RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10745
(197 letters)
>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 111 bits (280), Expect = 2e-33
Identities = 46/58 (79%), Positives = 49/58 (84%)
Query: 25 VIGGSKPKVATAPVVDAIASYKRENPTMFAWEIRDRLLAEGICSQDNVPSVSSINRYI 82
VIGGSKPKVAT VV+ IA YKR+NPTMFAWEIRDRLLAE +C D VPSVSSINR I
Sbjct: 1 VIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRII 58
>d6paxa2 a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 65
Score = 106 bits (266), Expect = 4e-31
Identities = 39/54 (72%), Positives = 47/54 (87%)
Query: 27 GGSKPKVATAPVVDAIASYKRENPTMFAWEIRDRLLAEGICSQDNVPSVSSINR 80
GGSKP+VAT VV IA YK+E P++FAWEIRDRLL+EG+C+ DN+PSVSSINR
Sbjct: 1 GGSKPRVATPEVVSKIAQYKQECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINR 54
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId:
9606]}
Length = 63
Score = 89.7 bits (223), Expect = 1e-24
Identities = 51/53 (96%), Positives = 51/53 (96%)
Query: 121 GVNQLGGVFVNGRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSR 173
GVNQLGGVFVNGRPLPDVVRQRIVELAH GVRPCDISRQLRVSHGCVSKIL R
Sbjct: 1 GVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGR 53
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 123
Score = 91.5 bits (227), Expect = 1e-24
Identities = 41/55 (74%), Positives = 49/55 (89%)
Query: 119 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSR 173
G VNQLGGVF+NGRPLP+ +R +IVE+A +G+RPC ISRQLRVSHGCVSKIL+R
Sbjct: 1 QGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNR 55
Score = 80.0 bits (197), Expect = 3e-20
Identities = 37/68 (54%), Positives = 51/68 (75%)
Query: 13 RRYYETGSFKAGVIGGSKPKVATAPVVDAIASYKRENPTMFAWEIRDRLLAEGICSQDNV 72
RY ETGS + GVIGGSKP++AT + + I YKR +P MF+WEIR++L+ EG+C +
Sbjct: 54 NRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTA 113
Query: 73 PSVSSINR 80
PSVS+I+R
Sbjct: 114 PSVSAISR 121
>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal
domain) {Escherichia coli [TaxId: 562]}
Length = 43
Score = 30.0 bits (68), Expect = 0.019
Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 132 GRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRES 175
GR + R ++ + G+ IS+ + ++ V K+++ +
Sbjct: 1 GRK-RKIDRDAVLNMWQQGLGASHISKTMNIARSTVYKVINESN 43
>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA
{Staphylococcus aureus [TaxId: 1280]}
Length = 94
Score = 29.7 bits (67), Expect = 0.060
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 135 LPDVVRQRIVE-LAHNGVRPCDISRQLRVSHGCVSKILSRESNLHNYRLVREE 186
L D R RI+E L+ + IS QL +S VS L L + LV+ +
Sbjct: 15 LGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKL---LKSVHLVKAK 64
>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus),
pcc7942 [TaxId: 1129]}
Length = 98
Score = 29.3 bits (66), Expect = 0.11
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 135 LPDVVRQRIVE-LAHNGVRPCDISRQLRVSHGCVSKILSRESNLHNYRLVREE 186
L D R R++ LA + + D+++ + VS VS L L N RLV
Sbjct: 20 LADPNRLRLLSLLARSELCVGDLAQAIGVSESAVSHQLRS---LRNLRLVSYR 69
>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 190
Score = 29.6 bits (66), Expect = 0.15
Identities = 8/53 (15%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 135 LPDVVRQRIVE-LAHNGVRPCDISRQLRVSHGCVSKILSRESNLHNYRLVREE 186
+ + R++I++ L + + +S L + + + + L LV +
Sbjct: 16 MLEDTRRKILKLLRNKEMTISQLSEILGKTPQTIYHHIEK---LKEAGLVEVK 65
>d2i6ha1 a.118.8.5 (A:1-179) Hypothetical protein Atu0120
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 179
Score = 28.1 bits (62), Expect = 0.56
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 47 RENPTMFAWEIRDRLLAEGICSQDNVPSVSSINRYITYVPIGH 89
R M+A + R A+ + + +VS R Y+P H
Sbjct: 77 RGTAHMYATDPLARFFADEAIRRGHDQAVSEDLRVFFYLPFSH 119
>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 339
Score = 27.8 bits (60), Expect = 0.83
Identities = 6/67 (8%), Positives = 16/67 (23%), Gaps = 2/67 (2%)
Query: 29 SKPKVATAPVVDAIASYKRENPTMFAWEIRDRLLAEGICSQDNVPSVSSINRYITYVP-- 86
A NP + +++ + + + N +
Sbjct: 261 GGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHR 320
Query: 87 IGHGGVN 93
G G ++
Sbjct: 321 YGFGKID 327
>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein
PF1790 {Pyrococcus furiosus [TaxId: 2261]}
Length = 194
Score = 27.3 bits (60), Expect = 0.87
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 135 LPDVVRQRIVE-LAHNGVRPCDISRQLRVSHGCVSKILSRESNLHNYRLVREE 186
L + R+RI+ L ++SR+L V V + L L L+
Sbjct: 12 LGNETRRRILFLLTKRPYFVSELSRELGVGQKAVLEHL---RILEEAGLIESR 61
>d2f5va2 d.16.1.1 (A:355-552) Pyranose 2-oxidase {White-rot fungus
(Peniophora sp. SG) [TaxId: 204723]}
Length = 198
Score = 26.9 bits (59), Expect = 1.6
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 1 PTPQLLTPFLCPRRYYETGSFKAGVIGGSKPKVATAPVVD 40
P PQ+ T F ++ A G + + + +VD
Sbjct: 77 PEPQVTTLFQPSHPWHTQIHRDAFSYGAVQQSIDSRLIVD 116
>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId:
1421]}
Length = 309
Score = 26.8 bits (57), Expect = 1.7
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 34 ATAPVVDAIASYKRENPTMFAWEIRDRLLA 63
AT V A ENP++ ++R L
Sbjct: 252 ATPHVSGLAAKIWAENPSLSNTQLRSNLQE 281
>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 177
Score = 25.9 bits (56), Expect = 2.6
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 81 YITYVPIGHGGVNQLGGVFVNGRPLPDVVRQRIVASRSHGGV 122
I G QL G++ NG + ++ + G V
Sbjct: 133 IIGGKEQGQPFQGQLSGLYYNGLKVLNMAAENDANIAIVGNV 174
>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]}
Length = 269
Score = 26.4 bits (57), Expect = 2.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 34 ATAPVVDAIASYKRENPTMFAWEIRDRLLA 63
AT V A A K++NP+ +IR+ L
Sbjct: 217 ATPHVAGAAALVKQKNPSWSNVQIRNHLKN 246
>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg
[TaxId: 1423]}
Length = 274
Score = 26.1 bits (56), Expect = 3.2
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 1 PTPQLLTPFLCPRRYYETGSFKAGVIGGSKPKVATAPVVDAIASYKRENPTMFAWEIRDR 60
+++ P Y T ++ + +A+ V A A ++P + A ++R+R
Sbjct: 193 AELEVMAPGAGVYSTYPTNTYATL----NGTSMASPHVAGAAALILSKHPNLSASQVRNR 248
Query: 61 LLA 63
L +
Sbjct: 249 LSS 251
>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase
{Escherichia coli [TaxId: 562]}
Length = 144
Score = 25.6 bits (56), Expect = 3.3
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 131 NGRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVS 168
G PD+ R + E A + D + + GC S
Sbjct: 100 KGYDYPDIQRAVLAEKADAPLIQWDATSATLKALGCHS 137
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 63
Score = 24.3 bits (53), Expect = 3.4
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 143 IVELAHNG--VRPCDISRQLRVSHGCVSKILSR 173
I +L G I+ +L S VS+ +SR
Sbjct: 14 IYDLEEEGVTPLRARIAERLDQSGPTVSQTVSR 46
>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans
[TaxId: 93466]}
Length = 671
Score = 25.8 bits (55), Expect = 4.9
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 10/60 (16%)
Query: 34 ATAPVVDAIASYKRENPTMFAWEIRDRLLAEGICSQDNVPSVSSINRYITYVPIGHGGVN 93
A V +A ++ P W+IR L + + + G+G V
Sbjct: 383 AAPHVTGVVAVLLQKFPNAKPWQIRKLLEN----TAFDFNGNGWDHDT------GYGLVK 432
>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens,
Novo/BPN' [TaxId: 1390]}
Length = 281
Score = 25.2 bits (54), Expect = 6.0
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 34 ATAPVVDAIASYKRENPTMFAWEIRDRLLA 63
A+ V A A ++P ++R L
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLEN 252
>d3bwud1 b.167.1.1 (D:2-122) Outer membrane usher protein FimD
{Escherichia coli [TaxId: 562]}
Length = 121
Score = 24.1 bits (52), Expect = 8.3
Identities = 10/67 (14%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 128 VFVNGRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRESNLHNYRLVREEG 187
+++N + + G+ PC ++R S G + ++ + L + +
Sbjct: 36 IYLNNGYMATRDVTFNTGDSEQGIVPC-LTRAQLASMGLNTASVAGMNLLAD------DA 88
Query: 188 CFELSDL 194
C L+ +
Sbjct: 89 CVPLTTM 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.140 0.424
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 766,163
Number of extensions: 35880
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 26
Length of query: 197
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 116
Effective length of database: 1,295,466
Effective search space: 150274056
Effective search space used: 150274056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.1 bits)