RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10746
         (59 letters)



>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila
          melanogaster) [TaxId: 7227]}
          Length = 123

 Score = 61.1 bits (148), Expect = 7e-15
 Identities = 21/32 (65%), Positives = 27/32 (84%)

Query: 17 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHNG 48
           G VNQLGGVF+NGRPLP+ +R +IVE+A +G
Sbjct: 1  QGRVNQLGGVFINGRPLPNNIRLKIVEMAADG 32


>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 63

 Score = 58.1 bits (141), Expect = 2e-14
 Identities = 29/30 (96%), Positives = 29/30 (96%)

Query: 19 GVNQLGGVFVNGRPLPDVVRQRIVELAHNG 48
          GVNQLGGVFVNGRPLPDVVRQRIVELAH G
Sbjct: 1  GVNQLGGVFVNGRPLPDVVRQRIVELAHQG 30


>d1wyka_ b.47.1.3 (A:) Viral capsid protein {Sindbis virus [TaxId:
           11034]}
          Length = 152

 Score = 22.2 bits (47), Expect = 4.5
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 10/43 (23%)

Query: 3   KYTNVTSKNIIKWSHGGVNQLGGVFV----------NGRPLPD 35
            YT+   +    W HG V   GG F           +GRP+ D
Sbjct: 67  TYTSEHPEGFYNWHHGAVQYSGGRFTIPRGVGGRGDSGRPIMD 109


>d1vcpa_ b.47.1.3 (A:) Viral capsid protein {Semliki forest virus
           [TaxId: 11033]}
          Length = 149

 Score = 22.2 bits (47), Expect = 4.8
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 10/43 (23%)

Query: 3   KYTNVTSKNIIKWSHGGVNQLGGVFV----------NGRPLPD 35
           KYT+   +    W HG V   GG F           +GRP+ D
Sbjct: 65  KYTHEKPEGHYNWHHGAVQYSGGRFTIPTGAGKPGDSGRPIFD 107


>d1ep5a_ b.47.1.3 (A:) Viral capsid protein {Venezuelan equine
           encephalitis virus [TaxId: 11036]}
          Length = 156

 Score = 21.8 bits (46), Expect = 7.0
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 10/43 (23%)

Query: 3   KYTNVTSKNIIKWSHGGVNQLGGVFV----------NGRPLPD 35
           KYT+   +    W HG V    G F           +GRP+ D
Sbjct: 71  KYTHEKPQGYYSWHHGAVQYENGRFTVPKGVGAKGDSGRPILD 113


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0586    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 229,456
Number of extensions: 8283
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 5
Length of query: 59
Length of database: 2,407,596
Length adjustment: 29
Effective length of query: 30
Effective length of database: 2,009,426
Effective search space: 60282780
Effective search space used: 60282780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)