Query psy10746
Match_columns 59
No_of_seqs 109 out of 160
Neff 2.6
Searched_HMMs 29240
Date Fri Aug 16 17:29:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10746.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10746hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pdn_C Protein (PRD paired); p 98.6 4.3E-08 1.5E-12 56.0 3.3 35 16-50 1-35 (128)
2 1k78_A Paired box protein PAX5 98.4 2.2E-07 7.4E-12 56.3 3.8 46 5-50 5-50 (149)
3 2k27_A Paired box protein PAX- 97.5 0.00011 3.7E-09 45.0 3.8 41 10-50 3-43 (159)
4 1tc3_C Protein (TC3 transposas 92.4 0.16 5.3E-06 24.0 3.0 20 30-49 1-22 (51)
5 2y6x_A PSB27, photosystem II 1 86.6 0.17 5.7E-06 32.5 0.5 27 17-43 70-98 (113)
6 2kmf_A Photosystem II 11 kDa p 85.3 0.2 6.9E-06 32.2 0.4 27 17-43 74-102 (115)
7 1uxc_A FRUR (1-57), fructose r 80.5 0.87 3E-05 25.4 1.8 27 27-53 20-51 (65)
8 3bhq_A Transcriptional regulat 79.3 0.66 2.3E-05 27.6 1.1 22 25-46 1-22 (211)
9 2l8n_A Transcriptional repress 76.6 2.8 9.5E-05 23.4 3.1 27 27-53 29-57 (67)
10 3u5c_N S27A, YS15, 40S ribosom 74.9 1 3.5E-05 30.4 1.2 21 33-53 29-49 (151)
11 3j20_Q 30S ribosomal protein S 74.1 1.1 3.6E-05 30.4 1.1 21 33-53 29-49 (158)
12 2k42_B Espfu; WAsp, GBD, autoi 73.8 4.9 0.00017 21.7 3.5 26 30-55 1-26 (36)
13 2xzm_O RPS13E; ribosome, trans 73.2 1.3 4.6E-05 29.9 1.4 21 33-53 31-51 (153)
14 1jko_C HIN recombinase, DNA-in 72.3 2.8 9.4E-05 19.9 2.1 20 30-49 1-22 (52)
15 2ckx_A NGTRF1, telomere bindin 68.3 4 0.00014 24.1 2.6 19 28-46 60-78 (83)
16 3na3_A DNA mismatch repair pro 56.6 3.6 0.00012 29.6 1.0 30 26-55 261-290 (348)
17 3u5c_Q RP61R, 40S ribosomal pr 54.6 2.5 8.5E-05 27.8 -0.1 20 24-43 27-50 (143)
18 1lgp_A Cell cycle checkpoint p 53.9 4.9 0.00017 23.4 1.1 13 22-34 66-78 (116)
19 1b63_A MUTL; DNA mismatch repa 50.8 4.7 0.00016 28.0 0.8 30 26-55 258-287 (333)
20 3gbh_A NAD(P)H-flavin oxidored 50.8 13 0.00044 22.9 2.8 27 25-53 22-48 (213)
21 1u78_A TC3 transposase, transp 50.1 16 0.00054 20.6 2.9 21 30-50 4-24 (141)
22 3gag_A Putative NADH dehydroge 49.5 14 0.00048 22.5 2.8 26 26-53 18-43 (206)
23 1h7s_A PMS1 protein homolog 2; 49.0 6.8 0.00023 27.8 1.4 26 26-51 290-315 (365)
24 2hsg_A Glucose-resistance amyl 47.2 16 0.00054 23.3 2.8 25 28-52 23-49 (332)
25 3ge6_A Nitroreductase; structu 45.1 18 0.00062 22.1 2.8 28 25-54 21-48 (212)
26 2j8p_A Cleavage stimulation fa 44.7 9.8 0.00033 21.2 1.4 15 32-46 26-40 (49)
27 1wln_A Afadin; beta sandwich, 44.6 6.1 0.00021 23.4 0.6 12 23-34 79-90 (120)
28 1uht_A Expressed protein; FHA 43.6 6.9 0.00024 22.9 0.7 12 23-34 75-86 (118)
29 2aje_A Telomere repeat-binding 43.4 16 0.00054 22.6 2.3 19 28-46 73-91 (105)
30 3j20_K 30S ribosomal protein S 42.5 5.6 0.00019 25.9 0.1 20 24-43 24-47 (135)
31 3vnn_A DNA ligase 4; non-homol 40.8 18 0.00062 22.2 2.3 24 26-49 103-129 (139)
32 3qpi_A Chlorite dismutase; oxy 40.3 12 0.00041 26.1 1.5 26 33-58 99-125 (189)
33 1gxc_A CHK2, CDS1, serine/thre 40.1 5.7 0.00019 24.6 -0.1 11 24-34 103-113 (149)
34 2x48_A CAG38821; archeal virus 39.9 17 0.00058 18.0 1.7 17 33-49 14-32 (55)
35 2xzm_I RPS16E; ribosome, trans 39.7 7.6 0.00026 25.6 0.5 20 24-43 29-52 (145)
36 3gqs_A Adenylate cyclase-like 39.4 6.4 0.00022 22.7 0.0 12 24-35 69-80 (106)
37 1qpz_A PURA, protein (purine n 38.8 19 0.00064 23.1 2.2 22 32-53 26-48 (340)
38 2hlj_A Hypothetical protein; p 38.8 48 0.0016 18.7 3.8 18 32-49 124-141 (157)
39 3po8_A RV0020C protein, putati 38.7 6.6 0.00023 22.4 0.0 11 24-34 65-75 (100)
40 3kjx_A Transcriptional regulat 38.0 27 0.00094 22.4 2.9 25 29-53 32-58 (344)
41 3qy2_A Cyclin-dependent kinase 37.5 12 0.00043 24.3 1.2 27 29-56 9-35 (117)
42 2vqe_I 30S ribosomal protein S 36.7 2.3 7.8E-05 27.5 -2.4 11 24-34 24-34 (128)
43 4i1k_A B3 domain-containing tr 36.6 28 0.00096 21.8 2.7 26 28-54 22-47 (146)
44 3bem_A Putative NAD(P)H nitror 36.1 29 0.00099 21.4 2.7 22 26-47 28-49 (218)
45 3h4l_A DNA mismatch repair pro 35.5 15 0.00051 26.4 1.5 24 26-49 285-308 (367)
46 1vfr_A NAD(P)H\:FMN oxidoreduc 35.4 36 0.0012 20.5 3.0 26 26-53 17-42 (218)
47 2jqj_A DNA damage response pro 35.4 7.5 0.00026 24.0 -0.1 12 23-34 86-97 (151)
48 3fm8_A Kinesin-like protein KI 35.3 7.4 0.00025 24.1 -0.1 12 24-35 90-101 (124)
49 2h0u_A NADPH-flavin oxidoreduc 35.2 36 0.0012 20.6 3.0 22 26-47 18-39 (217)
50 3lf9_A 4E10_D0_1IS1A_001_C (T1 35.1 24 0.00083 23.0 2.3 20 28-47 28-47 (121)
51 3kw6_A 26S protease regulatory 34.6 27 0.00092 18.8 2.1 20 32-51 1-21 (78)
52 4h87_A Kanadaptin; FHA domain 34.5 7.9 0.00027 23.7 -0.1 14 22-35 92-105 (130)
53 1dmz_A Protein (protein kinase 34.2 8.6 0.00029 24.2 0.0 13 23-35 82-94 (158)
54 2b67_A COG0778: nitroreductase 34.1 32 0.0011 20.7 2.6 26 26-54 18-43 (204)
55 1g6g_A Protein kinase RAD53; b 33.2 9.1 0.00031 22.9 0.0 13 23-35 78-90 (127)
56 2csw_A Ubiquitin ligase protei 32.7 12 0.00041 23.0 0.5 15 21-35 80-94 (145)
57 2hay_A Putative NAD(P)H-flavin 32.5 39 0.0013 20.6 2.8 21 26-47 24-44 (224)
58 1ytv_M V1AR, vasopressin V1A r 32.4 13 0.00046 22.9 0.7 19 21-39 10-28 (84)
59 1icr_A Oxygen-insensitive NAD( 32.1 42 0.0014 20.1 2.9 22 26-47 15-36 (217)
60 3m5k_A Putative NADH dehydroge 32.1 41 0.0014 20.1 2.9 26 26-54 20-45 (172)
61 3els_A PRE-mRNA leakage protei 30.4 11 0.00037 24.0 0.0 13 23-35 116-128 (158)
62 1r21_A Antigen KI-67; beta san 30.4 11 0.00037 22.4 0.0 12 23-34 74-85 (128)
63 2pie_A E3 ubiquitin-protein li 30.3 10 0.00035 23.0 -0.1 13 23-35 74-86 (138)
64 2jpe_A Nuclear inhibitor of pr 30.2 9.9 0.00034 23.1 -0.2 13 22-34 98-110 (140)
65 3hx1_A SLR1951 protein; P74513 29.8 8.2 0.00028 23.5 -0.6 11 24-34 82-92 (131)
66 1qu5_A Protein kinase SPK1; FH 29.6 11 0.00039 24.4 0.0 12 23-34 106-117 (182)
67 1du2_A DNA polymerase III; alp 29.6 28 0.00097 20.8 1.8 27 29-55 4-31 (76)
68 1mzk_A Kinase associated prote 29.2 12 0.00039 22.8 -0.0 12 23-34 75-86 (139)
69 2l32_A Small archaeal modifier 28.6 14 0.00049 20.8 0.4 13 25-37 38-50 (74)
70 2xt9_B Putative signal transdu 28.5 12 0.00039 22.0 -0.1 12 23-34 72-83 (115)
71 4ejq_A Kinesin-like protein KI 28.3 11 0.00038 23.6 -0.2 12 23-34 109-120 (154)
72 1hlv_A CENP-B, major centromer 28.2 51 0.0017 18.7 2.7 19 31-49 6-25 (131)
73 3h5t_A Transcriptional regulat 27.9 22 0.00076 23.0 1.2 21 32-52 35-57 (366)
74 2cye_A TTHA1846, putative thio 26.2 50 0.0017 18.0 2.3 17 29-45 111-129 (133)
75 3pxv_A Nitroreductase; flavopr 26.2 48 0.0017 19.8 2.4 26 26-54 18-43 (189)
76 3ek3_A Nitroreductase; YP_2117 25.9 55 0.0019 19.6 2.7 21 26-47 19-39 (190)
77 3g7q_A Valine-pyruvate aminotr 25.6 47 0.0016 21.5 2.4 22 28-49 192-214 (417)
78 3of4_A Nitroreductase; structu 25.4 65 0.0022 20.0 3.0 26 26-54 16-41 (209)
79 2inc_C TOUB protein; DIIRON, 4 25.3 5.9 0.0002 24.4 -1.9 25 25-54 50-76 (83)
80 3e10_A Putative NADH oxidase; 24.9 66 0.0023 19.0 2.9 21 26-47 13-33 (168)
81 2kb3_A Oxoglutarate dehydrogen 24.4 16 0.00055 22.7 0.0 12 23-34 107-118 (143)
82 3pg6_A E3 ubiquitin-protein li 24.3 83 0.0028 21.2 3.5 33 18-50 127-159 (159)
83 1xn8_A Hypothetical protein YQ 24.1 50 0.0017 21.7 2.4 17 31-47 51-67 (131)
84 1puc_A P13SUC1, P13; cell cycl 23.8 37 0.0013 21.6 1.7 26 30-56 6-31 (105)
85 1ywq_A Nitroreductase family p 23.7 59 0.002 19.2 2.5 21 26-46 20-40 (200)
86 2noc_A Putative periplasmic pr 23.3 77 0.0026 19.2 3.0 31 19-49 36-67 (99)
87 3op7_A Aminotransferase class 23.2 65 0.0022 20.5 2.7 20 28-47 166-185 (375)
88 2ifa_A Hypothetical protein SM 23.1 59 0.002 19.5 2.4 20 26-45 16-35 (208)
89 3n2s_A NADPH-dependent nitro/f 23.0 66 0.0023 20.9 2.8 26 26-54 16-41 (249)
90 3kwk_A Putative NADH dehydroge 23.0 72 0.0024 19.1 2.8 26 26-54 24-49 (175)
91 3h4o_A Nitroreductase family p 22.2 71 0.0024 19.8 2.7 26 25-53 33-58 (191)
92 3if2_A Aminotransferase; YP_26 22.2 58 0.002 21.4 2.4 21 29-49 219-240 (444)
93 1nla_A Transcriptional repress 22.1 53 0.0018 18.6 2.0 15 33-47 14-28 (64)
94 1g3g_A Protien kinase SPK1; FH 21.8 14 0.00048 23.2 -0.6 13 23-35 106-118 (164)
95 2r2n_A Kynurenine/alpha-aminoa 21.4 61 0.0021 21.5 2.4 18 30-47 205-222 (425)
96 2dg7_A Putative transcriptiona 21.3 47 0.0016 18.9 1.6 15 30-45 2-16 (195)
97 3qdl_A Oxygen-insensitive NADP 21.3 88 0.003 19.2 3.0 27 26-54 21-47 (210)
98 1z54_A Probable thioesterase; 21.3 65 0.0022 17.4 2.2 17 29-45 112-130 (132)
99 3gr3_A Nitroreductase; structu 21.2 67 0.0023 20.0 2.4 26 26-54 21-46 (230)
100 2kfu_A RV1827 PThr 22; FHA dom 21.1 27 0.00091 22.4 0.6 13 22-34 115-127 (162)
101 3elv_A PRE-mRNA leakage protei 21.1 20 0.0007 24.4 0.0 13 23-35 163-175 (205)
102 3gfa_A Putative nitroreductase 21.0 78 0.0027 18.8 2.7 26 26-54 15-40 (198)
103 1jg8_A L-ALLO-threonine aldola 20.9 63 0.0022 20.2 2.3 20 30-49 147-167 (347)
104 3eo8_A BLUB-like flavoprotein; 20.7 86 0.003 18.9 2.8 26 26-54 16-41 (219)
105 3e39_A Putative nitroreductase 20.5 89 0.003 18.6 2.8 26 25-53 19-44 (178)
106 1baz_A ARC repressor; transcri 20.0 83 0.0028 16.6 2.4 18 33-50 14-31 (53)
No 1
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=98.56 E-value=4.3e-08 Score=56.02 Aligned_cols=35 Identities=60% Similarity=1.032 Sum_probs=32.1
Q ss_pred CCcceecccccccCCCCCChHHHHHHHHHHHcCCC
Q psy10746 16 SHGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGGL 50 (59)
Q Consensus 16 g~~~vNQLGG~FvNGRPLP~~~R~kIveLA~~GvR 50 (59)
|+|++||+||+|+++++++.+.|.+|++|...|..
T Consensus 1 ~~~~~~~~gg~~~m~~~~s~~~r~~i~~~~~~g~s 35 (128)
T 1pdn_C 1 GQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIR 35 (128)
T ss_dssp -CEEECTTSCEEETTSCCCHHHHHHHHHHHHTTCC
T ss_pred CCchHhhhcccccCCCcCCHHHHHHHHHHHHcCCC
Confidence 68999999999999999999999999999988864
No 2
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=98.41 E-value=2.2e-07 Score=56.34 Aligned_cols=46 Identities=70% Similarity=1.046 Sum_probs=30.4
Q ss_pred ccccccchhccCCcceecccccccCCCCCChHHHHHHHHHHHcCCC
Q psy10746 5 TNVTSKNIIKWSHGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGGL 50 (59)
Q Consensus 5 tn~~~~~~~~~g~~~vNQLGG~FvNGRPLP~~~R~kIveLA~~GvR 50 (59)
.|......+++|++++|+|||+|.+++.++.+.|.+|++|...|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~s~e~r~~iv~~~~~G~s 50 (149)
T 1k78_A 5 KNYPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVR 50 (149)
T ss_dssp --------------CBCTTSCBCCTTSCCCHHHHHHHHHHHHTTCC
T ss_pred ccCCCCccccCCCCCccCCCceecCCCCCCHHHHHHHHHHHHcCCC
Confidence 4677788899999999999999999999999999999999988864
No 3
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=97.48 E-value=0.00011 Score=45.03 Aligned_cols=41 Identities=71% Similarity=1.151 Sum_probs=37.2
Q ss_pred cchhccCCcceecccccccCCCCCChHHHHHHHHHHHcCCC
Q psy10746 10 KNIIKWSHGGVNQLGGVFVNGRPLPDVVRQRIVELAHNGGL 50 (59)
Q Consensus 10 ~~~~~~g~~~vNQLGG~FvNGRPLP~~~R~kIveLA~~GvR 50 (59)
.+.+++|..+++++|+.|..++.++.+.|.+|++|...|..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~s~e~r~~ii~l~~~G~s 43 (159)
T 2k27_A 3 HNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVR 43 (159)
T ss_dssp CSCCCCSCSSCCCCCCTTSSSCSSCHHHHHHHHHHHHHTCC
T ss_pred cchhhhcchhhhhcCCcCCCCCCCCHHHHHHHHHHHHcCCC
Confidence 45678999999999999999999999999999999988853
No 4
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=92.36 E-value=0.16 Score=24.02 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=17.2
Q ss_pred CCC--CChHHHHHHHHHHHcCC
Q psy10746 30 GRP--LPDVVRQRIVELAHNGG 49 (59)
Q Consensus 30 GRP--LP~~~R~kIveLA~~Gv 49 (59)
||| |+++.|.+|++|...|.
T Consensus 1 GR~~~l~~~~~~~i~~~~~~g~ 22 (51)
T 1tc3_C 1 PRGSALSDTERAQLDVMKLLNV 22 (51)
T ss_dssp CCSCCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHcCC
Confidence 565 89999999999988886
No 5
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=86.58 E-value=0.17 Score=32.55 Aligned_cols=27 Identities=30% Similarity=0.687 Sum_probs=23.4
Q ss_pred Ccceeccccccc--CCCCCChHHHHHHHH
Q psy10746 17 HGGVNQLGGVFV--NGRPLPDVVRQRIVE 43 (59)
Q Consensus 17 ~~~vNQLGG~Fv--NGRPLP~~~R~kIve 43 (59)
..-+|+|+|-|. .-||||+..+.+|.+
T Consensus 70 ~tAlNaLAGHY~s~g~~PlPek~k~Rl~~ 98 (113)
T 2y6x_A 70 QTALNSLAGHYSSYPNRPLPEKLKARLEQ 98 (113)
T ss_dssp HHHHHHHHHHHHHCTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Confidence 467999999887 689999999999974
No 6
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=85.29 E-value=0.2 Score=32.17 Aligned_cols=27 Identities=26% Similarity=0.683 Sum_probs=23.6
Q ss_pred Ccceeccccccc--CCCCCChHHHHHHHH
Q psy10746 17 HGGVNQLGGVFV--NGRPLPDVVRQRIVE 43 (59)
Q Consensus 17 ~~~vNQLGG~Fv--NGRPLP~~~R~kIve 43 (59)
..-+|+|+|-|. .-||||+..+.+|.+
T Consensus 74 ~tAlNaLAGHY~s~g~~PlPek~k~Rl~~ 102 (115)
T 2kmf_A 74 QTALNSLAGYYTSYGARPIPEKLKKRLQL 102 (115)
T ss_dssp HHHHHHHHHHHHHHSSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Confidence 467999999887 689999999999974
No 7
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=80.47 E-value=0.87 Score=25.37 Aligned_cols=27 Identities=15% Similarity=0.348 Sum_probs=20.9
Q ss_pred ccCCCC----CChHHHHHHHHHHH-cCCCCCc
Q psy10746 27 FVNGRP----LPDVVRQRIVELAH-NGGLLSA 53 (59)
Q Consensus 27 FvNGRP----LP~~~R~kIveLA~-~GvRps~ 53 (59)
++||++ +.+++|.+|.+.|. .|-+|..
T Consensus 20 vLng~~~~~~vs~et~~rI~~aa~~lgY~pn~ 51 (65)
T 1uxc_A 20 VINGKAKQYRVSDKTVEKVMAVVREHNYHPNA 51 (65)
T ss_dssp HHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC-
T ss_pred HHcCCCCCCCCCHHHHHHHHHHHHHhCCCccH
Confidence 456664 89999999999874 7888764
No 8
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=79.34 E-value=0.66 Score=27.60 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=14.2
Q ss_pred ccccCCCCCChHHHHHHHHHHH
Q psy10746 25 GVFVNGRPLPDVVRQRIVELAH 46 (59)
Q Consensus 25 G~FvNGRPLP~~~R~kIveLA~ 46 (59)
|+.++||+-.+..|++|++-|.
T Consensus 1 ~~~~~~~~r~~~~r~~Il~aA~ 22 (211)
T 3bhq_A 1 GMKIDGETRSARKDREIIQAAT 22 (211)
T ss_dssp ------CCHHHHHHHHHHHHHH
T ss_pred CCCcccCCccHhHHHHHHHHHH
Confidence 7889999999999999998664
No 9
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=76.59 E-value=2.8 Score=23.37 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=20.0
Q ss_pred ccCCC-CCChHHHHHHHHHH-HcCCCCCc
Q psy10746 27 FVNGR-PLPDVVRQRIVELA-HNGGLLSA 53 (59)
Q Consensus 27 FvNGR-PLP~~~R~kIveLA-~~GvRps~ 53 (59)
++||+ .+.+++|.+|.+.| ..|.+|..
T Consensus 29 ~ln~~~~vs~~t~~rV~~~a~~lgY~pn~ 57 (67)
T 2l8n_A 29 ALMNPDKVSQATRNRVEKAAREVGYLPQP 57 (67)
T ss_dssp TTTCCCCSCHHHHHHHHHHHHHHCCCC--
T ss_pred HHcCCCCCCHHHHHHHHHHHHHhCCCccH
Confidence 55665 47999999999987 47877753
No 10
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=74.95 E-value=1 Score=30.40 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=19.0
Q ss_pred CChHHHHHHHHHHHcCCCCCc
Q psy10746 33 LPDVVRQRIVELAHNGGLLSA 53 (59)
Q Consensus 33 LP~~~R~kIveLA~~GvRps~ 53 (59)
=|+++-..|++||..|..||.
T Consensus 29 ~~eeVe~~I~klakkG~tpSq 49 (151)
T 3u5c_N 29 SSESVIEQIVKYARKGLTPSQ 49 (151)
T ss_dssp CHHHHHHHHHHHHTTTCCHHH
T ss_pred CHHHHHHHHHHHHHCCCCHHH
Confidence 478999999999999999984
No 11
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=74.11 E-value=1.1 Score=30.41 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=19.0
Q ss_pred CChHHHHHHHHHHHcCCCCCc
Q psy10746 33 LPDVVRQRIVELAHNGGLLSA 53 (59)
Q Consensus 33 LP~~~R~kIveLA~~GvRps~ 53 (59)
=|+++-..|++||..|.-||.
T Consensus 29 ~~eev~~~i~klakkG~~pSq 49 (158)
T 3j20_Q 29 TVEEIENLVVKLRKEGYSTAM 49 (158)
T ss_dssp CHHHHHHHHHHHHHHTCCHHH
T ss_pred CHHHHHHHHHHHHHCCCCHHH
Confidence 478999999999999999984
No 12
>2k42_B Espfu; WAsp, GBD, autoinhibition, cytoplasm, cytoskeleton, disease mutation, phosphoprotein, signaling protein; NMR {Escherichia coli O157}
Probab=73.78 E-value=4.9 Score=21.72 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=19.6
Q ss_pred CCCCChHHHHHHHHHHHcCCCCCccc
Q psy10746 30 GRPLPDVVRQRIVELAHNGGLLSAKY 55 (59)
Q Consensus 30 GRPLP~~~R~kIveLA~~GvRps~~~ 55 (59)
|||||+--..-+=-||+.+..++-+-
T Consensus 1 ~~~LPpIAQaLk~HLAaye~ska~~~ 26 (36)
T 2k42_B 1 GHMLPDVAQRLMQHLAEHGIQPARNM 26 (36)
T ss_dssp CCCCSSHHHHHHHHHHTTTCCCSSSC
T ss_pred CCCCcHHHHHHHHHHHHHhhccchhh
Confidence 79999765555667999999877443
No 13
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=73.15 E-value=1.3 Score=29.93 Aligned_cols=21 Identities=33% Similarity=0.289 Sum_probs=19.0
Q ss_pred CChHHHHHHHHHHHcCCCCCc
Q psy10746 33 LPDVVRQRIVELAHNGGLLSA 53 (59)
Q Consensus 33 LP~~~R~kIveLA~~GvRps~ 53 (59)
-|+++-..|++||..|..||.
T Consensus 31 ~~eeVe~~I~klakkG~tpSq 51 (153)
T 2xzm_O 31 TPSTVVDLSVKLAKKGLTPSQ 51 (153)
T ss_dssp CHHHHHHHHHHHHHTTCCHHH
T ss_pred CHHHHHHHHHHHHHCCCCHHH
Confidence 478999999999999999984
No 14
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=72.35 E-value=2.8 Score=19.93 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=14.7
Q ss_pred CCC--CChHHHHHHHHHHHcCC
Q psy10746 30 GRP--LPDVVRQRIVELAHNGG 49 (59)
Q Consensus 30 GRP--LP~~~R~kIveLA~~Gv 49 (59)
||| |.++.+..|++|...|.
T Consensus 1 GRp~~~~~~~~~~i~~l~~~g~ 22 (52)
T 1jko_C 1 GRPRAINKHEQEQISRLLEKGH 22 (52)
T ss_dssp CCCCSSCTTHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHcCC
Confidence 555 56667789999988874
No 15
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=68.31 E-value=4 Score=24.12 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=16.5
Q ss_pred cCCCCCChHHHHHHHHHHH
Q psy10746 28 VNGRPLPDVVRQRIVELAH 46 (59)
Q Consensus 28 vNGRPLP~~~R~kIveLA~ 46 (59)
..|+|+|.++..+|++|.+
T Consensus 60 ~~~~~~p~~~~~rv~~~~a 78 (83)
T 2ckx_A 60 RRGEPVPQDLLDRVLAAHA 78 (83)
T ss_dssp CCSSCCCHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHH
Confidence 4689999999999998864
No 16
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=56.62 E-value=3.6 Score=29.57 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=23.0
Q ss_pred cccCCCCCChHHHHHHHHHHHcCCCCCccc
Q psy10746 26 VFVNGRPLPDVVRQRIVELAHNGGLLSAKY 55 (59)
Q Consensus 26 ~FvNGRPLP~~~R~kIveLA~~GvRps~~~ 55 (59)
.||||||.-+..=.+.|+-|-+..-|..+|
T Consensus 261 ~fVNgR~v~~~~l~~ai~~~y~~~l~~~~~ 290 (348)
T 3na3_A 261 LFINHRLVESTSLRKAIETVYAAYLPKNTH 290 (348)
T ss_dssp EEETTEECCCTTHHHHHHHHHHTTSCTTCB
T ss_pred EEECCeEecCHHHHHHHHHHHHHhCcCCCc
Confidence 799999999887777777776666665554
No 17
>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I*
Probab=54.59 E-value=2.5 Score=27.76 Aligned_cols=20 Identities=40% Similarity=0.860 Sum_probs=15.2
Q ss_pred cccccCCCCC----ChHHHHHHHH
Q psy10746 24 GGVFVNGRPL----PDVVRQRIVE 43 (59)
Q Consensus 24 GG~FvNGRPL----P~~~R~kIve 43 (59)
|-+.|||+|| |+..|.+|.|
T Consensus 27 G~i~VNg~~l~~y~~~~~r~~v~~ 50 (143)
T 3u5c_Q 27 GLIKVNGSPITLVEPEILRFKVYE 50 (143)
T ss_dssp CCEEETTEETTTCSSCSTHHHHHH
T ss_pred eEEEECCCcHHHHChHHHHHHHHH
Confidence 5688999998 5667777765
No 18
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=53.92 E-value=4.9 Score=23.45 Aligned_cols=13 Identities=15% Similarity=0.233 Sum_probs=10.7
Q ss_pred cccccccCCCCCC
Q psy10746 22 QLGGVFVNGRPLP 34 (59)
Q Consensus 22 QLGG~FvNGRPLP 34 (59)
-.-|.||||++|.
T Consensus 66 S~NGt~vng~~l~ 78 (116)
T 1lgp_A 66 STSGTVINKLKVV 78 (116)
T ss_dssp SSSCCCCCCCCCC
T ss_pred CcCCcEECCEEcC
Confidence 3458999999987
No 19
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=50.78 E-value=4.7 Score=28.00 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=20.5
Q ss_pred cccCCCCCChHHHHHHHHHHHcCCCCCccc
Q psy10746 26 VFVNGRPLPDVVRQRIVELAHNGGLLSAKY 55 (59)
Q Consensus 26 ~FvNGRPLP~~~R~kIveLA~~GvRps~~~ 55 (59)
.|+||||..+..=.+.|+=|-+..-|..+|
T Consensus 258 ~fvNgR~V~~~~l~~ai~~~y~~~l~~~~~ 287 (333)
T 1b63_A 258 CYVNGRMMRDRLINHAIRQACEDKLGADQQ 287 (333)
T ss_dssp EEETTEECCCHHHHHHHHHHHHHHSSSCCC
T ss_pred EEECCEEecCHHHHHHHHHHHHhhccCCCC
Confidence 899999999877666666555444444443
No 20
>3gbh_A NAD(P)H-flavin oxidoreductase; putative NAD(P)H:FMN oxidoreductase, structural genomics, JO center for structural genomics; HET: MSE FMN PGE; 2.00A {Staphylococcus epidermidis atcc 12228} SCOP: d.90.1.0
Probab=50.78 E-value=13 Score=22.86 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=21.5
Q ss_pred ccccCCCCCChHHHHHHHHHHHcCCCCCc
Q psy10746 25 GVFVNGRPLPDVVRQRIVELAHNGGLLSA 53 (59)
Q Consensus 25 G~FvNGRPLP~~~R~kIveLA~~GvRps~ 53 (59)
..|-.++|+|+++-.+|++.|.. -||.
T Consensus 22 R~f~~~~~v~~e~l~~il~aa~~--APS~ 48 (213)
T 3gbh_A 22 KVFDENYKIPREEMDEIITKATK--APSS 48 (213)
T ss_dssp CCBCTTCCCCHHHHHHHHHHHTT--SCCG
T ss_pred hhcCCCCCCCHHHHHHHHHHHHh--CCCc
Confidence 35777799999999999999974 3554
No 21
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=50.13 E-value=16 Score=20.59 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=17.9
Q ss_pred CCCCChHHHHHHHHHHHcCCC
Q psy10746 30 GRPLPDVVRQRIVELAHNGGL 50 (59)
Q Consensus 30 GRPLP~~~R~kIveLA~~GvR 50 (59)
++.|..+.|.+|++|...|.-
T Consensus 4 ~~~~s~~~r~~i~~~~~~G~s 24 (141)
T 1u78_A 4 GSALSDTERAQLDVMKLLNVS 24 (141)
T ss_dssp SCCCCHHHHHHHHHHHHTTCC
T ss_pred cccCCHHHHHHHHHHHHcCCC
Confidence 457899999999999988863
No 22
>3gag_A Putative NADH dehydrogenase, NADPH nitroreductase; FMN-dependent nitroreductase-like fold, structural genomics; HET: MSE FMN; 1.70A {Streptococcus mutans} SCOP: d.90.1.0
Probab=49.53 E-value=14 Score=22.50 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=21.2
Q ss_pred cccCCCCCChHHHHHHHHHHHcCCCCCc
Q psy10746 26 VFVNGRPLPDVVRQRIVELAHNGGLLSA 53 (59)
Q Consensus 26 ~FvNGRPLP~~~R~kIveLA~~GvRps~ 53 (59)
.|-.++|+|+++-.+|++.|.. -||.
T Consensus 18 ~f~~~~~v~~e~l~~il~aa~~--APS~ 43 (206)
T 3gag_A 18 RFDPDAVLPNDLIKDMLEHASY--APSG 43 (206)
T ss_dssp CBCTTCCCCHHHHHHHHHHHTT--SCCG
T ss_pred ccCCCCCCCHHHHHHHHHHHHH--CCCC
Confidence 4777899999999999999965 3554
No 23
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=48.97 E-value=6.8 Score=27.85 Aligned_cols=26 Identities=23% Similarity=0.153 Sum_probs=18.8
Q ss_pred cccCCCCCChHHHHHHHHHHHcCCCC
Q psy10746 26 VFVNGRPLPDVVRQRIVELAHNGGLL 51 (59)
Q Consensus 26 ~FvNGRPLP~~~R~kIveLA~~GvRp 51 (59)
+||||||..+..=.+.|+-|-+..-|
T Consensus 290 ~fvNgR~v~~~~l~~ai~~~y~~~~~ 315 (365)
T 1h7s_A 290 FFINRRPCDPAKVCRLVNEVYHMYNR 315 (365)
T ss_dssp EEETTEEECCHHHHHHHHHHHHTTCT
T ss_pred EEECCeEecCHHHHHHHHHHHHhhCc
Confidence 89999999987755656555555544
No 24
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=47.25 E-value=16 Score=23.30 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=19.0
Q ss_pred cCCC-CCChHHHHHHHHHH-HcCCCCC
Q psy10746 28 VNGR-PLPDVVRQRIVELA-HNGGLLS 52 (59)
Q Consensus 28 vNGR-PLP~~~R~kIveLA-~~GvRps 52 (59)
+||+ ...+++|+||.+.| ..|-+|.
T Consensus 23 ln~~~~vs~~tr~rV~~aa~~lgY~pn 49 (332)
T 2hsg_A 23 VNGNPNVKPSTRKKVLETIERLGYRPN 49 (332)
T ss_dssp HTTCTTSCHHHHHHHHHHHHHHTCCSC
T ss_pred HcCCCCCCHHHHHHHHHHHHHHCCCcC
Confidence 3454 48999999999987 5677775
No 25
>3ge6_A Nitroreductase; structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: FMN; 1.85A {Exiguobacterium sibiricum 255-15} SCOP: d.90.1.0
Probab=45.14 E-value=18 Score=22.11 Aligned_cols=28 Identities=14% Similarity=0.012 Sum_probs=21.8
Q ss_pred ccccCCCCCChHHHHHHHHHHHcCCCCCcc
Q psy10746 25 GVFVNGRPLPDVVRQRIVELAHNGGLLSAK 54 (59)
Q Consensus 25 G~FvNGRPLP~~~R~kIveLA~~GvRps~~ 54 (59)
..|-..+|+|++.-.+|+|.|.. -||..
T Consensus 21 R~f~~~~~v~~e~l~~ileaa~~--APS~~ 48 (212)
T 3ge6_A 21 RNYDTNVKISKEEMTQILEEATL--APSSV 48 (212)
T ss_dssp CCBCTTCCCCHHHHHHHHHHHTT--SCCGG
T ss_pred HhcCCCCCCCHHHHHHHHHHHHH--CcCcC
Confidence 34767789999999999999973 35543
No 26
>2j8p_A Cleavage stimulation factor 64 kDa subunit; cleavage/polyadenylation, alternative splicing RNA15, PCF11, CSTF-64, RNA-binding, nuclear protein; NMR {Homo sapiens}
Probab=44.67 E-value=9.8 Score=21.21 Aligned_cols=15 Identities=40% Similarity=0.432 Sum_probs=12.9
Q ss_pred CCChHHHHHHHHHHH
Q psy10746 32 PLPDVVRQRIVELAH 46 (59)
Q Consensus 32 PLP~~~R~kIveLA~ 46 (59)
-||++.|..|++|-+
T Consensus 26 ~LPp~qR~qI~~LR~ 40 (49)
T 2j8p_A 26 MLPPEQRQSILILKE 40 (49)
T ss_dssp TSCHHHHTHHHHHHH
T ss_pred hCCHHHHHHHHHHHH
Confidence 389999999999864
No 27
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=44.62 E-value=6.1 Score=23.43 Aligned_cols=12 Identities=17% Similarity=0.468 Sum_probs=10.5
Q ss_pred ccccccCCCCCC
Q psy10746 23 LGGVFVNGRPLP 34 (59)
Q Consensus 23 LGG~FvNGRPLP 34 (59)
-.|+||||+++.
T Consensus 79 ~ngt~vNg~~i~ 90 (120)
T 1wln_A 79 DAETYVDGQRIS 90 (120)
T ss_dssp SSCEEETSCBCS
T ss_pred CCCEEECCEEcC
Confidence 468999999997
No 28
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=43.62 E-value=6.9 Score=22.92 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=10.2
Q ss_pred ccccccCCCCCC
Q psy10746 23 LGGVFVNGRPLP 34 (59)
Q Consensus 23 LGG~FvNGRPLP 34 (59)
.-|.||||++|.
T Consensus 75 ~nGT~vng~~l~ 86 (118)
T 1uht_A 75 SNGTLLNSNALD 86 (118)
T ss_dssp SSCCEESSSBCC
T ss_pred CCCeEECCEECC
Confidence 348999999987
No 29
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=43.38 E-value=16 Score=22.56 Aligned_cols=19 Identities=21% Similarity=0.504 Sum_probs=16.6
Q ss_pred cCCCCCChHHHHHHHHHHH
Q psy10746 28 VNGRPLPDVVRQRIVELAH 46 (59)
Q Consensus 28 vNGRPLP~~~R~kIveLA~ 46 (59)
-.|.|+|.++-.+|.+|.+
T Consensus 73 ~rg~~~P~~~l~rv~~~~~ 91 (105)
T 2aje_A 73 RRGEPVPQELLNRVLNAHG 91 (105)
T ss_dssp TTCCSCCCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHH
Confidence 3689999999999999864
No 30
>3j20_K 30S ribosomal protein S9P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.52 E-value=5.6 Score=25.85 Aligned_cols=20 Identities=45% Similarity=0.936 Sum_probs=14.1
Q ss_pred cccccCCCCC----ChHHHHHHHH
Q psy10746 24 GGVFVNGRPL----PDVVRQRIVE 43 (59)
Q Consensus 24 GG~FvNGRPL----P~~~R~kIve 43 (59)
|-+.|||+|| |+..|.+|.|
T Consensus 24 G~i~VNg~~l~~y~~~~~r~~i~~ 47 (135)
T 3j20_K 24 GRVRINGKPVEIIEPEIARFTILE 47 (135)
T ss_dssp CCEEETTEEGGGCSCSHHHHHHSH
T ss_pred eEEEECCeeHHHHChHHHHHHhhC
Confidence 5578999998 3556666643
No 31
>3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens}
Probab=40.83 E-value=18 Score=22.19 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=18.1
Q ss_pred cccCCCCC---ChHHHHHHHHHHHcCC
Q psy10746 26 VFVNGRPL---PDVVRQRIVELAHNGG 49 (59)
Q Consensus 26 ~FvNGRPL---P~~~R~kIveLA~~Gv 49 (59)
.+.||+.| |-..|+++++=....+
T Consensus 103 L~l~G~~L~~~pl~eRr~~L~~l~~~~ 129 (139)
T 3vnn_A 103 LMVNNKKLGHETLRKRYEILSSIFTPI 129 (139)
T ss_dssp EEETTEECSSSCHHHHHHHHHHHCCCB
T ss_pred EeECCcCcccCCHHHHHHHHHHHhhcC
Confidence 35788766 9999999998665444
No 32
>3qpi_A Chlorite dismutase; oxygen, oxidoreductase, chlorite O(2)-lyase, cytoplasma; HET: HEM; 2.10A {Nitrobacter winogradskyi}
Probab=40.26 E-value=12 Score=26.10 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=22.0
Q ss_pred CChHHHHHHHHHHHcCCCCCccc-ccc
Q psy10746 33 LPDVVRQRIVELAHNGGLLSAKY-SHV 58 (59)
Q Consensus 33 LP~~~R~kIveLA~~GvRps~~~-~~~ 58 (59)
||++.|++|.|=-..+++++.+| -+|
T Consensus 99 L~~eERr~mme~~s~Hi~~gl~Ylp~V 125 (189)
T 3qpi_A 99 MTQDERRAIFEDKSHHIAASLKYLPAI 125 (189)
T ss_dssp SCHHHHHHHHTTTTCTTTTTGGGTTTS
T ss_pred CCHHHHHHHHhccchhhhhhhcccHHH
Confidence 89999999998777888999888 444
No 33
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=40.06 E-value=5.7 Score=24.56 Aligned_cols=11 Identities=36% Similarity=0.558 Sum_probs=9.7
Q ss_pred cccccCCCCCC
Q psy10746 24 GGVFVNGRPLP 34 (59)
Q Consensus 24 GG~FvNGRPLP 34 (59)
-|.||||++|+
T Consensus 103 NGT~VNg~~i~ 113 (149)
T 1gxc_A 103 NGTFVNTELVG 113 (149)
T ss_dssp SCEEETTEECC
T ss_pred CCeEECCEECC
Confidence 48999999987
No 34
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=39.94 E-value=17 Score=17.99 Aligned_cols=17 Identities=29% Similarity=0.184 Sum_probs=13.4
Q ss_pred CC--hHHHHHHHHHHHcCC
Q psy10746 33 LP--DVVRQRIVELAHNGG 49 (59)
Q Consensus 33 LP--~~~R~kIveLA~~Gv 49 (59)
|+ ++....|.+|...|.
T Consensus 14 l~~~~~~~~~i~~l~~~g~ 32 (55)
T 2x48_A 14 VESEDDLVSVAHELAKMGY 32 (55)
T ss_dssp ECSHHHHHHHHHHHHHTTC
T ss_pred HhcCHHHHHHHHHHHHcCC
Confidence 66 777888888877775
No 35
>2xzm_I RPS16E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_I
Probab=39.74 E-value=7.6 Score=25.56 Aligned_cols=20 Identities=40% Similarity=0.810 Sum_probs=14.4
Q ss_pred cccccCCCCC----ChHHHHHHHH
Q psy10746 24 GGVFVNGRPL----PDVVRQRIVE 43 (59)
Q Consensus 24 GG~FvNGRPL----P~~~R~kIve 43 (59)
|-+.|||+|| |+..|.+|.|
T Consensus 29 G~i~VNg~~l~yf~~~~~r~~v~~ 52 (145)
T 2xzm_I 29 GLLKVNGSPIDMINPQILQAKIYE 52 (145)
T ss_dssp CEEEESSSBGGGCSSTTTHHHHHH
T ss_pred eEEEECCEeHHHcCcHHHHHHHHH
Confidence 7788999998 4455666654
No 36
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=39.35 E-value=6.4 Score=22.72 Aligned_cols=12 Identities=42% Similarity=0.808 Sum_probs=10.1
Q ss_pred cccccCCCCCCh
Q psy10746 24 GGVFVNGRPLPD 35 (59)
Q Consensus 24 GG~FvNGRPLP~ 35 (59)
.|.||||+++..
T Consensus 69 nGt~vng~~i~~ 80 (106)
T 3gqs_A 69 NGVIVEGRKIEH 80 (106)
T ss_dssp SCCEETTEECSS
T ss_pred CCeEECCEECCC
Confidence 489999999874
No 37
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=38.82 E-value=19 Score=23.14 Aligned_cols=22 Identities=14% Similarity=-0.079 Sum_probs=17.6
Q ss_pred CCChHHHHHHHHHH-HcCCCCCc
Q psy10746 32 PLPDVVRQRIVELA-HNGGLLSA 53 (59)
Q Consensus 32 PLP~~~R~kIveLA-~~GvRps~ 53 (59)
.+.+++|+||.+.| ..|-+|..
T Consensus 26 ~vs~~tr~rV~~~a~~lgY~pn~ 48 (340)
T 1qpz_A 26 FVAEETRNAVWAAIKELHYSPSA 48 (340)
T ss_dssp CCCHHHHHHHHHHHHHHTCCCCH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCH
Confidence 48899999999988 46777753
No 38
>2hlj_A Hypothetical protein; putative thioesterase, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.00A {Pseudomonas putida} SCOP: d.38.1.1
Probab=38.77 E-value=48 Score=18.71 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=14.4
Q ss_pred CCChHHHHHHHHHHHcCC
Q psy10746 32 PLPDVVRQRIVELAHNGG 49 (59)
Q Consensus 32 PLP~~~R~kIveLA~~Gv 49 (59)
|+|+++|..+-++.....
T Consensus 124 ~ip~~~~~~l~~~~~~~~ 141 (157)
T 2hlj_A 124 PFGHTTVCRLNHLVEQQE 141 (157)
T ss_dssp CCCHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHhhh
Confidence 588999999988876544
No 39
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=38.74 E-value=6.6 Score=22.35 Aligned_cols=11 Identities=36% Similarity=0.637 Sum_probs=9.6
Q ss_pred cccccCCCCCC
Q psy10746 24 GGVFVNGRPLP 34 (59)
Q Consensus 24 GG~FvNGRPLP 34 (59)
.|.|+||++++
T Consensus 65 nGt~vng~~i~ 75 (100)
T 3po8_A 65 NGTTVNNAPVQ 75 (100)
T ss_dssp SCCEETTEECS
T ss_pred CCEEECCEECc
Confidence 48999999886
No 40
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=38.00 E-value=27 Score=22.38 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=19.1
Q ss_pred CCC-CCChHHHHHHHHHH-HcCCCCCc
Q psy10746 29 NGR-PLPDVVRQRIVELA-HNGGLLSA 53 (59)
Q Consensus 29 NGR-PLP~~~R~kIveLA-~~GvRps~ 53 (59)
||+ ...+++|+||.+.| ..|-+|..
T Consensus 32 n~~~~vs~~tr~rV~~~~~~lgY~pn~ 58 (344)
T 3kjx_A 32 RNRGDVSDATRARVLAAAKELGYVPNK 58 (344)
T ss_dssp TTCSCCCHHHHHHHHHHHHHHTCCCCC
T ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCCH
Confidence 443 47999999999988 46777754
No 41
>3qy2_A Cyclin-dependent kinases regulatory subunit; protein kinase activator, ubiquitin binding, transcription, cell cycle, transferase RE; HET: FLC; 2.59A {Saccharomyces cerevisiae}
Probab=37.52 E-value=12 Score=24.29 Aligned_cols=27 Identities=37% Similarity=0.607 Sum_probs=23.3
Q ss_pred CCCCCChHHHHHHHHHHHcCCCCCcccc
Q psy10746 29 NGRPLPDVVRQRIVELAHNGGLLSAKYS 56 (59)
Q Consensus 29 NGRPLP~~~R~kIveLA~~GvRps~~~~ 56 (59)
.+|+|.++.|.+|-|+ ...|-=|.||+
T Consensus 9 ~~~~l~~~~r~~~~~~-~~~I~YS~KY~ 35 (117)
T 3qy2_A 9 QGRKLTDQERARVLEF-QDSIHYSPRYS 35 (117)
T ss_dssp CSCCCCHHHHHHHHTT-GGGCEECCCEE
T ss_pred CcccCCHHHHHHHHhh-hccceecCCcc
Confidence 6899999999999986 56688888876
No 42
>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ...
Probab=36.70 E-value=2.3 Score=27.55 Aligned_cols=11 Identities=45% Similarity=0.679 Sum_probs=9.3
Q ss_pred cccccCCCCCC
Q psy10746 24 GGVFVNGRPLP 34 (59)
Q Consensus 24 GG~FvNGRPLP 34 (59)
|-+.|||+||-
T Consensus 24 G~i~VNg~~l~ 34 (128)
T 2vqe_I 24 GKVTVNGQDFN 34 (128)
T ss_dssp CCEEESSSBHH
T ss_pred eEEEECCCcHH
Confidence 67889999983
No 43
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=36.61 E-value=28 Score=21.85 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=18.4
Q ss_pred cCCCCCChHHHHHHHHHHHcCCCCCcc
Q psy10746 28 VNGRPLPDVVRQRIVELAHNGGLLSAK 54 (59)
Q Consensus 28 vNGRPLP~~~R~kIveLA~~GvRps~~ 54 (59)
.+=|||.++.|.++++.|+. +.|+..
T Consensus 22 ~~r~~~t~~~k~~a~~~A~~-~~s~~P 47 (146)
T 4i1k_A 22 ARKRTVTAEERERAINAAKT-FEPTNP 47 (146)
T ss_dssp ----CCCHHHHHHHHHHHHH-CCCSSC
T ss_pred cCCCCCCHHHHHHHHHHHHH-cCCCCC
Confidence 46789999999999999976 666543
No 44
>3bem_A Putative NAD(P)H nitroreductase YDFN; 2632848, putative nitroreductase YDFN, structural genomics, center for structural genomics, JCSG; HET: MSE FMN; 1.65A {Bacillus subtilis}
Probab=36.07 E-value=29 Score=21.39 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=18.8
Q ss_pred cccCCCCCChHHHHHHHHHHHc
Q psy10746 26 VFVNGRPLPDVVRQRIVELAHN 47 (59)
Q Consensus 26 ~FvNGRPLP~~~R~kIveLA~~ 47 (59)
.|-.++|+|+++-.+|++.|..
T Consensus 28 ~f~~~~~V~~e~l~~il~aa~~ 49 (218)
T 3bem_A 28 NFLSGHPITKEDLNEMFELVAL 49 (218)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTT
T ss_pred ccCCCCCCCHHHHHHHHHHHHH
Confidence 4655799999999999999963
No 45
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=35.54 E-value=15 Score=26.42 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=18.3
Q ss_pred cccCCCCCChHHHHHHHHHHHcCC
Q psy10746 26 VFVNGRPLPDVVRQRIVELAHNGG 49 (59)
Q Consensus 26 ~FvNGRPLP~~~R~kIveLA~~Gv 49 (59)
+||||||.-+..=.+.|+-|-+..
T Consensus 285 ~fVNgR~v~~~~l~~ai~~~y~~~ 308 (367)
T 3h4l_A 285 IYVNKRPVEYSTLLKCCNEVYKTF 308 (367)
T ss_dssp EEETTEEECCHHHHHHHHHHHHTT
T ss_pred EEECCCEecCHHHHHHHHHHHHhc
Confidence 799999998877667666665554
No 46
>1vfr_A NAD(P)H\:FMN oxidoreductase; bioluminescence; HET: FMN; 1.80A {Aliivibrio fischeri} SCOP: d.90.1.1 PDB: 1v5y_A* 1v5z_A*
Probab=35.39 E-value=36 Score=20.53 Aligned_cols=26 Identities=8% Similarity=-0.005 Sum_probs=21.0
Q ss_pred cccCCCCCChHHHHHHHHHHHcCCCCCc
Q psy10746 26 VFVNGRPLPDVVRQRIVELAHNGGLLSA 53 (59)
Q Consensus 26 ~FvNGRPLP~~~R~kIveLA~~GvRps~ 53 (59)
.|-.++|+|+++-.+|+|.|.. -||+
T Consensus 17 ~f~~~~~v~~e~l~~il~aa~~--APS~ 42 (218)
T 1vfr_A 17 KYDPSKKVSQEDLAVLLEALRL--SASS 42 (218)
T ss_dssp SBCTTCCCCHHHHHHHHHHHHT--CCCG
T ss_pred hcCCCCCCCHHHHHHHHHHHHh--Cccc
Confidence 4666899999999999999974 4554
No 47
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=35.37 E-value=7.5 Score=23.99 Aligned_cols=12 Identities=42% Similarity=0.747 Sum_probs=10.0
Q ss_pred ccccccCCCCCC
Q psy10746 23 LGGVFVNGRPLP 34 (59)
Q Consensus 23 LGG~FvNGRPLP 34 (59)
--|.||||++|.
T Consensus 86 ~NGT~VNg~~i~ 97 (151)
T 2jqj_A 86 RNGTFINGNRLV 97 (151)
T ss_dssp SSCEEETTEECC
T ss_pred CCCeEECCEEcC
Confidence 458999999986
No 48
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=35.30 E-value=7.4 Score=24.08 Aligned_cols=12 Identities=33% Similarity=0.601 Sum_probs=10.1
Q ss_pred cccccCCCCCCh
Q psy10746 24 GGVFVNGRPLPD 35 (59)
Q Consensus 24 GG~FvNGRPLP~ 35 (59)
.|.||||+++..
T Consensus 90 ngt~VNG~~V~~ 101 (124)
T 3fm8_A 90 TRTFVNGSSVSS 101 (124)
T ss_dssp CCEEETTEECCS
T ss_pred CCEEECCEEcCC
Confidence 489999999863
No 49
>2h0u_A NADPH-flavin oxidoreductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: FMN; 1.90A {Helicobacter pylori}
Probab=35.23 E-value=36 Score=20.58 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=18.9
Q ss_pred cccCCCCCChHHHHHHHHHHHc
Q psy10746 26 VFVNGRPLPDVVRQRIVELAHN 47 (59)
Q Consensus 26 ~FvNGRPLP~~~R~kIveLA~~ 47 (59)
.|-.++|+|++.-.+|++.|..
T Consensus 18 ~f~~~~~v~~e~l~~il~aa~~ 39 (217)
T 2h0u_A 18 KYDPNRRISQKDWEALVEVGRL 39 (217)
T ss_dssp CBCTTCCCCHHHHHHHHHHHHT
T ss_pred hcCCCCCCCHHHHHHHHHHHhh
Confidence 4655899999999999999974
No 50
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=35.12 E-value=24 Score=22.95 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=17.3
Q ss_pred cCCCCCChHHHHHHHHHHHc
Q psy10746 28 VNGRPLPDVVRQRIVELAHN 47 (59)
Q Consensus 28 vNGRPLP~~~R~kIveLA~~ 47 (59)
--||||-.+-|+.+|.+|..
T Consensus 28 ~~~~plTEERRKeLVK~akk 47 (121)
T 3lf9_A 28 RTGGGGTEERRKDLVKIVRG 47 (121)
T ss_dssp CCSSBCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 35999999999999998853
No 51
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=34.55 E-value=27 Score=18.77 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=15.3
Q ss_pred CCCh-HHHHHHHHHHHcCCCC
Q psy10746 32 PLPD-VVRQRIVELAHNGGLL 51 (59)
Q Consensus 32 PLP~-~~R~kIveLA~~GvRp 51 (59)
|||+ +.|.+|++....+...
T Consensus 1 plPd~~~R~~Il~~~l~~~~~ 21 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNL 21 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEE
T ss_pred CcCCHHHHHHHHHHHhcCCCC
Confidence 6776 5799999988777654
No 52
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=34.47 E-value=7.9 Score=23.74 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=11.1
Q ss_pred cccccccCCCCCCh
Q psy10746 22 QLGGVFVNGRPLPD 35 (59)
Q Consensus 22 QLGG~FvNGRPLP~ 35 (59)
-.-|.||||+.|+.
T Consensus 92 StNGT~vNg~ri~~ 105 (130)
T 4h87_A 92 STHGTFLNKTRIPP 105 (130)
T ss_dssp CSSCEEETTEECCT
T ss_pred CCCceEECCEECCC
Confidence 34599999999873
No 53
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=34.15 E-value=8.6 Score=24.17 Aligned_cols=13 Identities=8% Similarity=0.166 Sum_probs=10.5
Q ss_pred ccccccCCCCCCh
Q psy10746 23 LGGVFVNGRPLPD 35 (59)
Q Consensus 23 LGG~FvNGRPLP~ 35 (59)
--|.||||++|..
T Consensus 82 tNGT~VNg~ri~~ 94 (158)
T 1dmz_A 82 TNVSYLNNNRMIQ 94 (158)
T ss_dssp TTCCEETTEECCS
T ss_pred cCCeEECCEEcCC
Confidence 4589999999873
No 54
>2b67_A COG0778: nitroreductase; alpha-beta sandwich, FMN binding pocket, structural genomics protein structure initiative; HET: MSE FMN; 2.05A {Streptococcus pneumoniae} SCOP: d.90.1.1
Probab=34.06 E-value=32 Score=20.67 Aligned_cols=26 Identities=19% Similarity=0.132 Sum_probs=20.4
Q ss_pred cccCCCCCChHHHHHHHHHHHcCCCCCcc
Q psy10746 26 VFVNGRPLPDVVRQRIVELAHNGGLLSAK 54 (59)
Q Consensus 26 ~FvNGRPLP~~~R~kIveLA~~GvRps~~ 54 (59)
.|- ++|+|+++-.+|++.|.. -||..
T Consensus 18 ~f~-~~~v~~e~l~~il~aa~~--APS~~ 43 (204)
T 2b67_A 18 HFT-DKLVDPKDVRTAIEIATL--APSAH 43 (204)
T ss_dssp CBC-SCCCCHHHHHHHHHHHTT--SCCGG
T ss_pred ccC-CCCCCHHHHHHHHHHHHh--CcCcc
Confidence 466 899999999999999953 35543
No 55
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=33.18 E-value=9.1 Score=22.87 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=10.5
Q ss_pred ccccccCCCCCCh
Q psy10746 23 LGGVFVNGRPLPD 35 (59)
Q Consensus 23 LGG~FvNGRPLP~ 35 (59)
.-|.||||++|..
T Consensus 78 ~NGT~vNg~~l~~ 90 (127)
T 1g6g_A 78 TNGTWLNGQKVEK 90 (127)
T ss_dssp SSCCEETTEECCT
T ss_pred cCCeEECCEEcCC
Confidence 4589999999873
No 56
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=32.74 E-value=12 Score=22.98 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=11.5
Q ss_pred ecccccccCCCCCCh
Q psy10746 21 NQLGGVFVNGRPLPD 35 (59)
Q Consensus 21 NQLGG~FvNGRPLP~ 35 (59)
+-.-|.||||++|+.
T Consensus 80 ~S~NGT~vNg~~i~~ 94 (145)
T 2csw_A 80 KSLNGVWLNRARLEP 94 (145)
T ss_dssp SCSSCEEESSCBCCB
T ss_pred CCCCCeEECCEECCC
Confidence 344589999999974
No 57
>2hay_A Putative NAD(P)H-flavin oxidoreductase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE FMN; 2.11A {Streptococcus pyogenes serotype M1}
Probab=32.49 E-value=39 Score=20.60 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=18.5
Q ss_pred cccCCCCCChHHHHHHHHHHHc
Q psy10746 26 VFVNGRPLPDVVRQRIVELAHN 47 (59)
Q Consensus 26 ~FvNGRPLP~~~R~kIveLA~~ 47 (59)
.|- ++|+|++.-.+|+|.|..
T Consensus 24 ~f~-~~~v~~e~l~~il~aa~~ 44 (224)
T 2hay_A 24 VYK-EEKISDEDLALILDAAWL 44 (224)
T ss_dssp CBC-SCCCCHHHHHHHHHHHHT
T ss_pred ccC-CCCCCHHHHHHHHHHHHh
Confidence 466 899999999999999974
No 58
>1ytv_M V1AR, vasopressin V1A receptor; GPCR, fusion protein, maltose- binding protein, sugar binding protein, hormone receptor; HET: MAL; 1.80A {Homo sapiens}
Probab=32.44 E-value=13 Score=22.94 Aligned_cols=19 Identities=5% Similarity=-0.144 Sum_probs=14.5
Q ss_pred ecccccccCCCCCChHHHH
Q psy10746 21 NQLGGVFVNGRPLPDVVRQ 39 (59)
Q Consensus 21 NQLGG~FvNGRPLP~~~R~ 39 (59)
|--.-+|.||++||+.+|.
T Consensus 10 ~~~~~MgFnshLl~~~lr~ 28 (84)
T 1ytv_M 10 NNNNNLGIEENLYFQGQGS 28 (84)
T ss_pred Ccccccccccccchhhhhc
Confidence 3345689999999987763
No 59
>1icr_A Oxygen-insensitive NAD(P)H nitroreductase; alpha-beta, oxidoreductase; HET: FMN; 1.70A {Escherichia coli} SCOP: d.90.1.1 PDB: 1ds7_A* 1icu_A* 1icv_A* 1idt_A* 1oo5_A* 1oo6_A* 1oon_A* 1ooq_A* 1yki_A* 1ylr_A* 1ylu_A* 3hzn_A* 1kqb_A* 1kqc_A* 1kqd_A* 1nec_A*
Probab=32.12 E-value=42 Score=20.12 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=18.9
Q ss_pred cccCCCCCChHHHHHHHHHHHc
Q psy10746 26 VFVNGRPLPDVVRQRIVELAHN 47 (59)
Q Consensus 26 ~FvNGRPLP~~~R~kIveLA~~ 47 (59)
.|-.++|+|++.-.+|+|.|..
T Consensus 15 ~f~~~~~v~~e~l~~il~aa~~ 36 (217)
T 1icr_A 15 AFDASKKLTPEQAEQIKTLLQY 36 (217)
T ss_dssp CBCTTCCCCHHHHHHHHHHHHH
T ss_pred hcCCCCCCCHHHHHHHHHHHHH
Confidence 4655799999999999999975
No 60
>3m5k_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structural genomics, joint center for structural genomics; HET: MSE FMN; 1.86A {Parabacteroides distasonis}
Probab=32.09 E-value=41 Score=20.12 Aligned_cols=26 Identities=12% Similarity=0.258 Sum_probs=20.7
Q ss_pred cccCCCCCChHHHHHHHHHHHcCCCCCcc
Q psy10746 26 VFVNGRPLPDVVRQRIVELAHNGGLLSAK 54 (59)
Q Consensus 26 ~FvNGRPLP~~~R~kIveLA~~GvRps~~ 54 (59)
.|- ++|+|++.-.+|++.|.. -||+.
T Consensus 20 ~f~-~~~v~~e~l~~il~aa~~--APS~~ 45 (172)
T 3m5k_A 20 KYK-DRPVEKEKIDKLIRAGMA--APSSR 45 (172)
T ss_dssp CBC-SSCCCHHHHHHHHHHHHT--SCCGG
T ss_pred CcC-CCCCCHHHHHHHHHHHHh--CcCcC
Confidence 465 799999999999999985 25543
No 61
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=30.37 E-value=11 Score=24.02 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=10.7
Q ss_pred ccccccCCCCCCh
Q psy10746 23 LGGVFVNGRPLPD 35 (59)
Q Consensus 23 LGG~FvNGRPLP~ 35 (59)
.-|.||||++|+.
T Consensus 116 tNGT~VNg~ri~~ 128 (158)
T 3els_A 116 SNGTCLNNVVIPG 128 (158)
T ss_dssp SSCCEETTEECCT
T ss_pred CCccEECCEEcCC
Confidence 3589999999984
No 62
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=30.36 E-value=11 Score=22.40 Aligned_cols=12 Identities=25% Similarity=0.246 Sum_probs=10.2
Q ss_pred ccccccCCCCCC
Q psy10746 23 LGGVFVNGRPLP 34 (59)
Q Consensus 23 LGG~FvNGRPLP 34 (59)
--|.||||+++.
T Consensus 74 ~nGt~vNg~~i~ 85 (128)
T 1r21_A 74 TNPTQVNGSVID 85 (128)
T ss_dssp SSCCEETTEECS
T ss_pred CCCEEECCEECC
Confidence 458999999987
No 63
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=30.25 E-value=10 Score=23.03 Aligned_cols=13 Identities=38% Similarity=0.613 Sum_probs=10.5
Q ss_pred ccccccCCCCCCh
Q psy10746 23 LGGVFVNGRPLPD 35 (59)
Q Consensus 23 LGG~FvNGRPLP~ 35 (59)
.-|.||||++|..
T Consensus 74 ~NGT~vNg~~l~~ 86 (138)
T 2pie_A 74 LNGVWLNRARLEP 86 (138)
T ss_dssp SSCEEETTEECCT
T ss_pred CCCeEECCEEcCC
Confidence 4489999999873
No 64
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=30.22 E-value=9.9 Score=23.08 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=10.5
Q ss_pred cccccccCCCCCC
Q psy10746 22 QLGGVFVNGRPLP 34 (59)
Q Consensus 22 QLGG~FvNGRPLP 34 (59)
-.-|.||||++|.
T Consensus 98 S~NGT~vNg~~l~ 110 (140)
T 2jpe_A 98 STHGTFLGHIRLE 110 (140)
T ss_dssp CSSCEESSSCEEC
T ss_pred CCCCeEECCEECC
Confidence 3458999999886
No 65
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=29.77 E-value=8.2 Score=23.55 Aligned_cols=11 Identities=27% Similarity=0.836 Sum_probs=9.6
Q ss_pred cccccCCCCCC
Q psy10746 24 GGVFVNGRPLP 34 (59)
Q Consensus 24 GG~FvNGRPLP 34 (59)
-|.||||+++.
T Consensus 82 NGT~vNg~~i~ 92 (131)
T 3hx1_A 82 NGLMINGKKVQ 92 (131)
T ss_dssp SCEEETTEEES
T ss_pred CceEECCEEeE
Confidence 49999999886
No 66
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=29.65 E-value=11 Score=24.45 Aligned_cols=12 Identities=8% Similarity=0.155 Sum_probs=10.2
Q ss_pred ccccccCCCCCC
Q psy10746 23 LGGVFVNGRPLP 34 (59)
Q Consensus 23 LGG~FvNGRPLP 34 (59)
--|.||||++|.
T Consensus 106 tNGT~VNg~ri~ 117 (182)
T 1qu5_A 106 TNVSYLNNNRMI 117 (182)
T ss_dssp SSCCEETTEECC
T ss_pred cCCeEECCEEcC
Confidence 458999999987
No 67
>1du2_A DNA polymerase III; alpha helix, transferase; HET: DNA; NMR {Escherichia coli} SCOP: a.237.1.1 PDB: 2ae9_A* 2axd_S* 2xy8_B*
Probab=29.59 E-value=28 Score=20.79 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=20.4
Q ss_pred CCCCCChHHHHHH-HHHHHcCCCCCccc
Q psy10746 29 NGRPLPDVVRQRI-VELAHNGGLLSAKY 55 (59)
Q Consensus 29 NGRPLP~~~R~kI-veLA~~GvRps~~~ 55 (59)
|=--||.+.|.|| |+|+++|+-=-++|
T Consensus 4 NLa~l~~ee~~Ki~vDl~AS~vafker~ 31 (76)
T 1du2_A 4 NLAKLDQTEMDKVNVDLAAAGVAFKERY 31 (76)
T ss_dssp CSCCSCCHHHHHHHHHHHCSSSTTCCSS
T ss_pred hhhhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3346899999998 89999998644444
No 68
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=29.17 E-value=12 Score=22.82 Aligned_cols=12 Identities=33% Similarity=0.689 Sum_probs=10.2
Q ss_pred ccccccCCCCCC
Q psy10746 23 LGGVFVNGRPLP 34 (59)
Q Consensus 23 LGG~FvNGRPLP 34 (59)
.-|.||||++++
T Consensus 75 ~NGT~vNg~~i~ 86 (139)
T 1mzk_A 75 LNGTLVNSHSIS 86 (139)
T ss_dssp SSCCEETTEESS
T ss_pred CCCEEECCEECc
Confidence 458999999987
No 69
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=28.62 E-value=14 Score=20.82 Aligned_cols=13 Identities=46% Similarity=0.935 Sum_probs=10.8
Q ss_pred ccccCCCCCChHH
Q psy10746 25 GVFVNGRPLPDVV 37 (59)
Q Consensus 25 G~FvNGRPLP~~~ 37 (59)
=+++||+++|.+.
T Consensus 38 vV~vNG~~v~~d~ 50 (74)
T 2l32_A 38 TVLVDGRPVPEDQ 50 (74)
T ss_dssp CEECCCCCCCTTS
T ss_pred EEEECCEECCHHH
Confidence 3899999999765
No 70
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=28.47 E-value=12 Score=21.97 Aligned_cols=12 Identities=42% Similarity=0.872 Sum_probs=10.1
Q ss_pred ccccccCCCCCC
Q psy10746 23 LGGVFVNGRPLP 34 (59)
Q Consensus 23 LGG~FvNGRPLP 34 (59)
--|.||||+++.
T Consensus 72 ~nGt~vng~~i~ 83 (115)
T 2xt9_B 72 LNGTYVNREPVD 83 (115)
T ss_dssp SSCEEETTEECS
T ss_pred CCCeEECCEEcc
Confidence 458999999886
No 71
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=28.29 E-value=11 Score=23.64 Aligned_cols=12 Identities=25% Similarity=0.531 Sum_probs=10.0
Q ss_pred ccccccCCCCCC
Q psy10746 23 LGGVFVNGRPLP 34 (59)
Q Consensus 23 LGG~FvNGRPLP 34 (59)
-.|+||||.++.
T Consensus 109 ~ngt~VNG~~i~ 120 (154)
T 4ejq_A 109 GADTYVNGKKVT 120 (154)
T ss_dssp TCCEEETTEECC
T ss_pred CCceEECCEEcC
Confidence 458999999985
No 72
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=28.19 E-value=51 Score=18.65 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=16.0
Q ss_pred CCCChHHHHHHHHHH-HcCC
Q psy10746 31 RPLPDVVRQRIVELA-HNGG 49 (59)
Q Consensus 31 RPLP~~~R~kIveLA-~~Gv 49 (59)
+.++++.|.+||++. ..|.
T Consensus 6 ~~~t~e~K~~iv~~~~~~g~ 25 (131)
T 1hlv_A 6 RQLTFREKSRIIQEVEENPD 25 (131)
T ss_dssp CCCCHHHHHHHHHHHHHCTT
T ss_pred eeCCHHHHHHHHHHHHHCCC
Confidence 579999999999998 5654
No 73
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=27.89 E-value=22 Score=23.02 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=15.2
Q ss_pred CCChHHHHHHHHHH-HcCCC-CC
Q psy10746 32 PLPDVVRQRIVELA-HNGGL-LS 52 (59)
Q Consensus 32 PLP~~~R~kIveLA-~~GvR-ps 52 (59)
...+++|+||.+.| ..|-+ |.
T Consensus 35 ~Vs~~tr~rV~~~a~~lgY~~pn 57 (366)
T 3h5t_A 35 QLSAELRQRILDTAEDMGYLGPD 57 (366)
T ss_dssp GSCHHHHHHHHHHHHHTTC----
T ss_pred CCCHHHHHHHHHHHHHhCCCCCC
Confidence 47899999999988 55776 64
No 74
>2cye_A TTHA1846, putative thioesterase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: COA; 1.90A {Thermus thermophilus} SCOP: d.38.1.1
Probab=26.19 E-value=50 Score=18.02 Aligned_cols=17 Identities=53% Similarity=1.056 Sum_probs=13.4
Q ss_pred CCC--CCChHHHHHHHHHH
Q psy10746 29 NGR--PLPDVVRQRIVELA 45 (59)
Q Consensus 29 NGR--PLP~~~R~kIveLA 45 (59)
+|| |+|+++|.++-++.
T Consensus 111 ~~~~~~~p~~~~~~l~~~~ 129 (133)
T 2cye_A 111 GGRPAPLPEAIRERIRALE 129 (133)
T ss_dssp TTEECCCCHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHhh
Confidence 455 68999999987765
No 75
>3pxv_A Nitroreductase; flavoprotein, FMN-dependent, joint center for structural genomics, protein structure initiative, PSI-biology; HET: MSE FMN; 2.30A {Desulfitobacterium hafniense}
Probab=26.18 E-value=48 Score=19.82 Aligned_cols=26 Identities=27% Similarity=0.112 Sum_probs=20.6
Q ss_pred cccCCCCCChHHHHHHHHHHHcCCCCCcc
Q psy10746 26 VFVNGRPLPDVVRQRIVELAHNGGLLSAK 54 (59)
Q Consensus 26 ~FvNGRPLP~~~R~kIveLA~~GvRps~~ 54 (59)
.|- .+|+|++.-.+|++.|.. -||+.
T Consensus 18 ~f~-~~~v~~e~l~~il~aa~~--APs~~ 43 (189)
T 3pxv_A 18 DFK-NEMPSDELLQAIAEAAIQ--APSGM 43 (189)
T ss_dssp CBC-SCCCCHHHHHHHHHHHTT--CCCGG
T ss_pred cCC-CCCCCHHHHHHHHHHHHh--CCCCC
Confidence 465 689999999999999975 35554
No 76
>3ek3_A Nitroreductase; YP_211706.1, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: FMN MPD; 1.70A {Bacteroides fragilis nctc 9343}
Probab=25.90 E-value=55 Score=19.59 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=18.0
Q ss_pred cccCCCCCChHHHHHHHHHHHc
Q psy10746 26 VFVNGRPLPDVVRQRIVELAHN 47 (59)
Q Consensus 26 ~FvNGRPLP~~~R~kIveLA~~ 47 (59)
.|- .+|+|++.-.+|++.|..
T Consensus 19 ~f~-~~~v~~e~l~~il~aa~~ 39 (190)
T 3ek3_A 19 AYD-RKQIPADDLNAILEAGAY 39 (190)
T ss_dssp CBC-SCCCCHHHHHHHHHHHHT
T ss_pred cCC-CCCCCHHHHHHHHHHHHh
Confidence 464 589999999999999974
No 77
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=25.55 E-value=47 Score=21.45 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=18.2
Q ss_pred cCCCCCChHHHHHHHHHHHc-CC
Q psy10746 28 VNGRPLPDVVRQRIVELAHN-GG 49 (59)
Q Consensus 28 vNGRPLP~~~R~kIveLA~~-Gv 49 (59)
+-|..+|.+.+++|+++|++ |+
T Consensus 192 ptG~~~~~~~~~~l~~~a~~~~~ 214 (417)
T 3g7q_A 192 PTGNVITDEELMKLDRLANQHNI 214 (417)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTC
T ss_pred CCCCccCHHHHHHHHHHHHHcCC
Confidence 45889999999999999963 54
No 78
>3of4_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; HET: FMN UNL FAD; 1.90A {Idiomarina loihiensis} SCOP: d.90.1.0
Probab=25.40 E-value=65 Score=19.99 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=21.2
Q ss_pred cccCCCCCChHHHHHHHHHHHcCCCCCcc
Q psy10746 26 VFVNGRPLPDVVRQRIVELAHNGGLLSAK 54 (59)
Q Consensus 26 ~FvNGRPLP~~~R~kIveLA~~GvRps~~ 54 (59)
.|- .+|+|+++-.+|++.|.. -||+.
T Consensus 16 ~f~-~~~v~~e~l~~il~~a~~--aPs~~ 41 (209)
T 3of4_A 16 DFS-GAHITDDVLDKLLNTTRL--TASSY 41 (209)
T ss_dssp SBC-SCCCCHHHHHHHHHHHHT--CCCGG
T ss_pred hcC-CCCCCHHHHHHHHHHHHH--CcCcC
Confidence 465 899999999999999986 36654
No 79
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=25.26 E-value=5.9 Score=24.43 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=20.4
Q ss_pred ccccCC--CCCChHHHHHHHHHHHcCCCCCcc
Q psy10746 25 GVFVNG--RPLPDVVRQRIVELAHNGGLLSAK 54 (59)
Q Consensus 25 G~FvNG--RPLP~~~R~kIveLA~~GvRps~~ 54 (59)
.++-+| ++||...+ +|..|++|-+-
T Consensus 50 rVr~~G~~~~~pr~~t-----vae~gl~P~e~ 76 (83)
T 2inc_C 50 RVRRHEDGTLFPRGMI-----VSDAGLRPTET 76 (83)
T ss_dssp EEEETTTCCEECTTCB-----GGGSCCCTTCE
T ss_pred EEEecCCccCCCCCCE-----eeccCCCCceE
Confidence 467788 99998877 79999999653
No 80
>3e10_A Putative NADH oxidase; NP_348178.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE FMN EPE; 1.40A {Clostridium acetobutylicum}
Probab=24.87 E-value=66 Score=18.96 Aligned_cols=21 Identities=10% Similarity=0.251 Sum_probs=18.0
Q ss_pred cccCCCCCChHHHHHHHHHHHc
Q psy10746 26 VFVNGRPLPDVVRQRIVELAHN 47 (59)
Q Consensus 26 ~FvNGRPLP~~~R~kIveLA~~ 47 (59)
.|- ++|+|++.-.+|++.|..
T Consensus 13 ~f~-~~~v~~e~l~~il~aa~~ 33 (168)
T 3e10_A 13 NYK-GKKVEKEKIEKLLRAAMQ 33 (168)
T ss_dssp CBC-SSCCCHHHHHHHHHHHHT
T ss_pred cCC-CCCCCHHHHHHHHHHHHh
Confidence 465 599999999999999975
No 81
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=24.43 E-value=16 Score=22.70 Aligned_cols=12 Identities=42% Similarity=0.755 Sum_probs=10.1
Q ss_pred ccccccCCCCCC
Q psy10746 23 LGGVFVNGRPLP 34 (59)
Q Consensus 23 LGG~FvNGRPLP 34 (59)
.-|.||||+++.
T Consensus 107 ~NGT~VNg~~i~ 118 (143)
T 2kb3_A 107 LNGTYVNREPRN 118 (143)
T ss_dssp SSCCEETTEECS
T ss_pred cCCeEECCEEcc
Confidence 468999999886
No 82
>3pg6_A E3 ubiquitin-protein ligase DTX3L; DNA-damage, metal-binding, nucleus, phosphorylation, chromatin regulator, UBL conjugation pathway, zinc-finger; HET: CIT; 1.70A {Homo sapiens}
Probab=24.25 E-value=83 Score=21.21 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=28.9
Q ss_pred cceecccccccCCCCCChHHHHHHHHHHHcCCC
Q psy10746 18 GGVNQLGGVFVNGRPLPDVVRQRIVELAHNGGL 50 (59)
Q Consensus 18 ~~vNQLGG~FvNGRPLP~~~R~kIveLA~~GvR 50 (59)
-..+.-||.--.|-|=|..+.+=.-|||++||.
T Consensus 127 HKT~~~GG~~~~GYPDp~YL~rV~~EL~akGI~ 159 (159)
T 3pg6_A 127 HKTSRFGGPEMYGYPDPSYLKRVKEELKAKGIE 159 (159)
T ss_dssp CCCCSSSCGGGTCSCCTTHHHHHHHHHHHTTCC
T ss_pred ccCCCCCCCCcCCCCCcHHHHHHHHHHHHhCCC
Confidence 345677888899999999999999999999984
No 83
>1xn8_A Hypothetical protein YQBG; alpha, GFT structural genomics, protein structure initiative, PSI, NESG, SR215; NMR {Bacillus subtilis} SCOP: a.229.1.1 PDB: 1zts_A
Probab=24.09 E-value=50 Score=21.66 Aligned_cols=17 Identities=35% Similarity=0.675 Sum_probs=15.1
Q ss_pred CCCChHHHHHHHHHHHc
Q psy10746 31 RPLPDVVRQRIVELAHN 47 (59)
Q Consensus 31 RPLP~~~R~kIveLA~~ 47 (59)
-|+|+.+|.-..+||+-
T Consensus 51 ~~iPE~VklA~ckLAqy 67 (131)
T 1xn8_A 51 IPLPETVRLALLKLSQF 67 (131)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 47999999999999974
No 84
>1puc_A P13SUC1, P13; cell cycle, domain swapping, strand-exchanged dimer, binding protein; HET: CPS; 1.95A {Schizosaccharomyces pombe} SCOP: d.97.1.1 PDB: 1sce_A
Probab=23.83 E-value=37 Score=21.59 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=21.2
Q ss_pred CCCCChHHHHHHHHHHHcCCCCCcccc
Q psy10746 30 GRPLPDVVRQRIVELAHNGGLLSAKYS 56 (59)
Q Consensus 30 GRPLP~~~R~kIveLA~~GvRps~~~~ 56 (59)
.|+|.++.|.++-+ ....|-=|.||+
T Consensus 6 ~~~l~~~~r~~~~~-~~~~I~YS~kY~ 31 (105)
T 1puc_A 6 PRLLTASERERLEP-FIDQIHYSPRYA 31 (105)
T ss_dssp CCCCCHHHHHTTHH-HHTTCEECCCEE
T ss_pred CccccHHHHHHHHh-cccCceeCCccc
Confidence 58999999999955 466788888875
No 85
>1ywq_A Nitroreductase family protein; FMN, structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: FMN; 2.30A {Bacillus cereus atcc 14579} SCOP: d.90.1.1
Probab=23.73 E-value=59 Score=19.20 Aligned_cols=21 Identities=5% Similarity=0.067 Sum_probs=17.6
Q ss_pred cccCCCCCChHHHHHHHHHHH
Q psy10746 26 VFVNGRPLPDVVRQRIVELAH 46 (59)
Q Consensus 26 ~FvNGRPLP~~~R~kIveLA~ 46 (59)
.|-..+|+|++.-.+|++.|.
T Consensus 20 ~f~~~~~v~~e~l~~il~aa~ 40 (200)
T 1ywq_A 20 KVTKNDAITKERIEEVLKTAL 40 (200)
T ss_dssp CEECCTTSCHHHHHHHHHHHT
T ss_pred hhCCCCCCCHHHHHHHHHHHH
Confidence 465556999999999999996
No 86
>2noc_A Putative periplasmic protein; GFT STR106, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella choleraesuis} SCOP: d.230.6.1
Probab=23.25 E-value=77 Score=19.24 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=27.5
Q ss_pred ceecccccccCCCCCChHHHHHHHHHHH-cCC
Q psy10746 19 GVNQLGGVFVNGRPLPDVVRQRIVELAH-NGG 49 (59)
Q Consensus 19 ~vNQLGG~FvNGRPLP~~~R~kIveLA~-~Gv 49 (59)
.+..+|-+-++|+-=|++.+++|-+.|. .|.
T Consensus 36 ~lq~iGtISvsg~~s~~da~~~La~kAd~~GA 67 (99)
T 2noc_A 36 EYTKIGTISTTGEMSPLDAREDLIKKADEKGA 67 (99)
T ss_dssp GEEEEEEEECCSCCCHHHHHHHHHHHHHHTCC
T ss_pred ccceeeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 7788999999999999999999999994 465
No 87
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=23.24 E-value=65 Score=20.51 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=17.3
Q ss_pred cCCCCCChHHHHHHHHHHHc
Q psy10746 28 VNGRPLPDVVRQRIVELAHN 47 (59)
Q Consensus 28 vNGRPLP~~~R~kIveLA~~ 47 (59)
.-|..+|.+.+++|+++|++
T Consensus 166 ptG~~~~~~~l~~i~~la~~ 185 (375)
T 3op7_A 166 PTGAVMDRTYLEELVEIASE 185 (375)
T ss_dssp TTCCCCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 45888999999999999964
No 88
>2ifa_A Hypothetical protein SMU.260; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: FMN; 2.30A {Streptococcus mutans} SCOP: d.90.1.1
Probab=23.08 E-value=59 Score=19.52 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=17.2
Q ss_pred cccCCCCCChHHHHHHHHHH
Q psy10746 26 VFVNGRPLPDVVRQRIVELA 45 (59)
Q Consensus 26 ~FvNGRPLP~~~R~kIveLA 45 (59)
.|-..+|+|+++-.+|++.|
T Consensus 16 ~f~~~~~v~~e~l~~il~aa 35 (208)
T 2ifa_A 16 ALGKTVDLSKAELVALIQNA 35 (208)
T ss_dssp CEESCCSSCHHHHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHH
Confidence 46665699999999999999
No 89
>3n2s_A NADPH-dependent nitro/flavin reductase; alpga-beta-alpha sandwich, oxidoreductase; HET: FMN; 1.95A {Bacillus subtilis} SCOP: d.90.1.0
Probab=23.03 E-value=66 Score=20.89 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=20.4
Q ss_pred cccCCCCCChHHHHHHHHHHHcCCCCCcc
Q psy10746 26 VFVNGRPLPDVVRQRIVELAHNGGLLSAK 54 (59)
Q Consensus 26 ~FvNGRPLP~~~R~kIveLA~~GvRps~~ 54 (59)
.|- ++|+|+++-.+|++.|..- ||..
T Consensus 16 ~F~-~~~V~~e~L~~il~aA~~A--PS~~ 41 (249)
T 3n2s_A 16 SFT-DQLLTAEEIDTLVKSAQAA--STSS 41 (249)
T ss_dssp CBC-SCCCCHHHHHHHHHHHHTS--CCGG
T ss_pred cCC-CCCCCHHHHHHHHHHHHhC--CCCC
Confidence 465 5899999999999999752 5543
No 90
>3kwk_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structur genomics, joint center for structural genomics, JCSG; HET: MSE FMN; 1.54A {Bacteroides thetaiotaomicron vpi-5482}
Probab=22.97 E-value=72 Score=19.14 Aligned_cols=26 Identities=8% Similarity=0.116 Sum_probs=20.5
Q ss_pred cccCCCCCChHHHHHHHHHHHcCCCCCcc
Q psy10746 26 VFVNGRPLPDVVRQRIVELAHNGGLLSAK 54 (59)
Q Consensus 26 ~FvNGRPLP~~~R~kIveLA~~GvRps~~ 54 (59)
.|- ++|+|++.-.+|++.|.. -||+.
T Consensus 24 ~f~-~~~v~~e~l~~il~aa~~--APs~~ 49 (175)
T 3kwk_A 24 TYL-NKGVEKEKIDLMLRAGMS--APSGK 49 (175)
T ss_dssp CBC-SCCCCHHHHHHHHHHHTT--SCCGG
T ss_pred CCC-CCCCCHHHHHHHHHHHHH--CcCcc
Confidence 465 699999999999999974 35543
No 91
>3h4o_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.50A {Clostridium difficile 630} PDB: 3koq_A*
Probab=22.19 E-value=71 Score=19.76 Aligned_cols=26 Identities=8% Similarity=0.170 Sum_probs=20.5
Q ss_pred ccccCCCCCChHHHHHHHHHHHcCCCCCc
Q psy10746 25 GVFVNGRPLPDVVRQRIVELAHNGGLLSA 53 (59)
Q Consensus 25 G~FvNGRPLP~~~R~kIveLA~~GvRps~ 53 (59)
..|- ++|+|++.-.+|++.|.. -||.
T Consensus 33 R~f~-~~~v~~e~l~~il~aa~~--APS~ 58 (191)
T 3h4o_A 33 RNYQ-DRKVEKEKLEKVLDVARI--APTG 58 (191)
T ss_dssp CCBC-SCCCCHHHHHHHHHHHHH--SCCG
T ss_pred cccC-CCCCCHHHHHHHHHHHHh--CcCc
Confidence 3464 699999999999999975 3554
No 92
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=22.16 E-value=58 Score=21.42 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=17.7
Q ss_pred CCCCCChHHHHHHHHHHH-cCC
Q psy10746 29 NGRPLPDVVRQRIVELAH-NGG 49 (59)
Q Consensus 29 NGRPLP~~~R~kIveLA~-~Gv 49 (59)
-|..+|.+.+++|+++|+ +|+
T Consensus 219 tG~~~~~~~l~~i~~~a~~~~~ 240 (444)
T 3if2_A 219 TGNVLTDEEMAHLAEIAKRYDI 240 (444)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTC
T ss_pred CCCcCCHHHHHHHHHHHHHCCC
Confidence 588899999999999985 454
No 93
>1nla_A Transcriptional repressor ARC; 3(10) helix, beta-ribbon, beta-sheet, structural switching; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=22.07 E-value=53 Score=18.60 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=13.6
Q ss_pred CChHHHHHHHHHHHc
Q psy10746 33 LPDVVRQRIVELAHN 47 (59)
Q Consensus 33 LP~~~R~kIveLA~~ 47 (59)
||++++.+|-+.|..
T Consensus 14 lp~eLh~~l~~~A~~ 28 (64)
T 1nla_A 14 WPREVLDLVRKVAEE 28 (64)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999964
No 94
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=21.83 E-value=14 Score=23.21 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=10.4
Q ss_pred ccccccCCCCCCh
Q psy10746 23 LGGVFVNGRPLPD 35 (59)
Q Consensus 23 LGG~FvNGRPLP~ 35 (59)
..|.||||++|..
T Consensus 106 ~NGT~vNg~~i~~ 118 (164)
T 1g3g_A 106 TNGTWLNGQKVEK 118 (164)
T ss_dssp SSCEEETTEEECT
T ss_pred CCCeEECCEEcCC
Confidence 4689999998873
No 95
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=21.37 E-value=61 Score=21.47 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=16.4
Q ss_pred CCCCChHHHHHHHHHHHc
Q psy10746 30 GRPLPDVVRQRIVELAHN 47 (59)
Q Consensus 30 GRPLP~~~R~kIveLA~~ 47 (59)
|..+|.+.+++|+++|++
T Consensus 205 G~~~~~~~l~~l~~~a~~ 222 (425)
T 2r2n_A 205 GNSLTSERKKEIYELARK 222 (425)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHH
Confidence 888999999999999964
No 96
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=21.28 E-value=47 Score=18.95 Aligned_cols=15 Identities=27% Similarity=0.138 Sum_probs=11.2
Q ss_pred CCCCChHHHHHHHHHH
Q psy10746 30 GRPLPDVVRQRIVELA 45 (59)
Q Consensus 30 GRPLP~~~R~kIveLA 45 (59)
||| +..+|++|++-|
T Consensus 2 ~R~-~~~~r~~Il~aA 16 (195)
T 2dg7_A 2 ARW-DPGAEQRLKRAA 16 (195)
T ss_dssp CSS-CTTHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHH
Confidence 566 567899999854
No 97
>3qdl_A Oxygen-insensitive NADPH nitroreductase; oxidoreductase; HET: FMN; 2.00A {Helicobacter pylori}
Probab=21.27 E-value=88 Score=19.17 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=20.3
Q ss_pred cccCCCCCChHHHHHHHHHHHcCCCCCcc
Q psy10746 26 VFVNGRPLPDVVRQRIVELAHNGGLLSAK 54 (59)
Q Consensus 26 ~FvNGRPLP~~~R~kIveLA~~GvRps~~ 54 (59)
.|-+..|+|+++-.+|+|.|.. -||..
T Consensus 21 ~f~~~~~V~~e~l~~ileaa~~--APS~~ 47 (210)
T 3qdl_A 21 MFDSHYEFSSTELEEIAEIARL--SPSSY 47 (210)
T ss_dssp CBCTTCCCCHHHHHHHHHHHHT--CCCGG
T ss_pred hcCCCCCCCHHHHHHHHHHHHh--CcCcC
Confidence 4655556999999999999975 35543
No 98
>1z54_A Probable thioesterase; hypothetical protein, structural genom NPPSFA, riken structural genomics/proteomics initiative; 2.10A {Thermus thermophilus} SCOP: d.38.1.1
Probab=21.26 E-value=65 Score=17.43 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=12.2
Q ss_pred CCCC--CChHHHHHHHHHH
Q psy10746 29 NGRP--LPDVVRQRIVELA 45 (59)
Q Consensus 29 NGRP--LP~~~R~kIveLA 45 (59)
+||| +|+++|..+-++.
T Consensus 112 ~~r~~~ip~~~~~~~~~~~ 130 (132)
T 1z54_A 112 GERAARIPEDIYRALSVLH 130 (132)
T ss_dssp SSSBCCCCHHHHHHHHHHS
T ss_pred CCcEecCCHHHHHHHHHhc
Confidence 3565 7899999886653
No 99
>3gr3_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: MSE FMN UNL; 1.45A {Bartonella henselae str}
Probab=21.18 E-value=67 Score=19.95 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=20.0
Q ss_pred cccCCCCCChHHHHHHHHHHHcCCCCCcc
Q psy10746 26 VFVNGRPLPDVVRQRIVELAHNGGLLSAK 54 (59)
Q Consensus 26 ~FvNGRPLP~~~R~kIveLA~~GvRps~~ 54 (59)
.|- .+|+|+++=.+|++.|.. -||+.
T Consensus 21 ~f~-~~pV~~e~l~~il~aA~~--APS~~ 46 (230)
T 3gr3_A 21 AFT-DQPVTQETIREILKLAAR--APSGT 46 (230)
T ss_dssp CBC-SCCCCHHHHHHHHHHHTT--SCCGG
T ss_pred ccC-CCCCCHHHHHHHHHHHHh--CcCcC
Confidence 465 589999999999999963 35543
No 100
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=21.11 E-value=27 Score=22.36 Aligned_cols=13 Identities=38% Similarity=0.810 Sum_probs=10.7
Q ss_pred cccccccCCCCCC
Q psy10746 22 QLGGVFVNGRPLP 34 (59)
Q Consensus 22 QLGG~FvNGRPLP 34 (59)
-.-|.||||+++.
T Consensus 115 S~NGT~VNg~~i~ 127 (162)
T 2kfu_A 115 SLNGTYVNREPVD 127 (162)
T ss_dssp CSSCEEETTBCCS
T ss_pred CCCCeEECCEEcc
Confidence 3468999999986
No 101
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=21.11 E-value=20 Score=24.36 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=10.6
Q ss_pred ccccccCCCCCCh
Q psy10746 23 LGGVFVNGRPLPD 35 (59)
Q Consensus 23 LGG~FvNGRPLP~ 35 (59)
--|.||||++|+.
T Consensus 163 tNGTfVNG~rI~~ 175 (205)
T 3elv_A 163 SNGTCLNNVVIPG 175 (205)
T ss_dssp SSCCEETTEECCB
T ss_pred CCCCeECCEECCC
Confidence 3589999999873
No 102
>3gfa_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN GOL; 1.35A {Clostridium difficile 630}
Probab=21.05 E-value=78 Score=18.80 Aligned_cols=26 Identities=19% Similarity=0.288 Sum_probs=19.9
Q ss_pred cccCCCCCChHHHHHHHHHHHcCCCCCcc
Q psy10746 26 VFVNGRPLPDVVRQRIVELAHNGGLLSAK 54 (59)
Q Consensus 26 ~FvNGRPLP~~~R~kIveLA~~GvRps~~ 54 (59)
.|- ++|+|+++-.+|++.|.. -||+.
T Consensus 15 ~f~-~~~v~~e~l~~il~aa~~--APS~~ 40 (198)
T 3gfa_A 15 KYK-NQSISHETIEKIIEAGIN--APSSK 40 (198)
T ss_dssp CBC-SCCCCHHHHHHHHHHHHT--SCCGG
T ss_pred cCC-CCCCCHHHHHHHHHHHHh--CCCCC
Confidence 465 589999999999999963 35543
No 103
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=20.85 E-value=63 Score=20.24 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=17.4
Q ss_pred CCCCChHHHHHHHHHHH-cCC
Q psy10746 30 GRPLPDVVRQRIVELAH-NGG 49 (59)
Q Consensus 30 GRPLP~~~R~kIveLA~-~Gv 49 (59)
|..+|.+.+.+|+++|+ +|+
T Consensus 147 G~~~~~~~l~~i~~~a~~~~~ 167 (347)
T 1jg8_A 147 GRVVPLENIKEICTIAKEHGI 167 (347)
T ss_dssp SBCCCHHHHHHHHHHHHHHTC
T ss_pred CccCcHHHHHHHHHHHHHCCC
Confidence 99999999999999987 454
No 104
>3eo8_A BLUB-like flavoprotein; YP_001089088.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.74A {Clostridium difficile 630}
Probab=20.75 E-value=86 Score=18.93 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=20.7
Q ss_pred cccCCCCCChHHHHHHHHHHHcCCCCCcc
Q psy10746 26 VFVNGRPLPDVVRQRIVELAHNGGLLSAK 54 (59)
Q Consensus 26 ~FvNGRPLP~~~R~kIveLA~~GvRps~~ 54 (59)
.|- .+|+|+++-.+|++.|.. -||+.
T Consensus 16 ~f~-~~~v~~e~l~~il~aa~~--APS~~ 41 (219)
T 3eo8_A 16 KFK-NQDVSDEDILKMIKAAGA--APSGK 41 (219)
T ss_dssp CBC-SCCCCHHHHHHHHHHHHT--SCCGG
T ss_pred ccC-CCCCCHHHHHHHHHHHHh--CCCCC
Confidence 365 689999999999999985 36654
No 105
>3e39_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN PGE; 1.70A {Desulfovibrio desulfuricans subsp}
Probab=20.51 E-value=89 Score=18.63 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=20.5
Q ss_pred ccccCCCCCChHHHHHHHHHHHcCCCCCc
Q psy10746 25 GVFVNGRPLPDVVRQRIVELAHNGGLLSA 53 (59)
Q Consensus 25 G~FvNGRPLP~~~R~kIveLA~~GvRps~ 53 (59)
..|- ++|+|++.-.+|++.|.. -||+
T Consensus 19 R~f~-~~~v~~e~l~~il~aa~~--aPs~ 44 (178)
T 3e39_A 19 RRYT-DEAVSDEAVRLILEAGIW--APSG 44 (178)
T ss_dssp CCBC-SCCCCHHHHHHHHHHHHT--SCCG
T ss_pred hcCC-CCCCCHHHHHHHHHHHHh--CCCC
Confidence 3465 699999999999999975 3554
No 106
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=20.02 E-value=83 Score=16.57 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.2
Q ss_pred CChHHHHHHHHHHHcCCC
Q psy10746 33 LPDVVRQRIVELAHNGGL 50 (59)
Q Consensus 33 LP~~~R~kIveLA~~GvR 50 (59)
||+++..+|-++|..--|
T Consensus 14 lp~eL~~~l~~~A~~~gr 31 (53)
T 1baz_A 14 WPREVLDLVRKVAEENGR 31 (53)
T ss_dssp CCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 999999999999975443
Done!