILSRESNLHN 179 (197)
Q Consensus 138 ~~r~~iv~l~-~~g--~r~~~isr~l~vshgcVskil~ry~~~~n 179 (197)
+.+.+|+.+. ..| +..++||.+++||...||+.|.+-.+.+=
T Consensus 18 ~~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~Gl 62 (110)
T 1q1h_A 18 DDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGF 62 (110)
T ss_dssp STTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 4678888765 455 67889999999999999999999876653
No 81
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=81.95 E-value=0.52 Score=32.95 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=28.8
Q ss_pred HHHhc--CCCcccchhhhhcccch-HHHHHHHhhhhc
Q psy10745 145 ELAHN--GVRPCDISRQLRVSHGC-VSKILSRESNLH 178 (197)
Q Consensus 145 ~l~~~--g~r~~~isr~l~vshgc-Vskil~ry~~~~ 178 (197)
.+++. ++.+.|||+.+++|.+. ||++|.+..+.+
T Consensus 23 ~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~G 59 (95)
T 2pg4_A 23 EFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAG 59 (95)
T ss_dssp HHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTT
T ss_pred HHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCC
Confidence 44555 59999999999999999 999999987654
No 82
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=81.73 E-value=0.62 Score=34.34 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=30.3
Q ss_pred hHHHHHHHHHH-hcCCCcccchhhhhcccchHHHHHHH
Q psy10745 137 DVVRQRIVELA-HNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 137 ~~~r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~r 173 (197)
.+-+.+|+++. ..++...|||+.++||...||+.|+-
T Consensus 6 ~~R~~~I~~~l~~~~~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 6 KERTIKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 34456788755 56789999999999999999999975
No 83
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=81.03 E-value=0.56 Score=33.85 Aligned_cols=42 Identities=14% Similarity=0.242 Sum_probs=32.7
Q ss_pred hHHHHHHHH-HHhcCCCcccchhhh-hcccchHHHHHHHhhhhc
Q psy10745 137 DVVRQRIVE-LAHNGVRPCDISRQL-RVSHGCVSKILSRESNLH 178 (197)
Q Consensus 137 ~~~r~~iv~-l~~~g~r~~~isr~l-~vshgcVskil~ry~~~~ 178 (197)
+..+.+|+. |+....+.+|||+.+ +||.+-||+.|.+-.+.+
T Consensus 13 ~~~~~~IL~~L~~~~~~~~eLa~~l~~is~~tls~~L~~Le~~G 56 (107)
T 2hzt_A 13 GKWKXVILXHLTHGKKRTSELKRLMPNITQKMLTQQLRELEADG 56 (107)
T ss_dssp STTHHHHHHHHTTCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHhCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCC
Confidence 344666765 455558999999999 999999999998875543
No 84
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=80.80 E-value=0.97 Score=30.89 Aligned_cols=41 Identities=27% Similarity=0.272 Sum_probs=33.3
Q ss_pred HHHHHHHHHH--hcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 138 VVRQRIVELA--HNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 138 ~~r~~iv~l~--~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
..+.+|+.+. ..++...+||+.+++|.+.||++|.+-.+.+
T Consensus 20 ~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~g 62 (109)
T 1sfx_A 20 PSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRG 62 (109)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 4566677655 3578999999999999999999999886654
No 85
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=80.56 E-value=1.1 Score=37.72 Aligned_cols=42 Identities=21% Similarity=0.160 Sum_probs=34.6
Q ss_pred CChHHHHHHHHHHhc-CCCcccchhhhhcccchHHHHHHHhhh
Q psy10745 135 LPDVVRQRIVELAHN-GVRPCDISRQLRVSHGCVSKILSRESN 176 (197)
Q Consensus 135 lp~~~r~~iv~l~~~-g~r~~~isr~l~vshgcVskil~ry~~ 176 (197)
|.+..|.+|+.+... .+..++||+.+++|.+.||+.|..-.+
T Consensus 9 L~~~~R~~IL~~L~~g~~s~~ELa~~lglS~stVs~hL~~Le~ 51 (232)
T 2qlz_A 9 LGNKVRRDLLSHLTCMECYFSLLSSKVSVSSTAVAKHLKIMER 51 (232)
T ss_dssp HTSHHHHHHHHHHTTTTTCSSSSCTTCCCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456789999987654 478899999999999999998876544
No 86
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=80.13 E-value=0.93 Score=36.96 Aligned_cols=44 Identities=11% Similarity=0.049 Sum_probs=36.9
Q ss_pred CCCChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 133 RPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 133 rplp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
..|++.++ +|+.|...|....+||++|+||...|.+-+.+-++.
T Consensus 174 ~~Lt~re~-~vl~~~~~G~s~~eIa~~l~is~~tV~~~~~~~~~k 217 (237)
T 3szt_A 174 VRLTARET-EMLKWTAVGKTYGEIGLILSIDQRTVKFHIVNAMRK 217 (237)
T ss_dssp CCCCHHHH-HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45775554 799999999999999999999999999977776544
No 87
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=79.82 E-value=0.64 Score=35.65 Aligned_cols=41 Identities=12% Similarity=-0.013 Sum_probs=32.2
Q ss_pred HHHHHHHHH-HhcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 138 VVRQRIVEL-AHNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 138 ~~r~~iv~l-~~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
.-+..|+.. .....+..||++.++||.+.||+.|.+-.+.+
T Consensus 24 ~w~l~IL~~L~~g~~~~~eLa~~lgis~~tls~~L~~Le~~G 65 (146)
T 2f2e_A 24 GWSMLIVRDAFEGLTRFGEFQKSLGLAKNILAARLRNLVEHG 65 (146)
T ss_dssp SSHHHHHHHHHTTCCSHHHHHHHHCCCHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 345667654 44458999999999999999999999876543
No 88
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=79.52 E-value=1.1 Score=33.88 Aligned_cols=43 Identities=12% Similarity=0.220 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHhc--CCCcccchhhhhcccchHHHHHHHhhhhcC
Q psy10745 137 DVVRQRIVELAHN--GVRPCDISRQLRVSHGCVSKILSRESNLHN 179 (197)
Q Consensus 137 ~~~r~~iv~l~~~--g~r~~~isr~l~vshgcVskil~ry~~~~n 179 (197)
+..+.+|+++.+. .+...+||+.+++|...|++.|.+..+.+=
T Consensus 6 d~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~ 50 (151)
T 2cyy_A 6 DEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGV 50 (151)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 4567789887654 366789999999999999999998877653
No 89
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=79.50 E-value=1.2 Score=33.54 Aligned_cols=42 Identities=14% Similarity=0.267 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHhc--CCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 137 DVVRQRIVELAHN--GVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 137 ~~~r~~iv~l~~~--g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
+....+|+++.+. .+...+||+.+++|...|++.|.+..+.+
T Consensus 4 d~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 47 (144)
T 2cfx_A 4 DQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFG 47 (144)
T ss_dssp CHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4566788887654 46778999999999999999999886655
No 90
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=79.47 E-value=0.6 Score=35.48 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=30.7
Q ss_pred ccccCCCCCChHHHHHHHHHHh-----c---CCCcccchhhhhcccchHH
Q psy10745 127 GVFVNGRPLPDVVRQRIVELAH-----N---GVRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 127 ~~~~ngrplp~~~r~~iv~l~~-----~---g~r~~~isr~l~vshgcVs 168 (197)
|+.++|++-....|++|++-|. + ++.-.|||+..+||.|.+-
T Consensus 1 ~~~~~~~~r~~~~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvsk~tlY 50 (211)
T 3bhq_A 1 GMKIDGETRSARKDREIIQAATAAFISKGYDGTSMEEIATKAGASKQTVY 50 (211)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHH
T ss_pred CCCcccCCccHhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHH
Confidence 5678889988999999998553 3 5788999999999999874
No 91
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=78.98 E-value=0.58 Score=38.27 Aligned_cols=44 Identities=25% Similarity=0.233 Sum_probs=35.9
Q ss_pred CChHHHHHHHHHH-hcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELA-HNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|.+..|.+|+.+. +..+..++||+.+++|.+.||+.|.+-.+.+
T Consensus 12 L~~~~rl~IL~~L~~~~~s~~eLa~~l~is~stvs~hLk~Le~~G 56 (202)
T 2p4w_A 12 LGNETRRRILFLLTKRPYFVSELSRELGVGQKAVLEHLRILEEAG 56 (202)
T ss_dssp HHSHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3457888998764 5667889999999999999999998876544
No 92
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=78.92 E-value=0.6 Score=37.98 Aligned_cols=32 Identities=34% Similarity=0.560 Sum_probs=28.9
Q ss_pred CChHHHHHHHHHHhcCCCcccchhhhhcccch
Q psy10745 135 LPDVVRQRIVELAHNGVRPCDISRQLRVSHGC 166 (197)
Q Consensus 135 lp~~~r~~iv~l~~~g~r~~~isr~l~vshgc 166 (197)
=++++-..|++||++|+.|++|--.|+=+||=
T Consensus 29 ~~eeVe~~I~klakkG~tpSqIG~iLRD~~GI 60 (151)
T 3u5c_N 29 SSESVIEQIVKYARKGLTPSQIGVLLRDAHGV 60 (151)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHCCCCHHHhhhHHhccCCC
Confidence 35789999999999999999999999988873
No 93
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=78.86 E-value=1.2 Score=32.69 Aligned_cols=36 Identities=25% Similarity=0.293 Sum_probs=30.1
Q ss_pred HHHHHH--hcCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 142 RIVELA--HNGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 142 ~iv~l~--~~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
.|+.+. ..++...+||+.|+||.+.||++|.+-.+.
T Consensus 12 ~i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~ 49 (142)
T 1on2_A 12 QIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKD 49 (142)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 455553 468999999999999999999999998664
No 94
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=78.85 E-value=1.2 Score=33.60 Aligned_cols=42 Identities=14% Similarity=0.179 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHhc--CCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 137 DVVRQRIVELAHN--GVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 137 ~~~r~~iv~l~~~--g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
+....+|+++.+. .+...+||+++++|...|++.|.+..+.+
T Consensus 7 d~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 50 (152)
T 2cg4_A 7 DNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAG 50 (152)
T ss_dssp CHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 4567789987654 36678999999999999999998876654
No 95
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=78.54 E-value=1.4 Score=31.74 Aligned_cols=34 Identities=3% Similarity=0.090 Sum_probs=29.1
Q ss_pred HHHhcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 145 ELAHNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 145 ~l~~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
.|+..++...+||+.++||.+.||++|.+-.+.+
T Consensus 45 ~l~~~~~~~~ela~~l~~s~~tvs~~l~~Le~~g 78 (146)
T 2gxg_A 45 ATSDGPKTMAYLANRYFVTQSAITASVDKLEEMG 78 (146)
T ss_dssp HHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred HHhcCCcCHHHHHHHhCCCchhHHHHHHHHHHCC
Confidence 3446788999999999999999999999987654
No 96
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=78.42 E-value=1.1 Score=33.07 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHhc--CCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 137 DVVRQRIVELAHN--GVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 137 ~~~r~~iv~l~~~--g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
++...+|+++.+. .+...+||+++++|...|++.|.+-.+.+
T Consensus 3 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G 46 (141)
T 1i1g_A 3 DERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKG 46 (141)
T ss_dssp CSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3566788886643 47788999999999999999998877654
No 97
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=78.15 E-value=0.64 Score=33.45 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=27.8
Q ss_pred HhcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 147 AHNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 147 ~~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
+..++...|||+.+++|.+.||++|.+-.+.+
T Consensus 38 ~~~~~t~~ela~~l~~~~stvs~~l~~L~~~G 69 (152)
T 1ku9_A 38 SDKPLTISDIMEELKISKGNVSMSLKKLEELG 69 (152)
T ss_dssp CSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 45678899999999999999999999986654
No 98
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=78.04 E-value=2.6 Score=30.53 Aligned_cols=46 Identities=11% Similarity=0.129 Sum_probs=31.7
Q ss_pred CCCChHHHHHHHHHHh-cCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 133 RPLPDVVRQRIVELAH-NGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 133 rplp~~~r~~iv~l~~-~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
-.|+...-.=+..|+. .++.+.+||+.++||.+.||++|.+-.+.+
T Consensus 33 ~~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~G 79 (142)
T 3ech_A 33 LDLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRN 79 (142)
T ss_dssp CCCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 3455555444455554 578999999999999999999999886654
No 99
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=77.42 E-value=0.63 Score=31.83 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=18.8
Q ss_pred cccchhhhhcccchHHHHHHH
Q psy10745 153 PCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 153 ~~~isr~l~vshgcVskil~r 173 (197)
.-|||+.++||-..||++|+-
T Consensus 3 ~~diA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 458999999999999999974
No 100
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=77.27 E-value=0.3 Score=36.48 Aligned_cols=48 Identities=21% Similarity=0.161 Sum_probs=42.5
Q ss_pred ceeeeccCcccCCCCCCCCcCCHHHHHHHHHHHHhCCCcchHHhHHHH
Q psy10745 14 RYYETGSFKAGVIGGSKPKVATAPVVDAIASYKRENPTMFAWEIRDRL 61 (197)
Q Consensus 14 Ry~ETGSIrPG~IGGSKpk~~tp~v~~~I~~~k~e~P~iFaWEIRdrL 61 (197)
...++|.|.|-.-+..-.+.+..++++.|.++-++++.|++.|+||.|
T Consensus 43 ~l~~~G~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~it~ae~Rd~l 90 (121)
T 2pjp_A 43 QAAQQGIITAIVKDRYYRNDRIVEFANMIRDLDQECGSTCAADFRDRL 90 (121)
T ss_dssp HHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSSEEHHHHHHHH
T ss_pred HHHHCCCEEEecCCceECHHHHHHHHHHHHHHHHHCCCccHHHHHHHH
Confidence 456889999988777777888888999999999999999999999999
No 101
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=77.01 E-value=0.44 Score=34.56 Aligned_cols=50 Identities=16% Similarity=0.292 Sum_probs=33.8
Q ss_pred ccCCCCCChHHHHHHHHHHhcC-CCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 129 FVNGRPLPDVVRQRIVELAHNG-VRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 129 ~~ngrplp~~~r~~iv~l~~~g-~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
++|++-.-.-++.-|..|-..+ ..--+|||+|++|--.|.++|.+.++.+
T Consensus 7 ~~~~~~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG 57 (75)
T 1sfu_A 7 TVNDAEIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKED 57 (75)
T ss_dssp CCCSHHHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 4455533333334444444444 5556699999999999999999998775
No 102
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=77.00 E-value=1.6 Score=29.20 Aligned_cols=26 Identities=8% Similarity=0.259 Sum_probs=23.7
Q ss_pred hcCCCcccchhhhhcccchHHHHHHH
Q psy10745 148 HNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 148 ~~g~r~~~isr~l~vshgcVskil~r 173 (197)
+.|+.-.++|+.++||...||++++-
T Consensus 23 ~~gltq~~lA~~~gvs~~~is~~e~g 48 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAALFNG 48 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 67999999999999999999998764
No 103
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=76.95 E-value=2.1 Score=30.68 Aligned_cols=44 Identities=18% Similarity=0.183 Sum_probs=33.1
Q ss_pred CChHHHHHHHHHHhc---CCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELAHN---GVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~~~---g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|+...-.=+.-|+.. ++.+.+||+.++||.+-||++|.+-.+.+
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~G 78 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKK 78 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCC
Confidence 444444444455555 58999999999999999999999987654
No 104
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=76.94 E-value=1.5 Score=32.92 Aligned_cols=42 Identities=12% Similarity=0.104 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHhc--CCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 137 DVVRQRIVELAHN--GVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 137 ~~~r~~iv~l~~~--g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
+..+.+|+++... .+...+||+++++|...|++.|.+..+.+
T Consensus 6 d~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 49 (150)
T 2w25_A 6 DDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRG 49 (150)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4566788886543 47788999999999999999998877655
No 105
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=76.66 E-value=0.8 Score=37.47 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=28.6
Q ss_pred ChHHHHHHHHHHhcCCCcccchhhhhcccch
Q psy10745 136 PDVVRQRIVELAHNGVRPCDISRQLRVSHGC 166 (197)
Q Consensus 136 p~~~r~~iv~l~~~g~r~~~isr~l~vshgc 166 (197)
++++-..|++||++|+.|++|--.|+=+||=
T Consensus 30 ~eev~~~i~klakkG~~pSqIG~~LRD~~gi 60 (158)
T 3j20_Q 30 VEEIENLVVKLRKEGYSTAMIGTILRDQYGI 60 (158)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCCCHHHhhHHHhccCCC
Confidence 5789999999999999999999999988884
No 106
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=76.55 E-value=1.3 Score=36.06 Aligned_cols=37 Identities=32% Similarity=0.407 Sum_probs=31.3
Q ss_pred HHHHHHhcCCCc--ccchhhhhcccchHHHHHHHhhhhc
Q psy10745 142 RIVELAHNGVRP--CDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 142 ~iv~l~~~g~r~--~~isr~l~vshgcVskil~ry~~~~ 178 (197)
-|.+|.+.|+.+ .+||+.|+||.+.||++|.|-.+.+
T Consensus 14 ~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~G 52 (226)
T 2qq9_A 14 TIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDG 52 (226)
T ss_dssp HHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 355666678887 9999999999999999999987664
No 107
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=76.29 E-value=2.1 Score=31.29 Aligned_cols=44 Identities=11% Similarity=0.110 Sum_probs=27.4
Q ss_pred CChHHHHHHHHHHh---cCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELAH---NGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~~---~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|+...-.=+..|+. .++.+.+||+.++||++.||++|.+-.+.+
T Consensus 39 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~G 85 (148)
T 3jw4_A 39 LNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKG 85 (148)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCC
Confidence 44444444445555 589999999999999999999999876543
No 108
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=76.29 E-value=1.6 Score=33.30 Aligned_cols=42 Identities=12% Similarity=0.202 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHhc--CCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 137 DVVRQRIVELAHN--GVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 137 ~~~r~~iv~l~~~--g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
+....+|+++.+. .+...+||+.+++|...|++.|.+-.+.+
T Consensus 9 d~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 52 (162)
T 2p5v_A 9 DKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAG 52 (162)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4667789887654 36678999999999999999998876554
No 109
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=76.20 E-value=1.4 Score=32.15 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=30.0
Q ss_pred HHHHHH--hcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 142 RIVELA--HNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 142 ~iv~l~--~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
.|.+++ ..++...+||+.|+||...||++|.+-.+.+
T Consensus 21 ~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~G 59 (139)
T 2x4h_A 21 TIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKG 59 (139)
T ss_dssp HHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCC
Confidence 344454 3568899999999999999999999987764
No 110
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=76.06 E-value=1.3 Score=34.61 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=32.0
Q ss_pred ChHHHHHHHHHHhcCCCcccchhhhhcccchHHHH
Q psy10745 136 PDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKI 170 (197)
Q Consensus 136 p~~~r~~iv~l~~~g~r~~~isr~l~vshgcVski 170 (197)
....|.+|++|...|..--+||..++||-..||++
T Consensus 61 aLs~R~eV~klL~~G~syreIA~~~g~S~aTIsRv 95 (119)
T 3kor_A 61 SLSQRLQVAKMIKQGYTYATIEQESGASTATISRV 95 (119)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHH
Confidence 45678999999999999999999999999999984
No 111
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=76.01 E-value=2.5 Score=30.95 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=29.0
Q ss_pred HHhcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 146 LAHNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 146 l~~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|...++.+.+||+.++||.+-||+++.+-.+.+
T Consensus 47 l~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~G 79 (151)
T 3kp7_A 47 LSIEALTVGQITEKQGVNKAAVSRRVKKLLNAE 79 (151)
T ss_dssp HHHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTT
T ss_pred HHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 377899999999999999999999999876543
No 112
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=75.85 E-value=0.97 Score=36.83 Aligned_cols=32 Identities=38% Similarity=0.546 Sum_probs=28.9
Q ss_pred CChHHHHHHHHHHhcCCCcccchhhhhcccch
Q psy10745 135 LPDVVRQRIVELAHNGVRPCDISRQLRVSHGC 166 (197)
Q Consensus 135 lp~~~r~~iv~l~~~g~r~~~isr~l~vshgc 166 (197)
-++++-..|++||++|..|++|-=.|+=+||=
T Consensus 31 ~~eeVe~~I~klakkG~tpSqIG~iLRD~~GI 62 (153)
T 2xzm_O 31 TPSTVVDLSVKLAKKGLTPSQIGVILRDQHGI 62 (153)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHSSCC
T ss_pred CHHHHHHHHHHHHHCCCCHHHhhhHHhhcCCC
Confidence 36789999999999999999999999988883
No 113
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=75.60 E-value=1.1 Score=32.13 Aligned_cols=41 Identities=12% Similarity=0.008 Sum_probs=31.4
Q ss_pred HHHHHHHHH-HhcCCCcccchhhhh-cccchHHHHHHHhhhhc
Q psy10745 138 VVRQRIVEL-AHNGVRPCDISRQLR-VSHGCVSKILSRESNLH 178 (197)
Q Consensus 138 ~~r~~iv~l-~~~g~r~~~isr~l~-vshgcVskil~ry~~~~ 178 (197)
.-+..|+.+ .+.+++..||++.+. ||.+.||+.|.+-.+.+
T Consensus 25 ~~~~~IL~~L~~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~G 67 (107)
T 2fsw_A 25 KWTLLIIFQINRRIIRYGELKRAIPGISEKMLIDELKFLCGKG 67 (107)
T ss_dssp SSHHHHHHHHTTSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHhCCcCHHHHHHHcccCCHHHHHHHHHHHHHCC
Confidence 345566654 455689999999995 99999999999876543
No 114
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=75.44 E-value=0.5 Score=32.53 Aligned_cols=22 Identities=27% Similarity=0.301 Sum_probs=19.5
Q ss_pred CCcccchhhhhcccchHHHHHH
Q psy10745 151 VRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 151 ~r~~~isr~l~vshgcVskil~ 172 (197)
+..-|||+.++||...||++|+
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 5678999999999999999885
No 115
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=75.11 E-value=1.8 Score=32.48 Aligned_cols=42 Identities=12% Similarity=0.241 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHhc--CCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 137 DVVRQRIVELAHN--GVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 137 ~~~r~~iv~l~~~--g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
+....+|+++.+. .+...+||+.+++|...|++.|.+-.+.+
T Consensus 8 d~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 51 (151)
T 2dbb_A 8 DRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLG 51 (151)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4566788887654 36678999999999999999999876654
No 116
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=74.78 E-value=1.3 Score=30.21 Aligned_cols=34 Identities=18% Similarity=0.500 Sum_probs=21.8
Q ss_pred ccCCCC----CChHHHHHHHHHH-hcCCCcccchhhhhc
Q psy10745 129 FVNGRP----LPDVVRQRIVELA-HNGVRPCDISRQLRV 162 (197)
Q Consensus 129 ~~ngrp----lp~~~r~~iv~l~-~~g~r~~~isr~l~v 162 (197)
++||++ +++++|.||.+.+ +.|.+|...||.|.-
T Consensus 20 vLng~~~~~~vs~et~~rI~~aa~~lgY~pn~~a~~l~~ 58 (65)
T 1uxc_A 20 VINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRL 58 (65)
T ss_dssp HHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC--------
T ss_pred HHcCCCCCCCCCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 456664 8999999999987 489999999999873
No 117
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=74.44 E-value=2.8 Score=26.81 Aligned_cols=40 Identities=20% Similarity=0.121 Sum_probs=33.1
Q ss_pred HHHHHHHHHhCCCcchHHhHHHHHhcCCCCCCCCCCccccccccc
Q psy10745 39 VDAIASYKRENPTMFAWEIRDRLLAEGICSQDNVPSVSSINRYIT 83 (197)
Q Consensus 39 ~~~I~~~k~e~P~iFaWEIRdrLl~~GvC~~~~vPSvSSI~Rilr 83 (197)
...|..+..+++.+.+-||-+.|.++|.-. |.++|+|.|.
T Consensus 7 ~~~i~~ll~~~~~~t~~el~~~l~~~~~~v-----s~~Tv~R~L~ 46 (64)
T 2p5k_A 7 HIKIREIITSNEIETQDELVDMLKQDGYKV-----TQATVSRDIK 46 (64)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCC-----CHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCc-----CHHHHHHHHH
Confidence 345666667788899999999999998755 8899999997
No 118
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=74.27 E-value=1.9 Score=30.93 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=33.1
Q ss_pred CChHHHHHHHHHHhc---CCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELAHN---GVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~~~---g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|+...-.=+..|+.. ++.+.+||+.++||.+-||+++.+-.+.+
T Consensus 29 lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~G 75 (139)
T 3eco_A 29 ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKK 75 (139)
T ss_dssp CCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCC
Confidence 444444444455554 78999999999999999999999876543
No 119
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=74.23 E-value=1.6 Score=35.46 Aligned_cols=36 Identities=33% Similarity=0.415 Sum_probs=30.7
Q ss_pred HHHHHhcCCCc--ccchhhhhcccchHHHHHHHhhhhc
Q psy10745 143 IVELAHNGVRP--CDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 143 iv~l~~~g~r~--~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|.+|.+.|+.+ .+||+.|+||.+.||++|.|-.+.+
T Consensus 15 L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~Le~~G 52 (230)
T 1fx7_A 15 IYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDG 52 (230)
T ss_dssp HHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34566679988 9999999999999999999987654
No 120
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=73.91 E-value=0.42 Score=31.71 Aligned_cols=30 Identities=13% Similarity=0.090 Sum_probs=25.1
Q ss_pred HHHHHHhcCCCcccchhhhhcccchHHHHH
Q psy10745 142 RIVELAHNGVRPCDISRQLRVSHGCVSKIL 171 (197)
Q Consensus 142 ~iv~l~~~g~r~~~isr~l~vshgcVskil 171 (197)
+|-++.+.+....++|+.|+||...||+..
T Consensus 2 ~~~~~i~~~~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 2 YKKDVIDHFGTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp BHHHHHHHHSSHHHHHHHHTCCHHHHHHCC
T ss_pred CHHHHHHHcCCHHHHHHHhCCCHHHHHHHH
Confidence 345666777788999999999999999975
No 121
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=73.28 E-value=2.8 Score=30.37 Aligned_cols=44 Identities=16% Similarity=0.105 Sum_probs=33.9
Q ss_pred CCChHHHHHHHHHHhc-CCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 134 PLPDVVRQRIVELAHN-GVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 134 plp~~~r~~iv~l~~~-g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
.|+...-.=+..|+.. ++.+.+||+.++||.+.||++|.+-.+.
T Consensus 37 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 4665555545555544 6889999999999999999999998665
No 122
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=73.21 E-value=1.7 Score=32.12 Aligned_cols=35 Identities=17% Similarity=0.387 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHH
Q psy10745 137 DVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 137 ~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ 172 (197)
+..+.++-++.+ |++-.++|++.+||.+.+|.|.+
T Consensus 20 ~~~~~kLK~il~-GikQ~eLAK~iGIsqsTLSaIen 54 (83)
T 2l1p_A 20 TTVRNALKDLLK-DMNQSSLAKECPLSQSMISSIVN 54 (83)
T ss_dssp HHHHHHHHHHHT-TSCHHHHHHHSSSCHHHHHHHHT
T ss_pred HHHHHHHHHHHH-hcCHHHHHHHcCCCHHHHHHHHc
Confidence 467788888888 99999999999999999999875
No 123
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=72.91 E-value=2.8 Score=32.55 Aligned_cols=44 Identities=11% Similarity=0.181 Sum_probs=35.2
Q ss_pred CChHHHHHHHHHH---hcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELA---HNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~---~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|+...-.=+.-|+ ..++.+.+||+.++||.+.||++|.+-.+.+
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~G 85 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNG 85 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 6655555555666 4579999999999999999999999876543
No 124
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=72.78 E-value=2.2 Score=33.47 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=34.7
Q ss_pred ChHHHHHHHHHHhcC--CCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 136 PDVVRQRIVELAHNG--VRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 136 p~~~r~~iv~l~~~g--~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
.+....+|+++.+.+ +...+||+++++|...|++.|.|-.+.+
T Consensus 15 ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G 59 (171)
T 2ia0_A 15 LDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERG 59 (171)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 456677888876543 6677999999999999999999886655
No 125
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=72.51 E-value=1.5 Score=32.12 Aligned_cols=44 Identities=9% Similarity=0.199 Sum_probs=35.4
Q ss_pred HHHHHHHh--cCCCcccchhhhhcccchHHHHHHHhhhhcCccccc
Q psy10745 141 QRIVELAH--NGVRPCDISRQLRVSHGCVSKILSRESNLHNYRLVR 184 (197)
Q Consensus 141 ~~iv~l~~--~g~r~~~isr~l~vshgcVskil~ry~~~~n~~~~~ 184 (197)
++|+++.+ .-+...|||++|+||-..|...|.+..+.+=-.-++
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 46676643 458889999999999999999999999988555443
No 126
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=72.16 E-value=3.2 Score=29.51 Aligned_cols=44 Identities=16% Similarity=0.345 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHHh-cCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELAH-NGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~~-~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|+...-.=+..|+. .++.+.|||+.+++|.+-||++|.+-.+.+
T Consensus 27 l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~g 71 (138)
T 3bpv_A 27 LTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESG 71 (138)
T ss_dssp CCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 44333333333443 568999999999999999999999986653
No 127
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=71.93 E-value=2.1 Score=35.76 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=35.3
Q ss_pred CCChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 134 PLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 134 plp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
.|+ ..-.+|+.|...|....+||+.|+||...|.+-|.+-++.
T Consensus 197 ~Lt-~re~~vl~~~~~G~s~~eIA~~l~is~~TV~~~~~~~~~k 239 (265)
T 3qp6_A 197 PLS-QREYDIFHWMSRGKTNWEIATILNISERTVKFHVANVIRK 239 (265)
T ss_dssp CCC-HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 465 4456788889999999999999999999999877665543
No 128
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=71.90 E-value=2.3 Score=31.05 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHHh-cCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELAH-NGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~~-~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|+...-.=+..|+. .++.+.+||+.+++|.+.||++|.+-.+.+
T Consensus 39 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~G 83 (154)
T 2qww_A 39 LTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLG 83 (154)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 44433333344444 458899999999999999999999876543
No 129
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=71.68 E-value=1.8 Score=32.34 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=27.2
Q ss_pred cCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 149 NGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 149 ~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
.++.+.+||+.|+||.+.||+.|.+-.+.+
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~G 82 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMG 82 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCC
Confidence 568899999999999999999999987774
No 130
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=71.49 E-value=2.2 Score=32.75 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHH
Q psy10745 137 DVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 137 ~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ 172 (197)
+..|.+|+.|...|..-.+|++.+++|...||.+-.
T Consensus 45 laqR~~Ia~lL~~G~SyreIa~~tG~StaTIsRv~r 80 (107)
T 3frw_A 45 LSQRFEVAKMLTDKRTYLDISEKTGASTATISRVNR 80 (107)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCccHHHHHHHHH
Confidence 567999999999999999999999999999988643
No 131
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=71.44 E-value=2.7 Score=28.47 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHh----cCCCcccchhhh-----hcccchHHHHHHHhhhhcC
Q psy10745 137 DVVRQRIVELAH----NGVRPCDISRQL-----RVSHGCVSKILSRESNLHN 179 (197)
Q Consensus 137 ~~~r~~iv~l~~----~g~r~~~isr~l-----~vshgcVskil~ry~~~~n 179 (197)
...|..|+++.. .++...||++.+ .||...|...|....+.+=
T Consensus 16 t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 16 TLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp CHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 367889999874 357889999999 8999999999999877663
No 132
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=71.31 E-value=2 Score=30.95 Aligned_cols=35 Identities=14% Similarity=0.313 Sum_probs=28.4
Q ss_pred HHHHHh-cCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 143 IVELAH-NGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 143 iv~l~~-~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
+..|+. .++.+.+||+.+++|.+.||++|.+-.+.
T Consensus 35 L~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~ 70 (144)
T 1lj9_A 35 LVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQ 70 (144)
T ss_dssp HHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHC
Confidence 334444 45889999999999999999999997665
No 133
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=71.01 E-value=3.5 Score=29.38 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHHh-cCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELAH-NGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~~-~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|+...-.=+..|+. .++.+.+||+.+++|.+-||++|.+-.+.+
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~g 76 (138)
T 1jgs_A 32 ITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKG 76 (138)
T ss_dssp SCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHHCC
Confidence 55444444444554 578999999999999999999999987654
No 134
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=70.92 E-value=2.8 Score=29.76 Aligned_cols=44 Identities=14% Similarity=0.087 Sum_probs=31.6
Q ss_pred CChHHHHHHHHHHh-cCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELAH-NGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~~-~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|+...-.=+..|+. .++.+.+||+.+++|.+.||++|.+-.+.+
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~g 75 (139)
T 3bja_A 31 ISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDG 75 (139)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCC
Confidence 44333333333443 457899999999999999999999986653
No 135
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=70.77 E-value=3.2 Score=29.52 Aligned_cols=45 Identities=11% Similarity=0.136 Sum_probs=32.4
Q ss_pred CCChHHHHHHHHHH-hcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 134 PLPDVVRQRIVELA-HNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 134 plp~~~r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
.|+...-.=+..|+ +.++...+||+.++||.+.||++|.+-.+.+
T Consensus 35 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~g 80 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKRG 80 (140)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 34543333333343 3578999999999999999999999876653
No 136
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=70.71 E-value=1.4 Score=27.58 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=24.0
Q ss_pred HhcCCCcccchhhhhcccchHHHHHHH
Q psy10745 147 AHNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 147 ~~~g~r~~~isr~l~vshgcVskil~r 173 (197)
.+.|+...++|+.++||..-||++.+-
T Consensus 11 ~~~g~s~~~lA~~~gis~~~i~~~e~g 37 (66)
T 2xi8_A 11 EKKKISQSELAALLEVSRQTINGIEKN 37 (66)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 467999999999999999999998763
No 137
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=70.70 E-value=4.8 Score=29.92 Aligned_cols=44 Identities=11% Similarity=0.025 Sum_probs=32.4
Q ss_pred CChHHHHHHHHHHh-cCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELAH-NGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~~-~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|+...-.=+.-|+. .++.+.+||+.++||.+.||++|.|-.+.+
T Consensus 44 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~G 88 (162)
T 3k0l_A 44 ISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANG 88 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCc
Confidence 44444333334444 578999999999999999999999976543
No 138
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=70.65 E-value=2 Score=32.82 Aligned_cols=44 Identities=18% Similarity=0.186 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHHhcC----CCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELAHNG----VRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~~~g----~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|+...-.=+.-|+..| +.+.+||+.++||.+.||++|.|-.+.+
T Consensus 67 lt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~G 114 (181)
T 2fbk_A 67 LNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKG 114 (181)
T ss_dssp CCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCc
Confidence 3433333334445444 8999999999999999999999876654
No 139
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=70.07 E-value=2.4 Score=29.65 Aligned_cols=28 Identities=18% Similarity=0.142 Sum_probs=25.4
Q ss_pred CCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 151 VRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 151 ~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
+.+.+||+.++++.+.||++|.+-.+.+
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~~G 58 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEEAK 58 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCc
Confidence 8899999999999999999999986654
No 140
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=69.78 E-value=3.2 Score=29.73 Aligned_cols=31 Identities=6% Similarity=0.165 Sum_probs=27.5
Q ss_pred hcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 148 HNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 148 ~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
..++.+.+||+.+++|.+.||++|.+-.+.+
T Consensus 50 ~~~~t~~~la~~l~~s~~~vs~~l~~L~~~g 80 (146)
T 2fbh_A 50 RDSPTQRELAQSVGVEGPTLARLLDGLESQG 80 (146)
T ss_dssp SSCCBHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHCC
Confidence 5678999999999999999999999886653
No 141
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=69.76 E-value=4.1 Score=29.48 Aligned_cols=45 Identities=9% Similarity=0.133 Sum_probs=33.2
Q ss_pred CCChHHHHHHHHHHh-cCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 134 PLPDVVRQRIVELAH-NGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 134 plp~~~r~~iv~l~~-~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
.|+...-.=+..|+. .++.+.+||+.++||.+.||++|.+-.+.+
T Consensus 39 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~G 84 (150)
T 2rdp_A 39 PITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERNG 84 (150)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCC
Confidence 455444333334443 578999999999999999999999986653
No 142
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=69.00 E-value=3 Score=29.76 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=32.3
Q ss_pred CChHHHHHHHHHHh-cCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELAH-NGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~~-~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|+...-.=+..|+. .++.+.+||+.+++|.+.||++|.+-.+.+
T Consensus 34 lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~g 78 (142)
T 2fbi_A 34 LTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDG 78 (142)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCC
Confidence 44433333334444 578999999999999999999999986643
No 143
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=68.84 E-value=3 Score=32.73 Aligned_cols=42 Identities=12% Similarity=0.242 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHhc--CCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 137 DVVRQRIVELAHN--GVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 137 ~~~r~~iv~l~~~--g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
++...+|+++.+. .+...+||+++++|...|++.|.|..+.+
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESG 69 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 5677789987664 36677999999999999999988887665
No 144
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=68.76 E-value=1.9 Score=34.96 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=30.9
Q ss_pred HHHHHHh--cCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 142 RIVELAH--NGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 142 ~iv~l~~--~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
.|.+|.+ .+++..|||+.|+||.+.||++|.|-.+.+
T Consensus 10 ~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~G 48 (214)
T 3hrs_A 10 CLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEE 48 (214)
T ss_dssp HHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCC
Confidence 4556654 468999999999999999999999987764
No 145
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=68.71 E-value=4.3 Score=28.91 Aligned_cols=38 Identities=13% Similarity=0.221 Sum_probs=30.1
Q ss_pred HHHHH-HH-hcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 141 QRIVE-LA-HNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 141 ~~iv~-l~-~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
.+|+. |+ +.++.+.+||+.+++|.+-||++|.+-.+.+
T Consensus 34 ~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~g 73 (142)
T 3bdd_A 34 YSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESG 73 (142)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 34444 33 3578999999999999999999999987653
No 146
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=68.58 E-value=3.8 Score=29.66 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=32.2
Q ss_pred CChHHHHHHHHHH-hcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELA-HNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|+...-.=+..|+ +.++.+.+||+.+++|.+.||++|.+-.+.+
T Consensus 29 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~G 73 (145)
T 3g3z_A 29 LNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQG 73 (145)
T ss_dssp CCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 4433333333443 4569999999999999999999999986654
No 147
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=68.53 E-value=3.2 Score=31.91 Aligned_cols=42 Identities=10% Similarity=0.222 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHhcC--CCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 137 DVVRQRIVELAHNG--VRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 137 ~~~r~~iv~l~~~g--~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|+...+|+++-+.. +...+||++|++|...|++-|.|..+.+
T Consensus 2 D~~d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 2 DRLDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp CHHHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 46678899887654 5678999999999999999988887766
No 148
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=68.13 E-value=2.9 Score=31.51 Aligned_cols=42 Identities=24% Similarity=0.406 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHh--cCCCcccchhhh--hcccchHHHHHHHhhhhc
Q psy10745 137 DVVRQRIVELAH--NGVRPCDISRQL--RVSHGCVSKILSRESNLH 178 (197)
Q Consensus 137 ~~~r~~iv~l~~--~g~r~~~isr~l--~vshgcVskil~ry~~~~ 178 (197)
+....+|+++.. .-+.+.+||+.+ ++|..-||+-|.+-.+.+
T Consensus 12 d~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~G 57 (111)
T 3b73_A 12 TIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHD 57 (111)
T ss_dssp CHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCC
Confidence 466789999874 478999999999 999999999888876554
No 149
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=68.11 E-value=3.2 Score=30.01 Aligned_cols=44 Identities=7% Similarity=0.013 Sum_probs=32.8
Q ss_pred CChHHHHHHHHHHh-cCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELAH-NGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~~-~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|+...-.=+..|+. .++.+.+||+.++||.+.||++|.+-.+.+
T Consensus 35 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~G 79 (143)
T 3oop_A 35 VTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRKE 79 (143)
T ss_dssp SCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCC
Confidence 45444433444443 678999999999999999999999876543
No 150
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=68.11 E-value=3.2 Score=30.02 Aligned_cols=43 Identities=5% Similarity=0.012 Sum_probs=32.4
Q ss_pred CChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 135 LPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 135 lp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
|+...-.=+..|+..+-.+.+||+.+++|.+.||++|.+-.+.
T Consensus 35 lt~~~~~iL~~l~~~~~~~~~la~~l~~~~~tvs~~l~~Le~~ 77 (144)
T 3f3x_A 35 LSYLDFSILKATSEEPRSMVYLANRYFVTQSAITAAVDKLEAK 77 (144)
T ss_dssp CCHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 4444444444456555599999999999999999999998665
No 151
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=68.04 E-value=5.6 Score=29.01 Aligned_cols=43 Identities=9% Similarity=0.100 Sum_probs=31.0
Q ss_pred CChHHHHHHHHHHhc--CCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 135 LPDVVRQRIVELAHN--GVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 135 lp~~~r~~iv~l~~~--g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
|+...-.=+.-|+.. ++.+.+||+.++||.+.||++|.+-.+.
T Consensus 37 lt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~ 81 (150)
T 3fm5_A 37 LRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEER 81 (150)
T ss_dssp CCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHC
Confidence 443333333334433 5799999999999999999999987654
No 152
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=67.66 E-value=3.1 Score=33.54 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=34.4
Q ss_pred ChHHHHHHHHHHhc-CCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 136 PDVVRQRIVELAHN-GVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 136 p~~~r~~iv~l~~~-g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
.+..+.+|+.+-.. .+...+||++++||.+.|++.|.+-.+.+
T Consensus 18 ~d~~~~~IL~~L~~~~~s~~eLA~~lglS~stv~~~l~~Le~~G 61 (192)
T 1uly_A 18 LEDTRRKILKLLRNKEMTISQLSEILGKTPQTIYHHIEKLKEAG 61 (192)
T ss_dssp HSHHHHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 35678889987654 46778999999999999999888875543
No 153
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=67.52 E-value=2.2 Score=31.07 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=28.5
Q ss_pred HHHHHH--HHhcCCCcccchhhhhcccchHHHHHHH
Q psy10745 140 RQRIVE--LAHNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 140 r~~iv~--l~~~g~r~~~isr~l~vshgcVskil~r 173 (197)
-.+|-+ +-+.|+...++|+.++||...||+|++-
T Consensus 15 G~~Lk~~lr~~~gltq~eLA~~lGis~~~is~ie~G 50 (104)
T 3trb_A 15 GEILAEELGFLDKMSANQLAKHLAIPTNRVTAILNG 50 (104)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 444543 6789999999999999999999999863
No 154
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=67.39 E-value=1.9 Score=27.55 Aligned_cols=27 Identities=7% Similarity=0.089 Sum_probs=24.2
Q ss_pred HhcCCCcccchhhhhcccchHHHHHHH
Q psy10745 147 AHNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 147 ~~~g~r~~~isr~l~vshgcVskil~r 173 (197)
.+.|+...++|+.++||...||++.+-
T Consensus 13 ~~~glsq~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 13 IALKMTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 468999999999999999999998764
No 155
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=67.39 E-value=0.74 Score=32.82 Aligned_cols=53 Identities=21% Similarity=0.077 Sum_probs=34.4
Q ss_pred hHHHHHHHH-HHhcCC---CcccchhhhhcccchHHHHHHHhhhhcCcccccccccc
Q psy10745 137 DVVRQRIVE-LAHNGV---RPCDISRQLRVSHGCVSKILSRESNLHNYRLVREEGCF 189 (197)
Q Consensus 137 ~~~r~~iv~-l~~~g~---r~~~isr~l~vshgcVskil~ry~~~~n~~~~~~~~~~ 189 (197)
+++|.+|++ ....|- .-.+||++++||...|++.|.+-.+.+=-....-.|.|
T Consensus 18 ~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~~g~G~~ 74 (102)
T 1v4r_A 18 THFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGALGTV 74 (102)
T ss_dssp HHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETTTEEE
T ss_pred HHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCeEE
Confidence 445555554 333344 34589999999999999999887766543333333444
No 156
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=67.27 E-value=4.5 Score=29.74 Aligned_cols=43 Identities=19% Similarity=0.157 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHH-hcCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 135 LPDVVRQRIVELA-HNGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 135 lp~~~r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
|+...-.=+..|+ ..++.+.+||+.++||.+.||++|.+-.+.
T Consensus 47 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~ 90 (162)
T 2fa5_A 47 MAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLER 90 (162)
T ss_dssp CCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 4444333333444 357899999999999999999999987665
No 157
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=67.05 E-value=3.1 Score=31.15 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=29.7
Q ss_pred CChHHHHHHHHHHh---cCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELAH---NGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~~---~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|....-.=+.-|+. .++.+.+||+.++||.+.||++|.+-.+.+
T Consensus 44 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~G 90 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRG 90 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCC
Confidence 44444333444454 389999999999999999999999976543
No 158
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=66.81 E-value=1.9 Score=27.29 Aligned_cols=27 Identities=4% Similarity=0.289 Sum_probs=24.2
Q ss_pred HhcCCCcccchhhhhcccchHHHHHHH
Q psy10745 147 AHNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 147 ~~~g~r~~~isr~l~vshgcVskil~r 173 (197)
.+.|+...++|+.++||..-||++.+-
T Consensus 11 ~~~glsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 11 IQLGLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 468999999999999999999998764
No 159
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=66.52 E-value=5.1 Score=27.34 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=20.8
Q ss_pred ccCCC-CCChHHHHHHHHHH-hcCCCcccchhhhh
Q psy10745 129 FVNGR-PLPDVVRQRIVELA-HNGVRPCDISRQLR 161 (197)
Q Consensus 129 ~~ngr-plp~~~r~~iv~l~-~~g~r~~~isr~l~ 161 (197)
++||+ .++++.|.+|.+.+ +.|.+|...|+.|.
T Consensus 29 ~ln~~~~vs~~t~~rV~~~a~~lgY~pn~~a~~l~ 63 (67)
T 2l8n_A 29 ALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVK 63 (67)
T ss_dssp TTTCCCCSCHHHHHHHHHHHHHHCCCC--------
T ss_pred HHcCCCCCCHHHHHHHHHHHHHhCCCccHHHHHhh
Confidence 55665 68999999999987 58999999999876
No 160
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=66.51 E-value=2.1 Score=27.62 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=23.2
Q ss_pred HHhcCCCcccchhhhhcccchHHHHHH
Q psy10745 146 LAHNGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 146 l~~~g~r~~~isr~l~vshgcVskil~ 172 (197)
+.+.| ...++|+.|+||...||+++.
T Consensus 10 ~~~~g-s~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 10 LEEHG-TQSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp HHHTC-CHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHcC-CHHHHHHHHCcCHHHHHHHHc
Confidence 46778 999999999999999999983
No 161
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=66.45 E-value=3.4 Score=29.25 Aligned_cols=43 Identities=12% Similarity=0.234 Sum_probs=34.8
Q ss_pred HHHHHHH--hcCCCcccchhhhhcccchHHHHHHHhhhhcCcccc
Q psy10745 141 QRIVELA--HNGVRPCDISRQLRVSHGCVSKILSRESNLHNYRLV 183 (197)
Q Consensus 141 ~~iv~l~--~~g~r~~~isr~l~vshgcVskil~ry~~~~n~~~~ 183 (197)
++|+++. +..+...|||++|+||...|...|.+..+.+=-.-+
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 4677764 345889999999999999999999999988844434
No 162
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=66.24 E-value=4 Score=29.40 Aligned_cols=31 Identities=13% Similarity=0.205 Sum_probs=27.2
Q ss_pred hcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 148 HNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 148 ~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
..++.+.+||+.++||.+-||++|.+-.+.+
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~g 78 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERGG 78 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHCC
Confidence 3588999999999999999999999886653
No 163
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=66.19 E-value=3.6 Score=29.82 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=32.2
Q ss_pred CChHHHHHHHHHHh-cCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELAH-NGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~~-~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|+...-.=+..|+. .++.+.+||+.++||.+.||++|.+-.+.+
T Consensus 38 lt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~G 82 (152)
T 3bj6_A 38 VTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAG 82 (152)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 44333333334443 468899999999999999999999987654
No 164
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=64.82 E-value=2 Score=27.09 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=23.8
Q ss_pred HhcCCCcccchhhhhcccchHHHHHHH
Q psy10745 147 AHNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 147 ~~~g~r~~~isr~l~vshgcVskil~r 173 (197)
.+.|+...++|+.++||...||++.+-
T Consensus 15 ~~~g~s~~~lA~~~gis~~~i~~~e~g 41 (68)
T 2r1j_L 15 KKLKIRQAALGKMVGVSNVAISQWERS 41 (68)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 367999999999999999999998763
No 165
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=64.67 E-value=4 Score=30.08 Aligned_cols=44 Identities=14% Similarity=0.096 Sum_probs=32.4
Q ss_pred CChHHHHHHHHHHh-cCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELAH-NGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~~-~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|+...-.=+..|+. .++...+||+.++||.+.||++|.+-.+.+
T Consensus 50 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~G 94 (162)
T 3cjn_A 50 LSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADG 94 (162)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHCC
Confidence 55443333334443 468899999999999999999999987654
No 166
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=64.21 E-value=4.6 Score=34.26 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=34.1
Q ss_pred HHHHHHHH-hcCCCcccchhhhhcccchHHHHHHHhhhhcCc
Q psy10745 140 RQRIVELA-HNGVRPCDISRQLRVSHGCVSKILSRESNLHNY 180 (197)
Q Consensus 140 r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~ry~~~~n~ 180 (197)
-.+|..|+ +.++.-.|||++|+||.-.||+.|.+-.+.+=-
T Consensus 10 ~~~ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v 51 (315)
T 2w48_A 10 IVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIV 51 (315)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcE
Confidence 35677775 678999999999999999999999988776543
No 167
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=63.83 E-value=5 Score=28.79 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=31.2
Q ss_pred CChHHHHHHHHHHh-cCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 135 LPDVVRQRIVELAH-NGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 135 lp~~~r~~iv~l~~-~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
|+...-.=+..|+. .++...+||+.+++|.+.||++|.+-.+.
T Consensus 35 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~ 78 (142)
T 2bv6_A 35 LTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQV 78 (142)
T ss_dssp CCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 44433333334443 45788999999999999999999988665
No 168
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=63.80 E-value=2.4 Score=27.22 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=26.5
Q ss_pred HHHHHHH-hcCCCcccchhhhhcccchHHHHHHH
Q psy10745 141 QRIVELA-HNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 141 ~~iv~l~-~~g~r~~~isr~l~vshgcVskil~r 173 (197)
.+|-++. +.|+...++|+.++||...||++.+-
T Consensus 16 ~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g 49 (74)
T 1y7y_A 16 QRLRELRTAKGLSQETLAFLSGLDRSYVGGVERG 49 (74)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 3444443 67999999999999999999998753
No 169
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=63.64 E-value=2.2 Score=28.99 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=28.7
Q ss_pred HHHHHHHHH-HhcCCCcccchhhhhcccchHHHHHHH
Q psy10745 138 VVRQRIVEL-AHNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 138 ~~r~~iv~l-~~~g~r~~~isr~l~vshgcVskil~r 173 (197)
....+|-++ .+.|+...++|+.++||..-||++++-
T Consensus 18 ~~~~~l~~~r~~~glsq~elA~~~gis~~~is~~e~g 54 (83)
T 2a6c_A 18 QLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRG 54 (83)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 344455554 467999999999999999999999864
No 170
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=63.63 E-value=6.2 Score=28.24 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHH-hcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELA-HNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|+...-.=+.-|+ ..++.+.+||+.++||.+.||++|.+-.+.+
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~g 75 (145)
T 2a61_A 31 ITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADG 75 (145)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCC
Confidence 4433333333343 3578999999999999999999999886653
No 171
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=63.62 E-value=2.2 Score=27.77 Aligned_cols=35 Identities=11% Similarity=0.264 Sum_probs=28.0
Q ss_pred HHHHHHHHH-hcCCCcccchhhhhcccchHHHHHHH
Q psy10745 139 VRQRIVELA-HNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 139 ~r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~r 173 (197)
...+|-++. +.|+...++|+.++||...||++.+-
T Consensus 8 ~~~~l~~~r~~~g~sq~~lA~~~gis~~~i~~~e~g 43 (78)
T 3b7h_A 8 VSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEG 43 (78)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 344555544 67999999999999999999998864
No 172
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=63.58 E-value=2.1 Score=27.94 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=23.7
Q ss_pred HhcCCCcccchhhhhcccchHHHHHH
Q psy10745 147 AHNGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 147 ~~~g~r~~~isr~l~vshgcVskil~ 172 (197)
.+.|+...++|+.++||...||++.+
T Consensus 18 ~~~glsq~~lA~~~gis~~~is~~e~ 43 (73)
T 3omt_A 18 AEKGKTNLWLTETLDKNKTTVSKWCT 43 (73)
T ss_dssp HHHTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 46899999999999999999999875
No 173
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=63.45 E-value=2.6 Score=29.03 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=23.3
Q ss_pred HHHHHhcCCCcccchhhhhcccchHHHHHH
Q psy10745 143 IVELAHNGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 143 iv~l~~~g~r~~~isr~l~vshgcVskil~ 172 (197)
|-++...+ .-.++|+.|+||...|||.+.
T Consensus 7 Lk~l~~~~-sq~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 7 LKKFVEDK-NQEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp HHHHHTTS-CHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHc-CHHHHHHHhCCCHHHHHHHHH
Confidence 33445555 888999999999999999884
No 174
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=62.99 E-value=2.5 Score=27.35 Aligned_cols=27 Identities=19% Similarity=0.112 Sum_probs=24.0
Q ss_pred HhcCCCcccchhhhhcccchHHHHHHH
Q psy10745 147 AHNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 147 ~~~g~r~~~isr~l~vshgcVskil~r 173 (197)
.+.|+...++|+.++||...||++++-
T Consensus 20 ~~~g~s~~~lA~~~gis~~~i~~~e~g 46 (76)
T 3bs3_A 20 AEKQRTNRWLAEQMGKSENTISRWCSN 46 (76)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 467999999999999999999998763
No 175
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=62.82 E-value=2.1 Score=32.38 Aligned_cols=41 Identities=17% Similarity=0.087 Sum_probs=31.9
Q ss_pred hHHHHHHHHH-HhcCCCcccchhhh-hcccchHHHHHHHhhhh
Q psy10745 137 DVVRQRIVEL-AHNGVRPCDISRQL-RVSHGCVSKILSRESNL 177 (197)
Q Consensus 137 ~~~r~~iv~l-~~~g~r~~~isr~l-~vshgcVskil~ry~~~ 177 (197)
..-+..|+.+ .+.+++..+|++.+ +||.+-||+.|.+-.+.
T Consensus 34 ~~w~l~IL~~L~~g~~~~~eLa~~l~gis~~tls~~L~~Le~~ 76 (131)
T 1yyv_A 34 SRWGVLILVALRDGTHRFSDLRRXMGGVSEXMLAQSLQALEQD 76 (131)
T ss_dssp SHHHHHHHHHGGGCCEEHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHcCCCCHHHHHHHhccCCHHHHHHHHHHHHHC
Confidence 3456667654 44558999999999 79999999999887554
No 176
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=62.57 E-value=2.5 Score=29.07 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=25.1
Q ss_pred HHhcCCCcccchhhhhcccchHHHHHHH
Q psy10745 146 LAHNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 146 l~~~g~r~~~isr~l~vshgcVskil~r 173 (197)
+...|+...++|+.++||...||++++.
T Consensus 17 r~~~gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 17 LDELNVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp HHHHTCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4567999999999999999999999874
No 177
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=62.27 E-value=5.9 Score=29.08 Aligned_cols=45 Identities=9% Similarity=0.059 Sum_probs=33.0
Q ss_pred CCChHHHHHHHHHHh-cCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 134 PLPDVVRQRIVELAH-NGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 134 plp~~~r~~iv~l~~-~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
.|+...-.=+..|+. .++.+.+||+.++||.+.||++|.+-.+.+
T Consensus 41 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~G 86 (154)
T 2eth_A 41 DMKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRG 86 (154)
T ss_dssp HSBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 355443333344444 478999999999999999999999886653
No 178
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=62.16 E-value=5.5 Score=28.94 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcC-CC--cccchhhh-hcccchHHHHHHHhhhhc
Q psy10745 138 VVRQRIVELAHNG-VR--PCDISRQL-RVSHGCVSKILSRESNLH 178 (197)
Q Consensus 138 ~~r~~iv~l~~~g-~r--~~~isr~l-~vshgcVskil~ry~~~~ 178 (197)
..|..|+.+...| .+ .+||++.+ +||..-||+.|.+-.+.+
T Consensus 27 ~wrl~IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~G 71 (111)
T 3df8_A 27 KYTMLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSG 71 (111)
T ss_dssp TTHHHHHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCC
Confidence 3477788766566 45 79999999 999999999998875543
No 179
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=61.73 E-value=8 Score=26.23 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=31.8
Q ss_pred CCChHHHHHHHHHH-hcCCCcccchhhhhcccchHHHHHH
Q psy10745 134 PLPDVVRQRIVELA-HNGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 134 plp~~~r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~ 172 (197)
.+.+..-.+|-++. +.|+...++|+.++||..-||++.+
T Consensus 9 ~~~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~is~~e~ 48 (91)
T 1x57_A 9 RVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYES 48 (91)
T ss_dssp CCCCHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45556667776665 6799999999999999999999876
No 180
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=61.30 E-value=4.8 Score=33.73 Aligned_cols=41 Identities=7% Similarity=0.177 Sum_probs=34.7
Q ss_pred HHHHHHHHH--HhcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 138 VVRQRIVEL--AHNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 138 ~~r~~iv~l--~~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
....+|+++ .+.++...|||+.|++|...|+++|.+-.+.+
T Consensus 152 ~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le~~G 194 (244)
T 2wte_A 152 REEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELKKFG 194 (244)
T ss_dssp HHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 456778876 45689999999999999999999999987654
No 181
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=61.14 E-value=5.1 Score=29.25 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=32.3
Q ss_pred CChHHHHHHHHHHh-cCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELAH-NGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~~-~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|+...-.=+..|+. .++.+.+||+.++||.+.||++|.+-.+.+
T Consensus 45 l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~g 89 (153)
T 2pex_A 45 LTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAG 89 (153)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHCC
Confidence 55433333334443 568899999999999999999999986654
No 182
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=60.97 E-value=6 Score=28.60 Aligned_cols=44 Identities=18% Similarity=0.211 Sum_probs=34.9
Q ss_pred CCChHHHHHHHHHH-hcCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 134 PLPDVVRQRIVELA-HNGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 134 plp~~~r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
.-+...-.++|+-+ +.|+..-|||.++.++.+.|++||.|.-+-
T Consensus 19 t~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~k 63 (91)
T 2dk5_A 19 DNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESK 63 (91)
T ss_dssp CSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 34555566666654 459999999999999999999999998553
No 183
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=60.93 E-value=3.4 Score=32.78 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=34.8
Q ss_pred CCChHHHHHHHHHHh-cCCCcccchhhhh-cccchHHHHHHHhhhh
Q psy10745 134 PLPDVVRQRIVELAH-NGVRPCDISRQLR-VSHGCVSKILSRESNL 177 (197)
Q Consensus 134 plp~~~r~~iv~l~~-~g~r~~~isr~l~-vshgcVskil~ry~~~ 177 (197)
-|.+..|.+|+.+-. .....|+|+..|. +|...||+=|..-.+.
T Consensus 19 ~La~P~Rl~il~~L~~~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~a 64 (182)
T 4g6q_A 19 LLHHPLRWRITQLLIGRSLTTRELAELLPDVATTTLYRQVGILVKA 64 (182)
T ss_dssp HTTSHHHHHHHHHTTTSCEEHHHHHHHCTTBCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhCCCCHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 477899999998764 4667889999995 9999999855554443
No 184
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=60.59 E-value=3.7 Score=29.92 Aligned_cols=44 Identities=14% Similarity=-0.022 Sum_probs=32.9
Q ss_pred CChHHHHHHHHHHh---cCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELAH---NGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~~---~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|+...-.=+.-|+. .++.+.|||+.++++.+-||++|.|-.+.+
T Consensus 35 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~G 81 (127)
T 2frh_A 35 ISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQED 81 (127)
T ss_dssp CCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 44444333444554 468899999999999999999999986654
No 185
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=60.12 E-value=5.5 Score=29.12 Aligned_cols=38 Identities=5% Similarity=0.135 Sum_probs=29.8
Q ss_pred HHHHHH-Hh-cCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 141 QRIVEL-AH-NGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 141 ~~iv~l-~~-~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
..|+.. +. .++...+||+.++||.+.||++|.+-.+.+
T Consensus 46 ~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~G 85 (155)
T 3cdh_A 46 WRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARG 85 (155)
T ss_dssp HHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 344443 33 468999999999999999999999986654
No 186
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=59.29 E-value=9.7 Score=35.73 Aligned_cols=42 Identities=10% Similarity=0.194 Sum_probs=35.1
Q ss_pred CChHHHHHHHHHHh-----cCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 135 LPDVVRQRIVELAH-----NGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 135 lp~~~r~~iv~l~~-----~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
||+.. ++|+.|.- .|..-.+||.+|+||.+.|++++.|..+.
T Consensus 551 Lp~~e-r~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~k 597 (613)
T 3iyd_F 551 LTARE-AKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK 597 (613)
T ss_dssp SCHHH-HHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTT
T ss_pred CCHHH-HHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 66544 46777776 79999999999999999999999987653
No 187
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=59.27 E-value=4.7 Score=29.31 Aligned_cols=30 Identities=13% Similarity=0.294 Sum_probs=26.7
Q ss_pred cCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 149 NGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 149 ~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
.++.+.+||+.++||.+.||++|.+-.+.+
T Consensus 50 ~~~t~~ela~~l~~s~~tvs~~l~~Le~~g 79 (155)
T 1s3j_A 50 GSLKVSEIAERMEVKPSAVTLMADRLEQKN 79 (155)
T ss_dssp SEEEHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 578999999999999999999999986653
No 188
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=59.27 E-value=2.8 Score=27.01 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=23.8
Q ss_pred HhcCCCcccchhhhhcccchHHHHHHH
Q psy10745 147 AHNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 147 ~~~g~r~~~isr~l~vshgcVskil~r 173 (197)
.+.|+...++|+.++||..-||++.+-
T Consensus 15 ~~~gls~~~lA~~~gis~~~i~~~e~g 41 (76)
T 1adr_A 15 KKLKIRQAALGKMVGVSNVAISQWERS 41 (76)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 357999999999999999999998763
No 189
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=59.23 E-value=4.7 Score=35.05 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=33.8
Q ss_pred HHHHHHHHHH--hcC--CCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 138 VVRQRIVELA--HNG--VRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 138 ~~r~~iv~l~--~~g--~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
.+|++|+++- +.| +.-.+||++|+||.--|+|-+.+-.+.+
T Consensus 3 ~~~~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G 47 (323)
T 3rkx_A 3 KYSQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEG 47 (323)
T ss_dssp CHHHHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 4788999988 335 7778999999999999999888776543
No 190
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=58.68 E-value=5.7 Score=30.04 Aligned_cols=43 Identities=5% Similarity=0.152 Sum_probs=32.3
Q ss_pred CChHHHHHHHHHHh--cCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 135 LPDVVRQRIVELAH--NGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 135 lp~~~r~~iv~l~~--~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
|....-.=+..|+. .++.+.|||+.++||.+-||++|.|-.+.
T Consensus 51 lt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~ 95 (166)
T 3deu_A 51 LTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDK 95 (166)
T ss_dssp CCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHC
Confidence 55444333444554 46899999999999999999999987654
No 191
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=58.61 E-value=4.8 Score=29.88 Aligned_cols=44 Identities=9% Similarity=0.073 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHH-hcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELA-HNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|+...-.=+..|+ +.++.+.+||+.++||.+.||++|.+-.+.+
T Consensus 51 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~G 95 (161)
T 3e6m_A 51 LPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEG 95 (161)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 4443333333444 3578999999999999999999999976543
No 192
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=58.43 E-value=3 Score=27.59 Aligned_cols=26 Identities=8% Similarity=0.149 Sum_probs=23.4
Q ss_pred HhcCCCcccchhhhhcccchHHHHHH
Q psy10745 147 AHNGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 147 ~~~g~r~~~isr~l~vshgcVskil~ 172 (197)
.+.|+...++|+.++||...||++.+
T Consensus 12 ~~~glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 12 IRLSLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 36799999999999999999999875
No 193
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=58.37 E-value=5.3 Score=30.06 Aligned_cols=36 Identities=3% Similarity=0.158 Sum_probs=28.6
Q ss_pred HHHHHh--cCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 143 IVELAH--NGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 143 iv~l~~--~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
+..|+. .+..+.|||+.++|+.+.||+++.|-.+.+
T Consensus 37 L~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~G 74 (151)
T 4aik_A 37 LYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKG 74 (151)
T ss_dssp HHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCC
Confidence 444554 457778999999999999999999986543
No 194
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=58.32 E-value=5.2 Score=29.30 Aligned_cols=44 Identities=18% Similarity=0.157 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHH-hcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELA-HNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|+...-.=+..|+ +.++.+.+||+.++||.+.||++|.|-.+.+
T Consensus 39 lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~G 83 (149)
T 4hbl_A 39 ITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSG 83 (149)
T ss_dssp CCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 4433333333443 4678899999999999999999999876543
No 195
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=58.32 E-value=7.4 Score=28.66 Aligned_cols=40 Identities=8% Similarity=0.226 Sum_probs=31.3
Q ss_pred HHHHHHH-HHhc-C--CCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 139 VRQRIVE-LAHN-G--VRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 139 ~r~~iv~-l~~~-g--~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
.+.+|+. |.+. + +...+||+++++|...|++.|.+..+.+
T Consensus 27 ~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~G 70 (123)
T 3r0a_A 27 ADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKE 70 (123)
T ss_dssp HHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3445554 4543 4 6899999999999999999999987765
No 196
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=58.29 E-value=4.7 Score=29.57 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=26.6
Q ss_pred hcCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 148 HNGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 148 ~~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
..++.+.+||+.++||.+.||++|.+-.+.
T Consensus 60 ~~~~~~~ela~~l~i~~~tvs~~l~~Le~~ 89 (160)
T 3boq_A 60 PDGLSMGKLSGALKVTNGNVSGLVNRLIKD 89 (160)
T ss_dssp TTCEEHHHHHHHCSSCCSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 457899999999999999999999987654
No 197
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=58.14 E-value=7.2 Score=25.71 Aligned_cols=42 Identities=14% Similarity=0.073 Sum_probs=32.5
Q ss_pred CCChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhh
Q psy10745 134 PLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRES 175 (197)
Q Consensus 134 plp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~ 175 (197)
.+...+|.-|.+..+..-.....|+.|+||...+.+-|.+|.
T Consensus 17 ~l~~~Er~~I~~aL~~~gn~~~aA~~LGIsr~tL~rklkk~g 58 (61)
T 1g2h_A 17 IIGFYEAQVLKLFYAEYPSTRKLAQRLGVSHTAIANKLKQYG 58 (61)
T ss_dssp SCSHHHHHHHHHHHHHSCSHHHHHHHTTSCTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 466677877777554435677889999999999999888873
No 198
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=57.53 E-value=3.6 Score=26.66 Aligned_cols=33 Identities=9% Similarity=0.235 Sum_probs=26.7
Q ss_pred HHHHHHHH-hcCCCcccchhhhhcccchHHHHHH
Q psy10745 140 RQRIVELA-HNGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 140 r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~ 172 (197)
..+|-++. +.|+...++|+.++||...||++.+
T Consensus 12 ~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 12 GRTLKKIRTQKGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 34444443 6799999999999999999999875
No 199
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=57.52 E-value=5.3 Score=28.76 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=32.3
Q ss_pred CChHHHHHHHHHHh-cCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELAH-NGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~~-~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|+...-.=+..|+. .++.+.+||+.++||.+.||++|.+-.+.+
T Consensus 38 l~~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~g 82 (147)
T 1z91_A 38 ITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQG 82 (147)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCC
Confidence 55443333334443 468899999999999999999999987653
No 200
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=57.12 E-value=4 Score=27.20 Aligned_cols=35 Identities=9% Similarity=0.303 Sum_probs=27.8
Q ss_pred HHHHHHHHH-hcCCCcccchhhhhcccchHHHHHHH
Q psy10745 139 VRQRIVELA-HNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 139 ~r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~r 173 (197)
.-.+|-++. ..|+...++|+.++||...||++.+-
T Consensus 13 ~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 13 LANAMKLVRQQNGWTQSELAKKIGIKQATISNFENN 48 (88)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 334444443 67999999999999999999998874
No 201
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=56.11 E-value=3.4 Score=28.99 Aligned_cols=27 Identities=11% Similarity=0.281 Sum_probs=24.3
Q ss_pred HhcCCCcccchhhhhcccchHHHHHHH
Q psy10745 147 AHNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 147 ~~~g~r~~~isr~l~vshgcVskil~r 173 (197)
...|+...++|+.++||...||++++-
T Consensus 28 ~~~gltq~~lA~~~gis~~~is~~e~g 54 (104)
T 3cec_A 28 DDLDINTANFAEILGVSNQTIQEVING 54 (104)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 467999999999999999999998864
No 202
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=56.07 E-value=8 Score=29.03 Aligned_cols=44 Identities=11% Similarity=0.161 Sum_probs=32.4
Q ss_pred CChHHHHHHHHHHh-cCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELAH-NGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~~-~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|....-.=+..|+. .++.+.+||+.++||.+.||++|.+-.+.+
T Consensus 43 lt~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~G 87 (168)
T 2nyx_A 43 ITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGAE 87 (168)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 44443333334443 578999999999999999999999876653
No 203
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=55.48 E-value=2.8 Score=31.32 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=25.5
Q ss_pred CCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 150 GVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 150 g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
++.+.+||+.++|+.+.||+++.|-.+.+
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~v~~Le~~G 79 (147)
T 4b8x_A 51 ELPMSKIGERLMVHPTSVTNTVDRLVRSG 79 (147)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 48899999999999999999999976543
No 204
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=55.46 E-value=2.3 Score=30.90 Aligned_cols=31 Identities=6% Similarity=0.197 Sum_probs=26.6
Q ss_pred hcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 148 HNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 148 ~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
+.++.+.|||+.++||.+.||+++.+-.+.+
T Consensus 48 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~G 78 (140)
T 3hsr_A 48 DEKLNIKKLGERVFLDSGTLTPLLKKLEKKD 78 (140)
T ss_dssp TCEEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCC
Confidence 4567889999999999999999999876543
No 205
>2zko_A NS1, NS1A, non-structural protein 1; dsRNA, protein-RNA interaction; 1.70A {Influenza a virus} PDB: 2z0a_A 1ns1_A 1ail_A 3m8a_A
Probab=54.67 E-value=4.1 Score=29.17 Aligned_cols=18 Identities=22% Similarity=0.649 Sum_probs=16.9
Q ss_pred CcchHHhHHHHHhcCCCC
Q psy10745 51 TMFAWEIRDRLLAEGICS 68 (197)
Q Consensus 51 ~iFaWEIRdrLl~~GvC~ 68 (197)
++|+|-+|.+++.+++++
T Consensus 15 dcflWHvrkrfadq~lgD 32 (73)
T 2zko_A 15 DCFLWHVRKRVADQELGD 32 (73)
T ss_dssp HHHHHHHHHHHHHTTCCC
T ss_pred eehhHHHHHHhhhccccc
Confidence 489999999999999997
No 206
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=54.18 E-value=7.5 Score=25.68 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=26.8
Q ss_pred HHHHHHHH-hcCCCcccchhhhhcccchHHHHHH
Q psy10745 140 RQRIVELA-HNGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 140 r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~ 172 (197)
..+|-++. +.|+.-.++|+.++||...||++.+
T Consensus 16 ~~~l~~~R~~~gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 16 LDLLLEARSAAGITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 34454444 5899999999999999999999875
No 207
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=54.01 E-value=3.1 Score=30.80 Aligned_cols=30 Identities=13% Similarity=0.381 Sum_probs=26.3
Q ss_pred hcCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 148 HNGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 148 ~~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
+.++.+.+||+.++||.+.||+++.+-.+.
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~ 91 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLVDE 91 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 356899999999999999999999987654
No 208
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=53.95 E-value=7.5 Score=26.20 Aligned_cols=27 Identities=7% Similarity=0.243 Sum_probs=24.4
Q ss_pred HhcCCCcccchhhhhcccchHHHHHHH
Q psy10745 147 AHNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 147 ~~~g~r~~~isr~l~vshgcVskil~r 173 (197)
.+.|+...++|+.++||...||++.+-
T Consensus 27 ~~~glsq~~lA~~~gis~~~is~~e~g 53 (92)
T 1lmb_3 27 NELGLSQESVADKMGMGQSGVGALFNG 53 (92)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 577999999999999999999998864
No 209
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=53.84 E-value=16 Score=27.13 Aligned_cols=59 Identities=15% Similarity=0.097 Sum_probs=39.6
Q ss_pred CCCCCChHHHHHHHHHHhcCC-C-------cccchhhhhcccchHHHHHHHhhhhcCcccccccccc
Q psy10745 131 NGRPLPDVVRQRIVELAHNGV-R-------PCDISRQLRVSHGCVSKILSRESNLHNYRLVREEGCF 189 (197)
Q Consensus 131 ngrplp~~~r~~iv~l~~~g~-r-------~~~isr~l~vshgcVskil~ry~~~~n~~~~~~~~~~ 189 (197)
...|+...+-..|.+....|. + --++|++++||...|.+-|.+-.+.+=-....--|.|
T Consensus 8 ~~~~~~~~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~~G~~ 74 (126)
T 3ic7_A 8 ESRAIYLQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNKRGIGFF 74 (126)
T ss_dssp ----CTTHHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETTTEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEcCCccE
Confidence 456777778888887777664 2 2368999999999999999998777644444444444
No 210
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=53.80 E-value=6.1 Score=28.28 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=32.3
Q ss_pred CCChHHHHHHHH-HHhcCCCcccchhhhhcccchHHHHHHHh
Q psy10745 134 PLPDVVRQRIVE-LAHNGVRPCDISRQLRVSHGCVSKILSRE 174 (197)
Q Consensus 134 plp~~~r~~iv~-l~~~g~r~~~isr~l~vshgcVskil~ry 174 (197)
.+...++.-|.+ |.+.+-.....|+.|+||...+.+-|.+|
T Consensus 37 ~l~~~Er~~I~~aL~~~~GN~s~AA~~LGISR~TLyrKLkk~ 78 (81)
T 1umq_A 37 SADRVRWEHIQRIYEMCDRNVSETARRLNMHRRTLQRILAKR 78 (81)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHHh
Confidence 455556776766 45677788899999999999998888887
No 211
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=53.80 E-value=9.6 Score=27.35 Aligned_cols=42 Identities=17% Similarity=0.130 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 137 DVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 137 ~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
.++-..|++....|+.+.+||..+++|.+-|++.|..-.+-+
T Consensus 7 ~eIi~~IL~~i~~~~~~t~La~~~~ls~~~~~~~l~~L~~~G 48 (95)
T 1r7j_A 7 LEIIQAILEACKSGSPKTRIMYGANLSYALTGRYIKMLMDLE 48 (95)
T ss_dssp HHHHHHHHHHHTTCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHHHHCC
Confidence 355677888877789999999999999999999998775543
No 212
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=53.27 E-value=7.1 Score=29.02 Aligned_cols=38 Identities=24% Similarity=0.363 Sum_probs=28.4
Q ss_pred CCCCCChHHHHHHHHHH-----hcC---CCcccchhhhhcccchHH
Q psy10745 131 NGRPLPDVVRQRIVELA-----HNG---VRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 131 ngrplp~~~r~~iv~l~-----~~g---~r~~~isr~l~vshgcVs 168 (197)
.|||=....|++|++-| ++| +...|||+..+||.|.+=
T Consensus 5 ~~r~r~~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk~tlY 50 (192)
T 2fq4_A 5 RGRPRNIETQKAILSASYELLLESGFKAVTVDKIAERAKVSKATIY 50 (192)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHH
Confidence 47787888999999854 444 788999999999999983
No 213
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=52.16 E-value=8.8 Score=25.34 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=25.8
Q ss_pred HHHHHHH-hcCCCcccchhhhhcccchHHHHHH
Q psy10745 141 QRIVELA-HNGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 141 ~~iv~l~-~~g~r~~~isr~l~vshgcVskil~ 172 (197)
.+|-++. +.|+.-.++|+.++||...||+|.+
T Consensus 14 ~~lk~~R~~~glsq~~lA~~~gis~~~i~~~e~ 46 (82)
T 3s8q_A 14 FVIKKIRLEKGMTQEDLAYKSNLDRTYISGIER 46 (82)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 3444443 6899999999999999999999865
No 214
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=51.75 E-value=8.5 Score=26.40 Aligned_cols=33 Identities=9% Similarity=0.126 Sum_probs=26.5
Q ss_pred HHHHHHHH-hcCCCcccchhhhhcccchHHHHHH
Q psy10745 140 RQRIVELA-HNGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 140 r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~ 172 (197)
-.+|-++. ..|+...++|+.++||...||++.+
T Consensus 11 ~~~lk~~r~~~glsq~~lA~~~gis~~~is~~e~ 44 (94)
T 2kpj_A 11 SENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCK 44 (94)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 34455544 5799999999999999999999765
No 215
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=50.02 E-value=5.2 Score=26.65 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=23.0
Q ss_pred hcCCCcccchhhhhcccchHHHHHHHh
Q psy10745 148 HNGVRPCDISRQLRVSHGCVSKILSRE 174 (197)
Q Consensus 148 ~~g~r~~~isr~l~vshgcVskil~ry 174 (197)
..| ...++|+.++||...||++.+.-
T Consensus 10 ~~g-sq~~lA~~lgvs~~~is~~e~g~ 35 (79)
T 3bd1_A 10 KLG-SVSALAASLGVRQSAISNWRARG 35 (79)
T ss_dssp HHS-SHHHHHHHHTCCHHHHHHHHHHT
T ss_pred HhC-CHHHHHHHHCCCHHHHHHHHHCC
Confidence 568 99999999999999999998753
No 216
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=49.90 E-value=4 Score=29.80 Aligned_cols=43 Identities=9% Similarity=0.134 Sum_probs=33.4
Q ss_pred hHH--HHHHHHHHhcCC---CcccchhhhhcccchHHHHHHHhhhhcC
Q psy10745 137 DVV--RQRIVELAHNGV---RPCDISRQLRVSHGCVSKILSRESNLHN 179 (197)
Q Consensus 137 ~~~--r~~iv~l~~~g~---r~~~isr~l~vshgcVskil~ry~~~~n 179 (197)
+.+ +.+|++....|- .-.+||++++||...|++-|.+-.+.+=
T Consensus 25 ~~l~i~~~I~~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~Gl 72 (102)
T 2b0l_A 25 SELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGV 72 (102)
T ss_dssp HHHHHHHHHTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 445 778876655554 4567899999999999999999877763
No 217
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=49.73 E-value=6.4 Score=29.07 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=27.9
Q ss_pred CCCCChHHHHHHHHHH-----hcC---CCcccchhhhhcccchHH
Q psy10745 132 GRPLPDVVRQRIVELA-----HNG---VRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 132 grplp~~~r~~iv~l~-----~~g---~r~~~isr~l~vshgcVs 168 (197)
||| ....|.+|++-| ++| +...+||+..+||.|.+-
T Consensus 2 ~R~-~~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y 45 (195)
T 2dg7_A 2 ARW-DPGAEQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYF 45 (195)
T ss_dssp CSS-CTTHHHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHHHH
Confidence 455 457899999844 444 788999999999999874
No 218
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=49.72 E-value=11 Score=25.99 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=27.6
Q ss_pred HHHHh-cCCCcccc----hhhhhcccchHHHHHHHhhhh
Q psy10745 144 VELAH-NGVRPCDI----SRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 144 v~l~~-~g~r~~~i----sr~l~vshgcVskil~ry~~~ 177 (197)
..|+. .++...+| |+.+++|.+.||++|.+-.+.
T Consensus 15 ~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~ 53 (99)
T 1tbx_A 15 AYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQE 53 (99)
T ss_dssp HHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Confidence 33443 46889999 999999999999999988664
No 219
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=49.12 E-value=10 Score=28.77 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=33.1
Q ss_pred CCChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhh
Q psy10745 134 PLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRES 175 (197)
Q Consensus 134 plp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~ 175 (197)
.|...+ .+|++|..+|..-.+||+.|.+|...|++-+.|-+
T Consensus 154 ~Lt~rE-~~vl~~l~~g~s~~~Ia~~l~is~~TV~~hi~~i~ 194 (215)
T 1a04_A 154 QLTPRE-RDILKLIAQGLPNKMIARRLDITESTVKVHVKHML 194 (215)
T ss_dssp GSCHHH-HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHH-HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 355444 46999999999999999999999999988655543
No 220
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=48.59 E-value=6.9 Score=29.97 Aligned_cols=38 Identities=8% Similarity=0.026 Sum_probs=30.2
Q ss_pred HHHH-HHHhcCCCcccchhhh-hcccchHHHHHHHhhhhc
Q psy10745 141 QRIV-ELAHNGVRPCDISRQL-RVSHGCVSKILSRESNLH 178 (197)
Q Consensus 141 ~~iv-~l~~~g~r~~~isr~l-~vshgcVskil~ry~~~~ 178 (197)
..|+ .|+....+..||++.+ +||...+|+.|.+-.+.+
T Consensus 29 l~IL~~L~~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~G 68 (131)
T 4a5n_A 29 GILFYHMIDGKKRFNEFRRICPSITQRMLTLQLRELEADG 68 (131)
T ss_dssp HHHHHHHTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCcCHHHHHHHhcccCHHHHHHHHHHHHHCC
Confidence 3444 4556678999999999 999999999998876543
No 221
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=48.21 E-value=8.9 Score=28.00 Aligned_cols=39 Identities=26% Similarity=0.453 Sum_probs=29.4
Q ss_pred CCCCC-C-hHHHHHHHHHHh--------cCCCcccchhhhhcccchHHH
Q psy10745 131 NGRPL-P-DVVRQRIVELAH--------NGVRPCDISRQLRVSHGCVSK 169 (197)
Q Consensus 131 ngrpl-p-~~~r~~iv~l~~--------~g~r~~~isr~l~vshgcVsk 169 (197)
.|||= . ...|++|++-|. .++...+||+..+||.|.+-+
T Consensus 8 ~~r~r~~~~~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~ 56 (208)
T 3cwr_A 8 RGRPAVPDAVVRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKTLYR 56 (208)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHcCHHhccHHHHHHHhCCCHHHHHH
Confidence 35665 6 889999998653 467889999999999998753
No 222
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=48.18 E-value=9.3 Score=27.04 Aligned_cols=31 Identities=10% Similarity=0.119 Sum_probs=27.0
Q ss_pred hcCCCcccchhhhh----cccchHHHHHHHhhhhc
Q psy10745 148 HNGVRPCDISRQLR----VSHGCVSKILSRESNLH 178 (197)
Q Consensus 148 ~~g~r~~~isr~l~----vshgcVskil~ry~~~~ 178 (197)
..++...|||+.++ +|.+.||++|.|-.+.+
T Consensus 22 ~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~G 56 (123)
T 1okr_A 22 KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKG 56 (123)
T ss_dssp HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCC
Confidence 56889999999999 88999999999986654
No 223
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=48.14 E-value=6 Score=28.05 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=24.4
Q ss_pred HhcCCCcccchhhhhcccchHHHHHHH
Q psy10745 147 AHNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 147 ~~~g~r~~~isr~l~vshgcVskil~r 173 (197)
.+.|+.-.++|++++||...||+|.+-
T Consensus 34 ~~~glTq~eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 34 IDRDMKKGELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 478999999999999999999998764
No 224
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=48.13 E-value=6.2 Score=25.91 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=26.4
Q ss_pred HHHHHHH-hcCCCcccchhhhhcccchHHHHHHH
Q psy10745 141 QRIVELA-HNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 141 ~~iv~l~-~~g~r~~~isr~l~vshgcVskil~r 173 (197)
.+|-++. ..|+...++|+.++||..-||++.+-
T Consensus 13 ~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g 46 (84)
T 2ef8_A 13 QLLTKLRKEASLSQSELAIFLGLSQSDISKIESF 46 (84)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 3444443 67999999999999999999998763
No 225
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=48.12 E-value=13 Score=26.91 Aligned_cols=59 Identities=22% Similarity=0.238 Sum_probs=41.4
Q ss_pred CCCCCChHHHHHHHHHHhcCCCc--------ccchhhhhcccchHHHHHHHhhhhcCcccccccccc
Q psy10745 131 NGRPLPDVVRQRIVELAHNGVRP--------CDISRQLRVSHGCVSKILSRESNLHNYRLVREEGCF 189 (197)
Q Consensus 131 ngrplp~~~r~~iv~l~~~g~r~--------~~isr~l~vshgcVskil~ry~~~~n~~~~~~~~~~ 189 (197)
+..|+...+...|.+....|.=+ -++|++++||...|.+.|.+-.+.+=-....--|.|
T Consensus 6 ~~~~~~~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~~~G~~ 72 (113)
T 3tqn_A 6 DKKPIYQQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRRGLGML 72 (113)
T ss_dssp SSSCHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCeEE
Confidence 34566666677777766654432 268999999999999999998877654444445554
No 226
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=47.87 E-value=11 Score=29.29 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=33.5
Q ss_pred CCChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhh
Q psy10745 134 PLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESN 176 (197)
Q Consensus 134 plp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~ 176 (197)
.|...+ .+|++|..+|..-.+||++|.+|...|..-+.|-++
T Consensus 149 ~LT~rE-~~vL~~l~~g~s~~eIa~~l~is~~TV~~hi~~l~~ 190 (225)
T 3c3w_A 149 GLTDQE-RTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLA 190 (225)
T ss_dssp TSCHHH-HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHH-HHHHHHHHCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 355544 479999999999999999999999988875555443
No 227
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=47.16 E-value=11 Score=25.22 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=26.4
Q ss_pred HHHHHHH-hcCCCcccchhhhhcccchHHHHHHH
Q psy10745 141 QRIVELA-HNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 141 ~~iv~l~-~~g~r~~~isr~l~vshgcVskil~r 173 (197)
.+|-++. +.|+.-.++|+.++||...||+|.+-
T Consensus 13 ~~ik~~R~~~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 13 QRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3444443 58999999999999999999998764
No 228
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=46.83 E-value=6.5 Score=27.28 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=24.1
Q ss_pred HhcCCCcccchhhhhcccchHHHHHHH
Q psy10745 147 AHNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 147 ~~~g~r~~~isr~l~vshgcVskil~r 173 (197)
...|+...++|+.++||...||++.+-
T Consensus 11 ~~~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 11 KEKGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 467999999999999999999998764
No 229
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=46.67 E-value=13 Score=33.39 Aligned_cols=41 Identities=10% Similarity=0.143 Sum_probs=28.9
Q ss_pred CChHHHHHHHHHHh-----cCCCcccchhhhhcccchHHHHHHHhhh
Q psy10745 135 LPDVVRQRIVELAH-----NGVRPCDISRQLRVSHGCVSKILSRESN 176 (197)
Q Consensus 135 lp~~~r~~iv~l~~-----~g~r~~~isr~l~vshgcVskil~ry~~ 176 (197)
||+.. +.||.|.- .|..-.+||..|+||.+-|.+|+.|..+
T Consensus 361 L~~re-r~Vl~lr~~L~~~e~~Tl~EIA~~lgiS~erVrqi~~rAl~ 406 (423)
T 2a6h_F 361 LSERE-AMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALR 406 (423)
T ss_dssp SCHHH-HHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHhccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56544 45777765 7999999999999999999999888654
No 230
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=46.56 E-value=9 Score=31.24 Aligned_cols=40 Identities=15% Similarity=0.138 Sum_probs=32.0
Q ss_pred HHHHHHHHHh-c--CCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 139 VRQRIVELAH-N--GVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 139 ~r~~iv~l~~-~--g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
--.+|+++.. . ++...|||++++++...|+++|....+.+
T Consensus 9 r~l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~G 51 (249)
T 1mkm_A 9 KAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKG 51 (249)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3457887653 3 58899999999999999999999876543
No 231
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=46.52 E-value=13 Score=34.05 Aligned_cols=41 Identities=10% Similarity=0.150 Sum_probs=33.3
Q ss_pred CChHHHHHHHHHHh-----cCCCcccchhhhhcccchHHHHHHHhhh
Q psy10745 135 LPDVVRQRIVELAH-----NGVRPCDISRQLRVSHGCVSKILSRESN 176 (197)
Q Consensus 135 lp~~~r~~iv~l~~-----~g~r~~~isr~l~vshgcVskil~ry~~ 176 (197)
||+.. +.||.|.- .|..-.+||..|+||.+-|++|+.|..+
T Consensus 376 L~ere-R~VI~LRygL~~~e~~TleEIAe~LgIS~erVRqi~~RAlk 421 (438)
T 1l9z_H 376 LSERE-AMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALR 421 (438)
T ss_pred CCHHH-HHHHHHHHhccCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 55443 46777765 7899999999999999999999988754
No 232
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=46.17 E-value=13 Score=30.98 Aligned_cols=43 Identities=21% Similarity=0.239 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 136 PDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 136 p~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
..+.=.++|-+....++..+||+.|+||..-||..|.+-.+.+
T Consensus 16 s~EdYLk~I~~L~~~V~~~~LA~~LgvS~~SV~~~lkkL~e~G 58 (200)
T 2p8t_A 16 TVEDVLAVIFLLKEPLGRKQISERLELGEGSVRTLLRKLSHLD 58 (200)
T ss_dssp CHHHHHHHHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcCCccHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 3455556555557789999999999999999999999987654
No 233
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=46.03 E-value=7.2 Score=29.77 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHHhcCC--CcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 136 PDVVRQRIVELAHNGV--RPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 136 p~~~r~~iv~l~~~g~--r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
-+.++.+|+...+.|- .-.+||++++||...|+.-|.|-.+.+
T Consensus 11 ~d~l~~~Il~~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~G 55 (163)
T 2gqq_A 11 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQG 55 (163)
T ss_dssp CCSHHHHHHHHHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHT
T ss_pred hhHHHHHHHHHHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4678899998777664 467899999999999999887766554
No 234
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=45.46 E-value=12 Score=28.14 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhh
Q psy10745 135 LPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRES 175 (197)
Q Consensus 135 lp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~ 175 (197)
|+..+ .+|+++...|..-.+||+.|++|...|..-+.|-+
T Consensus 143 Lt~rE-~~vl~~l~~g~s~~~Ia~~l~is~~TV~~~~~~i~ 182 (208)
T 1yio_A 143 LTGRE-QQVLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIM 182 (208)
T ss_dssp SCHHH-HHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCHHH-HHHHHHHHcCCcHHHHHHHcCCCHHHHHHHHHHHH
Confidence 55443 46899999999999999999999999976555443
No 235
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=44.83 E-value=6.6 Score=27.76 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=27.8
Q ss_pred HHHHHH--HHhcCCCcccchhhhhcccchHHHHHHH
Q psy10745 140 RQRIVE--LAHNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 140 r~~iv~--l~~~g~r~~~isr~l~vshgcVskil~r 173 (197)
-.+|-+ +...|+...++|+.++||..-||++.+.
T Consensus 12 g~~l~~~~r~~~glsq~~lA~~~gis~~~is~~e~g 47 (113)
T 2eby_A 12 GDILLYEYLEPLDLKINELAELLHVHRNSVSALINN 47 (113)
T ss_dssp HHHHHHHTTTTTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 344544 4578999999999999999999998864
No 236
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=44.50 E-value=11 Score=26.49 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=30.0
Q ss_pred HHHHHHHH-HHhcCCCcccchhhhhcccchHHHHHHHhh
Q psy10745 138 VVRQRIVE-LAHNGVRPCDISRQLRVSHGCVSKILSRES 175 (197)
Q Consensus 138 ~~r~~iv~-l~~~g~r~~~isr~l~vshgcVskil~ry~ 175 (197)
.+|.-|.+ |...|-.....|+.|+||...+.+-|.+|.
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~LGIsr~tL~rklkk~~ 89 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLLGWGAATLTAKLKELG 89 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHHHHhC
Confidence 45555555 446677888999999999999999888884
No 237
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=44.37 E-value=13 Score=26.58 Aligned_cols=39 Identities=8% Similarity=0.119 Sum_probs=32.4
Q ss_pred CCChHHHHHHHHHHh---cCCCcccchhhhhcccchHHHHHH
Q psy10745 134 PLPDVVRQRIVELAH---NGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 134 plp~~~r~~iv~l~~---~g~r~~~isr~l~vshgcVskil~ 172 (197)
.+.+..-.+|-++.. .|+...++|+.++||..-||++.+
T Consensus 30 ~~~~~~g~~lk~~R~~~~~glsq~elA~~~gis~~~is~~E~ 71 (107)
T 2jvl_A 30 TVGKEVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYER 71 (107)
T ss_dssp CCCHHHHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 455667777877765 799999999999999999998765
No 238
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=43.77 E-value=14 Score=30.30 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCCc-ccchhhhhcccchHHHHHH
Q psy10745 138 VVRQRIVELAHNGVRP-CDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 138 ~~r~~iv~l~~~g~r~-~~isr~l~vshgcVskil~ 172 (197)
+-+.+|+|+-..|..| .+|++.|++|||-|--+|-
T Consensus 11 erk~~ILE~Lk~G~~~t~~Iak~LGlShg~aq~~Ly 46 (165)
T 2vxz_A 11 VRLRDILALLADGCKTTSLIQQRLGLSHGRAKALIY 46 (165)
T ss_dssp HHHHHHHHHHTTCCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHhCCcHHHHHHHHH
Confidence 4578999999888765 5789999999999887664
No 239
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=43.71 E-value=12 Score=28.68 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHH
Q psy10745 138 VVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 138 ~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~r 173 (197)
..-.+|-++.... ...++|+.++||.+.||+++++
T Consensus 9 ~~~~rl~~~r~~~-tq~elA~~~Gis~~~i~~~e~g 43 (189)
T 2fjr_A 9 DVLDRICEAYGFS-QKIQLANHFDIASSSLSNRYTR 43 (189)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHTTCCHHHHHHHHHS
T ss_pred HHHHHHHHHHhhc-CHHHHHHHhCcCHHHHHHHHhC
Confidence 3456777777665 8899999999999999998874
No 240
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=43.65 E-value=7.6 Score=29.09 Aligned_cols=29 Identities=7% Similarity=0.110 Sum_probs=24.7
Q ss_pred CCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 150 GVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 150 g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
++.+.+||+.++|+.+.||+++.|-.+.+
T Consensus 52 ~~t~~eLa~~l~~~~~tvsr~v~~Le~~g 80 (148)
T 4fx0_A 52 DLTMSELAARIGVERTTLTRNLEVMRRDG 80 (148)
T ss_dssp --CHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHHHCC
Confidence 37899999999999999999999986653
No 241
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=43.59 E-value=15 Score=31.51 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcC--CCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 138 VVRQRIVELAHNG--VRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 138 ~~r~~iv~l~~~g--~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
+.+.+|+++.+.+ +...+||++|+||.-.|.|-|..-.+.
T Consensus 5 ~r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~ 46 (321)
T 1bia_A 5 TVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDW 46 (321)
T ss_dssp HHHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 5678899988665 778899999999999999988876653
No 242
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=43.51 E-value=11 Score=27.67 Aligned_cols=39 Identities=10% Similarity=0.092 Sum_probs=30.5
Q ss_pred hHHHHHHHH-HHhcCCCcccchhhhhcccchHHHHHHHhh
Q psy10745 137 DVVRQRIVE-LAHNGVRPCDISRQLRVSHGCVSKILSRES 175 (197)
Q Consensus 137 ~~~r~~iv~-l~~~g~r~~~isr~l~vshgcVskil~ry~ 175 (197)
..+|.-|.+ |...|-.....|+.|+||...+.+-|.+|.
T Consensus 57 ~~Er~~I~~aL~~~~gn~~~AA~~LGIsR~TL~rkLkk~g 96 (98)
T 1eto_A 57 EVEQPLLDMVMQYTLGNQTRAALMMGINRGTLRKKLKKYG 96 (98)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 344555554 456777888999999999999999998883
No 243
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=43.49 E-value=17 Score=27.33 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=34.9
Q ss_pred HHHHHHhcC------CCcccchhhhhcccchHHHHHHHhhhhcCcccccccccccccC
Q psy10745 142 RIVELAHNG------VRPCDISRQLRVSHGCVSKILSRESNLHNYRLVREEGCFELSD 193 (197)
Q Consensus 142 ~iv~l~~~g------~r~~~isr~l~vshgcVskil~ry~~~~n~~~~~~~~~~~~~~ 193 (197)
-+++++..| +.-.+||..|++|.-.||++|++..+.+=-.. +.|.+.+.|
T Consensus 149 ~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~--~~~~i~i~d 204 (216)
T 4ev0_A 149 ALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEEGVVRL--GPGTVEVRE 204 (216)
T ss_dssp HHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE--ETTEEEESC
T ss_pred HHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe--cCCEEEEeC
Confidence 344555555 45678999999999999999999988775432 334444444
No 244
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=43.29 E-value=8.8 Score=27.87 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHH-----hcC---CCcccchhhhhcccchHH
Q psy10745 136 PDVVRQRIVELA-----HNG---VRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 136 p~~~r~~iv~l~-----~~g---~r~~~isr~l~vshgcVs 168 (197)
+...|++|++-| ++| +.-.+||+..+||.|.+-
T Consensus 8 ~~~~r~~Il~aa~~lf~~~G~~~~t~~~IA~~agvs~~tlY 48 (197)
T 3rd3_A 8 YDDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFY 48 (197)
T ss_dssp --CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHT
T ss_pred hHhHHHHHHHHHHHHHHHCCcccCCHHHHHHHhCCChhhHH
Confidence 356899998754 445 678999999999999863
No 245
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=43.10 E-value=15 Score=27.82 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=35.9
Q ss_pred CChHHHHHHHHHHhcCCCcccchhhhhc-ccchHHHHHHHh
Q psy10745 135 LPDVVRQRIVELAHNGVRPCDISRQLRV-SHGCVSKILSRE 174 (197)
Q Consensus 135 lp~~~r~~iv~l~~~g~r~~~isr~l~v-shgcVskil~ry 174 (197)
+.++.-.+|.++...|..-.+|++..+| |...|.+-|.++
T Consensus 13 ~t~e~~e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~~ 53 (140)
T 4dyq_A 13 YMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKH 53 (140)
T ss_dssp CCTTHHHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHcC
Confidence 5567888999999999999999999999 999999877765
No 246
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=42.98 E-value=12 Score=25.17 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=30.6
Q ss_pred HHHHHHHHH--hcCCCcccchhhhh----cccchHHHHHHHhhhhc
Q psy10745 139 VRQRIVELA--HNGVRPCDISRQLR----VSHGCVSKILSRESNLH 178 (197)
Q Consensus 139 ~r~~iv~l~--~~g~r~~~isr~l~----vshgcVskil~ry~~~~ 178 (197)
.+..|++.. ..++...||++.|. +|.+.|+.+|.|-.+.+
T Consensus 10 ~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kG 55 (82)
T 1p6r_A 10 AELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKG 55 (82)
T ss_dssp HHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCC
Confidence 445566654 34678899999997 68999999999986654
No 247
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=42.86 E-value=13 Score=28.10 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=31.0
Q ss_pred CCCcccchhhhhcccchHHHHHHHhhhhcCcccccccccccccC
Q psy10745 150 GVRPCDISRQLRVSHGCVSKILSRESNLHNYRLVREEGCFELSD 193 (197)
Q Consensus 150 g~r~~~isr~l~vshgcVskil~ry~~~~n~~~~~~~~~~~~~~ 193 (197)
.+.-.+||..|++|.-.||++|++..+.+=-.. +.|.+.+.|
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~--~~~~i~i~d 210 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKL--SRGKITILD 210 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTEEEESC
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe--CCCEEEEeC
Confidence 466788999999999999999999988764322 234444444
No 248
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=42.56 E-value=13 Score=28.64 Aligned_cols=41 Identities=27% Similarity=0.305 Sum_probs=33.2
Q ss_pred CChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhh
Q psy10745 135 LPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESN 176 (197)
Q Consensus 135 lp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~ 176 (197)
|...+ .+|+++...|....+||++|.+|...|+.-+.|-++
T Consensus 160 Lt~rE-~~vL~~l~~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~ 200 (225)
T 3klo_A 160 LTKRE-QQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFK 200 (225)
T ss_dssp SCHHH-HHHHHHHTTTCCHHHHHHHTTCCHHHHHHHHHHHTT
T ss_pred CCHHH-HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 55433 468899999999999999999999999886666543
No 249
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=42.54 E-value=9.8 Score=25.02 Aligned_cols=38 Identities=5% Similarity=-0.023 Sum_probs=29.3
Q ss_pred HHHHHHHHH-HhcCCCcccchhhhhcccchHHHHHHHhh
Q psy10745 138 VVRQRIVEL-AHNGVRPCDISRQLRVSHGCVSKILSRES 175 (197)
Q Consensus 138 ~~r~~iv~l-~~~g~r~~~isr~l~vshgcVskil~ry~ 175 (197)
.++.-|.+. ...+-.....|+.|+||...+..-|.+|.
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~LGisr~tL~rklkk~g 57 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEIGIDLSNLYRKIKSLN 57 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHHHHhC
Confidence 345555543 36677888999999999999999998883
No 250
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=42.45 E-value=15 Score=26.17 Aligned_cols=41 Identities=5% Similarity=0.237 Sum_probs=33.7
Q ss_pred HHHHHHHHHHh--cCCCcccchhhhhcccc-hHHHHHHHhhhhc
Q psy10745 138 VVRQRIVELAH--NGVRPCDISRQLRVSHG-CVSKILSRESNLH 178 (197)
Q Consensus 138 ~~r~~iv~l~~--~g~r~~~isr~l~vshg-cVskil~ry~~~~ 178 (197)
..+.+|+++-+ .+...-+||+.|+||.. -|.+.|.+-.+.+
T Consensus 11 ~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eG 54 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQG 54 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCC
Confidence 57889998764 35667899999999999 9999998876654
No 251
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=42.09 E-value=15 Score=31.72 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHhc--CCCcccchhhhhcccchHHHHHHHhhhhcCcccccccc
Q psy10745 136 PDVVRQRIVELAHN--GVRPCDISRQLRVSHGCVSKILSRESNLHNYRLVREEG 187 (197)
Q Consensus 136 p~~~r~~iv~l~~~--g~r~~~isr~l~vshgcVskil~ry~~~~n~~~~~~~~ 187 (197)
...-+.+|+++..+ .+...|||+++++|...||+|+.+..+.+ ++.|.|
T Consensus 14 r~~n~~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g---~i~~~~ 64 (406)
T 1z6r_A 14 KQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAH---LVQELE 64 (406)
T ss_dssp HHHHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHT---SEEEC-
T ss_pred HHhHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC---cEEeec
Confidence 34556778888753 57888999999999999999999988754 455554
No 252
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=41.53 E-value=14 Score=30.81 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=34.0
Q ss_pred CCChHHHHHHHHH-HhcCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 134 PLPDVVRQRIVEL-AHNGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 134 plp~~~r~~iv~l-~~~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
-||+..|. ++.| +.+|....+||..|++|-+.|...+.|....
T Consensus 111 ~Lp~~~R~-v~~L~~~eg~s~~EIA~~lgis~~tVks~l~rA~~~ 154 (286)
T 3n0r_A 111 RIAPRSRQ-AFLLTALEGFTPTEAAQILDCDFGEVERLIGDAQAE 154 (286)
T ss_dssp HHSCHHHH-HHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hCCHHHee-EEEEEeeCCCCHHHHHHHhCcCHHHHHHHHHHHHhh
Confidence 36655554 5555 5799999999999999999999988876643
No 253
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=41.45 E-value=13 Score=27.74 Aligned_cols=34 Identities=9% Similarity=0.109 Sum_probs=26.8
Q ss_pred ChHHHHHHHHH-----HhcC---CCcccchhhhhcccchHHH
Q psy10745 136 PDVVRQRIVEL-----AHNG---VRPCDISRQLRVSHGCVSK 169 (197)
Q Consensus 136 p~~~r~~iv~l-----~~~g---~r~~~isr~l~vshgcVsk 169 (197)
..+.|++|++- +++| +.-.|||+..+||.|.+-.
T Consensus 8 ~~~tR~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t~Y~ 49 (210)
T 3vib_A 8 ALKTKEHLMLAALETFYRKGIARTSLNEIAQAAGVTRDALYW 49 (210)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHHH
Confidence 45789999974 4455 6788999999999999843
No 254
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=40.99 E-value=13 Score=26.23 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=28.1
Q ss_pred HHHHHHHHHH-hcCCCcccchhhhhcccchHHHHHH
Q psy10745 138 VVRQRIVELA-HNGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 138 ~~r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~ 172 (197)
..-.+|-++. +.|+.-.++|+.++||..-||++.+
T Consensus 9 ~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~ 44 (114)
T 3op9_A 9 QFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3445555554 5799999999999999999999765
No 255
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=40.76 E-value=12 Score=27.61 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=27.2
Q ss_pred ChHHHHHHHH-----HHhcC---CCcccchhhhhcccchHHH
Q psy10745 136 PDVVRQRIVE-----LAHNG---VRPCDISRQLRVSHGCVSK 169 (197)
Q Consensus 136 p~~~r~~iv~-----l~~~g---~r~~~isr~l~vshgcVsk 169 (197)
....|.+|++ ++++| +.-.|||+..+||.|.+-+
T Consensus 16 ~~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~ 57 (212)
T 1pb6_A 16 VSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLY 57 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHCCChhHHHH
Confidence 4578999998 45555 6788999999999998754
No 256
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=40.75 E-value=9 Score=29.55 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=32.4
Q ss_pred cccchhhhhcccchHHHHHHHhhhhcCcccccccccccccCCc
Q psy10745 153 PCDISRQLRVSHGCVSKILSRESNLHNYRLVREEGCFELSDLE 195 (197)
Q Consensus 153 ~~~isr~l~vshgcVskil~ry~~~~n~~~~~~~~~~~~~~~~ 195 (197)
-.+||..|++|.-.||++|++..+.+ . ..+.|.+.+.|.+
T Consensus 181 ~~~iA~~lg~sr~tvsR~l~~L~~~g-i--~~~~~~i~I~d~~ 220 (237)
T 3fx3_A 181 KMLIAGRLGMKPESLSRAFSRLKAAG-V--TVKRNHAEIEDIA 220 (237)
T ss_dssp THHHHHHTTCCHHHHHHHHHHHGGGT-E--ECCTTEEEESCHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC-e--EeeCCEEEEcCHH
Confidence 56899999999999999999999998 5 3456777666543
No 257
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=39.88 E-value=19 Score=28.16 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhc--C-CCcccchhhhhcccchHHHHHHHhhhhcCcccc
Q psy10745 138 VVRQRIVELAHN--G-VRPCDISRQLRVSHGCVSKILSRESNLHNYRLV 183 (197)
Q Consensus 138 ~~r~~iv~l~~~--g-~r~~~isr~l~vshgcVskil~ry~~~~n~~~~ 183 (197)
.-+.+|+++... + +...+||++|+||-..|.+=|.+-.+. ++++.
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~-G~~I~ 68 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSL-GYNIV 68 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHH-TCCCE
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC-CCeEE
Confidence 346789988763 3 888999999999999999977776553 34443
No 258
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=39.78 E-value=8.6 Score=26.24 Aligned_cols=29 Identities=10% Similarity=0.164 Sum_probs=23.2
Q ss_pred HHHHHhcCCCcccchhhhhcccchHHHHHH
Q psy10745 143 IVELAHNGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 143 iv~l~~~g~r~~~isr~l~vshgcVskil~ 172 (197)
|-+++..+ .-...|+.|+||...||+-+.
T Consensus 7 L~~~~~~~-s~t~aA~~L~vtQ~AVS~~ir 35 (66)
T 2ovg_A 7 LKDYAMRF-GQTKTAKDLGVYPSSINQAIH 35 (66)
T ss_dssp HHHHHHHH-CHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHC-CHHHHHHHhCCCHHHHHHHHH
Confidence 34456666 778899999999999999874
No 259
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=39.60 E-value=14 Score=30.77 Aligned_cols=44 Identities=11% Similarity=-0.005 Sum_probs=32.5
Q ss_pred CChHHHHHHHHHHhcC---CCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELAHNG---VRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~~~g---~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|....=.=+..|+.++ +.+.|||+.+.++.+.||+++.|-.+-+
T Consensus 156 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~G 202 (250)
T 1p4x_A 156 LSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQG 202 (250)
T ss_dssp SCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCC
Confidence 4443333344555543 8899999999999999999999976543
No 260
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=39.55 E-value=11 Score=23.85 Aligned_cols=33 Identities=6% Similarity=0.096 Sum_probs=26.2
Q ss_pred HHHHHHH-hcCCCcccchhhhh--cccchHHHHHHH
Q psy10745 141 QRIVELA-HNGVRPCDISRQLR--VSHGCVSKILSR 173 (197)
Q Consensus 141 ~~iv~l~-~~g~r~~~isr~l~--vshgcVskil~r 173 (197)
.+|-++. ..|+...++|+.++ ||...||++.+-
T Consensus 11 ~~l~~~r~~~glsq~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 11 AKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCcCCHHHHHHHHCC
Confidence 3444443 67999999999999 999999998763
No 261
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=38.79 E-value=15 Score=32.18 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHHh--cCCCcccchhhhhcccchHHHHHHHhhhhcCcccccccc
Q psy10745 136 PDVVRQRIVELAH--NGVRPCDISRQLRVSHGCVSKILSRESNLHNYRLVREEG 187 (197)
Q Consensus 136 p~~~r~~iv~l~~--~g~r~~~isr~l~vshgcVskil~ry~~~~n~~~~~~~~ 187 (197)
...-+.+|+++.. ..+...|||+++++|...||+|+.+..+.+ ++.|.|
T Consensus 37 r~~n~~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~g---li~~~~ 87 (429)
T 1z05_A 37 KQINAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAH---LIHETT 87 (429)
T ss_dssp HHHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTT---SEEEEC
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC---CEEecc
Confidence 3455667888763 457889999999999999999999988754 455543
No 262
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=38.72 E-value=15 Score=28.56 Aligned_cols=44 Identities=14% Similarity=0.196 Sum_probs=35.2
Q ss_pred HHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhhcCccccccc
Q psy10745 142 RIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNLHNYRLVREE 186 (197)
Q Consensus 142 ~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~~n~~~~~~~ 186 (197)
-.+.++++| .-...|++|+||..-||+-+.+-.+.-+.+|+.-+
T Consensus 8 ~f~~v~~~g-s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~ 51 (294)
T 1ixc_A 8 YFIAVAEAG-NMAAAAKRLHVSQPPITRQMQALEADLGVVLLERS 51 (294)
T ss_dssp HHHHHHHHS-SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCBC--
T ss_pred HHHHHHHcC-CHHHHHHHhCCCcchHHHHHHHHHHHHCCEEEEeC
Confidence 345666666 66778999999999999999999999888887544
No 263
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=38.64 E-value=19 Score=29.32 Aligned_cols=32 Identities=31% Similarity=0.549 Sum_probs=26.5
Q ss_pred cCCC-CCChHHHHHHHHHH-hcCCCcccchhhhh
Q psy10745 130 VNGR-PLPDVVRQRIVELA-HNGVRPCDISRQLR 161 (197)
Q Consensus 130 ~ngr-plp~~~r~~iv~l~-~~g~r~~~isr~l~ 161 (197)
+||+ .+++++|+||.+.+ +.|-+|...||.|+
T Consensus 23 ln~~~~vs~~tr~rV~~aa~~lgY~pn~~ar~l~ 56 (332)
T 2hsg_A 23 VNGNPNVKPSTRKKVLETIERLGYRPNAVARGLA 56 (332)
T ss_dssp HTTCTTSCHHHHHHHHHHHHHHTCCSCHHHHHHT
T ss_pred HcCCCCCCHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 3444 58999999999987 67999999998875
No 264
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=38.60 E-value=15 Score=27.26 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=25.8
Q ss_pred ChHHHHHHHH-----HHhcC---CCcccchhhhhcccchH
Q psy10745 136 PDVVRQRIVE-----LAHNG---VRPCDISRQLRVSHGCV 167 (197)
Q Consensus 136 p~~~r~~iv~-----l~~~g---~r~~~isr~l~vshgcV 167 (197)
....|++|++ ++++| +...|||+..+||.|.+
T Consensus 12 ~~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~ 51 (203)
T 3ccy_A 12 YENIRDTIIERAAAMFARQGYSETSIGDIARACECSKSRL 51 (203)
T ss_dssp CTTHHHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGG
T ss_pred hhhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcCee
Confidence 3467999998 34555 67899999999999987
No 265
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=38.58 E-value=17 Score=27.26 Aligned_cols=36 Identities=14% Similarity=0.065 Sum_probs=27.6
Q ss_pred ccchhhhhcccchHHHHHHHhhhhcCcccccccccc
Q psy10745 154 CDISRQLRVSHGCVSKILSRESNLHNYRLVREEGCF 189 (197)
Q Consensus 154 ~~isr~l~vshgcVskil~ry~~~~n~~~~~~~~~~ 189 (197)
-++|++++||...|.+.|.+-...+=-....--|.|
T Consensus 32 ~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~g~G~~ 67 (129)
T 2ek5_A 32 NELAAFHRINPATARNGLTLLVEAGILYKKRGIGMF 67 (129)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHTTTSEEEETTTEEE
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCCEEE
Confidence 368999999999999999998877654444444554
No 266
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=38.58 E-value=14 Score=29.10 Aligned_cols=33 Identities=6% Similarity=0.136 Sum_probs=27.1
Q ss_pred HHHHHHH-hcCCCcccchhhhhcccchHHHHHHH
Q psy10745 141 QRIVELA-HNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 141 ~~iv~l~-~~g~r~~~isr~l~vshgcVskil~r 173 (197)
.+|-++. +.|+...++|+.++||.+.||++++.
T Consensus 20 ~~l~~~r~~~g~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 20 AIYEKKKNELGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp HHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4454544 57999999999999999999998875
No 267
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=38.31 E-value=18 Score=26.99 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=28.0
Q ss_pred CCChHHHHHHHHHH-----hcC---CCcccchhhhhcccchHH
Q psy10745 134 PLPDVVRQRIVELA-----HNG---VRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 134 plp~~~r~~iv~l~-----~~g---~r~~~isr~l~vshgcVs 168 (197)
.++...|++|++=| ++| +...+||+..+||.|.+-
T Consensus 8 ~~~~~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 50 (189)
T 3vp5_A 8 SLSDEKRNRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFY 50 (189)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHCCcccccHHHHHHHhCCChHHHH
Confidence 46788999999744 445 577899999999999874
No 268
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=37.95 E-value=12 Score=30.46 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=30.8
Q ss_pred HHHHHHHhc---CCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 141 QRIVELAHN---GVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 141 ~~iv~l~~~---g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
.+|+++... ++...|||+.++++...|+++|....+.+
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~G 49 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEF 49 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 467776532 57889999999999999999999876654
No 269
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=37.67 E-value=19 Score=27.64 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=27.6
Q ss_pred HHHHHHHHH-hcCCCcccchhhhhcccchHHHHHH
Q psy10745 139 VRQRIVELA-HNGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 139 ~r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~ 172 (197)
+-.+|-++. +.|+...++|+.++||.+.||+|.+
T Consensus 12 ~~~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~ 46 (192)
T 1y9q_A 12 IANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIER 46 (192)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 344555554 6799999999999999999999865
No 270
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=37.54 E-value=17 Score=26.37 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHh-----c---CCCcccchhhhhcccchH
Q psy10745 137 DVVRQRIVELAH-----N---GVRPCDISRQLRVSHGCV 167 (197)
Q Consensus 137 ~~~r~~iv~l~~-----~---g~r~~~isr~l~vshgcV 167 (197)
...|++|++-|. + ++...+||+..+||.|.+
T Consensus 6 ~~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~tl 44 (180)
T 2fd5_A 6 TQTRARILGAATQALLERGAVEPSVGEVMGAAGLTVGGF 44 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHTTCCGGGG
T ss_pred ccCHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCccHH
Confidence 467888887543 3 578899999999999987
No 271
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=37.03 E-value=19 Score=28.50 Aligned_cols=44 Identities=9% Similarity=-0.074 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHH-hcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 135 LPDVVRQRIVELA-HNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 135 lp~~~r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
|+...-.=+.-|+ +.++.+.+||+.++|+.+.||++|.|-.+.+
T Consensus 46 Lt~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~G 90 (207)
T 2fxa_A 46 LNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERG 90 (207)
T ss_dssp CCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 4433333333343 3579999999999999999999999876543
No 272
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=36.69 E-value=23 Score=23.97 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=27.5
Q ss_pred HHHHHHHHH-hcCCCcccchhhhhcccchHHHHHH
Q psy10745 139 VRQRIVELA-HNGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 139 ~r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~ 172 (197)
.-.+|-++. +.|+.-.++|+.++||...||+|-+
T Consensus 15 ~g~~l~~~R~~~gltq~elA~~~gis~~~is~~E~ 49 (86)
T 3eus_A 15 LCQRLRQARLDAGLTQADLAERLDKPQSFVAKVET 49 (86)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 445555554 6899999999999999999999764
No 273
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=36.53 E-value=19 Score=28.18 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=36.8
Q ss_pred HHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhhcCcccccccc
Q psy10745 142 RIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNLHNYRLVREEG 187 (197)
Q Consensus 142 ~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~~n~~~~~~~~ 187 (197)
-.+.++++| .-...|++|+||..-||+-|.+-.+.-+.+|+.-+|
T Consensus 10 ~f~~v~~~g-s~t~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~ 54 (306)
T 3hhg_A 10 VFVQVVESG-SFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTT 54 (306)
T ss_dssp HHHHHHHSS-SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEETTS
T ss_pred HHHHHHHcC-CHHHHHHHhCCCHHHHHHHHHHHHHHhCCeeEeecC
Confidence 355666666 667789999999999999999999999988876543
No 274
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=36.45 E-value=18 Score=26.93 Aligned_cols=34 Identities=29% Similarity=0.243 Sum_probs=27.2
Q ss_pred CCChHHHHHHHHHH-----hc---CCCcccchhhhhcccchH
Q psy10745 134 PLPDVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCV 167 (197)
Q Consensus 134 plp~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcV 167 (197)
..++..|++|++=| ++ ++.-.|||+..+||.|.+
T Consensus 5 ~~~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tl 46 (203)
T 3cdl_A 5 RLTDQKRESIVQAAIAEFGDRGFEITSMDRIAARAEVSKRTV 46 (203)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHH
Confidence 45678899998754 44 567899999999999988
No 275
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=36.13 E-value=17 Score=29.00 Aligned_cols=46 Identities=2% Similarity=-0.098 Sum_probs=37.2
Q ss_pred CChHHHHHHHHHHhcC----CCcccchhhhh-cccchHHHHHHHhhhhcCc
Q psy10745 135 LPDVVRQRIVELAHNG----VRPCDISRQLR-VSHGCVSKILSRESNLHNY 180 (197)
Q Consensus 135 lp~~~r~~iv~l~~~g----~r~~~isr~l~-vshgcVskil~ry~~~~n~ 180 (197)
|.+..|..|+++.... ...++|+..+. ||.+.|++-|....+.+=-
T Consensus 26 l~~~tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV 76 (151)
T 3u1d_A 26 VLHETRLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIV 76 (151)
T ss_dssp HCCHHHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSE
T ss_pred hcchHHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCe
Confidence 4567999999987542 56789999999 9999999999988776543
No 276
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=36.00 E-value=23 Score=26.31 Aligned_cols=57 Identities=19% Similarity=0.215 Sum_probs=37.0
Q ss_pred CCCChHHHHHHHHHHhcCC--------CcccchhhhhcccchHHHHHHHhhhhcCcccccccccc
Q psy10745 133 RPLPDVVRQRIVELAHNGV--------RPCDISRQLRVSHGCVSKILSRESNLHNYRLVREEGCF 189 (197)
Q Consensus 133 rplp~~~r~~iv~l~~~g~--------r~~~isr~l~vshgcVskil~ry~~~~n~~~~~~~~~~ 189 (197)
.|+...+-..|.+....|. .--++|++++||...|.+.|.+-...+=-....--|.|
T Consensus 10 ~~~~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~G~~ 74 (126)
T 3by6_A 10 RPVYLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPGKGTF 74 (126)
T ss_dssp CCHHHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCeEE
Confidence 3444445555555555442 23468999999999999999998777644433444444
No 277
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=35.95 E-value=10 Score=25.84 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=23.0
Q ss_pred HhcCCCcccchhhhhcccchHHHHHH
Q psy10745 147 AHNGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 147 ~~~g~r~~~isr~l~vshgcVskil~ 172 (197)
.+.|+...++|+.++||...||++.+
T Consensus 14 ~~~gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 14 KSEYLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 36799999999999999999998765
No 278
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=35.62 E-value=16 Score=27.11 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHH-----hc---CCCcccchhhhhcccchHHH
Q psy10745 136 PDVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCVSK 169 (197)
Q Consensus 136 p~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcVsk 169 (197)
....|.+|++-| ++ ++.-.+||+..+||.|.+-.
T Consensus 28 ~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~Y~ 69 (222)
T 3bru_A 28 ASLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYH 69 (222)
T ss_dssp GGGHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcchhhh
Confidence 367899999854 44 46788999999999998743
No 279
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=35.47 E-value=20 Score=26.51 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHH-----hcC---CCcccchhhhhcccchHH
Q psy10745 136 PDVVRQRIVELA-----HNG---VRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 136 p~~~r~~iv~l~-----~~g---~r~~~isr~l~vshgcVs 168 (197)
....|++|++-| ++| +...|||+..+||.|.+-
T Consensus 11 ~~~~r~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y 51 (195)
T 2iu5_A 11 SIITQKIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFY 51 (195)
T ss_dssp TSHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGG
T ss_pred cHHHHHHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCHHHHH
Confidence 456899998844 555 789999999999999873
No 280
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=34.59 E-value=23 Score=27.09 Aligned_cols=36 Identities=6% Similarity=-0.028 Sum_probs=28.7
Q ss_pred HHHHHHHHHH-hcCCCcccchhhhhcccchHHHHHHH
Q psy10745 138 VVRQRIVELA-HNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 138 ~~r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~r 173 (197)
.+-.+|-++. +.|+.-.++|+.++||.+.||+|.+-
T Consensus 10 ~~g~~l~~~r~~~g~s~~~la~~~gis~~~ls~~e~g 46 (198)
T 2bnm_A 10 GFAELLKDRREQVKMDHAALASLLGETPETVAAWENG 46 (198)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3444555554 68999999999999999999998764
No 281
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=34.21 E-value=26 Score=27.23 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=29.4
Q ss_pred HHHHHH-HhcCC--Ccccchhhhhcc-cchHHHHHHHhhhh
Q psy10745 141 QRIVEL-AHNGV--RPCDISRQLRVS-HGCVSKILSRESNL 177 (197)
Q Consensus 141 ~~iv~l-~~~g~--r~~~isr~l~vs-hgcVskil~ry~~~ 177 (197)
.+|-++ .+.|+ ...++|+.++|| .+.|++.+++..+.
T Consensus 13 ~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~l~~~ 53 (202)
T 1jhf_A 13 DLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARK 53 (202)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHHHHHC
Confidence 455554 35699 779999999999 89999999887664
No 282
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=34.07 E-value=17 Score=29.03 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=30.3
Q ss_pred CCChHHHHHHHHHHhc---------CCCcccchhhhhcccchHHHHHH
Q psy10745 134 PLPDVVRQRIVELAHN---------GVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 134 plp~~~r~~iv~l~~~---------g~r~~~isr~l~vshgcVskil~ 172 (197)
-++.+-+..++.|+.. |+...+||+.|+||.+.+.+-..
T Consensus 23 ~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 23 KLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp TSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 4677778888777533 68889999999999999876444
No 283
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=33.96 E-value=20 Score=29.64 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=32.7
Q ss_pred CCCChHHHHH-HHHHHhcCCCcccchhhhhcccchHHHHHHHh
Q psy10745 133 RPLPDVVRQR-IVELAHNGVRPCDISRQLRVSHGCVSKILSRE 174 (197)
Q Consensus 133 rplp~~~r~~-iv~l~~~g~r~~~isr~l~vshgcVskil~ry 174 (197)
+.|.+.++-+ +-+|...|+...+||+.+++|..-|++.|.-.
T Consensus 116 ~~L~~~E~a~~~~~l~~~g~t~~~iA~~lG~s~~~V~~~l~l~ 158 (230)
T 1vz0_A 116 EDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALRLL 158 (230)
T ss_dssp TTCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3666555544 55677899999999999999999999877543
No 284
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=33.68 E-value=15 Score=26.73 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=24.3
Q ss_pred HHHHHHHHHH-----hc---CCCcccchhhhhcccchHH
Q psy10745 138 VVRQRIVELA-----HN---GVRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 138 ~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcVs 168 (197)
..|++|++=| ++ ++.-.|||+..+||.|.+=
T Consensus 2 ~tr~~Il~aA~~lf~~~Gy~~~s~~~Ia~~agvskgtlY 40 (179)
T 2eh3_A 2 GTKERILEVSKELFFEKGYQGTSVEEIVKRANLSKGAFY 40 (179)
T ss_dssp CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCCcHHHH
Confidence 4678888754 44 5678999999999999873
No 285
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=33.61 E-value=24 Score=26.21 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=24.7
Q ss_pred CCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 151 VRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 151 ~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
..+.+||+.+++|.+-|+++|.+--+.+
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kG 79 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKG 79 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 7889999999999999999999876543
No 286
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=33.48 E-value=28 Score=25.68 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=40.8
Q ss_pred CCCCChHHHHHHHHHHhcCCC--------cccchhhhhcccchHHHHHHHhhhhcCcccccccccc
Q psy10745 132 GRPLPDVVRQRIVELAHNGVR--------PCDISRQLRVSHGCVSKILSRESNLHNYRLVREEGCF 189 (197)
Q Consensus 132 grplp~~~r~~iv~l~~~g~r--------~~~isr~l~vshgcVskil~ry~~~~n~~~~~~~~~~ 189 (197)
..|+-..+...|.+....|.= --++|++++||...|.+.|.+-.+.+=-....--|.|
T Consensus 11 ~~~~~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~ 76 (125)
T 3neu_A 11 DKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSF 76 (125)
T ss_dssp SSCHHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCEEE
Confidence 456666677777776665432 2368999999999999999998777644444444554
No 287
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=33.44 E-value=29 Score=28.78 Aligned_cols=41 Identities=12% Similarity=0.132 Sum_probs=31.2
Q ss_pred CCCCChHHHHHHHHHH-hcC--CCcccchhhhhcccchHHHHHH
Q psy10745 132 GRPLPDVVRQRIVELA-HNG--VRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 132 grplp~~~r~~iv~l~-~~g--~r~~~isr~l~vshgcVskil~ 172 (197)
=|||++++|-+=.+-+ ..| ..-.++|+.++||+.=||+-|.
T Consensus 21 ~rplS~yErg~~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~ 64 (189)
T 3mky_B 21 YRPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCIN 64 (189)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHH
Confidence 3799999997765554 355 6888999999999988887553
No 288
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=33.15 E-value=13 Score=27.74 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=29.7
Q ss_pred CCCCChHHHHHHHHHH-----hc---CCCcccchhhhhcccchHHH
Q psy10745 132 GRPLPDVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCVSK 169 (197)
Q Consensus 132 grplp~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcVsk 169 (197)
|||=....|++|++-| ++ ++.-.+||+..+||.|.+-.
T Consensus 17 ~r~r~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~ 62 (214)
T 2zb9_A 17 GRRPAEEVRAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTLYK 62 (214)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHH
Confidence 4566677899999744 44 57889999999999998743
No 289
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=33.13 E-value=20 Score=29.38 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=24.8
Q ss_pred CCChHHHHHHHHHH-hcCCCcccchhhhh
Q psy10745 134 PLPDVVRQRIVELA-HNGVRPCDISRQLR 161 (197)
Q Consensus 134 plp~~~r~~iv~l~-~~g~r~~~isr~l~ 161 (197)
.+++++|+||.+.+ +.|-+|...||.|+
T Consensus 26 ~vs~~tr~rV~~~a~~lgY~pn~~ar~l~ 54 (340)
T 1qpz_A 26 FVAEETRNAVWAAIKELHYSPSAVARSLK 54 (340)
T ss_dssp CCCHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCHHHHhhc
Confidence 58999999999987 57999999998875
No 290
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=33.08 E-value=14 Score=27.36 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=23.4
Q ss_pred hcCCCcccchhhhhcccchHHHHHH
Q psy10745 148 HNGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 148 ~~g~r~~~isr~l~vshgcVskil~ 172 (197)
+.|+.-.++|++++||...||+|.+
T Consensus 51 ~~glTQ~eLA~~lGis~~~Is~iE~ 75 (120)
T 2o38_A 51 RARLSQAAAAARLGINQPKVSALRN 75 (120)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 6799999999999999999999876
No 291
>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP}
Probab=33.01 E-value=42 Score=27.73 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=29.3
Q ss_pred CCcCCHHHHHHHHHHHHhCCCcchHHhHHHHHhcC
Q psy10745 31 PKVATAPVVDAIASYKRENPTMFAWEIRDRLLAEG 65 (197)
Q Consensus 31 pk~~tp~v~~~I~~~k~e~P~iFaWEIRdrLl~~G 65 (197)
.+.++|-|...+.-+++.+|++...|||+.|+.--
T Consensus 223 TS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA 257 (278)
T 2b6n_A 223 TSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRA 257 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 34677888888888888999999999999999754
No 292
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=33.01 E-value=25 Score=23.27 Aligned_cols=33 Identities=9% Similarity=0.009 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCCcccchhhhhcccchHHHHHHH
Q psy10745 140 RQRIVELAHNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 140 r~~iv~l~~~g~r~~~isr~l~vshgcVskil~r 173 (197)
-.+|-++.+.- .-.++|+.++||...||+|.+-
T Consensus 18 g~~l~~~R~~~-sq~~lA~~~gis~~~is~~E~g 50 (86)
T 2ofy_A 18 GELLRSARGDM-SMVTVAFDAGISVETLRKIETG 50 (86)
T ss_dssp HHHHHHHHTTS-CHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHC-CHHHHHHHhCCCHHHHHHHHcC
Confidence 34555555555 7789999999999999998764
No 293
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=32.49 E-value=16 Score=26.45 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=24.4
Q ss_pred hHHHHHHHH-----HHhcC---CCcccchhhhhcccchH
Q psy10745 137 DVVRQRIVE-----LAHNG---VRPCDISRQLRVSHGCV 167 (197)
Q Consensus 137 ~~~r~~iv~-----l~~~g---~r~~~isr~l~vshgcV 167 (197)
...|++|++ ++++| +...+||+..+||.|.+
T Consensus 7 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~ 45 (183)
T 1zk8_A 7 GLTLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSL 45 (183)
T ss_dssp CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccccCHHHHHHHcCCCchHH
Confidence 346788887 34455 88899999999999987
No 294
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=32.36 E-value=30 Score=24.74 Aligned_cols=36 Identities=11% Similarity=0.199 Sum_probs=29.1
Q ss_pred hHHHHHHHHHH-hcCCCcccchhhhhcccchHHHHHH
Q psy10745 137 DVVRQRIVELA-HNGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 137 ~~~r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~ 172 (197)
...-.+|-++. ..|+.-.++|+.++||...||+|.+
T Consensus 11 ~~~g~~lk~~R~~~glsq~~lA~~~gis~~~is~~E~ 47 (126)
T 3ivp_A 11 RALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIEN 47 (126)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 34556666655 5899999999999999999999864
No 295
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=32.14 E-value=16 Score=26.67 Aligned_cols=31 Identities=16% Similarity=0.458 Sum_probs=24.7
Q ss_pred hHHHHHHHHHH-----hc---CCCcccchhhhhcccchH
Q psy10745 137 DVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCV 167 (197)
Q Consensus 137 ~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcV 167 (197)
...|++|++-| ++ ++...+||+..+||.|.+
T Consensus 2 ~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~ 40 (189)
T 3geu_A 2 NAMKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASL 40 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCHHHH
T ss_pred chHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHH
Confidence 56788888754 33 588899999999999986
No 296
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=31.99 E-value=36 Score=25.38 Aligned_cols=41 Identities=12% Similarity=-0.018 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 138 VVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 138 ~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
.....+++|...|+.+.+||.+-+++-..|-.=|..+...+
T Consensus 20 ~t~~~t~~l~~~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G 60 (122)
T 3iuo_A 20 KMKVSIVQQIDRKVALDDIAVSHGLDFPELLSEVETIVYSG 60 (122)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 46789999999999999999999999888877666665554
No 297
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=31.72 E-value=26 Score=24.92 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=28.4
Q ss_pred HHHHHHHHHH-hcCCCcccchhhhhcccchHHHHHH
Q psy10745 138 VVRQRIVELA-HNGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 138 ~~r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~ 172 (197)
..-.+|-++. +.|+.-.++|+.++||..-||+|.+
T Consensus 21 ~~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E~ 56 (114)
T 3vk0_A 21 VLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVER 56 (114)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4455666654 6899999999999999999999864
No 298
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=31.54 E-value=12 Score=28.29 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=26.1
Q ss_pred CChHHHHHHHHHH-----hc---CCCcccchhhhhcccchHH
Q psy10745 135 LPDVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 135 lp~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcVs 168 (197)
++...|++|++=| ++ ++...+||+..+||.|.+-
T Consensus 2 m~~~tr~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y 43 (228)
T 3nnr_A 2 MTMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGNLY 43 (228)
T ss_dssp --CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHhChhhcCHHHHHHHhCCCCccch
Confidence 4667899998744 44 4788999999999999874
No 299
>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus}
Probab=31.35 E-value=47 Score=27.18 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=30.3
Q ss_pred CCcCCHHHHHHHHHHHHhCCCcchHHhHHHHHhcCC
Q psy10745 31 PKVATAPVVDAIASYKRENPTMFAWEIRDRLLAEGI 66 (197)
Q Consensus 31 pk~~tp~v~~~I~~~k~e~P~iFaWEIRdrLl~~Gv 66 (197)
.+.++|-|...+.-+++.+|++...|||+.|+.--.
T Consensus 221 TS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~ 256 (276)
T 4dzt_A 221 TSMATPHVAGVAALYLEQNPSATPASVASAILNGAT 256 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCc
Confidence 456778888888888899999999999999998644
No 300
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=31.27 E-value=17 Score=27.21 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=25.0
Q ss_pred CCcccchhhhhcccchHHHHHHHhhhhcC
Q psy10745 151 VRPCDISRQLRVSHGCVSKILSRESNLHN 179 (197)
Q Consensus 151 ~r~~~isr~l~vshgcVskil~ry~~~~n 179 (197)
+.-.+||..|++|.-.||++|++..+.+=
T Consensus 165 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~ 193 (207)
T 2oz6_A 165 ITRQEIGRIVGCSREMVGRVLKSLEEQGL 193 (207)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCCC
Confidence 34568999999999999999999987764
No 301
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=31.04 E-value=21 Score=26.30 Aligned_cols=33 Identities=15% Similarity=0.290 Sum_probs=26.1
Q ss_pred ChHHHHHHHHH-----HhcC---CCcccchhhhhcccchHH
Q psy10745 136 PDVVRQRIVEL-----AHNG---VRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 136 p~~~r~~iv~l-----~~~g---~r~~~isr~l~vshgcVs 168 (197)
+...|++|++= +++| +...+||+..+||.|.+-
T Consensus 29 ~~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y 69 (218)
T 3dcf_A 29 GNDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIY 69 (218)
T ss_dssp -CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHH
Confidence 45789999874 4555 778999999999999874
No 302
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=30.98 E-value=16 Score=26.83 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHh--------cCCCcccchhhhhcccchHH
Q psy10745 137 DVVRQRIVELAH--------NGVRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 137 ~~~r~~iv~l~~--------~g~r~~~isr~l~vshgcVs 168 (197)
...|++|++-|. .++.-.|||+..+||.|.|-
T Consensus 17 ~~~R~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY 56 (212)
T 3loc_A 17 SAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLL 56 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHh
Confidence 456889987653 36889999999999999874
No 303
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=30.85 E-value=17 Score=27.64 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=24.7
Q ss_pred CCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 151 VRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 151 ~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
+.-.|||..|++|.-.||++|++..+.+
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~~L~~~g 215 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLKKLQADG 215 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCC
Confidence 3457899999999999999999998776
No 304
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=30.82 E-value=31 Score=24.28 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=26.5
Q ss_pred HHHHHHH-hcCCCcccchhhhhcccchHHHHHH
Q psy10745 141 QRIVELA-HNGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 141 ~~iv~l~-~~g~r~~~isr~l~vshgcVskil~ 172 (197)
.+|-++. +.|+.-.++|+.++||...||+|.+
T Consensus 31 ~~lr~~R~~~gltq~elA~~~gis~~~is~iE~ 63 (99)
T 3g5g_A 31 FVIKKIRLEKGMTQEDLAYKSNLDRTYISGIER 63 (99)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4455544 6899999999999999999999875
No 305
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=30.77 E-value=25 Score=25.51 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=27.7
Q ss_pred HHHHhc----CCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 144 VELAHN----GVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 144 v~l~~~----g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
+.|+.+ .+...+||++++||..-|.|||..-.+.+
T Consensus 16 ~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~G 54 (129)
T 2y75_A 16 IELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAG 54 (129)
T ss_dssp HHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 445553 36667899999999999999999887654
No 306
>3eu6_A NS1, nonstructural protein 1; H5N1, cytoplasm, HOST-virus interaction, interferon antiviral system evasion, nucleus, RNA-binding; 2.70A {Influenza virus} PDB: 3f5t_A
Probab=30.58 E-value=14 Score=30.94 Aligned_cols=18 Identities=22% Similarity=0.652 Sum_probs=17.0
Q ss_pred CcchHHhHHHHHhcCCCC
Q psy10745 51 TMFAWEIRDRLLAEGICS 68 (197)
Q Consensus 51 ~iFaWEIRdrLl~~GvC~ 68 (197)
++|+|-||.+++.+|+++
T Consensus 12 dCfLWHiRkrfad~~lgD 29 (215)
T 3eu6_A 12 DCFLWHVRKRFADQELGD 29 (215)
T ss_dssp HHHHHHHHHHHHHHSCCC
T ss_pred ehhhHHHHHHHhhccccc
Confidence 589999999999999997
No 307
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=30.56 E-value=24 Score=26.50 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHH-----hc---CCCcccchhhhhcccchHH
Q psy10745 136 PDVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 136 p~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcVs 168 (197)
....|++|++=| ++ ++.-.|||+..+||.|.+=
T Consensus 9 ~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY 49 (210)
T 2wui_A 9 SQKTRDGILDAAERVFLEKGVGTTAMADLADAAGVSRGAVY 49 (210)
T ss_dssp CTHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHH
Confidence 456789998754 44 5788999999999999983
No 308
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=30.56 E-value=11 Score=32.56 Aligned_cols=40 Identities=10% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHH--hcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 139 VRQRIVELA--HNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 139 ~r~~iv~l~--~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
-+.+|+++. +.++...|||+.|+||...|++.|.+-.+.+
T Consensus 21 r~~~iL~~l~~~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~~G 62 (345)
T 2o0m_A 21 ERFQILRNIYWMQPIGRRSLSETMGITERVLRTETDVLKQLN 62 (345)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 345566653 5689999999999999999999998875543
No 309
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=30.53 E-value=50 Score=25.69 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhhcCcccccc
Q psy10745 140 RQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNLHNYRLVRE 185 (197)
Q Consensus 140 r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~~n~~~~~~ 185 (197)
=+-.+.++++| .-...|++|.||+.-||+-|.+-.+.-+.+|+.-
T Consensus 9 l~~f~~v~~~~-s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R 53 (306)
T 3fzv_A 9 LKYFVTTVECG-SVAEASRKLYIAQPSISTAVKGLEESFGVQLFIR 53 (306)
T ss_dssp HHHHHHHHHSS-SHHHHHHHHTCCC-CHHHHHHHHHHHC-CCCC--
T ss_pred HHHHHHHHHhC-CHHHHHHHhCCCchHHHHHHHHHHHHhCCeeEee
Confidence 34456677777 6777899999999999999999999999999755
No 310
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.80 E-value=37 Score=25.55 Aligned_cols=44 Identities=20% Similarity=0.059 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHh---cCCCcccchhhh-----hcccchHHHHHHHhhhhcCc
Q psy10745 137 DVVRQRIVELAH---NGVRPCDISRQL-----RVSHGCVSKILSRESNLHNY 180 (197)
Q Consensus 137 ~~~r~~iv~l~~---~g~r~~~isr~l-----~vshgcVskil~ry~~~~n~ 180 (197)
...|..|+++.. ..+...||...| .||-..|...|..+.+.+=-
T Consensus 21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 367899998874 367889999998 79999999999998876643
No 311
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=29.62 E-value=11 Score=28.51 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=0.0
Q ss_pred HhcCCCcccchhhhhcccchHHHHHH
Q psy10745 147 AHNGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 147 ~~~g~r~~~isr~l~vshgcVskil~ 172 (197)
...|+...+||+.++||...||++.+
T Consensus 11 ~~~gltq~elA~~lgis~~~vs~~e~ 36 (158)
T 2p5t_A 11 KTHDLTQLEFARIVGISRNSLSRYEN 36 (158)
T ss_dssp --------------------------
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 36789999999999999999999854
No 312
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=29.38 E-value=28 Score=24.56 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=24.8
Q ss_pred hcCCCcccchhhhh----cccchHHHHHHHhhhh
Q psy10745 148 HNGVRPCDISRQLR----VSHGCVSKILSRESNL 177 (197)
Q Consensus 148 ~~g~r~~~isr~l~----vshgcVskil~ry~~~ 177 (197)
+.++...|||+.+. ++.+.|+.+|.|-.+-
T Consensus 22 ~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~k 55 (126)
T 1sd4_A 22 KKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKK 55 (126)
T ss_dssp SSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHC
Confidence 34688899999998 5899999999986543
No 313
>1i3j_A I-TEVI, intron-associated endonuclease 1; protein-DNA complex, extended structure, Zn-finger, minor groove helix, helix-turn-helix; 2.20A {Enterobacteria phage T4} SCOP: d.285.1.1 PDB: 1t2t_A
Probab=29.23 E-value=44 Score=25.52 Aligned_cols=69 Identities=17% Similarity=0.280 Sum_probs=39.3
Q ss_pred CCCCCccccchhhcccCCCccc------cCCc-cccCCCCCChHHHHHHHHHHhcCCCc----------------ccchh
Q psy10745 102 GRPLPDVVRQRIVASRSHGGVN------QLGG-VFVNGRPLPDVVRQRIVELAHNGVRP----------------CDISR 158 (197)
Q Consensus 102 grPLPd~~RqRIVaS~~~~~~n------qlg~-~~~ngrplp~~~r~~iv~l~~~g~r~----------------~~isr 158 (197)
|+...++++++|-.... +.+ +.|. -.-=|+..+++.+.+|-+ +..|..+ .+.||
T Consensus 15 Gk~hseEtK~kiS~~~~--g~~~~ks~~~~Ge~n~~yGK~hS~EtK~KmSe-a~kG~~~~~sk~v~idG~~f~S~~eAar 91 (116)
T 1i3j_A 15 NPETHKFCKCGVRIQTS--AYTCSKCRNRSGENNSFFNHKHSDITKSKISE-KMKGKKPSNIKKISCDGVIFDCAADAAR 91 (116)
T ss_dssp -----CBCTTSCBCCTT--CSSCTTTCCCSGGGSTTTTCCCCHHHHHHHHH-HHTTCCCTTCCCEEETTEEESSHHHHHH
T ss_pred CcccCHHHHHHHHHHhh--CCcccHHHHhccCcCcccCccCCHHHHHHHHH-HhcCCCCCCCceEEECCEEEcCHHHHHH
Confidence 66677777777653321 111 1120 011268888888888888 4455333 34599
Q ss_pred hhhcccchHHHHHHH
Q psy10745 159 QLRVSHGCVSKILSR 173 (197)
Q Consensus 159 ~l~vshgcVskil~r 173 (197)
.|++|++.|++-+.+
T Consensus 92 ~lg~s~~ti~~~~~~ 106 (116)
T 1i3j_A 92 HFKISSGLVTYRVKS 106 (116)
T ss_dssp HHTCCHHHHHHHHHC
T ss_pred HHCCCchhHHHHHhc
Confidence 999999999887643
No 314
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=28.91 E-value=21 Score=27.06 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=31.7
Q ss_pred CCcccchhhhhcccchHHHHHHHhhhhcCcccccccccccccCCc
Q psy10745 151 VRPCDISRQLRVSHGCVSKILSRESNLHNYRLVREEGCFELSDLE 195 (197)
Q Consensus 151 ~r~~~isr~l~vshgcVskil~ry~~~~n~~~~~~~~~~~~~~~~ 195 (197)
+.-.+||..|++|.-.||++|++..+.+=-.. +.|.+.+.|.+
T Consensus 179 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~--~~~~i~i~d~~ 221 (227)
T 3dkw_A 179 VAKQLVAGHLSIQPETFSRIMHRLGDEGIIHL--DGREISILDRE 221 (227)
T ss_dssp SCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEE--SSSCEEESCST
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEe--cCCEEEEeCHH
Confidence 34578999999999999999999988874433 33555555443
No 315
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=28.78 E-value=18 Score=23.82 Aligned_cols=25 Identities=8% Similarity=-0.027 Sum_probs=22.6
Q ss_pred hcCCCcccchhhhhcccchHHHHHH
Q psy10745 148 HNGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 148 ~~g~r~~~isr~l~vshgcVskil~ 172 (197)
+.|+.-.+.|+.++||...||++-+
T Consensus 22 ~~gltq~elA~~~gvs~~tis~~E~ 46 (73)
T 3fmy_A 22 KLSLTQKEASEIFGGGVNAFSRYEK 46 (73)
T ss_dssp HTTCCHHHHHHHHCSCTTHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 5799999999999999999998764
No 316
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=28.75 E-value=30 Score=27.06 Aligned_cols=42 Identities=7% Similarity=0.091 Sum_probs=30.8
Q ss_pred CCcccchhhhhcccchHHHHHHHhhhhcCcccccccccccccCC
Q psy10745 151 VRPCDISRQLRVSHGCVSKILSRESNLHNYRLVREEGCFELSDL 194 (197)
Q Consensus 151 ~r~~~isr~l~vshgcVskil~ry~~~~n~~~~~~~~~~~~~~~ 194 (197)
+.-.|||..|++|.-.||++|++..+.+=-.. +.|.+.+.|.
T Consensus 194 lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~--~~~~i~I~d~ 235 (243)
T 3la7_A 194 LSHQAIAEAIGSTRVTVTRLLGDLREKKMISI--HKKKITVHKP 235 (243)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTEEEECC-
T ss_pred CCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEE--cCCEEEECCH
Confidence 44579999999999999999999988764332 3355555554
No 317
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=28.08 E-value=20 Score=26.93 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=29.9
Q ss_pred CCcccchhhhhcccchHHHHHHHhhhhcCcccccccccccccC
Q psy10745 151 VRPCDISRQLRVSHGCVSKILSRESNLHNYRLVREEGCFELSD 193 (197)
Q Consensus 151 ~r~~~isr~l~vshgcVskil~ry~~~~n~~~~~~~~~~~~~~ 193 (197)
+.-.+||..|++|.-.||++|++..+.+=-.. +.|.+.+.|
T Consensus 147 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~--~~~~i~i~d 187 (202)
T 2zcw_A 147 ATHDELAAAVGSVRETVTKVIGELAREGYIRS--GYGKIQLLD 187 (202)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTEEEESC
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe--CCCEEEEeC
Confidence 44578999999999999999999988764332 234444444
No 318
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=27.84 E-value=22 Score=26.55 Aligned_cols=32 Identities=13% Similarity=0.096 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHH-----hc---CCCcccchhhhhcccchH
Q psy10745 136 PDVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCV 167 (197)
Q Consensus 136 p~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcV 167 (197)
+...|++|++-| ++ ++...|||+..+||.|.+
T Consensus 12 ~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~tl 51 (199)
T 3crj_A 12 FSDQTEEIMQATYRALREHGYADLTIQRIADEYGKSTAAV 51 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHTSCHHHH
T ss_pred chhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChhHH
Confidence 457899999754 44 478999999999999988
No 319
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=27.83 E-value=29 Score=25.52 Aligned_cols=34 Identities=24% Similarity=0.472 Sum_probs=27.8
Q ss_pred CChHHHHHHHHHH-----hcC---CCcccchhhhhcccchHH
Q psy10745 135 LPDVVRQRIVELA-----HNG---VRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 135 lp~~~r~~iv~l~-----~~g---~r~~~isr~l~vshgcVs 168 (197)
.+...|++|++=| ++| +.-.+||+..+||.|.+-
T Consensus 10 ~~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY 51 (217)
T 3nrg_A 10 LPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFY 51 (217)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCTTGGG
T ss_pred ChHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHH
Confidence 4678899999854 455 788999999999999873
No 320
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=27.79 E-value=40 Score=25.86 Aligned_cols=48 Identities=8% Similarity=0.064 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhhcCccccccc
Q psy10745 138 VVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNLHNYRLVREE 186 (197)
Q Consensus 138 ~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~~n~~~~~~~ 186 (197)
..-+-.+.+++.| .-...|++|+||+.-||+.+.+-.+.-+.+|+.-+
T Consensus 27 ~~L~~f~av~e~g-S~s~AA~~L~iSqsavS~~I~~LE~~lG~~Lf~R~ 74 (135)
T 2ijl_A 27 GKVELMQLIAETG-SISAAGRAMDMSYRRAWLLVDALNHMFRQPVICSQ 74 (135)
T ss_dssp HHHHHHHHHHHHS-CHHHHHHHTTCCHHHHHHHHHHHHHHBSSCSEEEC
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHCcCHHHHHHHHHHHHHHHCCeeEEec
Confidence 3334455566666 77788999999999999999999999999998665
No 321
>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*
Probab=27.74 E-value=42 Score=28.03 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=30.0
Q ss_pred CCcCCHHHHHHHHHHHHhCCCcchHHhHHHHHhcCC
Q psy10745 31 PKVATAPVVDAIASYKRENPTMFAWEIRDRLLAEGI 66 (197)
Q Consensus 31 pk~~tp~v~~~I~~~k~e~P~iFaWEIRdrLl~~Gv 66 (197)
.+.++|-|...+.-+++.+|++...|||+.|.+--.
T Consensus 219 TS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~ 254 (284)
T 1sh7_A 219 TSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRAS 254 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSE
T ss_pred hHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCc
Confidence 446778888888888889999999999999997543
No 322
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=27.69 E-value=25 Score=25.86 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=24.2
Q ss_pred HHHHHHHHHH-----hc---CCCcccchhhhhcccchH
Q psy10745 138 VVRQRIVELA-----HN---GVRPCDISRQLRVSHGCV 167 (197)
Q Consensus 138 ~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcV 167 (197)
..|++|++-| ++ ++.-.|||+..+||.|.+
T Consensus 7 ~tRe~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tl 44 (178)
T 4hku_A 7 LSQEIILNMAEKIIYEKGMEKTTLYDIASNLNVTHAAL 44 (178)
T ss_dssp CCHHHHHHHHHHHHHHHCGGGCCHHHHHHHTTSCGGGG
T ss_pred HHHHHHHHHHHHHHHHhCcccccHHHHHHHhCcCHhHH
Confidence 4588888755 33 578899999999999987
No 323
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=27.65 E-value=29 Score=25.68 Aligned_cols=32 Identities=25% Similarity=0.521 Sum_probs=25.7
Q ss_pred hHHHHHHHHHH-----hc---CCCcccchhhhhcccchHH
Q psy10745 137 DVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 137 ~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcVs 168 (197)
...|++|++-| ++ ++...|||+..+||.|.+-
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y 49 (212)
T 2ras_A 10 DAMRARLVDVAQAIVEERGGAGLTLSELAARAGISQANLS 49 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHTSCHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhCcccCcHHHHHHHhCCCHHHHH
Confidence 46788998754 33 5788999999999999873
No 324
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=27.59 E-value=20 Score=25.67 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=25.3
Q ss_pred HHHHHHHHHH-----hc---CCCcccchhhhhcccchHHH
Q psy10745 138 VVRQRIVELA-----HN---GVRPCDISRQLRVSHGCVSK 169 (197)
Q Consensus 138 ~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcVsk 169 (197)
+.|++|++-| ++ ++...|||+..+||.|.+-+
T Consensus 4 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 43 (170)
T 3egq_A 4 DQSVRIIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFY 43 (170)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccCcHHHHHHHhCCCchhHHH
Confidence 5788888754 34 47889999999999998743
No 325
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=27.54 E-value=29 Score=27.87 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=30.8
Q ss_pred CCChH-HHHHHHHHHhcCCCcccchhhhhcccchHHHHHHH
Q psy10745 134 PLPDV-VRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 134 plp~~-~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~r 173 (197)
.|.+. .=.-+-.|...|....+||+.+++|..-|++.|.-
T Consensus 35 dL~piE~A~a~~~L~~~G~t~eeiA~~lG~s~s~V~~~LrL 75 (178)
T 1r71_A 35 ELTPREIADFIGRELAKGKKKGDIAKEIGKSPAFITQHVTL 75 (178)
T ss_dssp CCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34443 44445667788999999999999999999987754
No 326
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=27.41 E-value=21 Score=26.66 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=25.0
Q ss_pred CCcccchhhhhcccchHHHHHHHhhhhcC
Q psy10745 151 VRPCDISRQLRVSHGCVSKILSRESNLHN 179 (197)
Q Consensus 151 ~r~~~isr~l~vshgcVskil~ry~~~~n 179 (197)
+.-.+||..|++|.-.||++|++..+.+=
T Consensus 168 ~t~~~iA~~lg~sr~tvsR~l~~L~~~g~ 196 (210)
T 3ryp_A 168 ITRQEIGQIVGCSRETVGRILKMLEDQNL 196 (210)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHHHCCc
Confidence 34578999999999999999999987763
No 327
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=27.18 E-value=22 Score=27.01 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=25.2
Q ss_pred CCcccchhhhhcccchHHHHHHHhhhhcC
Q psy10745 151 VRPCDISRQLRVSHGCVSKILSRESNLHN 179 (197)
Q Consensus 151 ~r~~~isr~l~vshgcVskil~ry~~~~n 179 (197)
+.-.|||..|++|.-.||++|++..+.+=
T Consensus 168 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~ 196 (220)
T 2fmy_A 168 LNTEEIALMLGTTRQTVSVLLNDFKKMGI 196 (220)
T ss_dssp SCHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCC
Confidence 44578999999999999999999988764
No 328
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=27.12 E-value=37 Score=26.20 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 141 QRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 141 ~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
..|+.+...|....+||+.|++|...|..-+.+.++.
T Consensus 204 ~~i~~~~~~g~~~~eia~~l~~s~~tv~~~l~~i~~k 240 (258)
T 3p7n_A 204 LEVTTLVASGLRNKEVAARLGLSEKTVKMHRGLVMEK 240 (258)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4688888899999999999999999999877665543
No 329
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=27.05 E-value=33 Score=28.16 Aligned_cols=49 Identities=14% Similarity=0.047 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCCc---ccchhhhhcccchHHHHHHHhhhhcCcccccccccc
Q psy10745 139 VRQRIVELAHNGVRP---CDISRQLRVSHGCVSKILSRESNLHNYRLVREEGCF 189 (197)
Q Consensus 139 ~r~~iv~l~~~g~r~---~~isr~l~vshgcVskil~ry~~~~n~~~~~~~~~~ 189 (197)
++++|.. ...|-+- -++|++++||...|.+-|.+-.+.+=-.- .--|.|
T Consensus 23 l~~~I~~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~-~g~Gt~ 74 (248)
T 3f8m_A 23 LDRMLDG-MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER-RGRTTV 74 (248)
T ss_dssp HHHHHHH-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE-ETTEEE
T ss_pred HHHHHhC-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe-CCCEEE
Confidence 4444544 3344332 46799999999999999988776654443 444444
No 330
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=27.00 E-value=28 Score=27.69 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=24.9
Q ss_pred CcccchhhhhcccchHHHHHHHhhhhcCc
Q psy10745 152 RPCDISRQLRVSHGCVSKILSRESNLHNY 180 (197)
Q Consensus 152 r~~~isr~l~vshgcVskil~ry~~~~n~ 180 (197)
.-.+||..|++|.-.||++|++..+.+=-
T Consensus 219 t~~~lA~~lG~sr~tvsR~l~~L~~~GlI 247 (260)
T 3kcc_A 219 TRQEIGQIVGCSRETVGRILKMLEDQNLI 247 (260)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHCCCE
Confidence 34789999999999999999999887643
No 331
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=26.98 E-value=48 Score=24.43 Aligned_cols=57 Identities=21% Similarity=0.304 Sum_probs=38.5
Q ss_pred CCChHHHHHHHHHHhcC-CCc-------ccchhhhhcccchHHHHHHHhhhhcCccccccccccc
Q psy10745 134 PLPDVVRQRIVELAHNG-VRP-------CDISRQLRVSHGCVSKILSRESNLHNYRLVREEGCFE 190 (197)
Q Consensus 134 plp~~~r~~iv~l~~~g-~r~-------~~isr~l~vshgcVskil~ry~~~~n~~~~~~~~~~~ 190 (197)
||-..+-.+|.+.-..| .+| -++|.+++||...|.+-|.+-...+=-....-.|.|-
T Consensus 14 PlY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~g~G~~V 78 (134)
T 4ham_A 14 PIYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKGKGTFI 78 (134)
T ss_dssp CHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcCcEEEE
Confidence 44444555666655444 222 2579999999999999999888777555555556653
No 332
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=26.95 E-value=35 Score=25.21 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=25.3
Q ss_pred hHHHHHHHHHH-----hc---CCCcccchhhhhcccchHH
Q psy10745 137 DVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 137 ~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcVs 168 (197)
...|++|++=| ++ ++.-.|||+..+||.|.+-
T Consensus 11 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY 50 (197)
T 2hyt_A 11 EETRATLLATARKVFSERGYADTSMDDLTAQASLTRGALY 50 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHH
Confidence 45788888744 44 4788999999999999874
No 333
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=26.85 E-value=27 Score=26.07 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=27.0
Q ss_pred ccCCC-CCChHHHHHHHHHH-----hc---CCCcccchhhhhcccchHHH
Q psy10745 129 FVNGR-PLPDVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCVSK 169 (197)
Q Consensus 129 ~~ngr-plp~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcVsk 169 (197)
...|| +-....|++|++-| ++ ++.-.+||+..+||.|.+-.
T Consensus 18 ~~~~R~~r~~~~r~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~~t~Y~ 67 (215)
T 2qko_A 18 YFQGHMAQNPERRAALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASN 67 (215)
T ss_dssp ---------CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHH
T ss_pred hhcccccccHHHHHHHHHHHHHHHHHhChhhccHHHHHHHcCCCcchHHH
Confidence 44566 44678899999844 44 47889999999999998753
No 334
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=26.70 E-value=23 Score=26.99 Aligned_cols=42 Identities=24% Similarity=0.207 Sum_probs=31.5
Q ss_pred CCcccchhhhhcccchHHHHHHHhhhhcCcccccccccccccCC
Q psy10745 151 VRPCDISRQLRVSHGCVSKILSRESNLHNYRLVREEGCFELSDL 194 (197)
Q Consensus 151 ~r~~~isr~l~vshgcVskil~ry~~~~n~~~~~~~~~~~~~~~ 194 (197)
+.-.|||..|++|.-.||++|++..+.+=-.. +.|.+.+.|.
T Consensus 178 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~--~~~~i~i~d~ 219 (227)
T 3d0s_A 178 LTQEEIAQLVGASRETVNKALADFAHRGWIRL--EGKSVLISDS 219 (227)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE--ETTEEEESCH
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe--cCCEEEEcCH
Confidence 45568999999999999999999988775332 3455555543
No 335
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=26.67 E-value=22 Score=27.62 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=27.6
Q ss_pred CCCCChHHHHHHHHHH-----hc---CCCcccchhhhhcccchHHH
Q psy10745 132 GRPLPDVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCVSK 169 (197)
Q Consensus 132 grplp~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcVsk 169 (197)
+++=....|++|++-| ++ ++.-.+||+..+||.|.+-+
T Consensus 37 ~~~~~~~~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~ 82 (255)
T 3g1o_A 37 ARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYF 82 (255)
T ss_dssp ----CCHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHhCCCHHHHHH
Confidence 4566678999999855 34 46889999999999998743
No 336
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.63 E-value=43 Score=24.84 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHh----cCCCcccchhhh-----hcccchHHHHHHHhhhhcCcc
Q psy10745 137 DVVRQRIVELAH----NGVRPCDISRQL-----RVSHGCVSKILSRESNLHNYR 181 (197)
Q Consensus 137 ~~~r~~iv~l~~----~g~r~~~isr~l-----~vshgcVskil~ry~~~~n~~ 181 (197)
...|..|+++.. ..+...||...| .||.+.|...|..+.+.+=-.
T Consensus 17 T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 17 TLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp CHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 367999999875 357788999888 799999999999988776443
No 337
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=26.47 E-value=21 Score=29.23 Aligned_cols=39 Identities=13% Similarity=0.102 Sum_probs=31.5
Q ss_pred HHHHHHHHHh---cCCCcccchhhhhcccchHHHHHHHhhhh
Q psy10745 139 VRQRIVELAH---NGVRPCDISRQLRVSHGCVSKILSRESNL 177 (197)
Q Consensus 139 ~r~~iv~l~~---~g~r~~~isr~l~vshgcVskil~ry~~~ 177 (197)
--.+|+++.. .++...|||+.++++...|+++|....+.
T Consensus 15 r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~ 56 (257)
T 2g7u_A 15 RGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKL 56 (257)
T ss_dssp HHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3457888653 36888999999999999999999877654
No 338
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=26.44 E-value=46 Score=26.07 Aligned_cols=51 Identities=16% Similarity=0.050 Sum_probs=40.6
Q ss_pred CChHHHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhhcCccccccc
Q psy10745 135 LPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNLHNYRLVREE 186 (197)
Q Consensus 135 lp~~~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~~n~~~~~~~ 186 (197)
+....=+-.+.++++| .-...|++|.||...||+-+.+-.+.-+.+|+.-+
T Consensus 10 m~l~~L~~f~~v~~~g-s~s~AA~~L~isq~avS~~I~~LE~~lg~~Lf~R~ 60 (310)
T 2esn_A 10 LDLNLLLVFDALYRHR-NVGTAASELAISASAFSHALGRLRQGLDDELFLRQ 60 (310)
T ss_dssp SCTTHHHHHHHHHHHS-SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEEEE
T ss_pred cCHHHHHHHHHHHHcC-CHHHHHHHhCCChHHHHHHHHHHHHhhCCcceeec
Confidence 3334445667778777 77788999999999999999999998888887543
No 339
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=26.35 E-value=37 Score=25.24 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=25.6
Q ss_pred hHHHHHHHHHH-----hc---CCCcccchhhhhcccchHH
Q psy10745 137 DVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 137 ~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcVs 168 (197)
...|++|++-| ++ ++...|||+..+||.|.+-
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY 49 (210)
T 2xdn_A 10 QETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIY 49 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHCCChHHHH
Confidence 46788998754 34 5788999999999999884
No 340
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=26.22 E-value=16 Score=29.22 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=23.9
Q ss_pred CCcccchhhhhcccchHHHHHHHhhh
Q psy10745 151 VRPCDISRQLRVSHGCVSKILSRESN 176 (197)
Q Consensus 151 ~r~~~isr~l~vshgcVskil~ry~~ 176 (197)
+...++|+.|+||.+.||+.|.+-.+
T Consensus 28 ~s~s~aA~~L~isq~avSr~I~~LE~ 53 (230)
T 3cta_A 28 LTSSKLADMLGISQQSASRIIIDLEK 53 (230)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56889999999999999999999877
No 341
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=26.16 E-value=19 Score=25.99 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=22.0
Q ss_pred HHHHHHHHH-----Hhc---CCCcccchhhhhcccchHH
Q psy10745 138 VVRQRIVEL-----AHN---GVRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 138 ~~r~~iv~l-----~~~---g~r~~~isr~l~vshgcVs 168 (197)
+.|++|++= +++ ++...+||+..+||.|.+-
T Consensus 2 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 40 (194)
T 3bqz_B 2 NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLY 40 (194)
T ss_dssp --CHHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCCchhHH
Confidence 456667653 344 4788899999999999874
No 342
>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ...
Probab=26.02 E-value=46 Score=27.40 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=30.3
Q ss_pred CCcCCHHHHHHHHHHHHhCCCcchHHhHHHHHhcCC
Q psy10745 31 PKVATAPVVDAIASYKRENPTMFAWEIRDRLLAEGI 66 (197)
Q Consensus 31 pk~~tp~v~~~I~~~k~e~P~iFaWEIRdrLl~~Gv 66 (197)
.+.++|-|...+.-+++.+|.+...|||+.|++-..
T Consensus 219 TS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~ 254 (274)
T 1r0r_E 219 TSMASPHVAGAAALILSKHPNLSASQVRNRLSSTAT 254 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCc
Confidence 457788888888888889999999999999987643
No 343
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=25.97 E-value=33 Score=24.80 Aligned_cols=36 Identities=28% Similarity=0.296 Sum_probs=27.9
Q ss_pred CCChHHHHHHHHHH-----hcC---CCcccchhhhhcccchHHH
Q psy10745 134 PLPDVVRQRIVELA-----HNG---VRPCDISRQLRVSHGCVSK 169 (197)
Q Consensus 134 plp~~~r~~iv~l~-----~~g---~r~~~isr~l~vshgcVsk 169 (197)
.=+...|++|++-| ++| +...+||+..+||.|.+-.
T Consensus 13 ~~~~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~ 56 (206)
T 3kz9_A 13 LSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFN 56 (206)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhCCCHHHHHH
Confidence 34567899999854 455 6688999999999998743
No 344
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=25.97 E-value=29 Score=25.73 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHh-----c---CCCcccchhhhhcccchHH
Q psy10745 137 DVVRQRIVELAH-----N---GVRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 137 ~~~r~~iv~l~~-----~---g~r~~~isr~l~vshgcVs 168 (197)
...|++|++-|. + |+.-.|||+..+||.|.+-
T Consensus 9 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gtlY 48 (194)
T 2nx4_A 9 DERRRSITAAAWRLIAARGIEAANMRDIATEAGYTNGALS 48 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHH
Confidence 456889998654 3 6788999999999999873
No 345
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=25.84 E-value=22 Score=25.54 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHH-----hc---CCCcccchhhhhcccchHH
Q psy10745 136 PDVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 136 p~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcVs 168 (197)
....|++|++-| ++ ++...+||+..+||.|.+-
T Consensus 8 ~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 48 (196)
T 3col_A 8 DMNKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVY 48 (196)
T ss_dssp --CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHH
Confidence 457888888754 34 4889999999999999874
No 346
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=25.83 E-value=32 Score=25.41 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=24.8
Q ss_pred hHHHHHHHHHH-----hcC---CCcccchhhhhcccchHH
Q psy10745 137 DVVRQRIVELA-----HNG---VRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 137 ~~~r~~iv~l~-----~~g---~r~~~isr~l~vshgcVs 168 (197)
...|++|++=| ++| +...|||+..+||.|.+=
T Consensus 8 ~~~r~~Il~aA~~lf~~~G~~~~t~~~Ia~~Agvs~gt~Y 47 (204)
T 3anp_C 8 KRRRERIFRAAMELFRNRGFQETTATEIAKAAHVSRGTFF 47 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCchHHHH
Confidence 35678888743 455 678999999999999873
No 347
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=25.82 E-value=16 Score=30.01 Aligned_cols=39 Identities=8% Similarity=0.082 Sum_probs=31.4
Q ss_pred HHHHHHHHh---cCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 140 RQRIVELAH---NGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 140 r~~iv~l~~---~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
-.+|+++.. .++...|||+.++++...|+++|.-..+.+
T Consensus 25 ~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~G 66 (260)
T 2o0y_A 25 VIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCARS 66 (260)
T ss_dssp HHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 346777643 478999999999999999999998776543
No 348
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=25.58 E-value=9.1 Score=28.13 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.8
Q ss_pred HhcCCCcccchhhhhcccchHHHHHHH
Q psy10745 147 AHNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 147 ~~~g~r~~~isr~l~vshgcVskil~r 173 (197)
.+.|+.-.++|+.++||..-||++-+-
T Consensus 2 R~~glTQ~eLA~~~Gvs~~~is~~E~G 28 (122)
T 1nr3_A 2 RERGWSQKKIARELKTTRQNVSAIERK 28 (122)
T ss_dssp CCCSCSSCSTHHHHHHCCSSSCCHHHH
T ss_pred cccCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 347899999999999999999998765
No 349
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=25.56 E-value=30 Score=29.72 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=31.3
Q ss_pred hcCCCcccchhhhhcccchHHHHHHHhhhhcCccccccccc
Q psy10745 148 HNGVRPCDISRQLRVSHGCVSKILSRESNLHNYRLVREEGC 188 (197)
Q Consensus 148 ~~g~r~~~isr~l~vshgcVskil~ry~~~~n~~~~~~~~~ 188 (197)
+..+...|||+++++|...||+|+++.-+.+ ++.|.|.
T Consensus 31 ~~~~sr~~la~~~gls~~tv~~~v~~L~~~g---li~~~~~ 68 (380)
T 2hoe_A 31 KSPVSRVELAEELGLTKTTVGEIAKIFLEKG---IVVEEKD 68 (380)
T ss_dssp HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHT---SEEEEEC
T ss_pred cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC---CEEeecC
Confidence 5668889999999999999999999988764 5555543
No 350
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=25.52 E-value=24 Score=26.44 Aligned_cols=29 Identities=21% Similarity=0.099 Sum_probs=25.1
Q ss_pred CCcccchhhhhcccchHHHHHHHhhhhcC
Q psy10745 151 VRPCDISRQLRVSHGCVSKILSRESNLHN 179 (197)
Q Consensus 151 ~r~~~isr~l~vshgcVskil~ry~~~~n 179 (197)
+.-.|||..|++|.-.||++|++..+.+=
T Consensus 140 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~ 168 (195)
T 3b02_A 140 VSHEEIADATASIRESVSKVLADLRREGL 168 (195)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCC
Confidence 34578999999999999999999988764
No 351
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=25.51 E-value=28 Score=27.50 Aligned_cols=43 Identities=12% Similarity=0.145 Sum_probs=34.9
Q ss_pred HHHHHhcCCCcccchhhhhcccchHHHHHHHhhhhcCccccccc
Q psy10745 143 IVELAHNGVRPCDISRQLRVSHGCVSKILSRESNLHNYRLVREE 186 (197)
Q Consensus 143 iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~~n~~~~~~~ 186 (197)
.+.++++| .-...|++|+||..-||+-|.+-.+.-+.+|+.-+
T Consensus 10 f~~v~~~g-s~t~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~ 52 (305)
T 3fxq_A 10 LICIEEVG-SLRAAAQLLHLSQPALSAAIQQLEDELKAPLLVRT 52 (305)
T ss_dssp HHHHHHHS-CHHHHHHHTTCCHHHHHHHHHHHHHHHTSCSEEEC
T ss_pred HHHHHHcC-CHHHHHHHhCCCHHHHHHHHHHHHHHhCCeeEEec
Confidence 44556666 56677999999999999999999999888887543
No 352
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=25.46 E-value=36 Score=24.92 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=26.8
Q ss_pred CCChHHHHHHHHHH-----hcC---CCcccchhhhhcccchHH
Q psy10745 134 PLPDVVRQRIVELA-----HNG---VRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 134 plp~~~r~~iv~l~-----~~g---~r~~~isr~l~vshgcVs 168 (197)
+-+...|.+|++-| ++| +.-.+||+..+||.|.+-
T Consensus 10 ~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y 52 (212)
T 3knw_A 10 KKSEAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFY 52 (212)
T ss_dssp --CHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHHH
Confidence 44668899999854 445 678899999999999874
No 353
>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A
Probab=25.45 E-value=76 Score=29.95 Aligned_cols=57 Identities=23% Similarity=0.213 Sum_probs=40.1
Q ss_pred CCcCCHHHHHHHHHHHHhCCCcchHHhHHHHHhcCC---CCCCCCCC---ccccccccccccC
Q psy10745 31 PKVATAPVVDAIASYKRENPTMFAWEIRDRLLAEGI---CSQDNVPS---VSSINRYITYVPI 87 (197)
Q Consensus 31 pk~~tp~v~~~I~~~k~e~P~iFaWEIRdrLl~~Gv---C~~~~vPS---vSSI~Rilr~~~i 87 (197)
.+-++|-|+..+.-+++.+|++...|||+.|+.--. .+...+|. ..+-|+++.+.+.
T Consensus 233 TSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~~i~~~~~p~~~~~~tpN~l~~~~~~ 295 (546)
T 2qtw_B 233 TSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDVINEAWFPEDQRVLTPNLVAALPPS 295 (546)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEESCSCGGGSCHHHHTTSCCEECCCCCT
T ss_pred CcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccccCCccCccccCCCCccchhccCCc
Confidence 456778888888888889999999999999987433 22222332 3466887776543
No 354
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=25.44 E-value=25 Score=26.88 Aligned_cols=29 Identities=7% Similarity=-0.016 Sum_probs=24.9
Q ss_pred CCcccchhhhhcccchHHHHHHHhhhhcC
Q psy10745 151 VRPCDISRQLRVSHGCVSKILSRESNLHN 179 (197)
Q Consensus 151 ~r~~~isr~l~vshgcVskil~ry~~~~n 179 (197)
+.-.+||..|++|.-.||++|++..+.+=
T Consensus 181 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~ 209 (232)
T 2gau_A 181 LSREELATLSNMTVSNAIRTLSTFVSERM 209 (232)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCCC
Confidence 34568899999999999999999987763
No 355
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=25.41 E-value=29 Score=25.90 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHh-----c---CCCcccchhhhhcccchH
Q psy10745 137 DVVRQRIVELAH-----N---GVRPCDISRQLRVSHGCV 167 (197)
Q Consensus 137 ~~~r~~iv~l~~-----~---g~r~~~isr~l~vshgcV 167 (197)
...|++|++-|. + ++.-.|||+..+||.|.+
T Consensus 11 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tl 49 (200)
T 2hyj_A 11 QATRGRILGRAAEIASEEGLDGITIGRLAEELEMSKSGV 49 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHH
T ss_pred hccHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHH
Confidence 568899987553 3 688999999999999998
No 356
>4fcy_A Transposase; rnaseh, DDE transposase, DNA binding protein-DNA complex; HET: DNA; 3.71A {Enterobacteria phage MU} PDB: 2ezk_A 2ezl_A 2ezh_A 2ezi_A
Probab=25.32 E-value=28 Score=30.94 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=35.2
Q ss_pred cCCHHHHHHHHHHH--HhCCCcch--HHhHHHHHhcCCCCCCCCCCcccccccccc
Q psy10745 33 VATAPVVDAIASYK--RENPTMFA--WEIRDRLLAEGICSQDNVPSVSSINRYITY 84 (197)
Q Consensus 33 ~~tp~v~~~I~~~k--~e~P~iFa--WEIRdrLl~~GvC~~~~vPSvSSI~Rilr~ 84 (197)
...+++.+.|..+. .+.|++.. .++...+.++|+ .+||.+++.|+++.
T Consensus 103 ~~~~~~~~~i~~~yl~~~~~s~~~~~~~~~~~~~~~g~----~~PS~~tv~r~l~~ 154 (529)
T 4fcy_A 103 EFDEDAWQFLIADYLRPEKPAFRKCYERLELAAREHGW----SIPSRATAFRRIQQ 154 (529)
T ss_dssp CCCHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHTC----CCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHHcCC----CCCCHHHHHHHHHh
Confidence 45677888777753 44566654 367888888887 57999999999864
No 357
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=25.31 E-value=26 Score=26.79 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=33.5
Q ss_pred HHHHHhcCCCcccchhhhhcccchHHHHHHHhhhhcCccccccc
Q psy10745 143 IVELAHNGVRPCDISRQLRVSHGCVSKILSRESNLHNYRLVREE 186 (197)
Q Consensus 143 iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~~n~~~~~~~ 186 (197)
.+.++++| .-...|++|.||..-||+-|.+-.+.-+.+|+.-+
T Consensus 9 f~~v~~~~-s~t~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~ 51 (291)
T 3szp_A 9 FRLVVENG-SYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRH 51 (291)
T ss_dssp HHHHHHHS-SHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred HHHHHhcC-CHHHHHHHhCCCHHHHHHHHHHHHHHhCCceEeec
Confidence 34444444 45678999999999999999999999888887543
No 358
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=25.24 E-value=23 Score=25.57 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=25.5
Q ss_pred hHHHHHHHHHH-----hc---CCCcccchhhhhcccchHHH
Q psy10745 137 DVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCVSK 169 (197)
Q Consensus 137 ~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcVsk 169 (197)
...|++|++-| ++ ++.-.+||+..+||.|.+-+
T Consensus 7 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 47 (206)
T 3dew_A 7 ADCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISY 47 (206)
T ss_dssp -CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCcccCcHHHHHHHhCCCHHHHHH
Confidence 45788888754 44 57889999999999998743
No 359
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=25.22 E-value=22 Score=24.67 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=18.8
Q ss_pred cccchhhhhcccchHHHHHHH
Q psy10745 153 PCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 153 ~~~isr~l~vshgcVskil~r 173 (197)
-.++|+.|+||...|||-+..
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 678999999999999998764
No 360
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=25.21 E-value=24 Score=26.91 Aligned_cols=41 Identities=22% Similarity=0.222 Sum_probs=30.5
Q ss_pred CCcccchhhhhcccchHHHHHHHhhhhcCcccccccccccccC
Q psy10745 151 VRPCDISRQLRVSHGCVSKILSRESNLHNYRLVREEGCFELSD 193 (197)
Q Consensus 151 ~r~~~isr~l~vshgcVskil~ry~~~~n~~~~~~~~~~~~~~ 193 (197)
+.-.+||..|++|.-.||++|++..+.+=-.. +.+.+...|
T Consensus 176 ~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~--~~~~i~i~d 216 (231)
T 3e97_A 176 LGTQDIMARTSSSRETVSRVLKRLEAHNILEV--SPRSVTLLD 216 (231)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--CSSCEEESC
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEe--cCCEEEEeC
Confidence 45688999999999999999999988764332 234444444
No 361
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=25.16 E-value=31 Score=26.39 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=27.6
Q ss_pred CCCCCChHHHHHHHHHH-----hcC---CCcccchhhhhcccchHH
Q psy10745 131 NGRPLPDVVRQRIVELA-----HNG---VRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 131 ngrplp~~~r~~iv~l~-----~~g---~r~~~isr~l~vshgcVs 168 (197)
.+++=....|++|++-| ++| +.-.+||+..+||.|.+-
T Consensus 37 ~~~~~~~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~~tlY 82 (236)
T 3q0w_A 37 TARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFY 82 (236)
T ss_dssp -----CHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCcHHHHH
Confidence 45667789999999854 455 688999999999999874
No 362
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=25.15 E-value=28 Score=26.03 Aligned_cols=32 Identities=22% Similarity=0.555 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHHh-----c---CCCcccchhhhhcccchH
Q psy10745 136 PDVVRQRIVELAH-----N---GVRPCDISRQLRVSHGCV 167 (197)
Q Consensus 136 p~~~r~~iv~l~~-----~---g~r~~~isr~l~vshgcV 167 (197)
....|++|++-|. + ++...+||+..+||+|.+
T Consensus 10 ~~~tr~~Il~aA~~l~~e~G~~~~s~~~IA~~agvs~~t~ 49 (198)
T 3cjd_A 10 KAALREKLIDLAEAQIEAEGLASLRARELARQADCAVGAI 49 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCChhhcCHHHHHHHhCCCccHH
Confidence 4568889998554 3 578899999999999987
No 363
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=25.04 E-value=15 Score=29.59 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHhcCCCcccchhhhhcccchHHHHHHHhhhhcCccccccc
Q psy10745 143 IVELAHNGVRPCDISRQLRVSHGCVSKILSRESNLHNYRLVREE 186 (197)
Q Consensus 143 iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~~n~~~~~~~ 186 (197)
.+.++++|..-...|++|.||..-||+-+.+-.+.-+.+|+.-+
T Consensus 9 F~~v~~~gls~s~AA~~L~isq~avS~~I~~LE~~lg~~Lf~R~ 52 (324)
T 1al3_A 9 IVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFARS 52 (324)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHcccCHHHHHHHhCCCchHHHHHHHHHHHHhCCEEEEEC
Confidence 45667777677888999999999999999998888888877554
No 364
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=25.03 E-value=13 Score=29.24 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=16.7
Q ss_pred cCCHHHHHH----HHHHHHhCCCcchH
Q psy10745 33 VATAPVVDA----IASYKRENPTMFAW 55 (197)
Q Consensus 33 ~~tp~v~~~----I~~~k~e~P~iFaW 55 (197)
.+.++++++ ..++++.||++-.|
T Consensus 11 dtL~~IA~~f~~g~~~l~~aNp~vd~~ 37 (165)
T 4a1k_A 11 DTLNSIAADFRISTAALLQANPSLQAG 37 (165)
T ss_dssp CCHHHHHHHTTCCHHHHHHHCGGGGGC
T ss_pred CCHHHHHHHhCCCHHHHHHhCccCCCc
Confidence 345666665 67788999988777
No 365
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=25.00 E-value=31 Score=25.06 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=26.3
Q ss_pred ChHHHHHHHHHH-----hc---CCCcccchhhhhcccchHH
Q psy10745 136 PDVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 136 p~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcVs 168 (197)
....|++|++-| ++ ++...+||+..+||.|.+-
T Consensus 9 ~~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y 49 (203)
T 3b81_A 9 FNNKRTELANKIWDIFIANGYENTTLAFIINKLGISKGALY 49 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCchhHH
Confidence 457889998754 44 4788999999999999873
No 366
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=25.00 E-value=23 Score=26.08 Aligned_cols=32 Identities=9% Similarity=0.230 Sum_probs=25.7
Q ss_pred hHHHHHHHH-----HHhcC---CCcccchhhhhcccchHH
Q psy10745 137 DVVRQRIVE-----LAHNG---VRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 137 ~~~r~~iv~-----l~~~g---~r~~~isr~l~vshgcVs 168 (197)
...|.+|++ ++++| +...+||+..+||.|.+-
T Consensus 16 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 55 (207)
T 2rae_A 16 STTQDRISTVGIELFTEQGFDATSVDEVAEASGIARRTLF 55 (207)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHH
T ss_pred HhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcchHh
Confidence 578999998 44555 678999999999999764
No 367
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=24.92 E-value=34 Score=25.37 Aligned_cols=31 Identities=26% Similarity=0.234 Sum_probs=25.0
Q ss_pred hHHHHHHHHHH-----hc---CCCcccchhhhhcccchH
Q psy10745 137 DVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCV 167 (197)
Q Consensus 137 ~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcV 167 (197)
...|++|++=| ++ ++.-.|||+..+||.|.+
T Consensus 11 ~~~r~~Il~aA~~lf~~~Gy~~ts~~~IA~~agvs~gtl 49 (205)
T 1rkt_A 11 DKRQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGGV 49 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCcchh
Confidence 45788888754 44 578899999999999987
No 368
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=24.88 E-value=31 Score=25.19 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=23.6
Q ss_pred HHHHHHHHHH-----hc---CCCcccchhhhhcccchHH
Q psy10745 138 VVRQRIVELA-----HN---GVRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 138 ~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcVs 168 (197)
..|++|++-| ++ ++...|||+..+||.|.+=
T Consensus 3 ~tr~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~t~Y 41 (190)
T 3vpr_A 3 TTRDRILEEAAKLFTEKGYEATSVQDLAQALGLSKAALY 41 (190)
T ss_dssp CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHH
T ss_pred chHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHH
Confidence 3577777643 44 5677899999999999873
No 369
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=24.81 E-value=27 Score=26.04 Aligned_cols=33 Identities=9% Similarity=0.245 Sum_probs=25.9
Q ss_pred ChHHHHHHHH-----HHhcC--CCcccchhhhhcccchHH
Q psy10745 136 PDVVRQRIVE-----LAHNG--VRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 136 p~~~r~~iv~-----l~~~g--~r~~~isr~l~vshgcVs 168 (197)
....|.+|++ ++++| +...+||+..+||.|.|-
T Consensus 10 ~~~~r~~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~tiY 49 (224)
T 1t33_A 10 GEQAKSQLIAAALAQFGEYGLHATTRDIAALAGQNIAAIT 49 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHTSCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCccccHHHHHHHhCCCHHHHH
Confidence 3567888887 34556 778899999999999884
No 370
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=24.66 E-value=27 Score=25.53 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=27.1
Q ss_pred CChHHHHHHHHHHh-----c---CCCcccchhhhhcccchHH
Q psy10745 135 LPDVVRQRIVELAH-----N---GVRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 135 lp~~~r~~iv~l~~-----~---g~r~~~isr~l~vshgcVs 168 (197)
-....|++|++-|. + ++...+||+..+||.|.+-
T Consensus 13 ~~~~~r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y 54 (213)
T 2qtq_A 13 ETPGARDLLLQTASNIMREGDVVDISLSELSLRSGLNSALVK 54 (213)
T ss_dssp CCTTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCChhhHh
Confidence 34578999987553 3 5788999999999999874
No 371
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=24.58 E-value=19 Score=26.13 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=25.9
Q ss_pred ChHHHHHHHHHH-----hc---CCCcccchhhhhcccchHH
Q psy10745 136 PDVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 136 p~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcVs 168 (197)
....|.+|++-| ++ ++...+||+..+||.|.+-
T Consensus 5 ~~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y 45 (199)
T 3qbm_A 5 GQETRERVVAQAAALFNVSGYAGTAISDIMAATGLEKGGIY 45 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhCcCcCCHHHHHHHhCCCccHHH
Confidence 356788888754 33 5778999999999999874
No 372
>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A*
Probab=24.58 E-value=52 Score=27.13 Aligned_cols=50 Identities=30% Similarity=0.306 Sum_probs=37.2
Q ss_pred CCcCCHHHHHHHHHHHHhCCCcchHHhHHHHHhcCCCCCCCCCCccccccccccccCCCCCCc
Q psy10745 31 PKVATAPVVDAIASYKRENPTMFAWEIRDRLLAEGICSQDNVPSVSSINRYITYVPIGHGGVN 93 (197)
Q Consensus 31 pk~~tp~v~~~I~~~k~e~P~iFaWEIRdrLl~~GvC~~~~vPSvSSI~Rilr~~~iGhG~vn 93 (197)
.+.++|-|...+.-+++.+|++...|||+.|+.-..-. . ....+|+|.+|
T Consensus 214 TS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~-----g--------~~~~~G~G~vn 263 (269)
T 1gci_A 214 TSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSL-----G--------STNLYGSGLVN 263 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCC-----S--------CHHHHTTCBCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccC-----C--------CCCCcccCccC
Confidence 45678888888888888999999999999998754322 0 12347888877
No 373
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=24.48 E-value=42 Score=25.31 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=29.6
Q ss_pred HHHHHHHhcC---CCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 141 QRIVELAHNG---VRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 141 ~~iv~l~~~g---~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
+=++.||.++ +...+||.+++||..-|.|||..-.+.+
T Consensus 18 ~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~G 58 (149)
T 1ylf_A 18 HILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAG 58 (149)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3456667532 6677899999999999999999887754
No 374
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=24.35 E-value=33 Score=25.15 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=26.9
Q ss_pred CChHHHHHHHHH-----HhcC---CCcccchhhhhcccchHH
Q psy10745 135 LPDVVRQRIVEL-----AHNG---VRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 135 lp~~~r~~iv~l-----~~~g---~r~~~isr~l~vshgcVs 168 (197)
=....|.+|++= +++| +.-.+||+..+||.|.+-
T Consensus 23 ~~~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y 64 (217)
T 3mvp_A 23 RSIEKRNKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTLY 64 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCChhHHH
Confidence 356788999874 4455 788999999999999874
No 375
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=24.16 E-value=32 Score=26.17 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHH-----hcC---CCcccchhhhhcccchHHH
Q psy10745 136 PDVVRQRIVELA-----HNG---VRPCDISRQLRVSHGCVSK 169 (197)
Q Consensus 136 p~~~r~~iv~l~-----~~g---~r~~~isr~l~vshgcVsk 169 (197)
....|.+|++-| ++| +...+||+..+||.|.+-.
T Consensus 38 ~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~ 79 (225)
T 2id3_A 38 TARIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYR 79 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHH
Confidence 456889999744 444 8899999999999998754
No 376
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.14 E-value=41 Score=24.77 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=29.2
Q ss_pred HHHHHHH-HHhCCCcchHHhHHHHHhcCCCCCCCCCCcccccccccc
Q psy10745 39 VDAIASY-KRENPTMFAWEIRDRLLAEGICSQDNVPSVSSINRYITY 84 (197)
Q Consensus 39 ~~~I~~~-k~e~P~iFaWEIRdrLl~~GvC~~~~vPSvSSI~Rilr~ 84 (197)
...|.++ .....-+.|-||=++|.+++--. |.++++|.|.-
T Consensus 13 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i-----s~~TVYR~L~~ 54 (131)
T 2o03_A 13 RAAISTLLETLDDFRSAQELHDELRRRGENI-----GLTTVYRTLQS 54 (131)
T ss_dssp HHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC-----CHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC-----CHhhHHHHHHH
Confidence 3344444 33445699999999998876433 88999999974
No 377
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=23.88 E-value=23 Score=24.53 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=25.2
Q ss_pred HHHHHH-hcCCCcccchhhhhcccchHHHHHH
Q psy10745 142 RIVELA-HNGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 142 ~iv~l~-~~g~r~~~isr~l~vshgcVskil~ 172 (197)
+|-++. +.|+.-.++|+.++||...||++-+
T Consensus 34 ~lk~~R~~~glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 34 RIKIIRRALKLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 444444 5799999999999999999998854
No 378
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=23.87 E-value=24 Score=25.75 Aligned_cols=33 Identities=15% Similarity=0.359 Sum_probs=23.0
Q ss_pred ChHHHHHHHHH-----HhcC---CCcccchhhhhcccchHH
Q psy10745 136 PDVVRQRIVEL-----AHNG---VRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 136 p~~~r~~iv~l-----~~~g---~r~~~isr~l~vshgcVs 168 (197)
|.+.|.+|++- +++| +.-.+||+..+||.|.+-
T Consensus 5 ~~~~~~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY 45 (192)
T 2zcm_A 5 HHHMKDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLY 45 (192)
T ss_dssp ---CHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHHH
Confidence 34556677763 4455 678899999999999884
No 379
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=23.86 E-value=29 Score=26.27 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=34.2
Q ss_pred CCChHHHHHHHHHHhcC----CCcccchhhhh---cccchHHHHHHHhhh
Q psy10745 134 PLPDVVRQRIVELAHNG----VRPCDISRQLR---VSHGCVSKILSRESN 176 (197)
Q Consensus 134 plp~~~r~~iv~l~~~g----~r~~~isr~l~---vshgcVskil~ry~~ 176 (197)
.|...+ .+|+++..+| +...+||+.|. +|...|+.-+.|-++
T Consensus 145 ~Lt~rE-~~vl~~l~~~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~ 193 (220)
T 1p2f_A 145 HLPKKE-FEILLFLAENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRK 193 (220)
T ss_dssp CCCHHH-HHHHHHHHHTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHH
T ss_pred ecCHHH-HHHHHHHHHCCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 366555 6788988888 99999999999 999999997666554
No 380
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=23.85 E-value=23 Score=24.97 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=28.1
Q ss_pred HHHHHHHHHH-hcCCCcccchhhhhcccchHHHHHH
Q psy10745 138 VVRQRIVELA-HNGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 138 ~~r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~ 172 (197)
..-.+|-++. ..|+.-.++|+.++||..-||+|.+
T Consensus 28 ~~g~~l~~~R~~~glsq~~lA~~~gis~~~is~~E~ 63 (117)
T 3f52_A 28 ALGAALRSFRADKGVTLRELAEASRVSPGYLSELER 63 (117)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4445555554 5799999999999999999999865
No 381
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=23.77 E-value=39 Score=24.57 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHH-----hcC---CCcccchhhhhcccchHHH
Q psy10745 136 PDVVRQRIVELA-----HNG---VRPCDISRQLRVSHGCVSK 169 (197)
Q Consensus 136 p~~~r~~iv~l~-----~~g---~r~~~isr~l~vshgcVsk 169 (197)
....|++|++-| ++| +...+||+..+||.|.+-+
T Consensus 12 ~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 53 (220)
T 3lhq_A 12 ALETRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYW 53 (220)
T ss_dssp SHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCceeehh
Confidence 346788888744 455 6789999999999998754
No 382
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=23.67 E-value=27 Score=25.37 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=25.7
Q ss_pred ChHHHHHHHHHH-----hc---CCCcccchhhhhcccchH
Q psy10745 136 PDVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCV 167 (197)
Q Consensus 136 p~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcV 167 (197)
....|.+|++-| ++ ++.-.+||+..+||.|.+
T Consensus 9 ~~~~r~~Il~aA~~lf~~~G~~~~ti~~IA~~agvs~~t~ 48 (204)
T 3eup_A 9 SDRTRQFIIESTAPVFNVKGLAGTSLTDLTEATNLTKGSI 48 (204)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcHHH
Confidence 457788888754 33 578999999999999986
No 383
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=23.56 E-value=36 Score=26.74 Aligned_cols=48 Identities=17% Similarity=0.108 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCCcccchhhhhcccchHHHHHHHhhhhcCcccccccc
Q psy10745 139 VRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNLHNYRLVREEG 187 (197)
Q Consensus 139 ~r~~iv~l~~~g~r~~~isr~l~vshgcVskil~ry~~~~n~~~~~~~~ 187 (197)
.=+-.+.++++| .-...|++|.||..-||+-|.+-.+.-+.+|+.-++
T Consensus 10 ~L~~f~~v~~~g-s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~ 57 (303)
T 3isp_A 10 QLAALAAVVELG-SFDAAAERLHVTPSAVSQRIKSLEQQVGQVLVVREK 57 (303)
T ss_dssp HHHHHHHHHHHT-CHHHHHTTTTCCHHHHHHHHHHHHHHHTSCCEECSS
T ss_pred HHHHHHHHHHcC-CHHHHHHHhCCChHHHHHHHHHHHHHhCCeeEEcCC
Confidence 334456666666 566779999999999999999999999999876544
No 384
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=23.54 E-value=49 Score=27.00 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=26.3
Q ss_pred cCCC-CCChHHHHHHHHHH-hcCCCcccchhhhh
Q psy10745 130 VNGR-PLPDVVRQRIVELA-HNGVRPCDISRQLR 161 (197)
Q Consensus 130 ~ngr-plp~~~r~~iv~l~-~~g~r~~~isr~l~ 161 (197)
+||+ .+++++|+||.+.+ +.|-+|...||.|.
T Consensus 31 Ln~~~~vs~~tr~rV~~~~~~lgY~pn~~a~~l~ 64 (344)
T 3kjx_A 31 LRNRGDVSDATRARVLAAAKELGYVPNKIAGALA 64 (344)
T ss_dssp HTTCSCCCHHHHHHHHHHHHHHTCCCCCCCSCST
T ss_pred HcCCCCCCHHHHHHHHHHHHHhCCCCCHHHHHhh
Confidence 3444 58999999999987 57999999988774
No 385
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=23.21 E-value=26 Score=29.21 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=32.7
Q ss_pred HHHHHH-HHHhcCCCcccchhhhhcccchHHHHHHHhhhhc
Q psy10745 139 VRQRIV-ELAHNGVRPCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 139 ~r~~iv-~l~~~g~r~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
.+..|+ .|++.+..+.+||+.++++..-|+..|++-.+.+
T Consensus 166 ~~~~l~~~l~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~ 206 (232)
T 2qlz_A 166 QLAILHYLLLNGRATVEELSDRLNLKEREVREKISEMARFV 206 (232)
T ss_dssp HHHHHHHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcC
Confidence 455554 4566888999999999999999999999987654
No 386
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=23.14 E-value=36 Score=24.27 Aligned_cols=33 Identities=9% Similarity=0.221 Sum_probs=25.9
Q ss_pred ChHHHHHHHHHH-----hc---CCCcccchhhhhcccchHH
Q psy10745 136 PDVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 136 p~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcVs 168 (197)
....|.+|++=| ++ ++...|||+..+||.|.+-
T Consensus 6 ~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 46 (188)
T 3qkx_A 6 KTDLAEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIY 46 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHH
Confidence 356788888754 44 4778999999999999874
No 387
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=22.93 E-value=35 Score=25.68 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHh--------cCCCcccchhhhhcccchHH
Q psy10745 137 DVVRQRIVELAH--------NGVRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 137 ~~~r~~iv~l~~--------~g~r~~~isr~l~vshgcVs 168 (197)
...|++|++-|. .++...+||+..+||.|.|=
T Consensus 23 ~~~r~~Il~aA~~lf~e~G~~~~s~~~IA~~aGvskgtlY 62 (214)
T 2oer_A 23 SELVASILEAAVQVLASEGAQRFTTARVAERAGVSIGSLY 62 (214)
T ss_dssp CHHHHHHHHHHHHC------CCCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCCCchHH
Confidence 467899998764 36788999999999999873
No 388
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=22.85 E-value=25 Score=26.35 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=25.2
Q ss_pred hHHHHHHHHHH-----hc---CCCcccchhhhhcccchHH
Q psy10745 137 DVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 137 ~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcVs 168 (197)
...|++|++-| ++ ++.-.|||+..+||.|.+-
T Consensus 7 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tiY 46 (202)
T 2d6y_A 7 EATKARIFEAAVAEFARHGIAGARIDRIAAEARANKQLIY 46 (202)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHH
Confidence 35788888744 44 4788999999999999874
No 389
>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...
Probab=22.68 E-value=56 Score=27.06 Aligned_cols=50 Identities=20% Similarity=0.175 Sum_probs=36.9
Q ss_pred CCcCCHHHHHHHHHHHHhCCCcchHHhHHHHHhcCCCCCCCCCCccccccccccccCCCCCCc
Q psy10745 31 PKVATAPVVDAIASYKRENPTMFAWEIRDRLLAEGICSQDNVPSVSSINRYITYVPIGHGGVN 93 (197)
Q Consensus 31 pk~~tp~v~~~I~~~k~e~P~iFaWEIRdrLl~~GvC~~~~vPSvSSI~Rilr~~~iGhG~vn 93 (197)
.+.++|-|...+.-+++.+|++...|||+.|+.-..-. . .+..+|+|.+|
T Consensus 220 TS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~-----g--------~~~~~G~G~v~ 269 (281)
T 1to2_E 220 TSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL-----G--------DSFYYGKGLIN 269 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCC-----S--------CHHHHTTCBCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCccc-----C--------CCCCcccceec
Confidence 45678888888888888999999999999998654322 0 12347888877
No 390
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=22.59 E-value=31 Score=25.60 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=25.4
Q ss_pred hHHHHHHHHHH-----hc---CCCcccchhhhhcccchHH
Q psy10745 137 DVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 137 ~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcVs 168 (197)
...|++|++-| ++ ++...|||+..+||.|.+=
T Consensus 9 ~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~Agvskgt~Y 48 (197)
T 2f07_A 9 SGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFY 48 (197)
T ss_dssp CSHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchHHH
Confidence 46788998754 44 4678999999999999873
No 391
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=22.59 E-value=31 Score=24.73 Aligned_cols=26 Identities=12% Similarity=0.275 Sum_probs=23.3
Q ss_pred HhcCCCcccchhhhhcccchHHHHHH
Q psy10745 147 AHNGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 147 ~~~g~r~~~isr~l~vshgcVskil~ 172 (197)
...|+.-.++|+.++||..-||++.+
T Consensus 33 ~~~gltq~elA~~~gis~~~is~~E~ 58 (111)
T 3mlf_A 33 TDYGLTQKELGDLFKVSSRTIQNMEK 58 (111)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 36799999999999999999999865
No 392
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.57 E-value=65 Score=24.17 Aligned_cols=46 Identities=13% Similarity=-0.042 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHhCCCcchHHhHHHHHhcCCCCCCCCCCcccccccccc
Q psy10745 34 ATAPVVDAIASYKRENPTMFAWEIRDRLLAEGICSQDNVPSVSSINRYITY 84 (197)
Q Consensus 34 ~tp~v~~~I~~~k~e~P~iFaWEIRdrLl~~GvC~~~~vPSvSSI~Rilr~ 84 (197)
.|+.-...+..+.....-+.|-||-++|.+++--. |.++|+|.|.-
T Consensus 20 ~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i-----s~aTVYR~L~~ 65 (145)
T 2fe3_A 20 ITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNM-----SVATVYNNLRV 65 (145)
T ss_dssp CCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC-----CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC-----ChhhHHHHHHH
Confidence 45533333333344445689999999998876433 88899999964
No 393
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=22.52 E-value=29 Score=26.79 Aligned_cols=43 Identities=19% Similarity=0.113 Sum_probs=32.2
Q ss_pred CCcccchhhhhcccchHHHHHHHhhhhcCcccccccccccccCCc
Q psy10745 151 VRPCDISRQLRVSHGCVSKILSRESNLHNYRLVREEGCFELSDLE 195 (197)
Q Consensus 151 ~r~~~isr~l~vshgcVskil~ry~~~~n~~~~~~~~~~~~~~~~ 195 (197)
+.-.|||..|++|.-.||++|.+..+.+=-. .+.|.+.+.|.+
T Consensus 187 ~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~--~~~~~i~I~d~~ 229 (232)
T 1zyb_A 187 VKMDDLARCLDDTRLNISKTLNELQDNGLIE--LHRKEILIPDAQ 229 (232)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSCE--EETTEEEESCGG
T ss_pred CCHHHHHHHhCCChhHHHHHHHHHHHCCCEE--ecCCEEEEeChH
Confidence 4567899999999999999999998876433 234555555543
No 394
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=22.43 E-value=45 Score=24.55 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=26.2
Q ss_pred hHHHHHHHHHH-----hcC---CCcccchhhhhcccchHHH
Q psy10745 137 DVVRQRIVELA-----HNG---VRPCDISRQLRVSHGCVSK 169 (197)
Q Consensus 137 ~~~r~~iv~l~-----~~g---~r~~~isr~l~vshgcVsk 169 (197)
...|.+|++-| ++| +.-.+||+..+||.|.+-+
T Consensus 16 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 56 (218)
T 3gzi_A 16 TQNRDKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRY 56 (218)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHHHHH
Confidence 45889999755 444 6788999999999998743
No 395
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=22.32 E-value=34 Score=24.50 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=24.4
Q ss_pred hHHHHHHHHHH-----hc---CCCcccchhhhhcccchH
Q psy10745 137 DVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCV 167 (197)
Q Consensus 137 ~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcV 167 (197)
...|++|++-| ++ ++...+||+..+||.|.+
T Consensus 5 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~ 43 (191)
T 1sgm_A 5 GDSREKILHTASRLSQLQGYHATGLNQIVKESGAPKGSL 43 (191)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHH
T ss_pred cchHHHHHHHHHHHHHHcCccccCHHHHHHHHCCCchhH
Confidence 45788887644 34 478899999999999987
No 396
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=22.31 E-value=39 Score=24.76 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHH-----hcC---CCcccchhhhhcccchH
Q psy10745 136 PDVVRQRIVELA-----HNG---VRPCDISRQLRVSHGCV 167 (197)
Q Consensus 136 p~~~r~~iv~l~-----~~g---~r~~~isr~l~vshgcV 167 (197)
....|.+|++-| ++| +.-.+||+..+||.|.+
T Consensus 17 ~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tl 56 (216)
T 3qqa_A 17 VLARQEKIKAVALELFLTKGYQETSLSDIIKLSGGSYSNI 56 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTTSCCSS
T ss_pred cHHHHHHHHHHHHHHHHHcChhhCCHHHHHHHhCCCHHHH
Confidence 457788998754 445 67889999999999986
No 397
>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*
Probab=22.31 E-value=60 Score=26.91 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=28.6
Q ss_pred CCcCCHHHHHHHHHHHHhCCCcchHHhHHHHHhc
Q psy10745 31 PKVATAPVVDAIASYKRENPTMFAWEIRDRLLAE 64 (197)
Q Consensus 31 pk~~tp~v~~~I~~~k~e~P~iFaWEIRdrLl~~ 64 (197)
.+.++|-|...+.-+++.+|.+...|||+.|+.-
T Consensus 249 TS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~t 282 (310)
T 2ixt_A 249 TSMATPHVSGLAAKIWAENPSLSNTQLRSNLQER 282 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhh
Confidence 4567787877888888899999999999999874
No 398
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=22.17 E-value=36 Score=24.30 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=26.1
Q ss_pred hHHHHHHHHHH-----hc---CCCcccchhhhhcccchHHH
Q psy10745 137 DVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCVSK 169 (197)
Q Consensus 137 ~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcVsk 169 (197)
...|++|++-| ++ ++...+||+..+||.|.+-+
T Consensus 7 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 47 (194)
T 2g7s_A 7 QSKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHH 47 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchHHHH
Confidence 57888998743 44 57889999999999998743
No 399
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=22.16 E-value=28 Score=25.15 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=25.5
Q ss_pred hHHHHHHHHHH-----hc---CCCcccchhhhhcccchHH
Q psy10745 137 DVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 137 ~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcVs 168 (197)
...|++|++-| ++ ++...+||+..+||.|.+-
T Consensus 6 ~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~tlY 45 (186)
T 2jj7_A 6 EQTMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMAS 45 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChhhhh
Confidence 46788888744 33 4899999999999999884
No 400
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=22.13 E-value=28 Score=24.93 Aligned_cols=32 Identities=16% Similarity=0.344 Sum_probs=25.5
Q ss_pred hHHHHHHHHHH-----hc---CCCcccchhhhhcccchHH
Q psy10745 137 DVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 137 ~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcVs 168 (197)
...|++|++-| ++ ++...+||+..+||.|.+-
T Consensus 9 ~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y 48 (191)
T 3on4_A 9 SNTKERILAVAEALIQKDGYNAFSFKDIATAINIKTASIH 48 (191)
T ss_dssp CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchhh
Confidence 46888888744 44 4788999999999999874
No 401
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=22.09 E-value=19 Score=29.42 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=0.0
Q ss_pred hHHHHHHHHHH-hcCCCcccchhhhhcccchHHHHHHH
Q psy10745 137 DVVRQRIVELA-HNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 137 ~~~r~~iv~l~-~~g~r~~~isr~l~vshgcVskil~r 173 (197)
+....+|-++. +.|+.-.++|+.++||.+.||+|.+-
T Consensus 29 ~~~~~~l~~~r~~~g~t~~~la~~~g~s~~~is~~e~g 66 (311)
T 4ich_A 29 DELRRRVRGLIHSRPGAQREFAAAIGLDESKLSKSLNG 66 (311)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 44556666654 57999999999999999999998764
No 402
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=21.85 E-value=19 Score=26.38 Aligned_cols=53 Identities=8% Similarity=0.085 Sum_probs=42.4
Q ss_pred HHHHHHHHHHh-cCCCcccchhhhhcccchHHHHHHHhhhhcCccccccccccc
Q psy10745 138 VVRQRIVELAH-NGVRPCDISRQLRVSHGCVSKILSRESNLHNYRLVREEGCFE 190 (197)
Q Consensus 138 ~~r~~iv~l~~-~g~r~~~isr~l~vshgcVskil~ry~~~~n~~~~~~~~~~~ 190 (197)
..+++|++... .+..+-|++..++++-.-+.++|....+++-.--+.+...|.
T Consensus 7 ~l~~~i~~~~~~~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~~~~~ 60 (121)
T 2pjp_A 7 AIWQKAEPLFGDEPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRYYR 60 (121)
T ss_dssp HHHHHHGGGCSSSCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETTEEEE
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCceEC
Confidence 45788888775 566778999999999999999999999998776666655543
No 403
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.76 E-value=97 Score=21.44 Aligned_cols=40 Identities=25% Similarity=0.197 Sum_probs=29.7
Q ss_pred CCCC-CCCcCCH--HHHHHHHHHHHhCCCcchHHhHHHHHhcC
Q psy10745 26 IGGS-KPKVATA--PVVDAIASYKRENPTMFAWEIRDRLLAEG 65 (197)
Q Consensus 26 IGGS-Kpk~~tp--~v~~~I~~~k~e~P~iFaWEIRdrLl~~G 65 (197)
.||| +|-..++ ++.+.+.+++.-.|+|-.--|++-|.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~ 45 (67)
T 2dhy_A 3 SGSSGRPARQVRRLEFNQAMDDFKTMFPNMDYDIIECVLRANS 45 (67)
T ss_dssp CSCCCCCCCCCCCCCSHHHHHHHHHHCSSSCHHHHHHHHHHHT
T ss_pred CCCCCCcchhccCCCHHHHHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 3444 4544444 56778888999999999999999997654
No 404
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=21.70 E-value=51 Score=24.95 Aligned_cols=46 Identities=11% Similarity=0.127 Sum_probs=33.8
Q ss_pred cCCC--CCChHHHHHHHHHHhcC----CCcccchhhhh-----cccchHHHHHHHhhh
Q psy10745 130 VNGR--PLPDVVRQRIVELAHNG----VRPCDISRQLR-----VSHGCVSKILSRESN 176 (197)
Q Consensus 130 ~ngr--plp~~~r~~iv~l~~~g----~r~~~isr~l~-----vshgcVskil~ry~~ 176 (197)
.++. .|...+ .+|+++..+| +...+||+.|. +|...|..-+.|-++
T Consensus 153 ~~~~~~~Lt~rE-~~vL~~l~~g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~ 209 (233)
T 1ys7_A 153 VNGVDVDLTKRE-FDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRR 209 (233)
T ss_dssp ETTEECCCCHHH-HHHHHHHHHTTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHH
T ss_pred ECCEEeccCHHH-HHHHHHHHhCCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHH
Confidence 3554 355444 4688998999 99999999999 999999886665443
No 405
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=21.57 E-value=40 Score=27.83 Aligned_cols=31 Identities=39% Similarity=0.543 Sum_probs=17.2
Q ss_pred CCC-CCChHHHHHHHHHH-hcCCC-cccchhhhh
Q psy10745 131 NGR-PLPDVVRQRIVELA-HNGVR-PCDISRQLR 161 (197)
Q Consensus 131 ngr-plp~~~r~~iv~l~-~~g~r-~~~isr~l~ 161 (197)
||+ .+++++|+||.+.+ +.|-+ |...||.|+
T Consensus 31 n~~~~Vs~~tr~rV~~~a~~lgY~~pn~~a~~l~ 64 (366)
T 3h5t_A 31 NRPEQLSAELRQRILDTAEDMGYLGPDPVARSLR 64 (366)
T ss_dssp HCGGGSCHHHHHHHHHHHHHTTC-----------
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHhh
Confidence 444 58999999999988 56998 999998885
No 406
>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}
Probab=21.54 E-value=63 Score=27.28 Aligned_cols=36 Identities=31% Similarity=0.273 Sum_probs=30.4
Q ss_pred CCcCCHHHHHHHHHHHHhCCCcchHHhHHHHHhcCC
Q psy10745 31 PKVATAPVVDAIASYKRENPTMFAWEIRDRLLAEGI 66 (197)
Q Consensus 31 pk~~tp~v~~~I~~~k~e~P~iFaWEIRdrLl~~Gv 66 (197)
.+.++|-|+..+.-+++.+|++...|||+.|++-..
T Consensus 271 TS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~tA~ 306 (347)
T 2iy9_A 271 TSEATAIVSGVLAAMTSCNPRATATELKRTLLESAD 306 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSE
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCc
Confidence 456778888888888899999999999999997654
No 407
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=21.33 E-value=31 Score=26.29 Aligned_cols=29 Identities=14% Similarity=0.008 Sum_probs=25.1
Q ss_pred CCcccchhhhhcccchHHHHHHHhhhhcC
Q psy10745 151 VRPCDISRQLRVSHGCVSKILSRESNLHN 179 (197)
Q Consensus 151 ~r~~~isr~l~vshgcVskil~ry~~~~n 179 (197)
+.-.+||..|++|.-.||++|++..+.+=
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~g~ 192 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKEGY 192 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCc
Confidence 44578999999999999999999987763
No 408
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=21.16 E-value=32 Score=25.37 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHH-----hcC---CCcccchhhhhcccchHH
Q psy10745 136 PDVVRQRIVELA-----HNG---VRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 136 p~~~r~~iv~l~-----~~g---~r~~~isr~l~vshgcVs 168 (197)
+...|++|++-| ++| +...+||+..+||.|.+-
T Consensus 9 ~~~~r~~Il~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y 49 (216)
T 3f0c_A 9 EDGKLELIINAAQKRFAHYGLCKTTMNEIASDVGMGKASLY 49 (216)
T ss_dssp -CCHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCHHHHH
Confidence 356788898744 455 688999999999999874
No 409
>3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria}
Probab=21.05 E-value=60 Score=29.57 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=28.5
Q ss_pred CCcCCHHHHHHHHHHHHhCCCcchHHhHHHHHhc
Q psy10745 31 PKVATAPVVDAIASYKRENPTMFAWEIRDRLLAE 64 (197)
Q Consensus 31 pk~~tp~v~~~I~~~k~e~P~iFaWEIRdrLl~~ 64 (197)
.+-++|-|+-.+.-+++++|++...|||+.|+.-
T Consensus 335 TSmAaP~VAGvaALll~a~P~lt~~~v~~~L~~T 368 (600)
T 3hjr_A 335 TSSATPSTSGAMALLMSAYPDLSVRDLRDLLARS 368 (600)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHCCCCCHHHHHHHHHhh
Confidence 3456787777888888999999999999999874
No 410
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=21.02 E-value=34 Score=25.80 Aligned_cols=27 Identities=11% Similarity=0.261 Sum_probs=24.0
Q ss_pred HhcCCCcccchhhhhcccchHHHHHHH
Q psy10745 147 AHNGVRPCDISRQLRVSHGCVSKILSR 173 (197)
Q Consensus 147 ~~~g~r~~~isr~l~vshgcVskil~r 173 (197)
...|+.-.++|+.++||..-||+|.+-
T Consensus 78 ~~~glTq~elA~~lGis~s~is~~E~G 104 (141)
T 3kxa_A 78 MKKGFTQSELATAAGLPQPYLSRIENS 104 (141)
T ss_dssp HHTTCCHHHHHHHTTCCHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 468999999999999999999998763
No 411
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=20.97 E-value=31 Score=24.16 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhc------CCC--cccchhhhhcccchHHHHHHHhhhhc
Q psy10745 138 VVRQRIVELAHN------GVR--PCDISRQLRVSHGCVSKILSRESNLH 178 (197)
Q Consensus 138 ~~r~~iv~l~~~------g~r--~~~isr~l~vshgcVskil~ry~~~~ 178 (197)
...++|+++.+. |-. ..|||..++||...|.+-|..-.+.+
T Consensus 4 ~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG 52 (77)
T 2jt1_A 4 SIVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVG 52 (77)
T ss_dssp THHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 456778886644 344 56899999999999999887765544
No 412
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=20.84 E-value=53 Score=25.37 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=31.7
Q ss_pred HHHHHHHHHHh-cCCCcccchhhh--------hcccchHHHHHHHhhhhc
Q psy10745 138 VVRQRIVELAH-NGVRPCDISRQL--------RVSHGCVSKILSRESNLH 178 (197)
Q Consensus 138 ~~r~~iv~l~~-~g~r~~~isr~l--------~vshgcVskil~ry~~~~ 178 (197)
.++.-|+.+-. ..+..-||++.+ .+|+|-|...|.|-.+.+
T Consensus 2 ~l~~~iL~lL~~~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~G 51 (179)
T 1yg2_A 2 SLPHVILTVLSTRDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQG 51 (179)
T ss_dssp CHHHHHHHHHHHCCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCC
Confidence 35666776654 557778899988 699999999999987654
No 413
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=20.81 E-value=51 Score=23.82 Aligned_cols=25 Identities=8% Similarity=-0.027 Sum_probs=22.4
Q ss_pred hcCCCcccchhhhhcccchHHHHHH
Q psy10745 148 HNGVRPCDISRQLRVSHGCVSKILS 172 (197)
Q Consensus 148 ~~g~r~~~isr~l~vshgcVskil~ 172 (197)
+.|+.-.+.|+.++||...||++-+
T Consensus 82 ~~glsq~~la~~~g~s~~~i~~~E~ 106 (133)
T 3o9x_A 82 KLSLTQKEASEIFGGGVNAFSRYEK 106 (133)
T ss_dssp HTTCCHHHHHHHHCSCTTHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 6899999999999999999998654
No 414
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=20.76 E-value=47 Score=24.60 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=25.6
Q ss_pred hHHHHHHHHHH-----hc---CCCcccchhhhhcccchHH
Q psy10745 137 DVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 137 ~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcVs 168 (197)
...|++|++=| ++ ++.-.|||+..+||.|.+-
T Consensus 13 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY 52 (204)
T 2ibd_A 13 SGRRTELLDIAATLFAERGLRATTVRDIADAAGILSGSLY 52 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTSCHHHHH
T ss_pred chhHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCchhHH
Confidence 47888998754 34 5778999999999999873
No 415
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=20.76 E-value=21 Score=28.51 Aligned_cols=42 Identities=10% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHhcCCCcccchhhhhcccchHHHHHHHhhhhcCccccccc
Q psy10745 144 VELAHNGVRPCDISRQLRVSHGCVSKILSRESNLHNYRLVREE 186 (197)
Q Consensus 144 v~l~~~g~r~~~isr~l~vshgcVskil~ry~~~~n~~~~~~~ 186 (197)
+.+++.| .-...|++|.||..-||+-+.+-.+.-+.+|+.-+
T Consensus 10 ~~va~~g-s~s~AA~~L~isq~avS~~I~~LE~~lg~~Lf~R~ 51 (312)
T 2h9b_A 10 VAVVEEQ-SFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERG 51 (312)
T ss_dssp -------------------------------------------
T ss_pred HHHHHhC-CHHHHHHHhcCCccHHHHHHHHHHHHhCCEeEeeC
Confidence 4455555 55677999999999999999998888888887543
No 416
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=20.67 E-value=34 Score=26.68 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=25.9
Q ss_pred CCcccchhhhhcccchHHHHHHHhhhhcCc
Q psy10745 151 VRPCDISRQLRVSHGCVSKILSRESNLHNY 180 (197)
Q Consensus 151 ~r~~~isr~l~vshgcVskil~ry~~~~n~ 180 (197)
+.-.+||..|++|.-.||++|++..+.+=-
T Consensus 178 ~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I 207 (250)
T 3e6c_C 178 LSQKSIGEITGVHHVTVSRVLASLKRENIL 207 (250)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCe
Confidence 456789999999999999999999887643
No 417
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=20.62 E-value=42 Score=24.67 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=25.6
Q ss_pred hHHHHHHHHHH-----hc---CCCcccchhhhhcccchHHH
Q psy10745 137 DVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCVSK 169 (197)
Q Consensus 137 ~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcVsk 169 (197)
...|++|++-| ++ ++...|||+..+||.|.+-.
T Consensus 7 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~ 47 (199)
T 2o7t_A 7 LKRREHIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYR 47 (199)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCccCCHHHHHHHhCCCHHHHHH
Confidence 46788888754 34 46789999999999998743
No 418
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=20.62 E-value=30 Score=25.71 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=23.4
Q ss_pred hHHHHHHHHHH-----hcC---CCcccchhhhhcccchH
Q psy10745 137 DVVRQRIVELA-----HNG---VRPCDISRQLRVSHGCV 167 (197)
Q Consensus 137 ~~~r~~iv~l~-----~~g---~r~~~isr~l~vshgcV 167 (197)
...|++|++=| ++| +.-.|||+..+||.|.+
T Consensus 6 ~~~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvs~gtl 44 (197)
T 2gen_A 6 SSRKDEILQAALACFSEHGVDATTIEMIRDRSGASIGSL 44 (197)
T ss_dssp --CHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHH
Confidence 45688888644 445 67899999999999987
No 419
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=20.60 E-value=41 Score=24.88 Aligned_cols=32 Identities=34% Similarity=0.484 Sum_probs=25.0
Q ss_pred HHHHHHHHHH-----hcC--CCcccchhhhhcccchHHH
Q psy10745 138 VVRQRIVELA-----HNG--VRPCDISRQLRVSHGCVSK 169 (197)
Q Consensus 138 ~~r~~iv~l~-----~~g--~r~~~isr~l~vshgcVsk 169 (197)
..|++|++-| ++| +...|||+..+||.|.+-+
T Consensus 13 ~~r~~Il~aA~~lf~~~G~~~t~~~IA~~agvs~~tlY~ 51 (196)
T 2qwt_A 13 RNRARVLEVAYDTFAAEGLGVPMDEIARRAGVGAGTVYR 51 (196)
T ss_dssp HHHHHHHHHHHHHHHHTCTTSCHHHHHHHTTSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHH
Confidence 5688888744 455 7788999999999998743
No 420
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=20.56 E-value=34 Score=25.81 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=24.9
Q ss_pred hHHHHHHHHHH-----hc---CCCcccchhhhhcccchH
Q psy10745 137 DVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCV 167 (197)
Q Consensus 137 ~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcV 167 (197)
...|++|++-| ++ ++.-.|||+..+||.|.+
T Consensus 2 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~AGvskgtl 40 (208)
T 2g3b_A 2 SERRDAILKASATAIAQRGIRGLRVNDVAEVAGVSPGLL 40 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHH
Confidence 46788888643 43 588999999999999987
No 421
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=20.52 E-value=19 Score=27.67 Aligned_cols=25 Identities=32% Similarity=0.740 Sum_probs=17.3
Q ss_pred ccccCCcccc--CCCCCChHHHHHHHH
Q psy10745 121 GVNQLGGVFV--NGRPLPDVVRQRIVE 145 (197)
Q Consensus 121 ~~nqlg~~~~--ngrplp~~~r~~iv~ 145 (197)
-+|+|.|-|. .-+|||+..+.||.+
T Consensus 72 AlNaLAGHY~s~g~~PlPek~k~Rl~~ 98 (113)
T 2y6x_A 72 ALNSLAGHYSSYPNRPLPEKLKARLEQ 98 (113)
T ss_dssp HHHHHHHHHHHCTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHH
Confidence 4677766665 456888888887764
No 422
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=20.50 E-value=23 Score=26.57 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=23.7
Q ss_pred HHHHHHHHHHh-----c---CCCcccchhhhhcccchH
Q psy10745 138 VVRQRIVELAH-----N---GVRPCDISRQLRVSHGCV 167 (197)
Q Consensus 138 ~~r~~iv~l~~-----~---g~r~~~isr~l~vshgcV 167 (197)
..|.+|++-|. + ++...|||+..+||.|.+
T Consensus 11 ~~r~~Il~aA~~lF~~~Gy~~ts~~~IA~~aGvsk~tl 48 (202)
T 2i10_A 11 FDDQVALQTAMELFWRQGYEGTSITDLTKALGINPPSL 48 (202)
T ss_dssp -CCHHHHHHHHHHHHHHTTTTCCHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCChHHH
Confidence 45778887553 3 577899999999999998
No 423
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=20.46 E-value=42 Score=24.33 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=26.2
Q ss_pred CChHHHHHHHHHH-----hcC---CCcccchhhhhcccchH
Q psy10745 135 LPDVVRQRIVELA-----HNG---VRPCDISRQLRVSHGCV 167 (197)
Q Consensus 135 lp~~~r~~iv~l~-----~~g---~r~~~isr~l~vshgcV 167 (197)
-....|++|++-| ++| +...+||+..+||.|.+
T Consensus 13 ~~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~ 53 (211)
T 3him_A 13 GTSKAAARIRAAAIEVFAAKGYGATTTREIAASLDMSPGAV 53 (211)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCcChh
Confidence 4567899998755 444 77899999999999976
No 424
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=20.42 E-value=46 Score=23.97 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=26.3
Q ss_pred ChHHHHHHHHHHh------cCCCcccchhhhhcccchHH
Q psy10745 136 PDVVRQRIVELAH------NGVRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 136 p~~~r~~iv~l~~------~g~r~~~isr~l~vshgcVs 168 (197)
....|.+|++-|. .++...|||+..+||.|.+-
T Consensus 12 ~~~~r~~Il~aA~~lf~~~~~~t~~~Ia~~agvs~~t~Y 50 (190)
T 2v57_A 12 RERTRRAILDAAMLVLADHPTAALGDIAAAAGVGRSTVH 50 (190)
T ss_dssp -CHHHHHHHHHHHHHHTTCTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHH
Confidence 3567888887553 68899999999999999874
No 425
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=20.22 E-value=42 Score=25.41 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHH-----hc---CCCcccchhhhhcccchHH
Q psy10745 136 PDVVRQRIVELA-----HN---GVRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 136 p~~~r~~iv~l~-----~~---g~r~~~isr~l~vshgcVs 168 (197)
....|++|++-| ++ ++...|||+..+||.|.+-
T Consensus 7 ~~~~r~~Il~aA~~lf~~~Gy~~ts~~~IA~~AGvskgtlY 47 (215)
T 1ui5_A 7 AEQTRATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALY 47 (215)
T ss_dssp TTTHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchhhH
Confidence 356788888754 34 5788999999999999873
No 426
>3f5t_A NS1, nonstructural protein 1; H5N1, HOST-virus interaction, interferon ANT system evasion, nucleus, RNA-binding; 2.70A {Influenza virus}
Probab=20.08 E-value=30 Score=28.96 Aligned_cols=18 Identities=22% Similarity=0.652 Sum_probs=16.8
Q ss_pred CcchHHhHHHHHhcCCCC
Q psy10745 51 TMFAWEIRDRLLAEGICS 68 (197)
Q Consensus 51 ~iFaWEIRdrLl~~GvC~ 68 (197)
++|+|-+|.+++.+++.+
T Consensus 12 dcflWHvrkrfad~~lgD 29 (215)
T 3f5t_A 12 DCFLWHVRKRFADQELGD 29 (215)
T ss_dssp HHHHHHHHHHHHHHSCCC
T ss_pred ehhhHHHHHHhhhccccC
Confidence 589999999999999987
No 427
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=20.03 E-value=33 Score=25.57 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=25.7
Q ss_pred CCChHHHHHHHHHHh-----c--CCCcccchhhhhcccchHH
Q psy10745 134 PLPDVVRQRIVELAH-----N--GVRPCDISRQLRVSHGCVS 168 (197)
Q Consensus 134 plp~~~r~~iv~l~~-----~--g~r~~~isr~l~vshgcVs 168 (197)
+=....|.+|++-|. + ++.-.+||+..+||.|.+-
T Consensus 16 ~~~~~~r~~Il~aA~~lf~~~G~~~s~~~IA~~aGvs~~tlY 57 (215)
T 2hku_A 16 ESGRQTRDALFTAATELFLEHGEGVPITQICAAAGAHPNQVT 57 (215)
T ss_dssp ----CHHHHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHH
Confidence 334578999987553 3 5888999999999999874
Done!