BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10746
(59 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K78|A Chain A, Pax5(1-149)+ets-1(331-440)+dna
pdb|1K78|E Chain E, Pax5(1-149)+ets-1(331-440)+dna
pdb|1K78|I Chain I, Pax5(1-149)+ets-1(331-440)+dna
pdb|1MDM|A Chain A, Inhibited Fragment Of Ets-1 And Paired Domain Of Pax5
Bound To Dna
Length = 149
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 34/43 (79%)
Query: 6 NVTSKNIIKWSHGGVNQLGGVFVNGRPLPDVVRQRIVELAHNG 48
N + + HGGVNQLGGVFVNGRPLPDVVRQRIVELAH G
Sbjct: 6 NYPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQG 48
>pdb|2K27|A Chain A, Solution Structure Of Human Pax8 Paired Box Domain
Length = 159
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/38 (76%), Positives = 33/38 (86%)
Query: 11 NIIKWSHGGVNQLGGVFVNGRPLPDVVRQRIVELAHNG 48
N I+ HGG+NQLGG FVNGRPLP+VVRQRIV+LAH G
Sbjct: 4 NSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQG 41
>pdb|6PAX|A Chain A, Crystal Structure Of The Human Pax-6 Paired Domain-Dna
Complex Reveals A General Model For Pax Protein-Dna
Interactions
Length = 133
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/33 (84%), Positives = 29/33 (87%)
Query: 17 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGG 49
H GVNQLGGVFVNGRPLPD RQRIVELAH+G
Sbjct: 2 HSGVNQLGGVFVNGRPLPDSTRQRIVELAHSGA 34
>pdb|1PDN|C Chain C, Crystal Structure Of A Paired Domain-Dna Complex At 2.5
Angstroms Resolution Reveals Structural Basis For Pax
Developmental Mutations
Length = 128
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 27/32 (84%)
Query: 17 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHNG 48
G VNQLGGVF+NGRPLP+ +R +IVE+A +G
Sbjct: 2 QGRVNQLGGVFINGRPLPNNIRLKIVEMAADG 33
>pdb|1EKF|A Chain A, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKF|B Chain B, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKP|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKP|B Chain B, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKV|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1EKV|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1KT8|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KT8|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KTA|A Chain A, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|1KTA|B Chain B, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|2A1H|A Chain A, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
pdb|2A1H|B Chain B, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
Length = 365
Score = 30.0 bits (66), Expect = 0.32, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 3 KYTNVTSKNI-IKWSH-GGVNQLGGVFVNGRPLPDVVRQRIVELAHNGG 49
+ T V + NI + W+H GV +L +NG LP VVRQ ++++A G
Sbjct: 234 QLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWG 282
>pdb|2HHF|B Chain B, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 3 KYTNVTSKNI-IKWSH-GGVNQLGGVFVNGRPLPDVVRQRIVELAHNGG 49
+ T V + NI + W+H GV +L +NG LP VVRQ ++++A G
Sbjct: 234 QLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWG 282
>pdb|2HG8|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HG8|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HGX|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGX|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 3 KYTNVTSKNI-IKWSH-GGVNQLGGVFVNGRPLPDVVRQRIVELAHNGG 49
+ T V + NI + W+H GV +L +NG LP VVRQ ++++A G
Sbjct: 234 QLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWG 282
>pdb|2HGW|A Chain A, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGW|B Chain B, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 3 KYTNVTSKNI-IKWSH-GGVNQLGGVFVNGRPLPDVVRQRIVELAHNGG 49
+ T V + NI + W+H GV +L +NG LP VVRQ ++++A G
Sbjct: 234 QLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWG 282
>pdb|2HHF|A Chain A, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 3 KYTNVTSKNI-IKWSH-GGVNQLGGVFVNGRPLPDVVRQRIVELAHNGG 49
+ T V + NI + W+H GV +L +NG LP VVRQ ++++A G
Sbjct: 234 QLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWG 282
>pdb|2HDK|A Chain A, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HDK|B Chain B, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 30.0 bits (66), Expect = 0.36, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 3 KYTNVTSKNI-IKWSH-GGVNQLGGVFVNGRPLPDVVRQRIVELAHNGG 49
+ T V + NI + W+H GV +L +NG LP VVRQ ++++A G
Sbjct: 234 QLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWG 282
>pdb|2KZ4|A Chain A, Solution Structure Of Protein Sf1141 From Shigella
Flexneri 2a, Northeast Structural Genomics Consortium
(Nesg) Target Sft2
Length = 112
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 2 RKYTNVTSKNIIKWSHGGVNQLGGVFVN--GRPLPDVVRQRIVELAHNGG 49
RK N TS+ IK S G L G +N G+PLPD R R+ L G
Sbjct: 66 RKDINATSR--IKVSTG---PLAGRVLNIIGQPLPDAARTRLEILCREGA 110
>pdb|1XD8|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
pdb|1XD8|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
pdb|1XD9|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
With Mgadp Bound
pdb|1XD9|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
With Mgadp Bound
Length = 289
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 6 NVTSKNIIKWSHGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGG 49
N SK I+K+++ G +LGG+ N R D + I+ LA+ G
Sbjct: 162 NNISKGIVKYANSGSVRLGGLICNSRN-TDREDELIIALANKLG 204
>pdb|1XDB|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein Asp129glu
pdb|1XDB|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein Asp129glu
Length = 289
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 6 NVTSKNIIKWSHGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGG 49
N SK I+K+++ G +LGG+ N R D + I+ LA+ G
Sbjct: 162 NNISKGIVKYANSGSVRLGGLICNSRN-TDREDELIIALANKLG 204
>pdb|1RW4|A Chain A, Nitrogenase Fe Protein L127 Deletion Variant
Length = 272
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 6 NVTSKNIIKWSHGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGG 49
N SK I+K+++ G +LGG+ N R D + I+ LA+ G
Sbjct: 162 NNISKGIVKYANSGSVRLGGLICNSRN-TDREDELIIALANKLG 204
>pdb|1NIP|A Chain A, Crystallographic Structure Of The Nitrogenase Iron Protein
From Azotobacter Vinelandii
pdb|1NIP|B Chain B, Crystallographic Structure Of The Nitrogenase Iron Protein
From Azotobacter Vinelandii
pdb|1N2C|E Chain E, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|F Chain F, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|G Chain G, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|H Chain H, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|2NIP|A Chain A, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|2NIP|B Chain B, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1G1M|A Chain A, All-Ferrous Nitrogenase Iron Protein From Azotobacter
Vinelandii
pdb|1G1M|B Chain B, All-Ferrous Nitrogenase Iron Protein From Azotobacter
Vinelandii
pdb|1G5P|A Chain A, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1G5P|B Chain B, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1FP6|A Chain A, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|B Chain B, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|C Chain C, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|D Chain D, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1M1Y|E Chain E, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|F Chain F, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|G Chain G, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|H Chain H, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|M Chain M, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|N Chain N, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|O Chain O, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|P Chain P, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M34|E Chain E, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|F Chain F, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|G Chain G, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|H Chain H, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|M Chain M, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|N Chain N, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|O Chain O, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|P Chain P, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|2AFH|E Chain E, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFH|F Chain F, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFI|E Chain E, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|F Chain F, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|G Chain G, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|H Chain H, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|M Chain M, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|N Chain N, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|O Chain O, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|P Chain P, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFK|E Chain E, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|F Chain F, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|G Chain G, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|H Chain H, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
Length = 289
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 6 NVTSKNIIKWSHGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGG 49
N SK I+K+++ G +LGG+ N R D + I+ LA+ G
Sbjct: 162 NNISKGIVKYANSGSVRLGGLICNSRN-TDREDELIIALANKLG 204
>pdb|1G20|E Chain E, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|F Chain F, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|G Chain G, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|H Chain H, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|E Chain E, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|F Chain F, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|G Chain G, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|H Chain H, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
Length = 289
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 6 NVTSKNIIKWSHGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGG 49
N SK I+K+++ G +LGG+ N R D + I+ LA+ G
Sbjct: 162 NNISKGIVKYANSGSVRLGGLICNSRN-TDREDELIIALANKLG 204
>pdb|2C8V|A Chain A, Insights Into The Role Of Nucleotide-Dependent
Conformational Change In Nitrogenase Catalysis:
Structural Characterization Of The Nitrogenase Fe
Protein Leu127 Deletion Variant With Bound Mgatp
Length = 288
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 6 NVTSKNIIKWSHGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGG 49
N SK I+K+++ G +LGG+ N R D + I+ LA+ G
Sbjct: 161 NNISKGIVKYANSGSVRLGGLICNSRN-TDREDELIIALANKLG 203
>pdb|1DE0|A Chain A, Modulating The Midpoint Potential Of The [4fe-4s] Cluster
Of The Nitrogenase Fe Protein
pdb|1DE0|B Chain B, Modulating The Midpoint Potential Of The [4fe-4s] Cluster
Of The Nitrogenase Fe Protein
pdb|1XCP|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein Phe135trp
With Mgadp Bound
pdb|1XCP|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein Phe135trp
With Mgadp Bound
pdb|1XCP|C Chain C, Crystal Structure Of The Nitrogenase Fe Protein Phe135trp
With Mgadp Bound
pdb|1XCP|D Chain D, Crystal Structure Of The Nitrogenase Fe Protein Phe135trp
With Mgadp Bound
Length = 289
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 6 NVTSKNIIKWSHGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGG 49
N SK I+K+++ G +LGG+ N R D + I+ LA+ G
Sbjct: 162 NNISKGIVKYANSGSVRLGGLICNSRN-TDREDELIIALANKLG 204
>pdb|1KXC|A Chain A, Sindbis Virus Capsid (N190k Mutant), Tetragonal Crystal
Form
Length = 159
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 10/42 (23%)
Query: 4 YTNVTSKNIIKWSHGGVNQLGGVFV----------NGRPLPD 35
YT+ + KW HG V GG F +GRP+ D
Sbjct: 75 YTSEHPEGFYKWHHGAVQYSGGRFTIPRGVGGRGDSGRPIMD 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,805,682
Number of Sequences: 62578
Number of extensions: 54252
Number of successful extensions: 175
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 21
length of query: 59
length of database: 14,973,337
effective HSP length: 30
effective length of query: 29
effective length of database: 13,095,997
effective search space: 379783913
effective search space used: 379783913
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)