BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10748
(98 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|357631258|gb|EHJ78848.1| hypothetical protein KGM_10301 [Danaus plexippus]
Length = 463
Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 72/91 (79%), Positives = 83/91 (91%)
Query: 4 GFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
+K PKVQKVMVQPINLIFR+LQNRSRVQIWLYENVNLRIEGHI+GFDEYMNIVL+ AE
Sbjct: 2 AYKGPPKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAE 61
Query: 64 EYNIKSKTRKALGTIMLKGDNITLIQNLNPD 94
E ++K+K RK +G IM+KGDNITLIQN+NP+
Sbjct: 62 EVHMKTKNRKQIGRIMMKGDNITLIQNVNPN 92
>gi|156554389|ref|XP_001600882.1| PREDICTED: probable small nuclear ribonucleoprotein E-like
[Nasonia vitripennis]
Length = 94
Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 82/90 (91%)
Query: 4 GFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
+K PKVQKVMVQPINLIFR+LQNRSRV +WL+EN+NLRIEGHI+GFDEYMN+VL+ AE
Sbjct: 2 SYKGPPKVQKVMVQPINLIFRYLQNRSRVSVWLFENINLRIEGHIVGFDEYMNLVLDDAE 61
Query: 64 EYNIKSKTRKALGTIMLKGDNITLIQNLNP 93
EY++KSKTRK LG IMLKGDNITLIQN NP
Sbjct: 62 EYHVKSKTRKPLGRIMLKGDNITLIQNTNP 91
>gi|389612857|dbj|BAM19829.1| small ribonucleoprotein particle protein SmE [Papilio xuthus]
Length = 95
Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 72/91 (79%), Positives = 83/91 (91%)
Query: 4 GFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
+K PKVQKVMVQPINLIFR+LQNRSRVQIWLYENVNLRIEGHI+GFDEYMNIVL+ AE
Sbjct: 2 AYKGPPKVQKVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDDAE 61
Query: 64 EYNIKSKTRKALGTIMLKGDNITLIQNLNPD 94
E ++K+K RK +G IM+KGDNITLIQN+NP+
Sbjct: 62 EVHMKTKNRKQIGRIMMKGDNITLIQNVNPN 92
>gi|340720323|ref|XP_003398590.1| PREDICTED: probable small nuclear ribonucleoprotein E-like
[Bombus terrestris]
gi|350408777|ref|XP_003488510.1| PREDICTED: probable small nuclear ribonucleoprotein E-like
[Bombus impatiens]
Length = 94
Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/90 (78%), Positives = 81/90 (90%)
Query: 4 GFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
+K KVQKVMVQPINLIFR+LQNRSRVQ+WL+EN+NLRIEGHI+GFDEYMN+VL+ AE
Sbjct: 2 SYKGPQKVQKVMVQPINLIFRYLQNRSRVQVWLFENINLRIEGHIVGFDEYMNLVLDDAE 61
Query: 64 EYNIKSKTRKALGTIMLKGDNITLIQNLNP 93
EYN+K+K RK LG IMLKGDNITLIQN NP
Sbjct: 62 EYNLKTKARKPLGRIMLKGDNITLIQNTNP 91
>gi|342905932|gb|AEL79249.1| small nuclear ribonucleoprotein E [Rhodnius prolixus]
gi|342905938|gb|AEL79252.1| small nuclear ribonucleoprotein E [Rhodnius prolixus]
Length = 97
Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 81/90 (90%)
Query: 4 GFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
+K KVQKVMVQPINLIFR+LQNRSRV +WLYEN+NLRIEGHI+GFDEYMN+VL+ AE
Sbjct: 2 SYKGPQKVQKVMVQPINLIFRYLQNRSRVCVWLYENINLRIEGHIVGFDEYMNLVLDDAE 61
Query: 64 EYNIKSKTRKALGTIMLKGDNITLIQNLNP 93
EYNIK+K R+ LG IM+KGDNITLIQN+NP
Sbjct: 62 EYNIKTKNRRPLGRIMMKGDNITLIQNVNP 91
>gi|307213117|gb|EFN88639.1| Probable small nuclear ribonucleoprotein E [Harpegnathos saltator]
Length = 295
Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 71/89 (79%), Positives = 79/89 (88%)
Query: 5 FKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEE 64
+K KVQKVMVQPINLIFR+LQNRSRVQ+WL+ENVNLRIEGHI+GFDEYMN+VL+ AEE
Sbjct: 204 YKGPQKVQKVMVQPINLIFRYLQNRSRVQVWLFENVNLRIEGHIVGFDEYMNLVLDDAEE 263
Query: 65 YNIKSKTRKALGTIMLKGDNITLIQNLNP 93
Y K+K RK LG IMLKGDNITLIQN NP
Sbjct: 264 YYQKTKVRKPLGRIMLKGDNITLIQNTNP 292
>gi|390176608|ref|XP_003736146.1| GA15004 [Drosophila pseudoobscura pseudoobscura]
gi|388858695|gb|EIM52219.1| GA15004 [Drosophila pseudoobscura pseudoobscura]
Length = 94
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 69/92 (75%), Positives = 83/92 (90%)
Query: 4 GFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
FK PKVQKVMVQPINLIFR+LQNRSRVQ+WLYEN++LRIEGHI+GFDEYMN+VL+ AE
Sbjct: 2 SFKSNPKVQKVMVQPINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAE 61
Query: 64 EYNIKSKTRKALGTIMLKGDNITLIQNLNPDE 95
E +K++ RK+LG IMLKGDNITLIQN++P +
Sbjct: 62 EVYVKTRQRKSLGRIMLKGDNITLIQNVSPSK 93
>gi|291235504|ref|XP_002737683.1| PREDICTED: small nuclear ribonucleoprotein polypeptide E-like
[Saccoglossus kowalevskii]
Length = 92
Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 80/88 (90%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQ+RSR+Q+WLYE VN+RIEGHI+GFDEYMN+VL+ AEEY++
Sbjct: 5 GQKVQKVMVQPINLIFRYLQSRSRIQVWLYEQVNMRIEGHIIGFDEYMNLVLDDAEEYHM 64
Query: 68 KSKTRKALGTIMLKGDNITLIQNLNPDE 95
KSKTRK LG +MLKGDNITLIQN+ DE
Sbjct: 65 KSKTRKTLGRVMLKGDNITLIQNVQQDE 92
>gi|380023740|ref|XP_003695670.1| PREDICTED: probable small nuclear ribonucleoprotein E-like [Apis
florea]
Length = 129
Score = 150 bits (380), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 81/90 (90%)
Query: 4 GFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
+K KVQKVMVQPINLIFR+LQNRSRVQ+WL+EN+NLRIEGHI+GFDEYMN+VL+ AE
Sbjct: 37 SYKGPQKVQKVMVQPINLIFRYLQNRSRVQVWLFENINLRIEGHIVGFDEYMNLVLDDAE 96
Query: 64 EYNIKSKTRKALGTIMLKGDNITLIQNLNP 93
EY++K+K RK LG IMLKGDNITLIQN NP
Sbjct: 97 EYHLKTKNRKPLGRIMLKGDNITLIQNTNP 126
>gi|328778046|ref|XP_003249437.1| PREDICTED: probable small nuclear ribonucleoprotein E-like [Apis
mellifera]
Length = 94
Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 81/90 (90%)
Query: 4 GFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
+K KVQKVMVQPINLIFR+LQNRSRVQ+WL+EN+NLRIEGHI+GFDEYMN+VL+ AE
Sbjct: 2 SYKGPQKVQKVMVQPINLIFRYLQNRSRVQVWLFENINLRIEGHIVGFDEYMNLVLDDAE 61
Query: 64 EYNIKSKTRKALGTIMLKGDNITLIQNLNP 93
EY++K+K RK LG IMLKGDNITLIQN NP
Sbjct: 62 EYHLKTKNRKPLGRIMLKGDNITLIQNTNP 91
>gi|114051397|ref|NP_001040370.1| small nuclear ribonucleoprotein E [Bombyx mori]
gi|95102658|gb|ABF51267.1| small nuclear ribonucleoprotein E [Bombyx mori]
Length = 95
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 81/91 (89%)
Query: 4 GFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
+K PKVQKVMVQPINLIFR+LQNRSRVQI LYENVNLRIEGHI+GFDEYMN+VL+ AE
Sbjct: 2 AYKGPPKVQKVMVQPINLIFRYLQNRSRVQIGLYENVNLRIEGHIVGFDEYMNMVLDEAE 61
Query: 64 EYNIKSKTRKALGTIMLKGDNITLIQNLNPD 94
E ++KSK RK +G IM+KGDNITLIQN+NP
Sbjct: 62 EVHMKSKNRKQIGRIMMKGDNITLIQNVNPS 92
>gi|24582631|ref|NP_609162.1| small ribonucleoprotein particle protein SmE [Drosophila
melanogaster]
gi|29428063|sp|Q9VLV5.1|RUXE_DROME RecName: Full=Probable small nuclear ribonucleoprotein E;
Short=snRNP-E; AltName: Full=Sm protein E; Short=Sm-E;
Short=SmE
gi|7297315|gb|AAF52576.1| small ribonucleoprotein particle protein SmE [Drosophila
melanogaster]
gi|28317182|gb|AAO39600.1| GM19936p [Drosophila melanogaster]
gi|220947662|gb|ACL86374.1| CG18591-PA [synthetic construct]
gi|220956962|gb|ACL91024.1| CG18591-PA [synthetic construct]
Length = 94
Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 81/90 (90%)
Query: 4 GFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
FK PKVQKVMVQPINLIFR+LQNRSRVQ+WLYEN++LRIEGHI+GFDEYMN+VL+ AE
Sbjct: 2 SFKGNPKVQKVMVQPINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAE 61
Query: 64 EYNIKSKTRKALGTIMLKGDNITLIQNLNP 93
E +K++ R+ LG IMLKGDNITLIQN++P
Sbjct: 62 EVYVKTRQRRNLGRIMLKGDNITLIQNVSP 91
>gi|170065245|ref|XP_001867860.1| small nuclear ribonucleoprotein E [Culex quinquefasciatus]
gi|167882312|gb|EDS45695.1| small nuclear ribonucleoprotein E [Culex quinquefasciatus]
Length = 91
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 77/87 (88%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSRVQ+WLYEN +LRIEGHI+GFDEYMN+VL+ AEEYNI
Sbjct: 5 GSKVQKVMVQPINLIFRYLQNRSRVQVWLYENTHLRIEGHIVGFDEYMNLVLDEAEEYNI 64
Query: 68 KSKTRKALGTIMLKGDNITLIQNLNPD 94
K + R+ LG IMLKGDNITLIQN+ +
Sbjct: 65 KKQNRRTLGRIMLKGDNITLIQNVQAN 91
>gi|118781504|ref|XP_311506.3| AGAP010440-PA [Anopheles gambiae str. PEST]
gi|116129981|gb|EAA07131.3| AGAP010440-PA [Anopheles gambiae str. PEST]
Length = 90
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/84 (79%), Positives = 77/84 (91%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSRVQ+WLYEN +LRIEGHI+GFDEYMN+VL+ AEE+NI
Sbjct: 5 GSKVQKVMVQPINLIFRYLQNRSRVQVWLYENTHLRIEGHIVGFDEYMNLVLDEAEEFNI 64
Query: 68 KSKTRKALGTIMLKGDNITLIQNL 91
K +TR+ LG IMLKGDNITLIQN+
Sbjct: 65 KKQTRRQLGRIMLKGDNITLIQNV 88
>gi|242008943|ref|XP_002425253.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212509009|gb|EEB12515.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 96
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/90 (73%), Positives = 79/90 (87%)
Query: 4 GFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
+K KVQKVMVQPINLIFR+LQNRSRVQ+W+YEN+ RIEGHI+GFDEYMN+VL+ AE
Sbjct: 2 AYKGPAKVQKVMVQPINLIFRYLQNRSRVQVWIYENITTRIEGHIVGFDEYMNLVLDDAE 61
Query: 64 EYNIKSKTRKALGTIMLKGDNITLIQNLNP 93
E+NIK+K RK LG IM+KGDNITLIQ+L+
Sbjct: 62 EFNIKTKNRKELGRIMMKGDNITLIQSLDS 91
>gi|336455074|ref|NP_001229595.1| small nuclear ribonucleoprotein polypeptide E-like
[Strongylocentrotus purpuratus]
Length = 99
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/82 (81%), Positives = 76/82 (92%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNRSRVQIWLY+ NLRIEGHI+GFDEYMN+VL+ AEEY+ K+
Sbjct: 7 KVQKVMVQPINLIFRYLQNRSRVQIWLYDQSNLRIEGHIIGFDEYMNVVLDDAEEYHKKN 66
Query: 70 KTRKALGTIMLKGDNITLIQNL 91
KTRK LG I+LKGDNITLIQN+
Sbjct: 67 KTRKPLGRILLKGDNITLIQNV 88
>gi|157128750|ref|XP_001661504.1| SM protein G, putative [Aedes aegypti]
gi|108872482|gb|EAT36707.1| AAEL011233-PA [Aedes aegypti]
Length = 91
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/87 (75%), Positives = 76/87 (87%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSRVQ+WLYEN +LRIEGHI+GFDEYMN+VL+ AEEYN
Sbjct: 5 GSKVQKVMVQPINLIFRYLQNRSRVQVWLYENTHLRIEGHIVGFDEYMNLVLDEAEEYNT 64
Query: 68 KSKTRKALGTIMLKGDNITLIQNLNPD 94
K + R+ LG IMLKGDNITLIQN+ +
Sbjct: 65 KKQNRRPLGRIMLKGDNITLIQNVQTN 91
>gi|332376438|gb|AEE63359.1| unknown [Dendroctonus ponderosae]
Length = 97
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 66/88 (75%), Positives = 77/88 (87%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNRSRVQ+WLYENV LRIEGHI+GFDEYMN+VL+ AEE +K+
Sbjct: 7 KVQKVMVQPINLIFRYLQNRSRVQVWLYENVRLRIEGHIVGFDEYMNLVLDDAEELYVKT 66
Query: 70 KTRKALGTIMLKGDNITLIQNLNPDEVK 97
R+ LG IMLKGDNIT+IQ + PD V+
Sbjct: 67 MHRRPLGRIMLKGDNITVIQMVKPDSVE 94
>gi|156378619|ref|XP_001631239.1| predicted protein [Nematostella vectensis]
gi|156218276|gb|EDO39176.1| predicted protein [Nematostella vectensis]
Length = 91
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 77/85 (90%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNRS++QIWLYE VN+RIEGHI+GFDEYMN+VL+ AEE ++K+
Sbjct: 7 KVQKVMVQPINLIFRYLQNRSKIQIWLYEQVNMRIEGHIIGFDEYMNLVLDEAEEVHLKT 66
Query: 70 KTRKALGTIMLKGDNITLIQNLNPD 94
KTRK LG I++KGDNITL+ N +P
Sbjct: 67 KTRKPLGRILIKGDNITLLMNASPS 91
>gi|443693014|gb|ELT94478.1| hypothetical protein CAPTEDRAFT_158302 [Capitella teleta]
gi|443707581|gb|ELU03095.1| hypothetical protein CAPTEDRAFT_101766 [Capitella teleta]
Length = 92
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 76/91 (83%)
Query: 4 GFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
+K KVQKVMVQPINLIFR+LQNRSR+Q+WLYE N+RIEG I+GFDEYMN+VL+ AE
Sbjct: 2 AYKAGGKVQKVMVQPINLIFRYLQNRSRIQVWLYEQCNMRIEGCIIGFDEYMNLVLDEAE 61
Query: 64 EYNIKSKTRKALGTIMLKGDNITLIQNLNPD 94
E NIK+K RK LG I++KGDNITLIQ + D
Sbjct: 62 EVNIKTKNRKNLGRILMKGDNITLIQQVQTD 92
>gi|221119660|ref|XP_002154306.1| PREDICTED: small nuclear ribonucleoprotein E-like [Hydra
magnipapillata]
Length = 87
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/85 (75%), Positives = 78/85 (91%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ KVQKVMVQPINLIFR+LQNR+R+QIWLYE NLRIEGHI+GFDEYMN+VL+ A+E +
Sbjct: 1 MSKKVQKVMVQPINLIFRYLQNRARIQIWLYEQNNLRIEGHIIGFDEYMNLVLDDAQEVH 60
Query: 67 IKSKTRKALGTIMLKGDNITLIQNL 91
+K+KT+K LG I+LKGDNITLIQN+
Sbjct: 61 VKNKTKKQLGRILLKGDNITLIQNV 85
>gi|260788526|ref|XP_002589300.1| hypothetical protein BRAFLDRAFT_268096 [Branchiostoma floridae]
gi|229274477|gb|EEN45311.1| hypothetical protein BRAFLDRAFT_268096 [Branchiostoma floridae]
Length = 90
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/83 (77%), Positives = 76/83 (91%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNRSR+QIWLYE N+RIEGHI+GFDEYMN+VL+ AEE ++K+
Sbjct: 7 KVQKVMVQPINLIFRYLQNRSRIQIWLYEQTNMRIEGHIIGFDEYMNLVLDDAEEIHLKT 66
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
K RK LG I+LKGDNITLIQ++N
Sbjct: 67 KNRKPLGRILLKGDNITLIQSVN 89
>gi|392874340|gb|AFM86002.1| Small nuclear ribonucleoprotein E [Callorhinchus milii]
gi|392875604|gb|AFM86634.1| Small nuclear ribonucleoprotein E [Callorhinchus milii]
gi|392884142|gb|AFM90903.1| Small nuclear ribonucleoprotein E [Callorhinchus milii]
Length = 92
Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 76/85 (89%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
A KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE ++
Sbjct: 7 AQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHM 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
KSK RK LG +MLKGDNITL+Q++
Sbjct: 67 KSKARKPLGRVMLKGDNITLLQSVT 91
>gi|148226114|ref|NP_001085570.1| small nuclear ribonucleoprotein polypeptide E [Xenopus laevis]
gi|49256559|gb|AAH72956.1| MGC82471 protein [Xenopus laevis]
Length = 92
Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 64/84 (76%), Positives = 76/84 (90%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSRVQ+WLYE VN+RIEG I+GFDEYMNIVL+ AEE ++
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRVQVWLYEQVNMRIEGCIIGFDEYMNIVLDDAEEIHL 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNL 91
K+K+RK LG IMLKGDNITL+Q++
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSV 90
>gi|321471723|gb|EFX82695.1| hypothetical protein DAPPUDRAFT_195506 [Daphnia pulex]
Length = 94
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/83 (74%), Positives = 73/83 (87%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
APKVQKVMVQPINLIFR+LQ RSRV IWLYEN+N+ +EGHI+GFDEYMNIVL+ AEE +
Sbjct: 5 APKVQKVMVQPINLIFRYLQTRSRVDIWLYENINMHMEGHIVGFDEYMNIVLDDAEEVYV 64
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K+ RK +G ++LKGDNITLIQN
Sbjct: 65 KTNVRKQIGRVLLKGDNITLIQN 87
>gi|147903209|ref|NP_001090934.1| small nuclear ribonucleoprotein E [Sus scrofa]
gi|166233313|sp|A1XQR9.1|RUXE_PIG RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|117660533|gb|ABK55625.1| SNRPE [Sus scrofa]
gi|117660560|gb|ABK55626.1| NDUFB2 [Sus scrofa]
Length = 92
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 77/85 (90%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
A KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 AQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSVS 91
>gi|387914532|gb|AFK10875.1| Small nuclear ribonucleoprotein E [Callorhinchus milii]
Length = 92
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 76/85 (89%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
A KVQKV+VQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE ++
Sbjct: 7 AQKVQKVLVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHM 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
KSK RK LG +MLKGDNITL+Q++
Sbjct: 67 KSKARKPLGRVMLKGDNITLLQSVT 91
>gi|198417167|ref|XP_002127833.1| PREDICTED: similar to small nuclear ribonucleoprotein E [Ciona
intestinalis]
Length = 96
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/84 (75%), Positives = 72/84 (85%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSRV IW+YE VN+RIEGHI+GFDEYMN+VL+ AEE NI
Sbjct: 5 GQKVQKVMVQPINLIFRYLQNRSRVSIWVYEQVNMRIEGHIVGFDEYMNLVLDDAEEVNI 64
Query: 68 KSKTRKALGTIMLKGDNITLIQNL 91
K RK LG +MLKGDNIT+IQ +
Sbjct: 65 KKNVRKTLGRVMLKGDNITVIQQV 88
>gi|52346208|ref|NP_001005147.1| small nuclear ribonucleoprotein polypeptide E [Xenopus (Silurana)
tropicalis]
gi|50603823|gb|AAH77697.1| MGC89991 protein [Xenopus (Silurana) tropicalis]
gi|89268183|emb|CAJ83657.1| small nuclear ribonucleoprotein polypeptide E [Xenopus (Silurana)
tropicalis]
gi|166796482|gb|AAI59376.1| MGC89991 protein [Xenopus (Silurana) tropicalis]
Length = 92
Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/84 (73%), Positives = 76/84 (90%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE ++
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHL 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNL 91
K+K+RK LG IMLKGDNITL+Q++
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSV 90
>gi|322802255|gb|EFZ22651.1| hypothetical protein SINV_02639 [Solenopsis invicta]
Length = 429
Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats.
Identities = 61/78 (78%), Positives = 70/78 (89%)
Query: 5 FKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEE 64
+K KVQKVMVQPINLIFR+LQNRSRVQ+WL+ENVNLRIEGHI+GFDEYMN+VL+ AEE
Sbjct: 3 YKGPQKVQKVMVQPINLIFRYLQNRSRVQVWLFENVNLRIEGHIVGFDEYMNLVLDDAEE 62
Query: 65 YNIKSKTRKALGTIMLKG 82
Y+ K+K RK LG IMLKG
Sbjct: 63 YHQKTKNRKPLGRIMLKG 80
>gi|301783571|ref|XP_002927201.1| PREDICTED: small nuclear ribonucleoprotein E-like [Ailuropoda
melanoleuca]
Length = 98
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 76/85 (89%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE +
Sbjct: 13 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 72
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 73 KTKSRKQLGRIMLKGDNITLLQSIS 97
>gi|387018116|gb|AFJ51176.1| Small nuclear ribonucleoprotein E [Crotalus adamanteus]
Length = 92
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 76/85 (89%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSVS 91
>gi|281354337|gb|EFB29921.1| hypothetical protein PANDA_016960 [Ailuropoda melanoleuca]
Length = 92
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 76/85 (89%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSIS 91
>gi|4507129|ref|NP_003085.1| small nuclear ribonucleoprotein E [Homo sapiens]
gi|27883844|ref|NP_033253.1| small nuclear ribonucleoprotein E [Mus musculus]
gi|45382605|ref|NP_990581.1| small nuclear ribonucleoprotein E [Gallus gallus]
gi|134085710|ref|NP_001076928.1| small nuclear ribonucleoprotein E [Bos taurus]
gi|388490108|ref|NP_001253704.1| small nuclear ribonucleoprotein E [Macaca mulatta]
gi|403420626|ref|NP_001258166.1| small nuclear ribonucleoprotein polypeptide E [Rattus norvegicus]
gi|114572016|ref|XP_001158544.1| PREDICTED: small nuclear ribonucleoprotein E isoform 3 [Pan
troglodytes]
gi|126306697|ref|XP_001364976.1| PREDICTED: small nuclear ribonucleoprotein E-like [Monodelphis
domestica]
gi|291402573|ref|XP_002717622.1| PREDICTED: small nuclear ribonucleoprotein polypeptide E
[Oryctolagus cuniculus]
gi|297662243|ref|XP_002809621.1| PREDICTED: small nuclear ribonucleoprotein E [Pongo abelii]
gi|327271183|ref|XP_003220367.1| PREDICTED: small nuclear ribonucleoprotein E-like [Anolis
carolinensis]
gi|344277002|ref|XP_003410294.1| PREDICTED: small nuclear ribonucleoprotein E-like [Loxodonta
africana]
gi|348578175|ref|XP_003474859.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia
porcellus]
gi|354487267|ref|XP_003505795.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cricetulus
griseus]
gi|359324001|ref|XP_003640259.1| PREDICTED: small nuclear ribonucleoprotein E-like [Canis lupus
familiaris]
gi|397479845|ref|XP_003811214.1| PREDICTED: small nuclear ribonucleoprotein E-like [Pan paniscus]
gi|397504925|ref|XP_003823029.1| PREDICTED: small nuclear ribonucleoprotein E [Pan paniscus]
gi|402857535|ref|XP_003893308.1| PREDICTED: small nuclear ribonucleoprotein E [Papio anubis]
gi|402858753|ref|XP_003893852.1| PREDICTED: small nuclear ribonucleoprotein E-like [Papio anubis]
gi|403261763|ref|XP_003923280.1| PREDICTED: small nuclear ribonucleoprotein E-like [Saimiri
boliviensis boliviensis]
gi|403294819|ref|XP_003938362.1| PREDICTED: small nuclear ribonucleoprotein E [Saimiri boliviensis
boliviensis]
gi|410986283|ref|XP_003999440.1| PREDICTED: small nuclear ribonucleoprotein E [Felis catus]
gi|426239377|ref|XP_004013598.1| PREDICTED: small nuclear ribonucleoprotein E [Ovis aries]
gi|426333365|ref|XP_004028248.1| PREDICTED: small nuclear ribonucleoprotein E-like [Gorilla
gorilla gorilla]
gi|55977309|sp|P62305.1|RUXE_MOUSE RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|61237380|sp|P62304.1|RUXE_HUMAN RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|78102504|sp|P62303.1|RUXE_CHICK RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|190360254|sp|A4FUI2.1|RUXE_BOVIN RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|225734045|pdb|3CW1|E Chain E, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734054|pdb|3CW1|W Chain W, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734063|pdb|3CW1|X Chain X, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734072|pdb|3CW1|Y Chain Y, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|315583605|pdb|3PGW|E Chain E, Crystal Structure Of Human U1 Snrnp
gi|315583614|pdb|3PGW|H Chain H, Crystal Structure Of Human U1 Snrnp
gi|332639437|pdb|2Y9A|E Chain E, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639444|pdb|2Y9A|L Chain L, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639451|pdb|2Y9A|S Chain S, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639461|pdb|2Y9B|E Chain E, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639468|pdb|2Y9B|L Chain L, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639475|pdb|2Y9B|S Chain S, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639485|pdb|2Y9C|E Chain E, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639492|pdb|2Y9C|L Chain L, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639499|pdb|2Y9C|S Chain S, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639509|pdb|2Y9D|E Chain E, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639516|pdb|2Y9D|L Chain L, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639523|pdb|2Y9D|S Chain S, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|343781212|pdb|3S6N|E Chain E, Crystal Structure Of The Gemin2-Binding Domain Of Smn,
Gemin2 In Complex With Smd1D2FEG FROM HUMAN
gi|444302200|pdb|4F7U|E Chain E, Macromolecular Machine 6
gi|444302201|pdb|4F7U|H Chain H, Macromolecular Machine 6
gi|453055424|pdb|1VU2|C Chain C, The 8s Snrnp Assembly Intermediate
gi|453055432|pdb|1VU2|K Chain K, The 8s Snrnp Assembly Intermediate
gi|453055440|pdb|1VU2|S Chain S, The 8s Snrnp Assembly Intermediate
gi|453055448|pdb|1VU2|AA Chain a, The 8s Snrnp Assembly Intermediate
gi|453055456|pdb|1VU2|II Chain i, The 8s Snrnp Assembly Intermediate
gi|453055464|pdb|1VU2|QQ Chain q, The 8s Snrnp Assembly Intermediate
gi|453055476|pdb|1VU2|YY Chain y, The 8s Snrnp Assembly Intermediate
gi|453055480|pdb|1VU3|C Chain C, The 8s Snrnp Assembly Intermediate
gi|453055488|pdb|1VU3|K Chain K, The 8s Snrnp Assembly Intermediate
gi|453055496|pdb|1VU3|S Chain S, The 8s Snrnp Assembly Intermediate
gi|453055504|pdb|1VU3|AA Chain a, The 8s Snrnp Assembly Intermediate
gi|453055512|pdb|1VU3|II Chain i, The 8s Snrnp Assembly Intermediate
gi|453055520|pdb|1VU3|QQ Chain q, The 8s Snrnp Assembly Intermediate
gi|453056012|pdb|4F77|K Chain K, The 8s Snrnp Assembly Intermediate
gi|453056020|pdb|4F77|C Chain C, The 8s Snrnp Assembly Intermediate
gi|453056028|pdb|4F77|S Chain S, The 8s Snrnp Assembly Intermediate
gi|453056036|pdb|4F77|AA Chain a, The 8s Snrnp Assembly Intermediate
gi|453056044|pdb|4F77|II Chain i, The 8s Snrnp Assembly Intermediate
gi|453056052|pdb|4F77|QQ Chain q, The 8s Snrnp Assembly Intermediate
gi|453056064|pdb|4F77|YY Chain y, The 8s Snrnp Assembly Intermediate
gi|35105|emb|CAA31007.1| unnamed protein product [Homo sapiens]
gi|304425|gb|AAA49073.1| small nuclear ribonucleoprotein E [Gallus gallus]
gi|312002|emb|CAA46624.1| SmE protein [Gallus gallus]
gi|338267|gb|AAA90926.1| small nuclear RNA protein (snRNP E) [Homo sapiens]
gi|12803609|gb|AAH02639.1| Small nuclear ribonucleoprotein polypeptide E [Homo sapiens]
gi|12859681|dbj|BAB31734.1| unnamed protein product [Mus musculus]
gi|14198403|gb|AAH08262.1| Small nuclear ribonucleoprotein E [Mus musculus]
gi|33585911|gb|AAH55765.1| Small nuclear ribonucleoprotein E [Mus musculus]
gi|56078667|gb|AAH51207.1| Small nuclear ribonucleoprotein E [Mus musculus]
gi|60688403|gb|AAH90951.1| Small nuclear ribonucleoprotein polypeptide E [Homo sapiens]
gi|119611900|gb|EAW91494.1| small nuclear ribonucleoprotein polypeptide E, isoform CRA_a
[Homo sapiens]
gi|133777545|gb|AAI14916.1| SNRPE protein [Bos taurus]
gi|149058608|gb|EDM09765.1| rCG46024, isoform CRA_a [Rattus norvegicus]
gi|189053260|dbj|BAG35066.1| unnamed protein product [Homo sapiens]
gi|208967438|dbj|BAG73733.1| small nuclear ribonucleoprotein polypeptide E [synthetic
construct]
gi|296479386|tpg|DAA21501.1| TPA: small nuclear ribonucleoprotein E [Bos taurus]
gi|344246138|gb|EGW02242.1| Small nuclear ribonucleoprotein E [Cricetulus griseus]
gi|355558873|gb|EHH15653.1| hypothetical protein EGK_01772 [Macaca mulatta]
gi|355746009|gb|EHH50634.1| hypothetical protein EGM_01497 [Macaca fascicularis]
gi|387542988|gb|AFJ72121.1| small nuclear ribonucleoprotein E [Macaca mulatta]
gi|410355685|gb|JAA44446.1| small nuclear ribonucleoprotein polypeptide E [Pan troglodytes]
gi|417395589|gb|JAA44847.1| Putative small nuclear ribonucleoprotein e [Desmodus rotundus]
Length = 92
Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 76/85 (89%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSVS 91
>gi|317418569|emb|CBN80607.1| Small nuclear ribonucleoprotein E [Dicentrarchus labrax]
Length = 92
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/83 (74%), Positives = 76/83 (91%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE ++K+
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
K RK LG IMLKGDNITL+Q+++
Sbjct: 69 KNRKPLGRIMLKGDNITLLQSVS 91
>gi|148707696|gb|EDL39643.1| small nuclear ribonucleoprotein E, isoform CRA_a [Mus musculus]
Length = 105
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 76/85 (89%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE +
Sbjct: 20 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 79
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 80 KTKSRKQLGRIMLKGDNITLLQSVS 104
>gi|109484106|ref|XP_001064438.1| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
gi|293349553|ref|XP_002727191.1| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
Length = 92
Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 76/85 (89%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSVS 91
>gi|213514566|ref|NP_001134166.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|209731160|gb|ACI66449.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|209731914|gb|ACI66826.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|221222246|gb|ACM09784.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|223646154|gb|ACN09835.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|223646558|gb|ACN10037.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|223647280|gb|ACN10398.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|223672001|gb|ACN12182.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|223672405|gb|ACN12384.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|223673159|gb|ACN12761.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|225715976|gb|ACO13834.1| Small nuclear ribonucleoprotein E [Esox lucius]
gi|303663497|gb|ADM16108.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|303666767|gb|ADM16243.1| Small nuclear ribonucleoprotein E [Salmo salar]
Length = 92
Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/82 (75%), Positives = 75/82 (91%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE ++K+
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 70 KTRKALGTIMLKGDNITLIQNL 91
K RK LG IMLKGDNITL+Q++
Sbjct: 69 KNRKPLGRIMLKGDNITLLQSV 90
>gi|149408455|ref|XP_001513314.1| PREDICTED: small nuclear ribonucleoprotein E-like
[Ornithorhynchus anatinus]
Length = 92
Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 61/85 (71%), Positives = 76/85 (89%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG +MLKGDNITL+Q+++
Sbjct: 67 KTKSRKQLGRVMLKGDNITLLQSVS 91
>gi|432859400|ref|XP_004069089.1| PREDICTED: small nuclear ribonucleoprotein E-like [Oryzias
latipes]
Length = 92
Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 61/83 (73%), Positives = 76/83 (91%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE ++K+
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
K RK LG +MLKGDNITL+Q+++
Sbjct: 69 KNRKPLGRVMLKGDNITLLQSVS 91
>gi|348510586|ref|XP_003442826.1| PREDICTED: small nuclear ribonucleoprotein E-like [Oreochromis
niloticus]
Length = 92
Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 76/85 (89%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE ++
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHM 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K RK LG IMLKGDNITL+Q+++
Sbjct: 67 KTKNRKPLGRIMLKGDNITLLQSVS 91
>gi|225713140|gb|ACO12416.1| Small nuclear ribonucleoprotein E [Lepeophtheirus salmonis]
gi|290462431|gb|ADD24263.1| Small nuclear ribonucleoprotein E [Lepeophtheirus salmonis]
Length = 104
Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 62/81 (76%), Positives = 71/81 (87%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNR+RV +WLYENVN RIEGHI+GFDEYMN+VL A E ++K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRTRVSVWLYENVNTRIEGHIVGFDEYMNLVLADAAEVHVKR 68
Query: 70 KTRKALGTIMLKGDNITLIQN 90
T K +GTIMLKGDNITLIQ+
Sbjct: 69 GTTKNVGTIMLKGDNITLIQS 89
>gi|297459953|ref|XP_002700818.1| PREDICTED: uncharacterized protein LOC100296197 [Bos taurus]
Length = 182
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/83 (72%), Positives = 76/83 (91%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN++IEG I+GFDEYMN++L+ AEE + K+
Sbjct: 99 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMQIEGCIIGFDEYMNLILDDAEEIHSKT 158
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
K+RK LG IMLKGDNITL+Q+++
Sbjct: 159 KSRKQLGRIMLKGDNITLLQSVS 181
>gi|318820229|ref|NP_001187846.1| small nuclear ribonucleoprotein e [Ictalurus punctatus]
gi|308324130|gb|ADO29200.1| small nuclear ribonucleoprotein e [Ictalurus punctatus]
Length = 92
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/83 (72%), Positives = 76/83 (91%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE +N+RIEG I+GFDEYMN+VL+ AEE ++K+
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQINMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
K RK LG +MLKGDNITL+Q+++
Sbjct: 69 KNRKPLGRVMLKGDNITLLQSVS 91
>gi|47227397|emb|CAF96946.1| unnamed protein product [Tetraodon nigroviridis]
Length = 92
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/85 (71%), Positives = 76/85 (89%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE ++
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHM 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K RK LG +MLKGDNITL+Q+++
Sbjct: 67 KTKNRKPLGRVMLKGDNITLLQSVS 91
>gi|405971206|gb|EKC36056.1| Small nuclear ribonucleoprotein E [Crassostrea gigas]
Length = 90
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 74/88 (84%)
Query: 4 GFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
+K KVQKVMVQPINLIFR+LQNRSR+ +WLYE NLRIEG I+GFDEYMN+VL+ AE
Sbjct: 2 AYKGGQKVQKVMVQPINLIFRYLQNRSRISVWLYEQTNLRIEGCIVGFDEYMNLVLDEAE 61
Query: 64 EYNIKSKTRKALGTIMLKGDNITLIQNL 91
E ++K+K RK LG I+LKGDNITLIQ +
Sbjct: 62 EVHMKTKNRKTLGRILLKGDNITLIQQV 89
>gi|308322451|gb|ADO28363.1| small nuclear ribonucleoprotein e [Ictalurus furcatus]
Length = 92
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 76/85 (89%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE +N+RIEG I+GFDEYMN+VL+ AEE ++
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQINMRIEGCIIGFDEYMNLVLDDAEEVHM 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K RK LG +MLKGDNITL+Q+++
Sbjct: 67 KTKNRKPLGRVMLKGDNITLLQSVS 91
>gi|55632867|ref|XP_520443.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Pan troglodytes]
Length = 92
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/85 (71%), Positives = 76/85 (89%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN++IEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSVS 91
>gi|109514130|ref|XP_001065908.1| PREDICTED: small nuclear ribonucleoprotein E [Rattus norvegicus]
Length = 92
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/85 (71%), Positives = 76/85 (89%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RI+G I+GFDEYMN+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNIRIKGCIIGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSVS 91
>gi|170579069|ref|XP_001894662.1| small nuclear ribonucleoprotein E [Brugia malayi]
gi|158598633|gb|EDP36493.1| small nuclear ribonucleoprotein E, putative [Brugia malayi]
gi|402592161|gb|EJW86090.1| small nuclear ribonucleoprotein E [Wuchereria bancrofti]
Length = 89
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/84 (72%), Positives = 75/84 (89%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQKVMVQPINLIFR+LQNRSR+QIWLYE++ RIEG+I+GFDEYMN+VL+ AEE N+
Sbjct: 5 SGKVQKVMVQPINLIFRYLQNRSRIQIWLYEDITHRIEGYIIGFDEYMNVVLDEAEEVNM 64
Query: 68 KSKTRKALGTIMLKGDNITLIQNL 91
K+K R +G IMLKGDNITLIQ++
Sbjct: 65 KTKNRNKVGRIMLKGDNITLIQSI 88
>gi|147904965|ref|NP_001085500.1| MGC80249 protein [Xenopus laevis]
gi|49119142|gb|AAH72854.1| MGC80249 protein [Xenopus laevis]
Length = 93
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 76/84 (90%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ +EE ++
Sbjct: 8 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDSEEIHL 67
Query: 68 KSKTRKALGTIMLKGDNITLIQNL 91
K+K+RK +G IMLKGDNITL+Q++
Sbjct: 68 KTKSRKPIGRIMLKGDNITLLQSV 91
>gi|293356012|ref|XP_002728814.1| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
gi|392337758|ref|XP_003753347.1| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
Length = 92
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/85 (71%), Positives = 76/85 (89%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN++IEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSVS 91
>gi|225717902|gb|ACO14797.1| Probable small nuclear ribonucleoprotein E [Caligus clemensi]
Length = 94
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/84 (73%), Positives = 72/84 (85%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNR+RV +WLYENVN +IEGHI+GFDEYMN+VL A E ++K
Sbjct: 9 KVQKVMVQPINLIFRYLQNRTRVSVWLYENVNTKIEGHIVGFDEYMNLVLADAAEVHLKK 68
Query: 70 KTRKALGTIMLKGDNITLIQNLNP 93
T K +GTIMLKGDNITLIQ+ P
Sbjct: 69 GTTKNVGTIMLKGDNITLIQSKEP 92
>gi|383413025|gb|AFH29726.1| small nuclear ribonucleoprotein E [Macaca mulatta]
Length = 92
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/85 (71%), Positives = 76/85 (89%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKV+VQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 GQKVQKVVVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSVS 91
>gi|395734016|ref|XP_003776336.1| PREDICTED: small nuclear ribonucleoprotein E-like [Pongo abelii]
Length = 92
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/85 (71%), Positives = 75/85 (88%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIVGFDEYMNLVLDDAEEVHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+++ +
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLRSFS 91
>gi|324518207|gb|ADY47035.1| Small nuclear ribonucleoprotein E [Ascaris suum]
Length = 128
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 75/85 (88%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
A KVQKVMVQPINLIFR+LQNRSR+QIWLYE+V RIEG+I+ FDEYMN+VL+ AEE N+
Sbjct: 44 AGKVQKVMVQPINLIFRYLQNRSRIQIWLYEDVTHRIEGYIIWFDEYMNVVLDEAEEVNL 103
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K R +G I+LKGDNITLIQ++N
Sbjct: 104 KTKNRNKVGRILLKGDNITLIQSVN 128
>gi|384252439|gb|EIE25915.1| small nuclear ribonucleo protein E [Coccomyxa subellipsoidea
C-169]
Length = 87
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 73/84 (86%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
MA KV+++M QPINLIFRFLQ+R +VQIWLYE +LRIEG I+GFDEYMN+VL+ AEE +
Sbjct: 1 MATKVKRIMTQPINLIFRFLQSRQKVQIWLYEQTDLRIEGRIIGFDEYMNLVLDEAEEVS 60
Query: 67 IKSKTRKALGTIMLKGDNITLIQN 90
+K KTRKALG I+LKGDNITL+Q
Sbjct: 61 MKRKTRKALGRILLKGDNITLMQT 84
>gi|410920641|ref|XP_003973792.1| PREDICTED: small nuclear ribonucleoprotein E-like [Takifugu
rubripes]
gi|410920643|ref|XP_003973793.1| PREDICTED: small nuclear ribonucleoprotein E-like [Takifugu
rubripes]
Length = 92
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 76/85 (89%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ +EE ++
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDSEEIHM 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K RK LG +MLKGDNITL+Q+++
Sbjct: 67 KTKNRKPLGRVMLKGDNITLLQSVS 91
>gi|348586080|ref|XP_003478798.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia
porcellus]
Length = 92
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 76/85 (89%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRS++Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSQIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEETHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
++K+RK LG IMLKGDNITL+Q+++
Sbjct: 67 RTKSRKQLGQIMLKGDNITLLQSVS 91
>gi|41055945|ref|NP_957298.1| small nuclear ribonucleoprotein E [Danio rerio]
gi|54039591|sp|Q7ZUG0.1|RUXE_DANRE RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|29124607|gb|AAH49062.1| Small nuclear ribonucleoprotein polypeptide E [Danio rerio]
Length = 92
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/83 (73%), Positives = 75/83 (90%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNRSR+ +WLYE VN+RIEG I+GFDEYMN+VL+ AEE ++K+
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
K RK LG IMLKGDNITL+Q+++
Sbjct: 69 KNRKPLGRIMLKGDNITLLQSVS 91
>gi|209735714|gb|ACI68726.1| Small nuclear ribonucleoprotein E [Salmo salar]
Length = 92
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 74/82 (90%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQN SR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE ++K+
Sbjct: 9 KVQKVMVQPINLIFRYLQNHSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 70 KTRKALGTIMLKGDNITLIQNL 91
K RK LG IMLKGDNITL+Q++
Sbjct: 69 KNRKPLGRIMLKGDNITLLQSV 90
>gi|440911215|gb|ELR60916.1| Small nuclear ribonucleoprotein E, partial [Bos grunniens mutus]
Length = 91
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 76/85 (89%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN++IEG I+GFDEYMN++L+ AEE +
Sbjct: 6 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMQIEGCIIGFDEYMNLILDDAEEIHS 65
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 66 KTKSRKQLGRIMLKGDNITLLQSVS 90
>gi|312078394|ref|XP_003141719.1| small nuclear ribonucleoprotein E [Loa loa]
gi|307763117|gb|EFO22351.1| small nuclear ribonucleoprotein E [Loa loa]
Length = 89
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/84 (72%), Positives = 74/84 (88%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+QIWLYE++ RIEG+I+GFDEYMN+VL+ AEE N+
Sbjct: 5 GGKVQKVMVQPINLIFRYLQNRSRIQIWLYEDITHRIEGYIIGFDEYMNVVLDEAEEVNM 64
Query: 68 KSKTRKALGTIMLKGDNITLIQNL 91
K+K R +G IMLKGDNITLIQ++
Sbjct: 65 KTKNRNKVGRIMLKGDNITLIQSI 88
>gi|301765636|ref|XP_002918237.1| PREDICTED: small nuclear ribonucleoprotein E-like [Ailuropoda
melanoleuca]
Length = 92
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/85 (71%), Positives = 75/85 (88%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+R EG I+GFDEYMN+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRKEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSVS 91
>gi|296216208|ref|XP_002754465.1| PREDICTED: small nuclear ribonucleoprotein E-like [Callithrix
jacchus]
gi|296238888|ref|XP_002764351.1| PREDICTED: small nuclear ribonucleoprotein E-like [Callithrix
jacchus]
Length = 92
Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 76/86 (88%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN++IEG I+GFDEYMN+VL++AEE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMQIEGCIIGFDEYMNLVLDAAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLNP 93
K+K+RK LG I LKGDNITL+Q+++
Sbjct: 67 KTKSRKQLGRITLKGDNITLLQSVST 92
>gi|346471229|gb|AEO35459.1| hypothetical protein [Amblyomma maculatum]
Length = 94
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 74/87 (85%), Gaps = 2/87 (2%)
Query: 4 GFKMAP--KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLES 61
FK P KVQKVMVQPINLIFR+LQNR+R+Q+WLYENV LRIEGHI+GFDEYMN+VL+
Sbjct: 2 AFKGGPGQKVQKVMVQPINLIFRYLQNRARIQVWLYENVALRIEGHIIGFDEYMNLVLDD 61
Query: 62 AEEYNIKSKTRKALGTIMLKGDNITLI 88
AEE K+K RK +G I+LKG+NITLI
Sbjct: 62 AEEIYTKTKQRKQVGRILLKGENITLI 88
>gi|296230202|ref|XP_002760604.1| PREDICTED: small nuclear ribonucleoprotein E-like [Callithrix
jacchus]
Length = 92
Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/85 (71%), Positives = 75/85 (88%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRS +Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSWIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSVS 91
>gi|348553541|ref|XP_003462585.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia
porcellus]
Length = 93
Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 60/92 (65%), Positives = 78/92 (84%)
Query: 1 MSGGFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLE 60
M+ + KVQKVMVQPINLIFR+LQNRS++Q+WLYE VN+R EG I+GFDEYMN++L+
Sbjct: 1 MTSIWGQGQKVQKVMVQPINLIFRYLQNRSQIQVWLYEQVNMRTEGCIIGFDEYMNLILD 60
Query: 61 SAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
AEE + K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 61 DAEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 92
>gi|355721057|gb|AES07138.1| small nuclear ribonucleoprotein polypeptide E [Mustela putorius
furo]
Length = 82
Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 74/82 (90%)
Query: 11 VQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK 70
VQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE + K+K
Sbjct: 1 VQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTK 60
Query: 71 TRKALGTIMLKGDNITLIQNLN 92
RK LG IMLKGDNITL+Q+++
Sbjct: 61 LRKQLGRIMLKGDNITLLQSVS 82
>gi|74747670|sp|Q5VYJ4.1|RUEL1_HUMAN RecName: Full=Putative small nuclear ribonucleoprotein
polypeptide E-like protein 1
Length = 92
Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 76/85 (89%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRS++Q+WLYE VN++IEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSQIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSVS 91
>gi|297480322|ref|XP_002707759.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC100296197 [Bos taurus]
gi|296482627|tpg|DAA24742.1| TPA: small nuclear ribonucleoprotein polypeptide E-like [Bos
taurus]
Length = 182
Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 59/83 (71%), Positives = 75/83 (90%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMV PINLIFR+LQNRSR+Q+WLYE VN++IEG I+GFDEYMN++L+ AEE + K+
Sbjct: 99 KVQKVMVXPINLIFRYLQNRSRIQVWLYEQVNMQIEGCIIGFDEYMNLILDDAEEIHSKT 158
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
K+RK LG IMLKGDNITL+Q+++
Sbjct: 159 KSRKQLGRIMLKGDNITLLQSVS 181
>gi|426361276|ref|XP_004047844.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Gorilla gorilla gorilla]
Length = 92
Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 61/85 (71%), Positives = 75/85 (88%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VNL+IEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNLQIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDN TL+Q+++
Sbjct: 67 KTKSRKQLGWIMLKGDNSTLLQSVS 91
>gi|440908733|gb|ELR58720.1| hypothetical protein M91_20943, partial [Bos grunniens mutus]
Length = 91
Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 61/85 (71%), Positives = 74/85 (87%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRS +Q+WLYE VN+RIEG I+GFDEY N+VL+ AEE +
Sbjct: 6 GQKVQKVMVQPINLIFRYLQNRSHIQVWLYEQVNMRIEGCIIGFDEYRNLVLDDAEEIHS 65
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITLIQ+++
Sbjct: 66 KTKSRKQLGRIMLKGDNITLIQSVS 90
>gi|332222659|ref|XP_003260491.1| PREDICTED: small nuclear ribonucleoprotein E-like [Nomascus
leucogenys]
Length = 92
Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 76/85 (89%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQK+MVQPINLIFR+LQ+RSR+Q+WLYE VN++IEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 GQKVQKIMVQPINLIFRYLQSRSRIQVWLYEQVNMQIEGCIIGFDEYMNLVLDEAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSVS 91
>gi|297469885|ref|XP_002707307.1| PREDICTED: small nuclear ribonucleoprotein E [Bos taurus]
gi|297492936|ref|XP_002699974.1| PREDICTED: small nuclear ribonucleoprotein E [Bos taurus]
gi|296470897|tpg|DAA13012.1| TPA: small nuclear ribonucleoprotein polypeptide E-like [Bos
taurus]
Length = 164
Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 61/83 (73%), Positives = 74/83 (89%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNRS +Q+WLYE VN+RIEG I+GFDEY N+VL+ AEE + K+
Sbjct: 81 KVQKVMVQPINLIFRYLQNRSHIQVWLYEQVNMRIEGCIIGFDEYRNLVLDDAEEIHSKT 140
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
K+RK LG IMLKGDNITLIQ+++
Sbjct: 141 KSRKQLGRIMLKGDNITLIQSVS 163
>gi|427786001|gb|JAA58452.1| Putative small ribonucleoprotein particle protein sme
[Rhipicephalus pulchellus]
Length = 94
Score = 130 bits (328), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 74/86 (86%), Gaps = 2/86 (2%)
Query: 5 FKMAP--KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESA 62
FK P KVQKVMVQPINLIFR+LQNR+R+Q+WLYENV+LRIEGHI+GFDEYMN+VL+ A
Sbjct: 3 FKGGPGQKVQKVMVQPINLIFRYLQNRARIQVWLYENVHLRIEGHIIGFDEYMNLVLDDA 62
Query: 63 EEYNIKSKTRKALGTIMLKGDNITLI 88
EE K K RK +G I+LKG+NITLI
Sbjct: 63 EEIYTKPKHRKQVGRILLKGENITLI 88
>gi|254281298|ref|NP_001156839.1| small nuclear ribonucleoprotein E [Acyrthosiphon pisum]
Length = 93
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 75/90 (83%)
Query: 5 FKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEE 64
+K+ KVQKVMVQPINLIFR LQNR++VQ+WL E ++LRIEGHI+GFDEYMN+VL+ A E
Sbjct: 2 YKVPQKVQKVMVQPINLIFRHLQNRAKVQVWLQEKIHLRIEGHIVGFDEYMNLVLDEACE 61
Query: 65 YNIKSKTRKALGTIMLKGDNITLIQNLNPD 94
N K +RK +G I+LKG+NITLIQN+ P
Sbjct: 62 VNTKVDSRKPVGRILLKGENITLIQNMTPS 91
>gi|119589572|gb|EAW69166.1| hCG23490, isoform CRA_a [Homo sapiens]
Length = 92
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 75/85 (88%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPI+LIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPISLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKG NITL+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGGNITLLQSVS 91
>gi|348569444|ref|XP_003470508.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia
porcellus]
Length = 92
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 74/85 (87%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQN SR+Q+WLYE VN+ IEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 TQKVQKVMVQPINLIFRYLQNSSRIQVWLYEQVNMHIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 67 KTKSRKQLGWIMLKGDNITLLQSVS 91
>gi|168027770|ref|XP_001766402.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168048491|ref|XP_001776700.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671992|gb|EDQ58536.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682311|gb|EDQ68730.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 87
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 73/84 (86%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
MA KVQ++M QPINLIFRFLQ++SR+QIWL+E +LRIEG I+GFDEYMN+VL+ AEE +
Sbjct: 1 MATKVQRIMTQPINLIFRFLQSKSRIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVS 60
Query: 67 IKSKTRKALGTIMLKGDNITLIQN 90
+K KTRK LG I+LKGDNITL+ N
Sbjct: 61 LKKKTRKPLGRILLKGDNITLMMN 84
>gi|307105606|gb|EFN53854.1| hypothetical protein CHLNCDRAFT_36210 [Chlorella variabilis]
Length = 86
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 73/83 (87%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M PKV+++M QPINLIFRFLQ+R ++QIWLYE+ +LRIEG I+GFDEYMN+VL+ AEE +
Sbjct: 1 MPPKVKRIMTQPINLIFRFLQSRQKIQIWLYEHNDLRIEGRIIGFDEYMNLVLDEAEEVS 60
Query: 67 IKSKTRKALGTIMLKGDNITLIQ 89
+K KTRKALG I+LKGD ITL+Q
Sbjct: 61 VKRKTRKALGRILLKGDTITLMQ 83
>gi|224117550|ref|XP_002331664.1| predicted protein [Populus trichocarpa]
gi|224143797|ref|XP_002325079.1| predicted protein [Populus trichocarpa]
gi|118483404|gb|ABK93602.1| unknown [Populus trichocarpa]
gi|222866513|gb|EEF03644.1| predicted protein [Populus trichocarpa]
gi|222874083|gb|EEF11214.1| predicted protein [Populus trichocarpa]
Length = 88
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 73/83 (87%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ++M QPINLIFRFLQ+++R+QIWL+E +LRIEG I+GFDEYMN+VLE AEE NI
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEVNI 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K K+RK+LG I+LKGDNITL+ N
Sbjct: 63 KKKSRKSLGRILLKGDNITLMMN 85
>gi|397505808|ref|XP_003823438.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Pan paniscus]
Length = 92
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/83 (72%), Positives = 75/83 (90%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN++IEG I+GFDEYMN+VL+ AEE + K+
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEPVNMQIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
K+RK LG IMLKGDNI L+Q+++
Sbjct: 69 KSRKQLGRIMLKGDNINLLQSVS 91
>gi|339247003|ref|XP_003375135.1| small nuclear ribonucleoprotein E [Trichinella spiralis]
gi|316971586|gb|EFV55343.1| small nuclear ribonucleoprotein E [Trichinella spiralis]
Length = 93
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 73/84 (86%)
Query: 9 PKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIK 68
PKVQKVMVQPINL+FRFLQ+ RVQ WLYEN +LRI+G+I+GFDE+MNIVLE AEE ++K
Sbjct: 9 PKVQKVMVQPINLVFRFLQSHCRVQFWLYENTHLRIDGYIVGFDEFMNIVLEEAEEVDLK 68
Query: 69 SKTRKALGTIMLKGDNITLIQNLN 92
SK R+ +G I+LKG+ ITLIQ L+
Sbjct: 69 SKQRRQIGRILLKGECITLIQALH 92
>gi|241838714|ref|XP_002415212.1| small nuclear ribonucleoprotein E, putative [Ixodes scapularis]
gi|215509424|gb|EEC18877.1| small nuclear ribonucleoprotein E, putative [Ixodes scapularis]
Length = 94
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 74/86 (86%), Gaps = 2/86 (2%)
Query: 5 FKMAP--KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESA 62
+K P KVQKVMVQPINLIFR+LQNR+R+Q+WLYENV LRIEGHI+GFDEYMN+VL+ A
Sbjct: 3 YKGGPGQKVQKVMVQPINLIFRYLQNRARIQVWLYENVILRIEGHIIGFDEYMNLVLDDA 62
Query: 63 EEYNIKSKTRKALGTIMLKGDNITLI 88
EE K+K RK +G I+LKG+NITLI
Sbjct: 63 EEIYTKTKQRKQVGRILLKGENITLI 88
>gi|282848216|gb|ADB02889.1| small nuclear ribonucleoprotein polypeptide [Jatropha curcas]
Length = 88
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 73/83 (87%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ++M QPINLIFRFLQ+++R+QIWL+E +LRIEG I+GFDEYMN+VL+ AEE N+
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNV 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K KTRK+LG I+LKGDNITL+ N
Sbjct: 63 KKKTRKSLGRILLKGDNITLMMN 85
>gi|296476433|tpg|DAA18548.1| TPA: small nuclear ribonucleoprotein polypeptide E-like [Bos
taurus]
Length = 92
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 74/85 (87%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+++WLYE VN+R EG I+GFDE MN+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIRVWLYEQVNMRTEGSIIGFDECMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSVS 91
>gi|159472134|ref|XP_001694206.1| small nuclear ribonucleoprotein E [Chlamydomonas reinhardtii]
gi|158276869|gb|EDP02639.1| small nuclear ribonucleoprotein E [Chlamydomonas reinhardtii]
Length = 87
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 72/84 (85%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
MA KVQK+M QPINL+FRFLQ++ +VQIWL++ +LR+EG I+GFDEYMN+VL+ AEE +
Sbjct: 1 MATKVQKIMTQPINLMFRFLQSKQKVQIWLFDQADLRVEGRIIGFDEYMNLVLDEAEEVS 60
Query: 67 IKSKTRKALGTIMLKGDNITLIQN 90
+K KTRK LG I+LKGDNITLIQ
Sbjct: 61 MKRKTRKTLGRILLKGDNITLIQT 84
>gi|313586495|gb|ADR71258.1| small nuclear ribonucleoprotein E [Hevea brasiliensis]
Length = 88
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 73/83 (87%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ++M QPINLIFRFLQ+++R+QIWL+E ++RIEG I+GFDEYMN+VL+ AEE NI
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDMRIEGRIIGFDEYMNLVLDDAEEVNI 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K KTRK+LG I+LKGDNITL+ N
Sbjct: 63 KKKTRKSLGRILLKGDNITLMMN 85
>gi|312005|emb|CAA46626.1| small nuclear ribonucleoprotein E [Mus musculus]
gi|338269|gb|AAA36621.1| small nuclear ribonucleoprotein E, partial [Homo sapiens]
Length = 81
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/80 (73%), Positives = 73/80 (91%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTR 72
KVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE + K+K+R
Sbjct: 1 KVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSR 60
Query: 73 KALGTIMLKGDNITLIQNLN 92
K LG IMLKGDNITL+Q+++
Sbjct: 61 KQLGRIMLKGDNITLLQSVS 80
>gi|255581898|ref|XP_002531748.1| Small nuclear ribonucleoprotein E, putative [Ricinus communis]
gi|223528618|gb|EEF30637.1| Small nuclear ribonucleoprotein E, putative [Ricinus communis]
Length = 86
Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 72/83 (86%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ++M QPINLIFRFLQ+++R+QIWL+E +LRIEG I+GFDEYMN+VL+ AEE N+
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNV 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K KTRK LG I+LKGDNITL+ N
Sbjct: 63 KKKTRKTLGRILLKGDNITLMMN 85
>gi|348572632|ref|XP_003472096.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia
porcellus]
Length = 92
Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 74/85 (87%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRS++Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSQIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDN L+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGDNTILLQSVS 91
>gi|359691083|emb|CBH32487.1| small nuclear ribonucleoprotein polypeptide E [Oreochromis
mossambicus]
Length = 92
Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/83 (72%), Positives = 73/83 (87%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+ IEG I+GFDEYMN+VL+ AEE +K+
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMGIEGCIIGFDEYMNLVLDDAEEVPMKT 68
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
K RK LG IMLKGDNI L+Q+++
Sbjct: 69 KNRKPLGRIMLKGDNIPLLQSVS 91
>gi|356547766|ref|XP_003542280.1| PREDICTED: small nuclear ribonucleoprotein E-like [Glycine max]
gi|255627911|gb|ACU14300.1| unknown [Glycine max]
Length = 88
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 72/83 (86%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ+VM QPINLIFRFLQ+++R+QIWL+E +LRIEG I+GFDEYMN+VL+ AEE NI
Sbjct: 3 STKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNI 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K K+RK LG I+LKGDNITL+ N
Sbjct: 63 KKKSRKTLGRILLKGDNITLMMN 85
>gi|348563323|ref|XP_003467457.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia
porcellus]
Length = 92
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 74/85 (87%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+L+N SR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ EE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLENTSRIQVWLYEQVNMRIEGCIVGFDEYMNLVLDDEEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSVS 91
>gi|356508935|ref|XP_003523208.1| PREDICTED: small nuclear ribonucleoprotein E-like [Glycine max]
gi|356516401|ref|XP_003526883.1| PREDICTED: small nuclear ribonucleoprotein E [Glycine max]
gi|388501720|gb|AFK38926.1| unknown [Lotus japonicus]
Length = 88
Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 72/83 (86%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ+VM QPINLIFRFLQ+++R+QIWL+E +LRIEG I+GFDEYMN+VL+ AEE N+
Sbjct: 3 STKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNV 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K K+RK LG I+LKGDNITL+ N
Sbjct: 63 KKKSRKTLGRILLKGDNITLMMN 85
>gi|351707608|gb|EHB10527.1| Small nuclear ribonucleoprotein E [Heterocephalus glaber]
Length = 92
Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 74/85 (87%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQN ++Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNVRKIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSVS 91
>gi|428163538|gb|EKX32604.1| small nuclear ribonucleoprotein-like protein [Guillardia theta
CCMP2712]
Length = 91
Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/80 (73%), Positives = 70/80 (87%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K QK M QPINLIFRFLQN+SR+QIWLYEN +LRIEG I+GFDEYMN+VL++AEEY+ K
Sbjct: 3 KQQKTMTQPINLIFRFLQNKSRIQIWLYENADLRIEGQIIGFDEYMNLVLDNAEEYHKKK 62
Query: 70 KTRKALGTIMLKGDNITLIQ 89
TRK LG I+LKG+NITL+Q
Sbjct: 63 GTRKPLGRILLKGENITLMQ 82
>gi|168008828|ref|XP_001757108.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691606|gb|EDQ77967.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 87
Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 72/84 (85%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
MA KVQ++M QPINLIFRFLQ++SR+QIWL+E ++RIEG I+GFDEYMN+VLE AEE +
Sbjct: 1 MATKVQRIMTQPINLIFRFLQSKSRIQIWLFEQKDMRIEGRIIGFDEYMNLVLEEAEEVS 60
Query: 67 IKSKTRKALGTIMLKGDNITLIQN 90
+K TRK LG I+LKGDNITL+ N
Sbjct: 61 LKKNTRKPLGRILLKGDNITLMMN 84
>gi|449457117|ref|XP_004146295.1| PREDICTED: small nuclear ribonucleoprotein E-like isoform 2
[Cucumis sativus]
Length = 86
Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 73/83 (87%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ++M QPINLIFRFLQ+++R+QIWL+E +LRIEG I+GFDEYMN+VL+ AEE N+
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNV 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K K++KALG I+LKGDNITL+ N
Sbjct: 63 KKKSKKALGRILLKGDNITLMMN 85
>gi|449457115|ref|XP_004146294.1| PREDICTED: small nuclear ribonucleoprotein E-like isoform 1
[Cucumis sativus]
Length = 88
Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 73/83 (87%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ++M QPINLIFRFLQ+++R+QIWL+E +LRIEG I+GFDEYMN+VL+ AEE N+
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNV 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K K++KALG I+LKGDNITL+ N
Sbjct: 63 KKKSKKALGRILLKGDNITLMMN 85
>gi|195606896|gb|ACG25278.1| small nuclear ribonucleoprotein E [Zea mays]
gi|195611048|gb|ACG27354.1| small nuclear ribonucleoprotein E [Zea mays]
gi|413947730|gb|AFW80379.1| small nuclear ribonucleoprotein E [Zea mays]
Length = 88
Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 72/83 (86%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ++M QPINLIFRFLQ+++R+QIWL+E +LRIEG I+GFDEYMN+VLE AEE N+
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEINV 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K TRK+LG I+LKGDNITL+ N
Sbjct: 63 KKNTRKSLGRILLKGDNITLMMN 85
>gi|357145040|ref|XP_003573502.1| PREDICTED: small nuclear ribonucleoprotein E-like [Brachypodium
distachyon]
Length = 88
Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 72/83 (86%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ++M QPINLIFRFLQ+++R+QIWL+E +LRIEG I+GFDEYMN+VLE AEE N+
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEINV 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K TRK+LG I+LKGDNITL+ N
Sbjct: 63 KKNTRKSLGRILLKGDNITLMMN 85
>gi|302845652|ref|XP_002954364.1| hypothetical protein VOLCADRAFT_64746 [Volvox carteri f.
nagariensis]
gi|300260294|gb|EFJ44514.1| hypothetical protein VOLCADRAFT_64746 [Volvox carteri f.
nagariensis]
Length = 87
Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 71/84 (84%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
MA KVQK+M QPINL+FRFLQ++ +VQIWLY+ +LR+EG I+GFDEYMN+VL+ AEE +
Sbjct: 1 MATKVQKIMTQPINLMFRFLQSKQKVQIWLYDQADLRVEGRIIGFDEYMNLVLDEAEEVS 60
Query: 67 IKSKTRKALGTIMLKGDNITLIQN 90
+K K RK LG I+LKGDNITLIQ
Sbjct: 61 MKRKNRKTLGRILLKGDNITLIQT 84
>gi|302845648|ref|XP_002954362.1| hypothetical protein VOLCADRAFT_82766 [Volvox carteri f.
nagariensis]
gi|300260292|gb|EFJ44512.1| hypothetical protein VOLCADRAFT_82766 [Volvox carteri f.
nagariensis]
Length = 87
Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 71/84 (84%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
MA K+QK+M QPINL+FRFLQ++ +VQIWLY+ +LRIEG I+GFDEYMN+VL+ AEE +
Sbjct: 1 MATKIQKIMTQPINLMFRFLQSKQKVQIWLYDQADLRIEGRIIGFDEYMNLVLDEAEEVS 60
Query: 67 IKSKTRKALGTIMLKGDNITLIQN 90
+K K RK LG I+LKGDNITLIQ
Sbjct: 61 MKRKNRKTLGRILLKGDNITLIQT 84
>gi|357146132|ref|XP_003573886.1| PREDICTED: small nuclear ribonucleoprotein E-like [Brachypodium
distachyon]
Length = 88
Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 72/83 (86%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ++M QPINLIFRFLQ+++R+QIWL+E ++RIEG I+GFDEYMN+VLE AEE NI
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDMRIEGRIIGFDEYMNLVLEDAEEINI 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K TRK+LG I+LKGDNITL+ N
Sbjct: 63 KKNTRKSLGRILLKGDNITLMMN 85
>gi|115443949|ref|NP_001045754.1| Os02g0126700 [Oryza sativa Japonica Group]
gi|41053075|dbj|BAD08019.1| putative small nuclear ribonucleoprotein polypeptide E [Oryza
sativa Japonica Group]
gi|113535285|dbj|BAF07668.1| Os02g0126700 [Oryza sativa Japonica Group]
gi|215686543|dbj|BAG88796.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189970|gb|EEC72397.1| hypothetical protein OsI_05681 [Oryza sativa Indica Group]
gi|222622094|gb|EEE56226.1| hypothetical protein OsJ_05214 [Oryza sativa Japonica Group]
Length = 88
Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 72/83 (86%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ++M QPINLIFRFLQ+++R+QIWL+E +LRIEG I+GFDEYMN+VL+ AEE NI
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEINI 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K TRK+LG I+LKGDNITL+ N
Sbjct: 63 KKDTRKSLGRILLKGDNITLMMN 85
>gi|449444030|ref|XP_004139778.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis
sativus]
gi|449444032|ref|XP_004139779.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis
sativus]
gi|449502888|ref|XP_004161771.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis
sativus]
Length = 88
Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 72/83 (86%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ++M QPINLIFRFLQ+++R+QIWL+E +LRIEG I+GFDEYMN+VL+ AEE N+
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNV 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K K+RK LG I+LKGDNITL+ N
Sbjct: 63 KKKSRKTLGRILLKGDNITLMMN 85
>gi|255629853|gb|ACU15277.1| unknown [Glycine max]
Length = 88
Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 71/83 (85%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ+VM QPINLIFRFLQ ++R+QIWL+E +LRIEG I+GFDEYMN+VL+ AEE N+
Sbjct: 3 STKVQRVMTQPINLIFRFLQGKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNV 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K K+RK LG I+LKGDNITL+ N
Sbjct: 63 KKKSRKTLGRILLKGDNITLMMN 85
>gi|195638708|gb|ACG38822.1| small nuclear ribonucleoprotein E [Zea mays]
gi|223945527|gb|ACN26847.1| unknown [Zea mays]
gi|414875728|tpg|DAA52859.1| TPA: Small nuclear ribonucleoprotein E isoform 1 [Zea mays]
gi|414875729|tpg|DAA52860.1| TPA: Small nuclear ribonucleoprotein E isoform 2 [Zea mays]
Length = 88
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 71/83 (85%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ++M QPINLIFRFLQ+++R+QIWL+E +LRIEG I+GFDEYMN+VLE AEE N+
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEINV 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K TRK LG I+LKGDNITL+ N
Sbjct: 63 KKNTRKTLGRILLKGDNITLMMN 85
>gi|356562483|ref|XP_003549500.1| PREDICTED: small nuclear ribonucleoprotein E [Glycine max]
gi|255628153|gb|ACU14421.1| unknown [Glycine max]
Length = 88
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 72/83 (86%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ+VM QPINLIFRFLQ+++R+QIWL+E +LRIEG I+GFDEYMN+VL+ AEE +I
Sbjct: 3 STKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVSI 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K K+RK LG I+LKGDNITL+ N
Sbjct: 63 KKKSRKTLGRILLKGDNITLMMN 85
>gi|354468865|ref|XP_003496871.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cricetulus
griseus]
gi|344247265|gb|EGW03369.1| Small nuclear ribonucleoprotein E [Cricetulus griseus]
Length = 92
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 73/85 (85%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+ IEG I+G DEYMN+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMWIEGCIIGLDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNIT +Q+++
Sbjct: 67 KTKSRKQLGQIMLKGDNITQLQSVS 91
>gi|357455361|ref|XP_003597961.1| Small nuclear ribonucleoprotein E [Medicago truncatula]
gi|357491039|ref|XP_003615807.1| Small nuclear ribonucleoprotein E [Medicago truncatula]
gi|355487009|gb|AES68212.1| Small nuclear ribonucleoprotein E [Medicago truncatula]
gi|355517142|gb|AES98765.1| Small nuclear ribonucleoprotein E [Medicago truncatula]
gi|388498322|gb|AFK37227.1| unknown [Medicago truncatula]
Length = 88
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 72/83 (86%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ+VM QPINLIFRFLQ+++R+QIWL+E +LRIEG I+GFDEYMN+VL+ AEE N+
Sbjct: 3 STKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNV 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K K++K LG I+LKGDNITL+ N
Sbjct: 63 KKKSKKTLGRILLKGDNITLMMN 85
>gi|242051601|ref|XP_002454946.1| hypothetical protein SORBIDRAFT_03g001950 [Sorghum bicolor]
gi|241926921|gb|EES00066.1| hypothetical protein SORBIDRAFT_03g001950 [Sorghum bicolor]
Length = 88
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 72/83 (86%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ++M QPINLIFRFLQ+++R+QIWL+E +LRIEG I+GFDEYMN+VL+ AEE N+
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINV 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K TRK+LG I+LKGDNITL+ N
Sbjct: 63 KKNTRKSLGRILLKGDNITLMMN 85
>gi|426257308|ref|XP_004022271.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Ovis aries]
Length = 92
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 73/85 (85%)
Query: 5 FKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEE 64
+ KVQKVMVQPINLIFR+LQN+S++Q+WLYE VN+ IEG I+GFDEY+N+VL+ AEE
Sbjct: 4 WSQGQKVQKVMVQPINLIFRYLQNKSQIQVWLYEQVNIWIEGCIIGFDEYVNLVLDDAEE 63
Query: 65 YNIKSKTRKALGTIMLKGDNITLIQ 89
+ K+K+RK LG IMLKGDNITL+Q
Sbjct: 64 IHSKTKSRKQLGWIMLKGDNITLLQ 88
>gi|391347407|ref|XP_003747954.1| PREDICTED: probable small nuclear ribonucleoprotein E-like
[Metaseiulus occidentalis]
Length = 90
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 74/86 (86%)
Query: 5 FKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEE 64
+K KVQKVMVQPINLIFR+LQNR+++Q+WLYEN +LRIEG+I+GFDEYMN+VL+ AEE
Sbjct: 2 YKGNTKVQKVMVQPINLIFRYLQNRAKIQVWLYENTSLRIEGYIIGFDEYMNLVLDEAEE 61
Query: 65 YNIKSKTRKALGTIMLKGDNITLIQN 90
+K+ RK +G I+LKG+NITL+ N
Sbjct: 62 VYVKTGHRKTIGRILLKGENITLLMN 87
>gi|7269933|emb|CAB81026.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana]
Length = 86
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 71/83 (85%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ++M QPINLIFRFLQ+++R+QIWL+E +LRIEG I GFDEYMN+VL+ AEE +I
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSI 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K KTRK LG I+LKGDNITL+ N
Sbjct: 63 KKKTRKPLGRILLKGDNITLMMN 85
>gi|226529493|ref|NP_001148430.1| small nuclear ribonucleoprotein E [Zea mays]
gi|195619228|gb|ACG31444.1| small nuclear ribonucleoprotein E [Zea mays]
Length = 88
Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 72/83 (86%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ++M QPINLIFRFLQ+++R+QIWL+E +LRIEG I+GFDEY+N+VLE AEE N+
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYINLVLEDAEEINV 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K TRK+LG I+LKGDNITL+ N
Sbjct: 63 KKNTRKSLGRILLKGDNITLMMN 85
>gi|18417572|ref|NP_567844.1| small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|297798942|ref|XP_002867355.1| hypothetical protein ARALYDRAFT_913445 [Arabidopsis lyrata subsp.
lyrata]
gi|21593343|gb|AAM65292.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana]
gi|51968366|dbj|BAD42875.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana]
gi|51968768|dbj|BAD43076.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana]
gi|51971773|dbj|BAD44551.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana]
gi|88010920|gb|ABD38873.1| At4g30330 [Arabidopsis thaliana]
gi|297313191|gb|EFH43614.1| hypothetical protein ARALYDRAFT_913445 [Arabidopsis lyrata subsp.
lyrata]
gi|332660353|gb|AEE85753.1| small nuclear ribonucleoprotein E [Arabidopsis thaliana]
Length = 88
Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 71/83 (85%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ++M QPINLIFRFLQ+++R+QIWL+E +LRIEG I GFDEYMN+VL+ AEE +I
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSI 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K KTRK LG I+LKGDNITL+ N
Sbjct: 63 KKKTRKPLGRILLKGDNITLMMN 85
>gi|440796303|gb|ELR17412.1| small nuclear ribonucleoprotein e, putative [Acanthamoeba
castellanii str. Neff]
Length = 90
Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 69/83 (83%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
PKVQK+M QPINLIFRFLQN+SR+QI LYEN +LRIEG I+GFDEYMN+VL+ AEE +
Sbjct: 5 GPKVQKIMTQPINLIFRFLQNKSRIQIMLYENTDLRIEGRIIGFDEYMNLVLDEAEEVST 64
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K TR LG I+LKGDNIT++ N
Sbjct: 65 KRGTRTPLGRILLKGDNITMMLN 87
>gi|299470361|emb|CBN78410.1| Small nuclear ribonucleoprotein-associated protein E [Ectocarpus
siliculosus]
Length = 97
Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 70/81 (86%)
Query: 11 VQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK 70
V+KVM QPI+LIFRFLQNR+RVQIWLYEN +RIEG ILGFDEYMN+VL+ AEE ++K+
Sbjct: 15 VKKVMTQPISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVDMKND 74
Query: 71 TRKALGTIMLKGDNITLIQNL 91
RK LG IMLKGD ITL+Q++
Sbjct: 75 ERKQLGRIMLKGDTITLMQSV 95
>gi|255563612|ref|XP_002522808.1| Small nuclear ribonucleoprotein E, putative [Ricinus communis]
gi|223538046|gb|EEF39659.1| Small nuclear ribonucleoprotein E, putative [Ricinus communis]
Length = 88
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/83 (66%), Positives = 71/83 (85%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ++M QPINLIFRFLQ+++R+Q WL+E +LRIEG I+GFDEYMN+VL+ AEE N+
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQFWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNV 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K K+RK LG I+LKGDNITL+ N
Sbjct: 63 KKKSRKTLGRILLKGDNITLMMN 85
>gi|339522121|gb|AEJ84225.1| small nuclear ribonucleoprotein E [Capra hircus]
Length = 79
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/78 (73%), Positives = 71/78 (91%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
MVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE + K+K+RK
Sbjct: 1 MVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQ 60
Query: 75 LGTIMLKGDNITLIQNLN 92
LG IMLKGDNITL+Q+++
Sbjct: 61 LGRIMLKGDNITLLQSVS 78
>gi|217071220|gb|ACJ83970.1| unknown [Medicago truncatula]
gi|388520551|gb|AFK48337.1| unknown [Medicago truncatula]
Length = 88
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 55/83 (66%), Positives = 71/83 (85%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ+VM QPINLIFRFLQ+++R+QIWL+E +LRIEG I+GFDEYMN+ L+ AEE N+
Sbjct: 3 STKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLALDDAEEVNV 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K K++K LG I+LKGDNITL+ N
Sbjct: 63 KKKSKKTLGRILLKGDNITLMMN 85
>gi|346468665|gb|AEO34177.1| hypothetical protein [Amblyomma maculatum]
Length = 99
Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 63/91 (69%), Positives = 74/91 (81%), Gaps = 7/91 (7%)
Query: 5 FKMAP--KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESA 62
FK P KVQKVMVQPINLIFR+LQNR+R+Q+WLYENV LRIEGHI+GFDEYMN+VL+ A
Sbjct: 3 FKGGPGQKVQKVMVQPINLIFRYLQNRARIQVWLYENVALRIEGHIIGFDEYMNLVLDDA 62
Query: 63 EEYNIKSKTRKAL-----GTIMLKGDNITLI 88
EE KSK RK + G I+LKG+NI+LI
Sbjct: 63 EEIYTKSKQRKQVAIPRPGRILLKGENISLI 93
>gi|328768113|gb|EGF78160.1| hypothetical protein BATDEDRAFT_90820 [Batrachochytrium
dendrobatidis JAM81]
Length = 91
Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 68/84 (80%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
MA K+QK+MVQPINLIFR LQ +SRVQIWLYE +RIEG ILGFDE+MN+VL+ AEE +
Sbjct: 1 MATKLQKIMVQPINLIFRMLQQKSRVQIWLYEQTEIRIEGQILGFDEFMNLVLDDAEEVS 60
Query: 67 IKSKTRKALGTIMLKGDNITLIQN 90
K+ RK LG I+LKGDNITL N
Sbjct: 61 TKTGARKQLGRILLKGDNITLFCN 84
>gi|440889654|gb|ELR44674.1| hypothetical protein M91_20945 [Bos grunniens mutus]
Length = 92
Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 73/85 (85%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+++ LYE VN+R EG I+GFDE MN+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIRVRLYEQVNMRTEGSIIGFDECMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSVS 91
>gi|225455956|ref|XP_002278114.1| PREDICTED: small nuclear ribonucleoprotein E [Vitis vinifera]
gi|297734216|emb|CBI15463.3| unnamed protein product [Vitis vinifera]
Length = 88
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 55/83 (66%), Positives = 70/83 (84%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQ++M QPINLIFRFLQ+++R+QIWL+E +LRIEG I+GFDEYMN+VL+ AEE N+
Sbjct: 3 TTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNV 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K T+K LG I+LKGDNITL+ N
Sbjct: 63 KKNTKKTLGRILLKGDNITLMMN 85
>gi|268571317|ref|XP_002641005.1| C. briggsae CBR-SNR-6 protein [Caenorhabditis briggsae]
gi|190360255|sp|A8XDT0.1|RUXE_CAEBR RecName: Full=Probable small nuclear ribonucleoprotein E;
Short=snRNP-E; AltName: Full=Sm protein E; Short=Sm-E;
Short=SmE
Length = 90
Score = 124 bits (310), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 55/80 (68%), Positives = 70/80 (87%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K+QKVMVQP+NLIFR+LQNR+RVQIWLYE+V R+EG+I+GFDE+MN+V + AEE N+K+
Sbjct: 5 KIQKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKT 64
Query: 70 KTRKALGTIMLKGDNITLIQ 89
K R +G I+LKGDNITLI
Sbjct: 65 KGRNKIGRILLKGDNITLIH 84
>gi|195615352|gb|ACG29506.1| small nuclear ribonucleoprotein E [Zea mays]
Length = 88
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 70/83 (84%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ++M QPINLIFRFLQ+++R+QIWL+E +LRIEG I+GFDEYMN+VLE AEE N+
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEINV 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K T K LG I+LKGDNITL+ N
Sbjct: 63 KKNTPKTLGRILLKGDNITLMMN 85
>gi|341891331|gb|EGT47266.1| hypothetical protein CAEBREN_05081 [Caenorhabditis brenneri]
gi|341897649|gb|EGT53584.1| hypothetical protein CAEBREN_23787 [Caenorhabditis brenneri]
Length = 90
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 70/82 (85%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
A K+QKVMVQP+NLIFR+LQNR+RVQIWLYE+V R+EG+I+GFDE+MN+V + AEE N+
Sbjct: 3 ARKLQKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNM 62
Query: 68 KSKTRKALGTIMLKGDNITLIQ 89
K+ R +G I+LKGDNITLI
Sbjct: 63 KTNARNKIGRILLKGDNITLIH 84
>gi|15224217|ref|NP_179464.1| putative small nuclear ribonucleoprotein [Arabidopsis thaliana]
gi|297836770|ref|XP_002886267.1| hypothetical protein ARALYDRAFT_900374 [Arabidopsis lyrata subsp.
lyrata]
gi|4185140|gb|AAD08943.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|21592486|gb|AAM64436.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|26452632|dbj|BAC43399.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|28973515|gb|AAO64082.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|297332107|gb|EFH62526.1| hypothetical protein ARALYDRAFT_900374 [Arabidopsis lyrata subsp.
lyrata]
gi|330251706|gb|AEC06800.1| putative small nuclear ribonucleoprotein [Arabidopsis thaliana]
Length = 88
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 70/83 (84%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ++M QPINLIFRFLQ+++R+QIWL+E +LRIEG I GFDEYMN+VL+ AEE +I
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSI 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K TRK LG I+LKGDNITL+ N
Sbjct: 63 KKNTRKPLGRILLKGDNITLMMN 85
>gi|116779305|gb|ABK21228.1| unknown [Picea sitchensis]
Length = 88
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/83 (66%), Positives = 70/83 (84%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+VQ++M QPINLIFRFLQ+++R+QIWL+E +LRIEG I+GFDEYMN+VLE AEE ++
Sbjct: 3 TTRVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEISV 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K KT K LG I+LKGDNITL+ N
Sbjct: 63 KRKTHKPLGRILLKGDNITLMMN 85
>gi|255087330|ref|XP_002505588.1| predicted protein [Micromonas sp. RCC299]
gi|226520858|gb|ACO66846.1| predicted protein [Micromonas sp. RCC299]
Length = 87
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/84 (65%), Positives = 69/84 (82%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
MA KVQ++M QPINLIFRFLQ ++R+QIWLYEN + +EG I+GFDEYMN+VL+ AEE N
Sbjct: 1 MATKVQRIMTQPINLIFRFLQTKARIQIWLYENTDTVVEGRIIGFDEYMNLVLDDAEEVN 60
Query: 67 IKSKTRKALGTIMLKGDNITLIQN 90
K TRK +G I+LKGDNIT++ N
Sbjct: 61 KKKGTRKTVGRILLKGDNITMMVN 84
>gi|320168707|gb|EFW45606.1| hypothetical protein CAOG_03590 [Capsaspora owczarzaki ATCC
30864]
Length = 87
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 73/87 (83%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ +VQKVMV PINLIF++LQ ++RVQIWLYE ++R+EG I+GFDEYMN+VL+ AEE N
Sbjct: 1 MSGRVQKVMVLPINLIFKYLQTKTRVQIWLYEQASMRVEGVIVGFDEYMNLVLDDAEELN 60
Query: 67 IKSKTRKALGTIMLKGDNITLIQNLNP 93
KS+TRK +G I+LKGDNITLI ++
Sbjct: 61 AKSQTRKNVGRILLKGDNITLIMGVSA 87
>gi|308470011|ref|XP_003097241.1| CRE-SNR-6 protein [Caenorhabditis remanei]
gi|308240461|gb|EFO84413.1| CRE-SNR-6 protein [Caenorhabditis remanei]
Length = 90
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/80 (67%), Positives = 70/80 (87%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K+QKVMVQP+NLIFR+LQNR+RVQIWLYE++ R+EG+I+GFDE+MN+V + AEE N+K+
Sbjct: 5 KLQKVMVQPVNLIFRYLQNRTRVQIWLYEDITHRLEGYIIGFDEFMNVVFDEAEEVNMKT 64
Query: 70 KTRKALGTIMLKGDNITLIQ 89
K R +G I+LKGDNITLI
Sbjct: 65 KGRNKIGRILLKGDNITLIH 84
>gi|325181229|emb|CCA15643.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 627
Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 54/86 (62%), Positives = 68/86 (79%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ +VQK M QPINL+FRFLQN++RVQIWLYE RIEG I+GFDEYMNIVL+ AEE +
Sbjct: 537 MSTRVQKPMTQPINLMFRFLQNKARVQIWLYEQTQTRIEGRIMGFDEYMNIVLDEAEEVD 596
Query: 67 IKSKTRKALGTIMLKGDNITLIQNLN 92
+K R LG I+LKGD ITL+ +++
Sbjct: 597 VKKAKRAPLGRILLKGDTITLMMSID 622
>gi|441598236|ref|XP_004087442.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Nomascus leucogenys]
Length = 92
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 74/85 (87%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+VQ+VMVQPINLIFR+L+NRS +Q+WLYE VN++IEG I+GFD+YMN+VL+ AEE +
Sbjct: 7 GKRVQRVMVQPINLIFRYLENRSWIQVWLYEQVNMQIEGCIIGFDKYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNI L+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGDNIPLLQSVS 91
>gi|17556060|ref|NP_499620.1| Protein SNR-6 [Caenorhabditis elegans]
gi|29428070|sp|Q9XTU6.1|RUXE_CAEEL RecName: Full=Probable small nuclear ribonucleoprotein E;
Short=snRNP-E; AltName: Full=Sm protein E; Short=Sm-E;
Short=SmE
gi|3979991|emb|CAB11551.1| Protein SNR-6 [Caenorhabditis elegans]
Length = 90
Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 54/80 (67%), Positives = 69/80 (86%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K+ KVMVQP+NLIFR+LQNR+RVQIWLYE+V R+EG+I+GFDE+MN+V + AEE N+K+
Sbjct: 5 KLNKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKT 64
Query: 70 KTRKALGTIMLKGDNITLIQ 89
K R +G I+LKGDNITLI
Sbjct: 65 KGRNKIGRILLKGDNITLIH 84
>gi|325181839|emb|CCA16294.1| small nuclear ribonucleoprotein homolog putative [Albugo
laibachii Nc14]
Length = 91
Score = 120 bits (301), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 54/86 (62%), Positives = 68/86 (79%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ +VQK M QPINL+FRFLQN++RVQIWLYE RIEG I+GFDEYMNIVL+ AEE +
Sbjct: 1 MSTRVQKPMTQPINLMFRFLQNKARVQIWLYEQTQTRIEGRIMGFDEYMNIVLDEAEEVD 60
Query: 67 IKSKTRKALGTIMLKGDNITLIQNLN 92
+K R LG I+LKGD ITL+ +++
Sbjct: 61 VKKAKRAPLGRILLKGDTITLMMSID 86
>gi|340379367|ref|XP_003388198.1| PREDICTED: small nuclear ribonucleoprotein E-like [Amphimedon
queenslandica]
Length = 93
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 69/81 (85%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
A KVQKVMVQPINLIFR+LQN+SRVQ+WLY N+RIEG I GFDE+MN+V+ AEE +
Sbjct: 5 AQKVQKVMVQPINLIFRYLQNKSRVQVWLYGRQNMRIEGVITGFDEFMNLVMSDAEEVYL 64
Query: 68 KSKTRKALGTIMLKGDNITLI 88
K++TRK +G I+L+GDN+TLI
Sbjct: 65 KTETRKRIGRILLRGDNVTLI 85
>gi|395531172|ref|XP_003767656.1| PREDICTED: uncharacterized protein LOC100930096 [Sarcophilus
harrisii]
Length = 226
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 72/91 (79%), Gaps = 7/91 (7%)
Query: 2 SGGFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLES 61
S GF + + Q NLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+
Sbjct: 142 SAGFPLTTRGQ-------NLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD 194
Query: 62 AEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
AEE + K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 195 AEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 225
>gi|167533668|ref|XP_001748513.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773032|gb|EDQ86677.1| predicted protein [Monosiga brevicollis MX1]
Length = 128
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 73/86 (84%), Gaps = 1/86 (1%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
+KVMVQPINL+FRFLQ RS+V IWLYE+ ++ IEG I+GFDEYMN+V++SAEE N K++T
Sbjct: 8 KKVMVQPINLMFRFLQKRSKVSIWLYEHKHMSIEGVIVGFDEYMNLVMDSAEEVNSKAQT 67
Query: 72 RKALGTIMLKGDNITLIQNLN-PDEV 96
R+ LG I+LKGDNI L+QNL PD +
Sbjct: 68 RQPLGRILLKGDNICLMQNLTEPDGI 93
>gi|431900697|gb|ELK08143.1| Small nuclear ribonucleoprotein E [Pteropus alecto]
Length = 79
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 70/78 (89%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
MVQPINLIFR+LQNRS++Q+WLYE VN+RIE I+GFDEYMN+VL+ AEE + K+K+RK
Sbjct: 1 MVQPINLIFRYLQNRSQIQVWLYEQVNMRIESCIVGFDEYMNLVLDDAEEIHSKTKSRKQ 60
Query: 75 LGTIMLKGDNITLIQNLN 92
+G IMLKGDNITL+Q+++
Sbjct: 61 VGWIMLKGDNITLLQSVS 78
>gi|296222762|ref|XP_002757308.1| PREDICTED: small nuclear ribonucleoprotein E-like [Callithrix
jacchus]
Length = 97
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/84 (65%), Positives = 71/84 (84%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNR +Q+W YE VN+RIEG ++G D+YMN+VL AEE + K+
Sbjct: 9 KVQKVMVQPINLIFRYLQNRLWIQVWPYEQVNMRIEGCVIGIDKYMNLVLGDAEEIHSKT 68
Query: 70 KTRKALGTIMLKGDNITLIQNLNP 93
K+RK LG +MLKGDN+TL+Q ++P
Sbjct: 69 KSRKRLGQMMLKGDNVTLLQPVSP 92
>gi|196001475|ref|XP_002110605.1| hypothetical protein TRIADDRAFT_22667 [Trichoplax adhaerens]
gi|190586556|gb|EDV26609.1| hypothetical protein TRIADDRAFT_22667 [Trichoplax adhaerens]
Length = 88
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 69/79 (87%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
+V+KVM+QPIN+IFRFLQN++RVQIWLYE N RIEG+ILGFDEYMN+VL+ A E +IK+
Sbjct: 6 RVKKVMIQPINVIFRFLQNKTRVQIWLYEQTNTRIEGYILGFDEYMNLVLDDAAEVSIKN 65
Query: 70 KTRKALGTIMLKGDNITLI 88
R+ +G I+LKGDNI+LI
Sbjct: 66 NQRRPIGRILLKGDNISLI 84
>gi|392334358|ref|XP_002725436.2| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
gi|392355007|ref|XP_002728648.2| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
Length = 92
Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 70/85 (82%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQP +LI R+LQNRSR+Q+WLYE VN+ IEG I+GFDEYMN+VL+ EE +
Sbjct: 7 GQKVQKVMVQPSSLIIRYLQNRSRIQVWLYEQVNMWIEGCIIGFDEYMNLVLDDTEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+ K LG IMLKGDNI L+Q+++
Sbjct: 67 KTKSGKQLGQIMLKGDNIALLQSVS 91
>gi|390458031|ref|XP_003732042.1| PREDICTED: small nuclear ribonucleoprotein E-like [Callithrix
jacchus]
Length = 89
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 72/85 (84%), Gaps = 3/85 (3%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLI L NRS++Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPINLI---LTNRSQIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 63
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 64 KTKSRKQLGRIMLKGDNITLLQSVS 88
>gi|410956998|ref|XP_003985122.1| PREDICTED: LOW QUALITY PROTEIN: putative small nuclear
ribonucleoprotein polypeptide E-like protein 1-like
[Felis catus]
Length = 103
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 70/85 (82%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRS +Q+W YE VN+ IE I+ FDEY+N+VL+ AEE +
Sbjct: 16 GQKVQKVMVQPINLIFRYLQNRSWIQVWFYEQVNMXIERCIIDFDEYVNLVLDDAEEIHS 75
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL Q+++
Sbjct: 76 KTKSRKQLGRIMLKGDNITLFQSVS 100
>gi|296473647|tpg|DAA15762.1| TPA: small nuclear ribonucleoprotein polypeptide E-like [Bos
taurus]
Length = 92
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 69/82 (84%)
Query: 11 VQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK 70
VQK VQPINLIFR LQNRSR+Q+WLYE VN+ EG +GFDEYMN+VL+ AE+ + K+K
Sbjct: 10 VQKGQVQPINLIFRCLQNRSRIQVWLYEQVNMWTEGCTIGFDEYMNLVLDDAEDIHSKTK 69
Query: 71 TRKALGTIMLKGDNITLIQNLN 92
+RK LG IMLKGDNITL+Q+++
Sbjct: 70 SRKQLGRIMLKGDNITLLQSVS 91
>gi|417395580|gb|JAA44844.1| Putative small nuclear ribonucleoprotein e [Desmodus rotundus]
Length = 92
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 73/85 (85%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+VQKVMVQPINLI R+LQ+RS++Q+WLYE VN+ IEG+++GFDEYMN+VL+ AEE +
Sbjct: 7 GQRVQKVMVQPINLIVRYLQDRSQIQLWLYEQVNVWIEGYVVGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG MLKG+NI L+QN++
Sbjct: 67 KTKSRKQLGRSMLKGNNIILLQNVS 91
>gi|354484098|ref|XP_003504228.1| PREDICTED: hypothetical protein LOC100764959 [Cricetulus griseus]
Length = 195
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 71/81 (87%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
QKVMVQPINL FR+LQN SR+Q+ LYE VN+RIEG I+GFDEYMN+VL+ AEE + K+K+
Sbjct: 114 QKVMVQPINLTFRYLQNWSRIQVRLYEQVNIRIEGCIIGFDEYMNLVLDDAEEIHSKTKS 173
Query: 72 RKALGTIMLKGDNITLIQNLN 92
RK LG IML+GDN+TL+Q+++
Sbjct: 174 RKQLGRIMLEGDNMTLLQSVS 194
>gi|333656537|gb|AEF68171.1| Sm-E-like protein [Physarum polycephalum]
Length = 90
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 68/81 (83%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQK M QPINLIFR+LQN+SR+QIWLYE ++RIEG I+GFDEYMN+VL+ A+E +K
Sbjct: 7 KVQKPMTQPINLIFRYLQNKSRIQIWLYEQNDVRIEGRIIGFDEYMNLVLDDADEIFVKK 66
Query: 70 KTRKALGTIMLKGDNITLIQN 90
T+K LG I+LKGDNITL+ N
Sbjct: 67 NTKKHLGRILLKGDNITLMMN 87
>gi|426386751|ref|XP_004059844.1| PREDICTED: small nuclear ribonucleoprotein E-like [Gorilla
gorilla gorilla]
Length = 92
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 71/85 (83%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVM Q INLIFR+LQNRSRVQ+ LYE VN+RIEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 GQKVQKVMAQLINLIFRYLQNRSRVQVRLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG +MLK D+ TL+Q+++
Sbjct: 67 KTKSRKQLGRLMLKRDDSTLLQSVS 91
>gi|390477421|ref|XP_002760651.2| PREDICTED: small nuclear ribonucleoprotein E-like [Callithrix
jacchus]
Length = 79
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 68/78 (87%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
M P NLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE + K+K+RK
Sbjct: 1 MGHPKNLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQ 60
Query: 75 LGTIMLKGDNITLIQNLN 92
LG IMLKGDNITL+Q+++
Sbjct: 61 LGRIMLKGDNITLLQSVS 78
>gi|302765919|ref|XP_002966380.1| hypothetical protein SELMODRAFT_230895 [Selaginella
moellendorffii]
gi|302792841|ref|XP_002978186.1| hypothetical protein SELMODRAFT_176675 [Selaginella
moellendorffii]
gi|300154207|gb|EFJ20843.1| hypothetical protein SELMODRAFT_176675 [Selaginella
moellendorffii]
gi|300165800|gb|EFJ32407.1| hypothetical protein SELMODRAFT_230895 [Selaginella
moellendorffii]
Length = 88
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 69/83 (83%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQ++M QPINLIFRFLQ+++ +Q+WL+E +LRIEG I+GFDEYMN+VL+ A E ++
Sbjct: 3 TSKVQRIMTQPINLIFRFLQSKATIQVWLFEQKDLRIEGRIIGFDEYMNLVLDDAYEISL 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K K+RK LG I+LKGDNITL+ N
Sbjct: 63 KKKSRKPLGRILLKGDNITLMMN 85
>gi|237844609|ref|XP_002371602.1| small nuclear ribonucleoprotein E, putative [Toxoplasma gondii
ME49]
gi|211969266|gb|EEB04462.1| small nuclear ribonucleoprotein E, putative [Toxoplasma gondii
ME49]
gi|221482996|gb|EEE21320.1| small nuclear ribonucleoprotein E, putative [Toxoplasma gondii
GT1]
gi|221503930|gb|EEE29607.1| small nuclear ribonucleoprotein E, putative [Toxoplasma gondii
VEG]
Length = 91
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 68/88 (77%)
Query: 1 MSGGFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLE 60
MSGG K+QK+M QPINLIFRF R RVQIWLYE ++RIEG I+GFDEYMN+VL+
Sbjct: 1 MSGGVMSNKKLQKIMTQPINLIFRFFTQRMRVQIWLYEQPDMRIEGRIMGFDEYMNMVLD 60
Query: 61 SAEEYNIKSKTRKALGTIMLKGDNITLI 88
AEE +K +TR +G I+LKG+N+TLI
Sbjct: 61 DAEEVYLKKRTRIPVGRILLKGENVTLI 88
>gi|148707697|gb|EDL39644.1| small nuclear ribonucleoprotein E, isoform CRA_b [Mus musculus]
Length = 86
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 72/86 (83%), Gaps = 1/86 (1%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
MA + Q VQ NLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE +
Sbjct: 1 MAYRGQGQKVQK-NLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH 59
Query: 67 IKSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 60 SKTKSRKQLGRIMLKGDNITLLQSVS 85
>gi|145356609|ref|XP_001422520.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582763|gb|ABP00837.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 87
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 69/86 (80%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
MA KVQ++M QPINLIFRFLQ ++RVQIW+YEN + +EG I+GFDEYMN+VL+ AEE
Sbjct: 1 MATKVQRIMTQPINLIFRFLQTKARVQIWMYENPDTCVEGRIVGFDEYMNLVLDDAEEVT 60
Query: 67 IKSKTRKALGTIMLKGDNITLIQNLN 92
K R +G I+LKGDNITL++N++
Sbjct: 61 EKKSRRVGVGRILLKGDNITLMRNVS 86
>gi|257815604|gb|ACV70140.1| small nuclear ribonucleoprotein E [Jatropha curcas]
Length = 88
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 68/83 (81%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ+++ QPINLIFRFLQ+++R+QIWL+E +LRIEG I+GFDEYMN VL+ AEE N+
Sbjct: 3 STKVQRILPQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNSVLDDAEEVNV 62
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K K RK+LG I KGDNI L+ N
Sbjct: 63 KKKPRKSLGGIFFKGDNIILMMN 85
>gi|397521006|ref|XP_003830597.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Pan paniscus]
Length = 92
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/83 (65%), Positives = 72/83 (86%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
+VQ+VMV PINLIFR+LQNRS +Q+WLYE VN+ IEG I+GFD+YMN+VL+ AEE + K+
Sbjct: 9 RVQRVMVLPINLIFRYLQNRSWIQVWLYEQVNMWIEGCIIGFDKYMNLVLDDAEEIHSKT 68
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
K+RK LG I+LKGDNI L+Q+++
Sbjct: 69 KSRKQLGRIILKGDNIPLLQSVS 91
>gi|313228047|emb|CBY23197.1| unnamed protein product [Oikopleura dioica]
Length = 90
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 71/89 (79%), Gaps = 3/89 (3%)
Query: 1 MSGGFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLE 60
MSG KVQKVMVQPINL+FRF Q + RVQIWLY+ VNLR+EG I+GFDEYMN+VL+
Sbjct: 1 MSG---YGHKVQKVMVQPINLVFRFFQKKIRVQIWLYDVVNLRLEGIIVGFDEYMNLVLD 57
Query: 61 SAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
EE ++K+ ++ +G I+LKGDNITLIQ
Sbjct: 58 DVEEMHVKTHFKRNVGKILLKGDNITLIQ 86
>gi|392339645|ref|XP_003753865.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Rattus norvegicus]
Length = 169
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/80 (67%), Positives = 68/80 (85%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQ+ SR+Q+WL E V+ +IEG I+GFDEYMN+V + AEE + K+
Sbjct: 9 KVQKVMVQPINLIFRYLQSGSRIQVWLCEQVDAQIEGCIIGFDEYMNLVSDDAEEIHSKT 68
Query: 70 KTRKALGTIMLKGDNITLIQ 89
K+R+ G IMLKGDNITL+Q
Sbjct: 69 KSREQPGWIMLKGDNITLLQ 88
>gi|313239283|emb|CBY14233.1| unnamed protein product [Oikopleura dioica]
gi|313245445|emb|CBY40176.1| unnamed protein product [Oikopleura dioica]
Length = 90
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 71/89 (79%), Gaps = 3/89 (3%)
Query: 1 MSGGFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLE 60
MSG KVQKVMVQPINL+FRF Q + RVQIWLY+ +N+R+EG I+GFDEYMN+VL+
Sbjct: 1 MSG---YGHKVQKVMVQPINLVFRFFQKKIRVQIWLYDVINVRLEGIIVGFDEYMNLVLD 57
Query: 61 SAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
EE ++K+ +K +G I+LKGDNITLIQ
Sbjct: 58 DVEEMHVKTHFKKNVGKILLKGDNITLIQ 86
>gi|401398344|ref|XP_003880279.1| hypothetical protein NCLIV_007180 [Neospora caninum Liverpool]
gi|325114689|emb|CBZ50244.1| hypothetical protein NCLIV_007180 [Neospora caninum Liverpool]
Length = 91
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 67/88 (76%)
Query: 1 MSGGFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLE 60
MSG K+QK+M QPINLIFRF R RVQIWLYE ++RIEG I+GFDEYMN+VL+
Sbjct: 1 MSGAVMSNKKLQKIMTQPINLIFRFFTQRMRVQIWLYEQPDMRIEGRIMGFDEYMNMVLD 60
Query: 61 SAEEYNIKSKTRKALGTIMLKGDNITLI 88
AEE +K +TR +G I+LKG+N+TLI
Sbjct: 61 DAEEVYLKKRTRIPVGRILLKGENVTLI 88
>gi|119611901|gb|EAW91495.1| small nuclear ribonucleoprotein polypeptide E, isoform CRA_b
[Homo sapiens]
Length = 84
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 66/73 (90%)
Query: 20 NLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIM 79
NLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE + K+K+RK LG IM
Sbjct: 11 NLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIM 70
Query: 80 LKGDNITLIQNLN 92
LKGDNITL+Q+++
Sbjct: 71 LKGDNITLLQSVS 83
>gi|326933691|ref|XP_003212934.1| PREDICTED: small nuclear ribonucleoprotein E-like [Meleagris
gallopavo]
Length = 85
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 66/73 (90%)
Query: 20 NLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIM 79
NLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE + K+K+RK LG IM
Sbjct: 12 NLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIM 71
Query: 80 LKGDNITLIQNLN 92
LKGDNITL+Q+++
Sbjct: 72 LKGDNITLLQSVS 84
>gi|392346855|ref|XP_003749650.1| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
Length = 92
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 69/82 (84%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQ+ SR+Q+WL E V+ +IEG I+GFDEYMN+V + AEE + K+
Sbjct: 9 KVQKVMVQPINLIFRYLQSGSRIQVWLCEQVDAQIEGCIIGFDEYMNLVSDDAEEIHSKT 68
Query: 70 KTRKALGTIMLKGDNITLIQNL 91
K+R+ G IMLKGDNITL+Q +
Sbjct: 69 KSREQPGWIMLKGDNITLLQRV 90
>gi|332845410|ref|XP_003315041.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Pan troglodytes]
Length = 92
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 71/83 (85%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
+VQ+V V PINLIFR+LQNRS +Q+WLYE VN+ IEG I+GFD+YMN+VL+ AEE + K+
Sbjct: 9 RVQRVTVLPINLIFRYLQNRSWIQVWLYEQVNMWIEGCIIGFDKYMNLVLDDAEEIHSKT 68
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
K+RK LG I+LKGDNI L+Q+++
Sbjct: 69 KSRKQLGRIILKGDNIPLLQSVS 91
>gi|444724508|gb|ELW65111.1| Small nuclear ribonucleoprotein E [Tupaia chinensis]
Length = 92
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 68/85 (80%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
K QKVMVQPINLI R LQNRSR Q+WLYE VN+ IEG I+ FDEY+N+V + AEE +
Sbjct: 7 GQKAQKVMVQPINLILRNLQNRSRTQVWLYEQVNIWIEGCIISFDEYVNLVSDDAEESHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IML GDNITL+Q+++
Sbjct: 67 KTKSRKQLGRIMLIGDNITLLQSVS 91
>gi|338259|gb|AAB59365.1| small nuclear ribonucleic protein, partial [Homo sapiens]
Length = 92
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 66/73 (90%)
Query: 20 NLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIM 79
NLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE + K+K+RK LG IM
Sbjct: 19 NLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIM 78
Query: 80 LKGDNITLIQNLN 92
LKGDNITL+Q+++
Sbjct: 79 LKGDNITLLQSVS 91
>gi|390459179|ref|XP_003732244.1| PREDICTED: LOW QUALITY PROTEIN: putative small nuclear
ribonucleoprotein polypeptide E-like protein 1-like
[Callithrix jacchus]
Length = 115
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/92 (59%), Positives = 72/92 (78%), Gaps = 1/92 (1%)
Query: 2 SGGFKM-APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLE 60
SGG KVQK+MVQPINLIFR+LQN S++++WLYE VN+ IEG I+ FDEYMN+VL+
Sbjct: 23 SGGILWPGQKVQKIMVQPINLIFRYLQNGSQIEVWLYERVNIXIEGCIVSFDEYMNLVLD 82
Query: 61 SAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
AEE + K+K+RK G IMLKGD+ T +Q ++
Sbjct: 83 DAEESHSKTKSRKQXGRIMLKGDDSTWLQRVS 114
>gi|452822994|gb|EME30008.1| small nuclear ribonucleoprotein E [Galdieria sulphuraria]
Length = 85
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 64/83 (77%), Gaps = 2/83 (2%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M P K+M QPINLIFRFLQNR++V IWLYE N RIEG I GFDEYMN+VL+ A E+N
Sbjct: 1 MPPS--KIMTQPINLIFRFLQNRTKVVIWLYEETNFRIEGRISGFDEYMNLVLDEAVEWN 58
Query: 67 IKSKTRKALGTIMLKGDNITLIQ 89
+K TR LG I+LKGD ITLIQ
Sbjct: 59 VKKNTRINLGRILLKGDTITLIQ 81
>gi|395838983|ref|XP_003792383.1| PREDICTED: small nuclear ribonucleoprotein E [Otolemur garnettii]
Length = 90
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/69 (73%), Positives = 61/69 (88%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALG 76
K+K+RK LG
Sbjct: 67 KTKSRKQLG 75
>gi|281338088|gb|EFB13672.1| hypothetical protein PANDA_003444 [Ailuropoda melanoleuca]
Length = 83
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 65/81 (80%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+V+KVMVQPINL R+LQNRSR+ +WLYE VN+R EG I+GFDE MN++L+ AEE
Sbjct: 3 GQRVRKVMVQPINLTLRYLQNRSRIWVWLYEQVNMRKEGCIIGFDESMNLILDDAEEILS 62
Query: 68 KSKTRKALGTIMLKGDNITLI 88
K+K+RK LG IMLKGDNIT +
Sbjct: 63 KTKSRKQLGRIMLKGDNITFL 83
>gi|414875727|tpg|DAA52858.1| TPA: hypothetical protein ZEAMMB73_852117, partial [Zea mays]
Length = 177
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 61/71 (85%)
Query: 20 NLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIM 79
NLIFRFLQ+++R+QIWL+E +LRIEG I+GFDEYMN+VLE AEE N+K TRK LG I+
Sbjct: 104 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEINVKKNTRKTLGRIL 163
Query: 80 LKGDNITLIQN 90
LKGDNITL+ N
Sbjct: 164 LKGDNITLMMN 174
>gi|303288826|ref|XP_003063701.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454769|gb|EEH52074.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 90
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 72/86 (83%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
MA KVQ++M QPINLIFRFLQ ++R+QIWLYEN ++ +EG I+GFDEYMN+VL+ AEE N
Sbjct: 1 MATKVQRIMTQPINLIFRFLQTKARIQIWLYENTDVVVEGRIIGFDEYMNLVLDDAEEVN 60
Query: 67 IKSKTRKALGTIMLKGDNITLIQNLN 92
K T+K +G I+LKGDNIT+++NL
Sbjct: 61 KKKGTKKTVGRILLKGDNITMMRNLT 86
>gi|332212934|ref|XP_003255575.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Nomascus leucogenys]
Length = 94
Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 67/85 (78%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNR +Q+W+YE VNL I+GFDE N+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRPWIQVWVYEQVNLWTGSFIIGFDECKNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGD ITL+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGDTITLLQSVS 91
>gi|109018143|ref|XP_001098283.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Macaca mulatta]
Length = 92
Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 66/88 (75%)
Query: 5 FKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEE 64
+ KVQK + +PI+LIFRFLQNR ++Q+WLYE VN+ IEG I GFDEYMN VL AEE
Sbjct: 4 YGQGQKVQKAVTEPIDLIFRFLQNRFQIQVWLYEQVNIWIEGCITGFDEYMNFVLVDAEE 63
Query: 65 YNIKSKTRKALGTIMLKGDNITLIQNLN 92
K+K RK LG IMLKGDNIT + +++
Sbjct: 64 IYSKTKLRKQLGWIMLKGDNITQLHSVS 91
>gi|294952865|ref|XP_002787488.1| Small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
gi|239902490|gb|EER19284.1| Small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
Length = 93
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 67/83 (80%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K+QK+M PINLIFR+L ++R+ +WLY++ +LR+EG ILGFDEYMN+VL+ AEE N K
Sbjct: 6 KLQKIMTMPINLIFRYLTEKTRIVVWLYDHKDLRMEGVILGFDEYMNVVLDDAEEVNTKK 65
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
TR+ +G I+LKGDNITL+ ++
Sbjct: 66 DTRRPVGRILLKGDNITLMHAVS 88
>gi|388582050|gb|EIM22356.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 89
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 71/86 (82%), Gaps = 3/86 (3%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEE-- 64
M+ + Q+VMVQPIN+IF++LQ R+++QIWLY+NV+ R+EG I+GFDEYMN++L+ EE
Sbjct: 1 MSGRKQQVMVQPINVIFKYLQQRTKIQIWLYDNVDCRLEGRIIGFDEYMNVILDDVEEVF 60
Query: 65 YNIK-SKTRKALGTIMLKGDNITLIQ 89
Y K S+ R +LG I+LKGDNITLIQ
Sbjct: 61 YGKKQSQPRNSLGRILLKGDNITLIQ 86
>gi|428671949|gb|EKX72864.1| small nuclear ribonucleoprotein, putative [Babesia equi]
Length = 89
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 62/79 (78%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K+QK+M QPIN IFRF + +RVQIWLY+ N RIEG I+GFDEYMN+VL+ AEE +K
Sbjct: 7 KLQKIMTQPINQIFRFFTSGTRVQIWLYDQPNTRIEGRIMGFDEYMNMVLDDAEEVTLKK 66
Query: 70 KTRKALGTIMLKGDNITLI 88
TRK +G I+LKGD +TLI
Sbjct: 67 DTRKDIGRILLKGDCMTLI 85
>gi|294956367|ref|XP_002788910.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239904570|gb|EER20706.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
Length = 94
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 65/80 (81%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K+QK+M PINLIFR+L ++R+ +WLY++ +LR+EG ILGFDEYMN+VL+ AEE N K
Sbjct: 6 KLQKIMTMPINLIFRYLTEKTRIVVWLYDHKDLRMEGVILGFDEYMNVVLDDAEEVNTKK 65
Query: 70 KTRKALGTIMLKGDNITLIQ 89
TR+ +G I+LKGDNITL+
Sbjct: 66 DTRRPVGRILLKGDNITLMH 85
>gi|403351354|gb|EJY75167.1| putative small nuclear ribonucleoprotein E [Oxytricha trifallax]
Length = 91
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 67/83 (80%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K+QK+M++PI LI++F Q +SRV+IWLYEN +LRIEG I+GFDEYMN VL+ AEE K
Sbjct: 8 KLQKLMIRPIFLIYKFFQTKSRVEIWLYENADLRIEGKIIGFDEYMNTVLDDAEEIYQKK 67
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
R+ LG I+LKGDNI+LI N++
Sbjct: 68 GNRRKLGRIILKGDNISLICNIS 90
>gi|392571823|gb|EIW64995.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 87
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 71/86 (82%), Gaps = 1/86 (1%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ + Q+VMVQPIN+IF+ LQ R++V IWLY+N+++RIEG I+GFDE+MNIV+E A E
Sbjct: 1 MSGRQQRVMVQPINVIFKNLQQRTKVVIWLYDNIDMRIEGTIIGFDEFMNIVIEDAAEVY 60
Query: 67 IK-SKTRKALGTIMLKGDNITLIQNL 91
+K +K R+ LG I+LKGDNITLIQ +
Sbjct: 61 VKDAKPRRELGRILLKGDNITLIQQV 86
>gi|389584836|dbj|GAB67567.1| small nuclear ribonucleoprotein E [Plasmodium cynomolgi strain B]
Length = 94
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 62/79 (78%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K+QK+M QPIN IFRF N++ VQIWLY+ + RIEG ILGFDEYMN+VL+ + E ++K
Sbjct: 7 KLQKIMTQPINQIFRFFTNKTVVQIWLYDKPDTRIEGKILGFDEYMNMVLDESAEVSVKK 66
Query: 70 KTRKALGTIMLKGDNITLI 88
TRK LG I+LKGD ITLI
Sbjct: 67 NTRKDLGKILLKGDTITLI 85
>gi|221058403|ref|XP_002259847.1| small nuclear ribonucleoprotein [Plasmodium knowlesi strain H]
gi|193809920|emb|CAQ41114.1| small nuclear ribonucleoprotein, putative [Plasmodium knowlesi
strain H]
Length = 96
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 62/79 (78%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K+QK+M QPIN IFRF N++ VQIWLY+ + RIEG ILGFDEYMN+VL+ + E ++K
Sbjct: 7 KLQKIMTQPINQIFRFFTNKTMVQIWLYDKPDTRIEGKILGFDEYMNMVLDESAEVSVKK 66
Query: 70 KTRKALGTIMLKGDNITLI 88
TRK LG I+LKGD ITLI
Sbjct: 67 NTRKDLGKILLKGDTITLI 85
>gi|389751015|gb|EIM92088.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 87
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ + Q+VMVQPIN+IF+ LQ R++V +WLY+N+ +RIEG I+GFDE+MNIV++ A E
Sbjct: 1 MSGRQQRVMVQPINVIFKNLQQRTKVVVWLYDNIEMRIEGRIIGFDEFMNIVIDDAAEVY 60
Query: 67 IK-SKTRKALGTIMLKGDNITLIQNL 91
+K +K R+ LG IMLKGDNITLIQ +
Sbjct: 61 VKEAKPRRELGRIMLKGDNITLIQQI 86
>gi|156096492|ref|XP_001614280.1| small nuclear ribonucleoprotein E [Plasmodium vivax Sal-1]
gi|148803154|gb|EDL44553.1| small nuclear ribonucleoprotein E, putative [Plasmodium vivax]
Length = 94
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 62/79 (78%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K+QK+M QPIN IFRF N++ VQIWLY+ + RIEG ILGFDEYMN+VL+ + E ++K
Sbjct: 7 KLQKIMTQPINQIFRFFTNKTVVQIWLYDKPDTRIEGKILGFDEYMNMVLDESAEVSLKK 66
Query: 70 KTRKALGTIMLKGDNITLI 88
TRK LG I+LKGD ITLI
Sbjct: 67 NTRKDLGKILLKGDTITLI 85
>gi|124513718|ref|XP_001350215.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
gi|23615632|emb|CAD52624.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
Length = 93
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 66/87 (75%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K+QK+M QPIN IFRF N++ VQIWLY+ ++RIEG ILGFDEYMN+VL+ +E ++K
Sbjct: 7 KLQKIMTQPINQIFRFFTNKTVVQIWLYDKPDMRIEGIILGFDEYMNMVLDQTKEISVKK 66
Query: 70 KTRKALGTIMLKGDNITLIQNLNPDEV 96
T+K LG I+LKGD ITLI + +E
Sbjct: 67 NTKKELGKILLKGDTITLIMEVKNEET 93
>gi|409083288|gb|EKM83645.1| hypothetical protein AGABI1DRAFT_110295 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426201658|gb|EKV51581.1| hypothetical protein AGABI2DRAFT_189809 [Agaricus bisporus var.
bisporus H97]
Length = 87
Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ + Q+VMVQPIN+IF+ LQ RS++ +WLY+N+ +RIEG I+GFDE+MN+V++ A E
Sbjct: 1 MSGRQQRVMVQPINVIFKNLQTRSKISVWLYDNIEMRIEGRIIGFDEFMNLVIDDAVEVY 60
Query: 67 IK-SKTRKALGTIMLKGDNITLIQNL 91
+K +K RK LG I+LKGDNITLIQ +
Sbjct: 61 VKEAKPRKELGRILLKGDNITLIQQI 86
>gi|290989307|ref|XP_002677279.1| predicted protein [Naegleria gruberi]
gi|284090886|gb|EFC44535.1| predicted protein [Naegleria gruberi]
Length = 89
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 64/83 (77%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K QK+M QPI +F +L+ SR+QIWLYEN +LRIEG+ILGFDEYMNIVL+ EE K
Sbjct: 3 KKQKMMTQPITQVFEYLKQGSRIQIWLYENTDLRIEGNILGFDEYMNIVLDETEEIYTKK 62
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
RK +G I+LKGDNI+LI+++
Sbjct: 63 SQRKKIGRILLKGDNISLIRDVT 85
>gi|70954423|ref|XP_746259.1| small nuclear ribonucleoprotein [Plasmodium chabaudi chabaudi]
gi|56526807|emb|CAH78091.1| small nuclear ribonucleoprotein, putative [Plasmodium chabaudi
chabaudi]
Length = 88
Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 63/79 (79%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K+QK+M QPIN IFRF N++ VQIWLY+ + RIEG ILGFDEYMN+VL+ ++E +IK
Sbjct: 7 KLQKIMTQPINQIFRFFTNQTVVQIWLYDKPHTRIEGKILGFDEYMNMVLDESKEISIKK 66
Query: 70 KTRKALGTIMLKGDNITLI 88
T+K LG I+LKGD ITLI
Sbjct: 67 NTKKELGKILLKGDTITLI 85
>gi|402224412|gb|EJU04475.1| LSM-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 93
Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 69/85 (81%), Gaps = 2/85 (2%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ + Q+VMVQPIN+IF+ LQ R VQIWLY+NV +RIEG I+GFDE+MN+VL+ A E
Sbjct: 1 MSGRQQRVMVQPINVIFKNLQQRVPVQIWLYDNVEMRIEGRIIGFDEFMNVVLDDASEVF 60
Query: 67 I--KSKTRKALGTIMLKGDNITLIQ 89
+ +SK+ ++LG I+LKGDNITLIQ
Sbjct: 61 VSEESKSPRSLGRILLKGDNITLIQ 85
>gi|170085379|ref|XP_001873913.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651465|gb|EDR15705.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 87
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 71/87 (81%), Gaps = 1/87 (1%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ + Q+VMVQPIN+IF+ LQ +++V IWLY+NV +RIEG I+GFDE+MNIV++ A E
Sbjct: 1 MSGRQQRVMVQPINVIFKNLQQKTKVVIWLYDNVEMRIEGRIIGFDEFMNIVIDEAAEVF 60
Query: 67 IK-SKTRKALGTIMLKGDNITLIQNLN 92
+K +K R+ LG I+LKGDNITLIQ ++
Sbjct: 61 VKDAKPRRELGRILLKGDNITLIQQVS 87
>gi|68071133|ref|XP_677480.1| small nuclear ribonucleoprotein [Plasmodium berghei strain ANKA]
gi|82596003|ref|XP_726082.1| small nuclear ribonucleoprotein [Plasmodium yoelii yoelii 17XNL]
gi|23481340|gb|EAA17647.1| small nuclear ribonucleoprotein homolog [Plasmodium yoelii
yoelii]
gi|56497614|emb|CAH98978.1| small nuclear ribonucleoprotein, putative [Plasmodium berghei]
Length = 88
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 63/79 (79%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K+QK+M QPIN IFRF N++ VQIWLY+ + RIEG ILGFDEYMN+VL+ ++E ++K
Sbjct: 7 KLQKIMTQPINQIFRFFTNQTVVQIWLYDKPHTRIEGKILGFDEYMNMVLDESKEISVKK 66
Query: 70 KTRKALGTIMLKGDNITLI 88
T+K LG I+LKGD ITLI
Sbjct: 67 NTKKELGKILLKGDTITLI 85
>gi|156083891|ref|XP_001609429.1| small nuclear ribonucleoprotein E [Babesia bovis T2Bo]
gi|154796680|gb|EDO05861.1| small nuclear ribonucleoprotein E, putative [Babesia bovis]
Length = 89
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 62/79 (78%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K+Q++M QPIN IFRF + +RVQIWLY+ NL+IEG I GFDEYMN+VLE EE +K
Sbjct: 7 KLQQIMTQPINQIFRFFTSGTRVQIWLYDQPNLKIEGKIRGFDEYMNMVLEDVEELYVKK 66
Query: 70 KTRKALGTIMLKGDNITLI 88
+ R+ALGTI+LKGD + LI
Sbjct: 67 QERRALGTILLKGDAMALI 85
>gi|395326007|gb|EJF58421.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 87
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ + Q+VMVQPIN+IF+ LQ R++V IWLY+N+ +RIEG I+GFDE+MN+V++ A E
Sbjct: 1 MSNRQQRVMVQPINVIFKNLQQRTKVVIWLYDNIEMRIEGTIIGFDEFMNVVIDDAAEVY 60
Query: 67 IK-SKTRKALGTIMLKGDNITLIQNL 91
+K +K R+ LG I+LKGDNITLIQ +
Sbjct: 61 VKDAKPRRELGRILLKGDNITLIQQV 86
>gi|449550635|gb|EMD41599.1| hypothetical protein CERSUDRAFT_61589 [Ceriporiopsis
subvermispora B]
Length = 87
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ + Q+VMVQPIN+IF+ LQ R+++ IWLY+N+ +RIEG I+GFDE+MN+V++ A E
Sbjct: 1 MSNRQQRVMVQPINVIFKNLQQRTKIVIWLYDNIEMRIEGRIIGFDEFMNVVIDEAAEVY 60
Query: 67 IK-SKTRKALGTIMLKGDNITLIQNL 91
+K +K R+ LG I+LKGDNITLIQ +
Sbjct: 61 VKDAKPRRELGRILLKGDNITLIQQV 86
>gi|164663173|ref|XP_001732708.1| hypothetical protein MGL_0483 [Malassezia globosa CBS 7966]
gi|159106611|gb|EDP45494.1| hypothetical protein MGL_0483 [Malassezia globosa CBS 7966]
Length = 87
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 67/84 (79%), Gaps = 1/84 (1%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ + Q+VM+QPIN+IFR LQ ++RV +WLY+NV R+EG I+GFDE+MN+ L AEE +
Sbjct: 1 MSGRQQRVMIQPINVIFRHLQQQTRVSLWLYDNVEYRLEGKIIGFDEFMNVTLADAEEVH 60
Query: 67 IKS-KTRKALGTIMLKGDNITLIQ 89
+ + K RK LG ++LKGDNITLIQ
Sbjct: 61 MNAQKDRKPLGRLLLKGDNITLIQ 84
>gi|302695849|ref|XP_003037603.1| hypothetical protein SCHCODRAFT_48486 [Schizophyllum commune
H4-8]
gi|300111300|gb|EFJ02701.1| hypothetical protein SCHCODRAFT_48486 [Schizophyllum commune
H4-8]
Length = 89
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ + Q+VMVQPIN+IF+ LQ +S V IWLY+N+ +RIEG I+GFDE+MN+V++ A E
Sbjct: 1 MSQRQQRVMVQPINVIFKNLQQKSHVCIWLYDNIEMRIEGRIIGFDEFMNVVIDEAVEVF 60
Query: 67 IK-SKTRKALGTIMLKGDNITLIQNL 91
IK +K R+ LG I+LKGDNITLIQ +
Sbjct: 61 IKEAKPRRELGRILLKGDNITLIQQV 86
>gi|390604052|gb|EIN13443.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 87
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVL-ESAEEY 65
M+ + Q+VMVQPIN+IF+ LQ R +V +WLY+N+ +RIEG I+GFDE+MN+V+ E+AE Y
Sbjct: 1 MSGRQQRVMVQPINVIFKNLQQRQKVVVWLYDNIEMRIEGRIIGFDEFMNVVMDEAAEVY 60
Query: 66 NIKSKTRKALGTIMLKGDNITLIQNL 91
++K R+ +G I+LKGDNITLIQ +
Sbjct: 61 VKEAKPRREIGRILLKGDNITLIQQV 86
>gi|403411704|emb|CCL98404.1| predicted protein [Fibroporia radiculosa]
Length = 87
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ + Q+VMVQPIN+IF+ LQ R++V IWLY+N+ +RIEG I+GFDE+MN+V++ A E
Sbjct: 1 MSGRQQRVMVQPINVIFKNLQQRTKVVIWLYDNIEMRIEGRIIGFDEFMNVVIDEATEVY 60
Query: 67 IK-SKTRKALGTIMLKGDNITLIQNL 91
+K +K ++ LG I+LKGDNITLIQ +
Sbjct: 61 VKDAKPQRELGRILLKGDNITLIQQV 86
>gi|299755906|ref|XP_002912145.1| hypothetical protein CC1G_13677 [Coprinopsis cinerea
okayama7#130]
gi|298411435|gb|EFI28651.1| hypothetical protein CC1G_13677 [Coprinopsis cinerea
okayama7#130]
Length = 87
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 69/84 (82%), Gaps = 1/84 (1%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ + Q+VMVQPIN+IF+ LQ +++V IWLY+N+ +R+EG I+GFDE+MN+V++ A E
Sbjct: 1 MSSRQQRVMVQPINVIFKNLQQKTKVVIWLYDNIEMRLEGRIIGFDEFMNLVIDDAAEVY 60
Query: 67 IK-SKTRKALGTIMLKGDNITLIQ 89
+K +K R+ LG I+LKGDNITLIQ
Sbjct: 61 VKDAKPRRELGRILLKGDNITLIQ 84
>gi|281353334|gb|EFB28918.1| hypothetical protein PANDA_013986 [Ailuropoda melanoleuca]
Length = 86
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/81 (61%), Positives = 63/81 (77%)
Query: 9 PKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIK 68
KVQKVMV I LIFR LQNR ++Q+WL+ N+RIEG I FDEY+N+VL+ A+E + K
Sbjct: 5 QKVQKVMVHTIILIFRSLQNRFQIQVWLHNQANMRIEGCIHSFDEYVNLVLDDAKEIHYK 64
Query: 69 SKTRKALGTIMLKGDNITLIQ 89
+K+RK LG IMLKGDN TL+Q
Sbjct: 65 TKSRKQLGQIMLKGDNTTLLQ 85
>gi|145329170|ref|NP_001077914.1| putative small nuclear ribonucleoprotein [Arabidopsis thaliana]
gi|330251707|gb|AEC06801.1| putative small nuclear ribonucleoprotein [Arabidopsis thaliana]
Length = 78
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/69 (66%), Positives = 58/69 (84%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ++M QPINLIFRFLQ+++R+QIWL+E +LRIEG I GFDEYMN+VL+ AEE +I
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSI 62
Query: 68 KSKTRKALG 76
K TRK LG
Sbjct: 63 KKNTRKPLG 71
>gi|254567830|ref|XP_002491025.1| Core Sm protein Sm E [Komagataella pastoris GS115]
gi|238030822|emb|CAY68745.1| Core Sm protein Sm E [Komagataella pastoris GS115]
Length = 88
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 66/85 (77%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ + QKVMV PINL+F+FLQ +S VQIWLYE N RI G I GFDE+MN+V++ A E N+
Sbjct: 3 SSRTQKVMVPPINLMFKFLQQQSTVQIWLYEQNNTRINGIIKGFDEFMNVVVDEAIEINL 62
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K++ ++ LG ++LKGDNITLI L+
Sbjct: 63 KTQKQRKLGRLLLKGDNITLISTLS 87
>gi|358056368|dbj|GAA97735.1| hypothetical protein E5Q_04414 [Mixia osmundae IAM 14324]
Length = 91
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 69/87 (79%), Gaps = 4/87 (4%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ + +VMVQPIN+IF++LQ +RVQ+WLY+ ++ R+EG I+GFDE+MN+VL+ AEE
Sbjct: 1 MSGRQSRVMVQPINVIFKYLQAGTRVQLWLYDILDFRLEGKIIGFDEFMNVVLDDAEEIY 60
Query: 67 IKSKT----RKALGTIMLKGDNITLIQ 89
IK K RK+LG ++LKG+NITLIQ
Sbjct: 61 IKRKDDRPERKSLGRLLLKGENITLIQ 87
>gi|343429490|emb|CBQ73063.1| probable small nuclear ribonucleoprotein E [Sporisorium reilianum
SRZ2]
Length = 85
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 59/77 (76%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTR 72
KV VQPIN+IFR LQ ++RV +WLY+N++ RIEG I+GFDE+MN+ L AEE K R
Sbjct: 6 KVSVQPINIIFRHLQQQTRVSLWLYDNIDFRIEGKIIGFDEFMNVTLADAEEVWTKKDKR 65
Query: 73 KALGTIMLKGDNITLIQ 89
LG I+LKGDNITLIQ
Sbjct: 66 VELGRILLKGDNITLIQ 82
>gi|193848588|gb|ACF22772.1| small nuclear ribonucleoprotein E [Brachypodium distachyon]
Length = 79
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 63/83 (75%), Gaps = 9/83 (10%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ++M QPI ++R+QIWL+E +LRIEG I+GFDEYMN+VLE AEE N+
Sbjct: 3 STKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEINV 53
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K TRK+LG I+LKGDNITL+ N
Sbjct: 54 KKNTRKSLGRILLKGDNITLMMN 76
>gi|399218257|emb|CCF75144.1| unnamed protein product [Babesia microti strain RI]
Length = 89
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 61/79 (77%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
++QK+M QPIN IFR + RVQIWL++ N++IEG I GFDEYMN+VL+ AE N K
Sbjct: 7 RLQKIMTQPINQIFRLFTSGVRVQIWLFDEPNIKIEGRIKGFDEYMNMVLDDAESVNQKH 66
Query: 70 KTRKALGTIMLKGDNITLI 88
KTRK+LG I+LKGD +TLI
Sbjct: 67 KTRKSLGKILLKGDCMTLI 85
>gi|195653717|gb|ACG46326.1| small nuclear ribonucleoprotein E [Zea mays]
Length = 80
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 57/68 (83%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ++M QPINLIFRFLQ+++R+QIWL+E +LRIEG I+GFDEYMN+VLE AEE N+
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEINV 62
Query: 68 KSKTRKAL 75
K T K L
Sbjct: 63 KKNTSKDL 70
>gi|397599586|gb|EJK57461.1| hypothetical protein THAOC_22489 [Thalassiosira oceanica]
Length = 86
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
Query: 7 MAP-KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY 65
M P KV+KVM PIN+IF LQ ++RV+IWLYE+ + IEG I+GFDEYMN VL+SA E
Sbjct: 1 MPPRKVKKVMTLPINVIFGHLQKKTRVKIWLYEDTRMSIEGQIIGFDEYMNFVLDSATEV 60
Query: 66 NIKSKTRKALGTIMLKGDNITLIQN 90
++K+ R +G I+LKGD ITL+Q
Sbjct: 61 DMKTGKRTDVGRILLKGDAITLMQT 85
>gi|125560150|gb|EAZ05598.1| hypothetical protein OsI_27814 [Oryza sativa Indica Group]
gi|125560167|gb|EAZ05615.1| hypothetical protein OsI_27832 [Oryza sativa Indica Group]
gi|222639919|gb|EEE68051.1| hypothetical protein OsJ_26051 [Oryza sativa Japonica Group]
Length = 79
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 63/83 (75%), Gaps = 9/83 (10%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ KVQ++M QPI ++R+QIWL+E +LRIEG I+GFDEYMN+VL+ AEE N+
Sbjct: 3 STKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINV 53
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K TRK+LG I+LKGDNITL+ N
Sbjct: 54 KKDTRKSLGRILLKGDNITLMMN 76
>gi|219127194|ref|XP_002183825.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404548|gb|EEC44494.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 100
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 65/88 (73%), Gaps = 1/88 (1%)
Query: 7 MAPK-VQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY 65
M PK V+KVM PIN+IF LQ +SRV++WLYE+ L+IEG I+GFDEYMN+V++ A E
Sbjct: 1 MPPKRVKKVMTLPINVIFSHLQKKSRVRLWLYEDSRLQIEGQIIGFDEYMNMVMDDAVEI 60
Query: 66 NIKSKTRKALGTIMLKGDNITLIQNLNP 93
+ K R+ +G I+LKGD +T+IQ P
Sbjct: 61 DSKKNVRQEVGRILLKGDAVTMIQEAQP 88
>gi|300176178|emb|CBK23489.2| unnamed protein product [Blastocystis hominis]
Length = 95
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 69/94 (73%), Gaps = 9/94 (9%)
Query: 7 MAPKVQKVMVQPINLIFRFLQ---------NRSRVQIWLYENVNLRIEGHILGFDEYMNI 57
M + K ++QPI++IFRFLQ +++ VQIWLY+ ++RIEG I GFDEYMNI
Sbjct: 1 MPRQDNKTLLQPIDIIFRFLQGISFFKMATHKTGVQIWLYDQPHVRIEGVINGFDEYMNI 60
Query: 58 VLESAEEYNIKSKTRKALGTIMLKGDNITLIQNL 91
VL++A E NIK KTRK LG I+LKGDN+TLIQ +
Sbjct: 61 VLDNASEVNIKMKTRKNLGKILLKGDNVTLIQEI 94
>gi|260947628|ref|XP_002618111.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238847983|gb|EEQ37447.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 88
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 63/83 (75%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K +K M+ PINLIF++LQ +S V IWLYE RI+G + GFDE+MNIV++ AEE + K
Sbjct: 5 KSKKSMLPPINLIFKYLQQQSVVTIWLYEQTQSRIQGKVRGFDEFMNIVIDEAEEISTKD 64
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
+R+ LG I+LKGDNITLI +L+
Sbjct: 65 GSRETLGRILLKGDNITLISSLD 87
>gi|297295616|ref|XP_002804656.1| PREDICTED: small nuclear ribonucleoprotein E-like [Macaca mulatta]
Length = 105
Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 66/90 (73%)
Query: 3 GGFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESA 62
G + P+ + +NLIFR+LQNRSR+Q+WLYE VN RIEG I+ FDEY+ +VL++A
Sbjct: 15 GQLQPGPESAEGYGVAVNLIFRYLQNRSRIQVWLYEQVNTRIEGCIISFDEYVKLVLDNA 74
Query: 63 EEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
EE K+K+R +G IMLKG NITL+Q+ +
Sbjct: 75 EEIYSKTKSRMQVGRIMLKGHNITLLQSFS 104
>gi|224003489|ref|XP_002291416.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973192|gb|EED91523.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 86
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 63/84 (75%), Gaps = 1/84 (1%)
Query: 7 MAP-KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY 65
M P KV+KVM PIN+IF LQ ++RV+IWLYE+ + IEG I+GFDEYMN VL+ AEE
Sbjct: 1 MPPRKVKKVMTLPINVIFGHLQKKNRVKIWLYEDTRMTIEGQIIGFDEYMNFVLDGAEEV 60
Query: 66 NIKSKTRKALGTIMLKGDNITLIQ 89
+ KS + +G I+LKGD ITL+Q
Sbjct: 61 DTKSGKKTEVGRILLKGDAITLMQ 84
>gi|338724569|ref|XP_003364968.1| PREDICTED: small nuclear ribonucleoprotein E-like, partial [Equus
caballus]
Length = 71
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 60/70 (85%)
Query: 23 FRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKG 82
F +L RSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE + K+K+RK LG IMLKG
Sbjct: 1 FLWLFQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKG 60
Query: 83 DNITLIQNLN 92
DNITL+Q+++
Sbjct: 61 DNITLLQSVS 70
>gi|443894424|dbj|GAC71772.1| small nuclear ribonucleoprotein E [Pseudozyma antarctica T-34]
Length = 86
Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/78 (61%), Positives = 61/78 (78%), Gaps = 1/78 (1%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTR 72
KV VQPIN+IFR LQ ++RV +WLY+NV+ RIEG I+GFDE+MN+ L AEE +K +
Sbjct: 6 KVSVQPINIIFRHLQQQTRVSLWLYDNVDFRIEGKIIGFDEFMNVTLADAEEVWLKKDHK 65
Query: 73 KA-LGTIMLKGDNITLIQ 89
+ LG I+LKGDNITLIQ
Sbjct: 66 RVELGRILLKGDNITLIQ 83
>gi|412985477|emb|CCO18923.1| small nuclear ribonucleoprotein E [Bathycoccus prasinos]
Length = 91
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 65/86 (75%), Gaps = 4/86 (4%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENV--NLRIEGHILGFDEYMNIVLESAEE 64
MA KVQ++M QPINLIFRFLQ +SRVQIWLYE+ +EG I+GFDEYMN+VL+ EE
Sbjct: 1 MATKVQRIMTQPINLIFRFLQTKSRVQIWLYEHAANGDVLEGQIVGFDEYMNLVLDDCEE 60
Query: 65 YNI--KSKTRKALGTIMLKGDNITLI 88
+K R ++G ++LKGD++T++
Sbjct: 61 VKRVGGAKQRTSVGRVLLKGDSVTMM 86
>gi|268637717|ref|XP_002649120.1| small nuclear ribonucleoprotein E [Dictyostelium discoideum AX4]
gi|256012871|gb|EEU04068.1| small nuclear ribonucleoprotein E [Dictyostelium discoideum AX4]
Length = 92
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 63/77 (81%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
+ VM++PI LIF+FL ++ VQI L+EN ++RI+G I+G DEYMN+VL++A E +IK KT
Sbjct: 7 KSVMIKPITLIFKFLTQKTEVQIMLFENTDIRIQGVIIGLDEYMNLVLDNASELSIKKKT 66
Query: 72 RKALGTIMLKGDNITLI 88
+K LG I+LKGDNI+L+
Sbjct: 67 KKPLGQILLKGDNISLV 83
>gi|432108661|gb|ELK33362.1| Small nuclear ribonucleoprotein E [Myotis davidii]
Length = 80
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/63 (71%), Positives = 55/63 (87%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDE+MN+VL+ A E +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEFMNLVLDDAGEIHS 66
Query: 68 KSK 70
K+K
Sbjct: 67 KTK 69
>gi|353227274|emb|CCA77787.1| probable small nuclear ribonucleoprotein E [Piriformospora indica
DSM 11827]
Length = 87
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEE-Y 65
M+ + +VMVQPIN+IF+ LQ +++V IWLY+NV +RIEG I+GFDEYMN+V++ A E Y
Sbjct: 1 MSGRQTRVMVQPINVIFKHLQQKTKVVIWLYDNVEMRIEGRIIGFDEYMNVVMDDATEVY 60
Query: 66 NIKSKTRKALGTIMLKGDNITLIQ 89
+ + LG I+LKG+NITLIQ
Sbjct: 61 TKEGRPSVPLGRILLKGENITLIQ 84
>gi|58271500|ref|XP_572906.1| small nuclear ribonucleoprotein E [Cryptococcus neoformans var.
neoformans JEC21]
gi|134115058|ref|XP_773827.1| hypothetical protein CNBH2790 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256455|gb|EAL19180.1| hypothetical protein CNBH2790 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229165|gb|AAW45599.1| small nuclear ribonucleoprotein E, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 92
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 64/85 (75%), Gaps = 7/85 (8%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEE-YNIKSK 70
+KVMVQPIN+IF LQ +RV IWLY+N + RIE +I+GFDE+MN+VL+ AEE Y+ +K
Sbjct: 4 RKVMVQPINIIFSHLQKHNRVAIWLYDNNDFRIEAYIIGFDEFMNVVLDDAEEVYDCGAK 63
Query: 71 ------TRKALGTIMLKGDNITLIQ 89
R+ LG I+LKGDNITLIQ
Sbjct: 64 PGKEVPPRRELGRILLKGDNITLIQ 88
>gi|405122118|gb|AFR96885.1| small nuclear ribonucleoprotein E [Cryptococcus neoformans var.
grubii H99]
Length = 92
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 64/85 (75%), Gaps = 7/85 (8%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEE-YNIKSK 70
+KVMVQPIN+IF LQ +RV +WLY+N + RIE +I+GFDE+MN+VL+ AEE Y+ +K
Sbjct: 4 RKVMVQPINIIFSHLQKHNRVAVWLYDNNDFRIEAYIIGFDEFMNVVLDDAEEVYDCGAK 63
Query: 71 ------TRKALGTIMLKGDNITLIQ 89
R+ LG I+LKGDNITLIQ
Sbjct: 64 PGKEVPPRRELGRILLKGDNITLIQ 88
>gi|406866709|gb|EKD19748.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 95
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 4/85 (4%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
+KV++ PIN IF+ LQ RS VQIWLYE + +RIEG I GFDE+MN+V++ A E +KT
Sbjct: 10 RKVLLPPINFIFKLLQQRSTVQIWLYEQLAIRIEGKIRGFDEFMNLVIDDAVEVKQATKT 69
Query: 72 ----RKALGTIMLKGDNITLIQNLN 92
R+ LG I+LKGDN++LIQ+LN
Sbjct: 70 SAESRRDLGQILLKGDNVSLIQSLN 94
>gi|116780366|gb|ABK21652.1| unknown [Picea sitchensis]
Length = 79
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 61/81 (75%), Gaps = 9/81 (11%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
+VQ++M QPI ++R+QIWL+E +LRIEG I+GFDEYMN+VLE AEE ++K
Sbjct: 5 RVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEISVKR 55
Query: 70 KTRKALGTIMLKGDNITLIQN 90
KT K LG I+LKGDNITL+ N
Sbjct: 56 KTHKPLGRILLKGDNITLMMN 76
>gi|71027525|ref|XP_763406.1| small nuclear ribonucleoprotein [Theileria parva strain Muguga]
gi|85000711|ref|XP_955074.1| small nuclear ribonucleoprotein (E) [Theileria annulata strain
Ankara]
gi|65303220|emb|CAI75598.1| small nuclear ribonucleoprotein (E), putative [Theileria
annulata]
gi|68350359|gb|EAN31123.1| small nuclear ribonucleoprotein, putative [Theileria parva]
Length = 91
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 60/79 (75%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K+QK+M QPIN IFRF +RVQIWL++ N +IEG I GFDEYMN+VL++A E ++K
Sbjct: 7 KLQKIMTQPINQIFRFFTGGTRVQIWLFDQPNTKIEGTIRGFDEYMNMVLDNATEVHVKK 66
Query: 70 KTRKALGTIMLKGDNITLI 88
+K +G I+LKGD +TLI
Sbjct: 67 NVKKDVGRILLKGDCMTLI 85
>gi|388853510|emb|CCF52909.1| probable small nuclear ribonucleoprotein E [Ustilago hordei]
Length = 86
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/78 (60%), Positives = 59/78 (75%), Gaps = 1/78 (1%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEE-YNIKSKT 71
KV VQPIN+IFR LQ ++RV +WLY+N++ RIEG I+GFDE+MN+ L AEE + K
Sbjct: 6 KVSVQPINVIFRHLQQQTRVSLWLYDNIDFRIEGKIIGFDEFMNVTLADAEEVWTKKDNK 65
Query: 72 RKALGTIMLKGDNITLIQ 89
LG I+LKGDNITLIQ
Sbjct: 66 HVELGRILLKGDNITLIQ 83
>gi|321262372|ref|XP_003195905.1| small nuclear ribonucleoprotein E [Cryptococcus gattii WM276]
gi|317462379|gb|ADV24118.1| Small nuclear ribonucleoprotein E, putative [Cryptococcus gattii
WM276]
Length = 92
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 63/85 (74%), Gaps = 7/85 (8%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEE-YNIKSK 70
+KVMVQPIN+IF LQ +RV IWLY+N RIE +I+GFDE+MN+VL+ AEE Y+ +K
Sbjct: 4 RKVMVQPINIIFSHLQKHNRVAIWLYDNNEFRIEAYIIGFDEFMNVVLDDAEEVYDCGAK 63
Query: 71 ------TRKALGTIMLKGDNITLIQ 89
R+ LG I+LKGDNITLIQ
Sbjct: 64 PGKEVPPRRELGRILLKGDNITLIQ 88
>gi|60692530|gb|AAX30632.1| SJCHGC06135 protein [Schistosoma japonicum]
gi|226470320|emb|CAX70440.1| Small nuclear ribonucleoprotein E [Schistosoma japonicum]
gi|226485471|emb|CAX75155.1| Small nuclear ribonucleoprotein E [Schistosoma japonicum]
gi|226485473|emb|CAX75156.1| Small nuclear ribonucleoprotein E [Schistosoma japonicum]
gi|226485475|emb|CAX75157.1| Small nuclear ribonucleoprotein E [Schistosoma japonicum]
Length = 89
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 61/83 (73%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
+ K + PI +++ FLQ ++RV++WLYE NLRIEG I+GFDEYMN+VL A E ++KS
Sbjct: 7 RSHKAIQPPIGVVYNFLQKKARVRVWLYEQCNLRIEGVIIGFDEYMNLVLADACERHMKS 66
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
+K LG I+LKG+ ITL+Q N
Sbjct: 67 GAKKPLGRILLKGETITLVQVAN 89
>gi|344299952|gb|EGW30292.1| hypothetical protein SPAPADRAFT_63138 [Spathaspora passalidarum
NRRL Y-27907]
Length = 87
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 63/86 (73%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ K +K + PINLIF+FLQ++S+V IWLYE RI+G I GFDE+MNIV++ A E +
Sbjct: 1 MSSKQKKATLPPINLIFKFLQHQSQVTIWLYEQTQSRIQGKIRGFDEFMNIVIDDAVEIS 60
Query: 67 IKSKTRKALGTIMLKGDNITLIQNLN 92
+ + LG I+LKGDNITLI +L+
Sbjct: 61 TVTGRKDELGRILLKGDNITLISSLD 86
>gi|294659407|ref|XP_461772.2| DEHA2G05192p [Debaryomyces hansenii CBS767]
gi|199433937|emb|CAG90229.2| DEHA2G05192p [Debaryomyces hansenii CBS767]
Length = 90
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 61/81 (75%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
+K M+ PINLIF++LQ +S V IWLYE + RI+G I GFDE+MN+V++ A E N +
Sbjct: 9 KKTMIPPINLIFKYLQQQSPVTIWLYEQTHSRIQGKIRGFDEFMNVVIDDAMEVNTNDGS 68
Query: 72 RKALGTIMLKGDNITLIQNLN 92
++ LG I+LKGDNITLI +L+
Sbjct: 69 KEELGRILLKGDNITLISSLD 89
>gi|430813791|emb|CCJ28894.1| unnamed protein product [Pneumocystis jirovecii]
Length = 92
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/89 (53%), Positives = 62/89 (69%), Gaps = 1/89 (1%)
Query: 1 MSGGFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLE 60
MSG + K QKVM+ PIN IF+ LQ + V IWLYE ++IEG I GFDE+MN+V++
Sbjct: 1 MSGRTQSGTK-QKVMIPPINFIFKLLQQHTTVCIWLYEQTEMKIEGKIRGFDEFMNLVID 59
Query: 61 SAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
A E K + ++LG I+LKGDNITLIQ
Sbjct: 60 EAVEIGQKKNSSRSLGRILLKGDNITLIQ 88
>gi|146182714|ref|XP_001471048.1| Small nuclear ribonucleoprotein E, putative [Tetrahymena
thermophila]
gi|146143746|gb|EDK31351.1| Small nuclear ribonucleoprotein E, putative [Tetrahymena
thermophila SB210]
Length = 140
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 62/85 (72%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ K K + P+ IF FLQ + RVQIWL+EN +++EG I+GFDEYMN+VL+ E +
Sbjct: 1 MSKKQTKTITNPLTTIFGFLQKQVRVQIWLFENTEIKLEGKIIGFDEYMNMVLDETSEVD 60
Query: 67 IKSKTRKALGTIMLKGDNITLIQNL 91
K+ ++ +G I+LKG+NITLI+NL
Sbjct: 61 CKTNQKREIGRILLKGENITLIRNL 85
>gi|150865716|ref|XP_001385048.2| hypothetical protein PICST_47366 [Scheffersomyces stipitis CBS
6054]
gi|149386972|gb|ABN67019.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 90
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 61/81 (75%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
+K M+ PINLIF++LQ +S V IWLYE RI+G I GFDE+MNIV++ A E + K +
Sbjct: 9 KKSMLPPINLIFKYLQQQSPVTIWLYEQTQSRIQGKIRGFDEFMNIVIDDAVEISTKDGS 68
Query: 72 RKALGTIMLKGDNITLIQNLN 92
++ LG I+LKGDNITLI +L+
Sbjct: 69 KEELGRILLKGDNITLISSLD 89
>gi|19112516|ref|NP_595724.1| Sm snRNP core protein Sme1 [Schizosaccharomyces pombe 972h-]
gi|74638881|sp|Q9USZ3.1|RUXE_SCHPO RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|6165482|emb|CAB59808.1| Sm snRNP core protein Sme1 [Schizosaccharomyces pombe]
Length = 84
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 63/83 (75%), Gaps = 1/83 (1%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ +VQKVM+ PIN IF+ LQ + V IWL+E ++R++G I GFDE+MNIVL+ A + +
Sbjct: 1 MSGRVQKVMIPPINFIFKLLQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVD 60
Query: 67 IKSKTRKALGTIMLKGDNITLIQ 89
K+ R+ LG I+LKGDNITLIQ
Sbjct: 61 AKNNKRE-LGRILLKGDNITLIQ 82
>gi|340960769|gb|EGS21950.1| small nuclear ribonucleoprotein E-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 98
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 64/90 (71%), Gaps = 5/90 (5%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
AP ++V++ PIN +FR LQ R+ VQIWLYE + +RI G I GFDE+MN+V++ A E +
Sbjct: 6 APAGRRVLLPPINFLFRLLQQRTPVQIWLYEQLAIRITGVIRGFDEFMNLVIDDAVEIKL 65
Query: 68 KSKT-----RKALGTIMLKGDNITLIQNLN 92
KT ++ LG I+LKGDNI+LIQ L+
Sbjct: 66 SPKTNEPESKRPLGQILLKGDNISLIQALS 95
>gi|213407688|ref|XP_002174615.1| Sm snRNP core protein Sme1 [Schizosaccharomyces japonicus yFS275]
gi|212002662|gb|EEB08322.1| Sm snRNP core protein Sme1 [Schizosaccharomyces japonicus yFS275]
Length = 84
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 63/83 (75%), Gaps = 1/83 (1%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ +VQKVM+ PIN IF+ LQ + VQIWLYE R+EG I GFDE+MNIVL+ A + +
Sbjct: 1 MSGRVQKVMLPPINFIFKLLQQHTPVQIWLYEQQTHRLEGLIRGFDEFMNIVLDDAVQVD 60
Query: 67 IKSKTRKALGTIMLKGDNITLIQ 89
K++ R ALG I+LKGDNITLI+
Sbjct: 61 DKNRKR-ALGRILLKGDNITLIR 82
>gi|403223071|dbj|BAM41202.1| small nuclear ribonucleoprotein [Theileria orientalis strain
Shintoku]
Length = 94
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 59/79 (74%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K+QK+M QPIN IFRF +RVQIWL+E ++IEG I GFDEYMN+VL+ A+E +K
Sbjct: 10 KLQKIMTQPINQIFRFFTGGTRVQIWLFEQPYMKIEGTIRGFDEYMNMVLDDAQEVYMKK 69
Query: 70 KTRKALGTIMLKGDNITLI 88
+K +G I+LKGD +TLI
Sbjct: 70 NLKKDVGRILLKGDCMTLI 88
>gi|407924103|gb|EKG17161.1| hypothetical protein MPH_05615 [Macrophomina phaseolina MS6]
Length = 95
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 63/85 (74%), Gaps = 4/85 (4%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT- 71
KV++ PIN IF+ LQ R+ V IWL+E V LRIEG I GFDE+MN+V++ A E + +K
Sbjct: 11 KVLLPPINFIFKLLQTRATVSIWLFEQVGLRIEGKIRGFDEFMNLVIDDAIEVKLATKDS 70
Query: 72 ---RKALGTIMLKGDNITLIQNLNP 93
R+ALG I+LKGDN++LIQ+++
Sbjct: 71 EEKRRALGQILLKGDNVSLIQSVDA 95
>gi|448118085|ref|XP_004203416.1| Piso0_001025 [Millerozyma farinosa CBS 7064]
gi|448120526|ref|XP_004203999.1| Piso0_001025 [Millerozyma farinosa CBS 7064]
gi|359384284|emb|CCE78988.1| Piso0_001025 [Millerozyma farinosa CBS 7064]
gi|359384867|emb|CCE78402.1| Piso0_001025 [Millerozyma farinosa CBS 7064]
Length = 90
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 62/81 (76%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
+K M+ PINLIF++LQ +S V IWL+E RI+G I GFDE+MNIV++ A+E + + +
Sbjct: 9 KKPMLPPINLIFKYLQQQSLVTIWLFEQTQSRIQGKIRGFDEFMNIVIDDAKEISTEDGS 68
Query: 72 RKALGTIMLKGDNITLIQNLN 92
+ALG I+LKGDNITLI +L+
Sbjct: 69 SEALGRILLKGDNITLISSLD 89
>gi|71015586|ref|XP_758826.1| hypothetical protein UM02679.1 [Ustilago maydis 521]
gi|46098616|gb|EAK83849.1| hypothetical protein UM02679.1 [Ustilago maydis 521]
Length = 136
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEE-YNIKSK 70
KV VQPIN+IFR LQ ++RV +WLY+NV+ RIEG I+GFDE+MN+ L AEE + K
Sbjct: 5 SKVSVQPINIIFRHLQQQTRVSLWLYDNVDFRIEGKIIGFDEFMNVTLADAEEVWTKKDN 64
Query: 71 TRKALGTIMLKGDNI 85
R LG I+LKGDNI
Sbjct: 65 KRVELGRILLKGDNI 79
>gi|331212255|ref|XP_003307397.1| small nuclear ribonucleoprotein E [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309297800|gb|EFP74391.1| small nuclear ribonucleoprotein E [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 98
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 66/97 (68%), Gaps = 12/97 (12%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ + Q+VMVQPIN+IF+ LQ V IWLY+N R+EG I+GFDE+MN+VL++A E
Sbjct: 1 MSGRQQRVMVQPINVIFKHLQAGQLVHIWLYDNTEFRLEGKIIGFDEFMNVVLDNASEVW 60
Query: 67 IKSK------------TRKALGTIMLKGDNITLIQNL 91
+KSK R +LG ++LKG+NITLI+ L
Sbjct: 61 VKSKKGTPHREAVEKGARVSLGRLLLKGENITLIEAL 97
>gi|303310042|ref|XP_003065034.1| Small nuclear ribonucleoprotein E , putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240104693|gb|EER22889.1| Small nuclear ribonucleoprotein E , putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320033257|gb|EFW15206.1| hypothetical protein CPSG_08394 [Coccidioides posadasii str.
Silveira]
gi|392867032|gb|EAS29780.2| LSM domain-containing protein [Coccidioides immitis RS]
Length = 94
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 65/96 (67%), Gaps = 6/96 (6%)
Query: 1 MSGGFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLE 60
M+G + P K ++QPI+ IF+ LQ RS V IWLYE + +RIEG I GFDE+MN+V++
Sbjct: 1 MAGRGQRGPA--KTLLQPIHFIFKLLQQRSTVSIWLYEQLAVRIEGKIRGFDEFMNLVID 58
Query: 61 SAEEYNIKSK----TRKALGTIMLKGDNITLIQNLN 92
A E + +K R+ LG I+LKGDN++LIQ L
Sbjct: 59 DAVEVRVPTKDQEEQRRQLGQILLKGDNVSLIQALQ 94
>gi|296411223|ref|XP_002835333.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629111|emb|CAZ79490.1| unnamed protein product [Tuber melanosporum]
Length = 93
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 63/82 (76%), Gaps = 4/82 (4%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK--- 70
V++ PIN IF+ LQ+ + VQIWLYE + +RIEG I GFDE+MN+V++ A E +K+K
Sbjct: 12 VLLPPINFIFKLLQSHATVQIWLYEQLAIRIEGKIRGFDEFMNLVIDDAVEVKLKTKDEE 71
Query: 71 -TRKALGTIMLKGDNITLIQNL 91
+R+ LG I+LKGDN++LIQ+L
Sbjct: 72 ESRRELGQILLKGDNVSLIQSL 93
>gi|310798264|gb|EFQ33157.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 96
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 63/84 (75%), Gaps = 5/84 (5%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT-- 71
V++ PIN IF+ LQ S VQIWLYE +++RIEG I GFDE+MN+V++ A E +KT
Sbjct: 12 VLLPPINFIFKLLQQHSTVQIWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVKQVTKTNP 71
Query: 72 ---RKALGTIMLKGDNITLIQNLN 92
R+ALG I+LKGDN++LIQ+L+
Sbjct: 72 EEKRRALGQILLKGDNVSLIQSLS 95
>gi|367053583|ref|XP_003657170.1| hypothetical protein THITE_2122649 [Thielavia terrestris NRRL
8126]
gi|347004435|gb|AEO70834.1| hypothetical protein THITE_2122649 [Thielavia terrestris NRRL
8126]
Length = 90
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 69/92 (75%), Gaps = 3/92 (3%)
Query: 1 MSGGFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLE 60
M+G + A ++V++ PIN +FR LQ RS VQIWLYE +++RI G I GFDE+MN+V++
Sbjct: 1 MTG--RAAGGGRRVLLPPINFLFRLLQQRSTVQIWLYEQLSIRIVGTIRGFDEFMNLVVK 58
Query: 61 SAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
+ N ++TR+ LG I+LKGDN++LIQ+L+
Sbjct: 59 QISKTN-DTETRRPLGQILLKGDNVSLIQSLS 89
>gi|449297252|gb|EMC93270.1| hypothetical protein BAUCODRAFT_76081 [Baudoinia compniacensis
UAMH 10762]
Length = 97
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 61/87 (70%), Gaps = 7/87 (8%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT- 71
KV++ PIN IF+ LQ RS VQIWLYE + +RIEG I GFDE+MN+V++ A E +K
Sbjct: 11 KVLLPPINFIFKLLQQRSTVQIWLYEQLGIRIEGKIRGFDEFMNLVIDEAVEVKQPTKAD 70
Query: 72 ------RKALGTIMLKGDNITLIQNLN 92
R+ LG I+LKGDN+ LIQ+L+
Sbjct: 71 PEPENPRRELGQILLKGDNVCLIQSLS 97
>gi|340518388|gb|EGR48629.1| predicted protein [Trichoderma reesei QM6a]
Length = 96
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 63/84 (75%), Gaps = 5/84 (5%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK--- 70
V++ PIN+IF+ LQN + V +WLYE +++RIEG I GFDE+MN+V++ A E +K
Sbjct: 12 VLLPPINMIFKLLQNNATVSVWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVKQITKTND 71
Query: 71 --TRKALGTIMLKGDNITLIQNLN 92
TRK LG I+LKGDN++LIQNL+
Sbjct: 72 KETRKPLGQILLKGDNVSLIQNLS 95
>gi|346474106|gb|AEO36897.1| hypothetical protein [Amblyomma maculatum]
Length = 78
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 53/62 (85%)
Query: 27 QNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNIT 86
+ R+R+Q+WLYENV LRIEGHI+GFDEYMN+VL+ AEE KSK RK +G I+LKG+NI+
Sbjct: 11 RQRARIQVWLYENVALRIEGHIIGFDEYMNLVLDDAEEIYTKSKQRKQVGRILLKGENIS 70
Query: 87 LI 88
LI
Sbjct: 71 LI 72
>gi|396458899|ref|XP_003834062.1| similar to small nuclear ribonucleoprotein E [Leptosphaeria
maculans JN3]
gi|312210611|emb|CBX90697.1| similar to small nuclear ribonucleoprotein E [Leptosphaeria
maculans JN3]
Length = 94
Score = 94.0 bits (232), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 62/84 (73%), Gaps = 4/84 (4%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT- 71
KV++ PIN IF+ LQ+R+ + +WLYEN+ LRIEG + GFDE+MN+V++ A E + K
Sbjct: 11 KVLLPPINFIFKLLQSRATISVWLYENLGLRIEGKLRGFDEFMNLVIDDAVEVTLAKKDA 70
Query: 72 ---RKALGTIMLKGDNITLIQNLN 92
R+ +G I+LKGDNI+LIQ L+
Sbjct: 71 PEERRKVGQILLKGDNISLIQQLS 94
>gi|261204379|ref|XP_002629403.1| small nuclear ribonucleoprotein E [Ajellomyces dermatitidis
SLH14081]
gi|239587188|gb|EEQ69831.1| small nuclear ribonucleoprotein E [Ajellomyces dermatitidis
SLH14081]
gi|239614272|gb|EEQ91259.1| small nuclear ribonucleoprotein E [Ajellomyces dermatitidis ER-3]
gi|327356357|gb|EGE85214.1| small nuclear ribonucleoprotein E [Ajellomyces dermatitidis ATCC
18188]
Length = 94
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 61/85 (71%), Gaps = 4/85 (4%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
+K ++ PI+ IF+ LQ RS V IWLYE + +RIEG I GFDE+MN+V++ A E + +KT
Sbjct: 10 RKTLLAPIHFIFKLLQQRSTVSIWLYEQLAIRIEGKIRGFDEFMNLVVDDAVEVRLATKT 69
Query: 72 ----RKALGTIMLKGDNITLIQNLN 92
R+ LG I+LKGDN++LIQ L
Sbjct: 70 EEEKRRQLGQILLKGDNVSLIQALQ 94
>gi|358383788|gb|EHK21450.1| hypothetical protein TRIVIDRAFT_91240 [Trichoderma virens Gv29-8]
Length = 96
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 63/84 (75%), Gaps = 5/84 (5%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK--- 70
V++ PIN+IF+ LQN + V +WLYE +++RIEG I GFDE+MN+V++ A E +K
Sbjct: 12 VLLPPINMIFKLLQNNATVSVWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVKQITKTND 71
Query: 71 --TRKALGTIMLKGDNITLIQNLN 92
TRK LG I+LKGDN++LIQNL+
Sbjct: 72 KETRKPLGQILLKGDNVSLIQNLS 95
>gi|392574635|gb|EIW67771.1| hypothetical protein TREMEDRAFT_69713 [Tremella mesenterica DSM
1558]
Length = 93
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 61/85 (71%), Gaps = 7/85 (8%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEE-YNIKS- 69
+KV VQPIN+IF LQ +R+ IWLY++ RIE I+GFDE+MN+VL+ AEE Y+ +
Sbjct: 4 RKVAVQPINVIFSHLQKHTRITIWLYDSNEFRIEAFIVGFDEFMNLVLDEAEEVYDCAAK 63
Query: 70 -----KTRKALGTIMLKGDNITLIQ 89
K R+ LG I+LKGDNITLIQ
Sbjct: 64 PGKPVKPRRELGRILLKGDNITLIQ 88
>gi|156045543|ref|XP_001589327.1| hypothetical protein SS1G_09962 [Sclerotinia sclerotiorum 1980]
gi|154694355|gb|EDN94093.1| hypothetical protein SS1G_09962 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 94
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 62/83 (74%), Gaps = 4/83 (4%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEE----YNI 67
+KV++ PIN IF+ LQ + V IWLYE + +RIEG I GFDE+MN+VL+ A E
Sbjct: 9 RKVLLPPINFIFKLLQQHTPVSIWLYEQLGIRIEGKIRGFDEFMNLVLDDAVEVKQATKD 68
Query: 68 KSKTRKALGTIMLKGDNITLIQN 90
K+++R+ALG I+LKGDN++LIQ+
Sbjct: 69 KAESRRALGQILLKGDNVSLIQS 91
>gi|358399324|gb|EHK48667.1| hypothetical protein TRIATDRAFT_298071 [Trichoderma atroviride
IMI 206040]
Length = 96
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 63/84 (75%), Gaps = 5/84 (5%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT-- 71
V++ PIN+IF+ LQ+ + V +WLYE +++RIEG I GFDE+MN+V++ A E +KT
Sbjct: 12 VLLPPINMIFKLLQSNATVSVWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVKQITKTND 71
Query: 72 ---RKALGTIMLKGDNITLIQNLN 92
RK LG I+LKGDN++LIQNL+
Sbjct: 72 KESRKPLGQILLKGDNVSLIQNLS 95
>gi|296817973|ref|XP_002849323.1| LSM domain-containing protein [Arthroderma otae CBS 113480]
gi|238839776|gb|EEQ29438.1| LSM domain-containing protein [Arthroderma otae CBS 113480]
Length = 95
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 60/85 (70%), Gaps = 4/85 (4%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT- 71
K ++ PI+ IF+ LQ R+ V IWLYE + +RIEG I GFDE+MN+V++ A E + +KT
Sbjct: 11 KTLLAPIHFIFKLLQQRATVSIWLYEQLAVRIEGKIRGFDEFMNLVVDDAVEVTLATKTE 70
Query: 72 ---RKALGTIMLKGDNITLIQNLNP 93
R+ LG I+LKGDN++LIQ +
Sbjct: 71 AESRRQLGQILLKGDNVSLIQTVQS 95
>gi|302422556|ref|XP_003009108.1| small nuclear ribonucleoprotein E [Verticillium albo-atrum
VaMs.102]
gi|261352254|gb|EEY14682.1| small nuclear ribonucleoprotein E [Verticillium albo-atrum
VaMs.102]
gi|346970265|gb|EGY13717.1| LSM domain-containing protein [Verticillium dahliae VdLs.17]
Length = 94
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 64/83 (77%), Gaps = 5/83 (6%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI-----K 68
V++ PIN IF+ LQ ++ VQ+WLYE +++RIEG I GFDE+MN+V+++A E K
Sbjct: 12 VLLPPINFIFKLLQQQATVQVWLYEQLSIRIEGKIRGFDEFMNLVIDNAVEVKQITKTNK 71
Query: 69 SKTRKALGTIMLKGDNITLIQNL 91
+TR++LG I+LKGDN++LIQ+L
Sbjct: 72 EETRRSLGQILLKGDNVSLIQSL 94
>gi|169620926|ref|XP_001803874.1| hypothetical protein SNOG_13667 [Phaeosphaeria nodorum SN15]
gi|111057994|gb|EAT79114.1| hypothetical protein SNOG_13667 [Phaeosphaeria nodorum SN15]
Length = 97
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 64/85 (75%), Gaps = 6/85 (7%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY---NIKS 69
KV++ PIN IF+ LQ+R+ + +WLYEN+ +RIEG + GFDE+MN+V++ A E N K
Sbjct: 12 KVLLPPINFIFKLLQSRATISVWLYENLGMRIEGKLRGFDEFMNLVIDDAVEVTLANAKK 71
Query: 70 KT---RKALGTIMLKGDNITLIQNL 91
+T R+++G I+LKGDNI+LIQ L
Sbjct: 72 ETPEERRSIGQILLKGDNISLIQQL 96
>gi|344289176|ref|XP_003416321.1| PREDICTED: LOW QUALITY PROTEIN: small nuclear ribonucleoprotein
E-like [Loxodonta africana]
Length = 124
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLE-SAEEYN 66
+ K+QKV++QP LI R+LQ+ S +Q+WL E VN+R+E ++ FDE MN+ E AEE +
Sbjct: 18 SQKMQKVIMQPTTLICRYLQSGSWIQVWLQEQVNIRVEDCVIXFDECMNLGAEDDAEEIH 77
Query: 67 IKSKTRKALGTIMLKGDNITLIQNLN 92
K+ +RK LG IM+KGDNITL+Q+++
Sbjct: 78 SKTTSRKELGWIMIKGDNITLLQSVS 103
>gi|115474803|ref|NP_001060998.1| Os08g0151400 [Oryza sativa Japonica Group]
gi|113622967|dbj|BAF22912.1| Os08g0151400, partial [Oryza sativa Japonica Group]
Length = 64
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 30 SRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
+R+QIWL+E +LRIEG I+GFDEYMN+VL+ AEE N+K TRK+LG I+LKGDNITL+
Sbjct: 1 ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKKDTRKSLGRILLKGDNITLMM 60
Query: 90 N 90
N
Sbjct: 61 N 61
>gi|315041917|ref|XP_003170335.1| LSM domain-containing protein [Arthroderma gypseum CBS 118893]
gi|311345369|gb|EFR04572.1| LSM domain-containing protein [Arthroderma gypseum CBS 118893]
Length = 95
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 60/85 (70%), Gaps = 4/85 (4%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT- 71
K ++ PI+ IF+ LQ R+ V IWLYE + +RIEG I GFDE+MN+V++ A E + +KT
Sbjct: 11 KTLLAPIHFIFKLLQQRTTVSIWLYEQLAVRIEGKIRGFDEFMNLVVDDAVEVKLATKTE 70
Query: 72 ---RKALGTIMLKGDNITLIQNLNP 93
R+ LG I+LKGDN++LIQ +
Sbjct: 71 AESRRQLGQILLKGDNVSLIQTVQS 95
>gi|115399850|ref|XP_001215514.1| small nuclear ribonucleoprotein E [Aspergillus terreus NIH2624]
gi|114191180|gb|EAU32880.1| small nuclear ribonucleoprotein E [Aspergillus terreus NIH2624]
Length = 94
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 60/86 (69%), Gaps = 4/86 (4%)
Query: 11 VQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK 70
+K ++ PI+ IF+ LQ RS V IWLYE + RIEG I GFDE+MN+V++ A E + +K
Sbjct: 9 ARKTLLAPIHFIFKLLQQRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVVDDAVEVRMATK 68
Query: 71 T----RKALGTIMLKGDNITLIQNLN 92
T R+ LG I+LKGDN++LIQ +
Sbjct: 69 TDEEKRRPLGQILLKGDNVSLIQAVQ 94
>gi|451995795|gb|EMD88263.1| hypothetical protein COCHEDRAFT_15041 [Cochliobolus
heterostrophus C5]
Length = 92
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 61/83 (73%), Gaps = 4/83 (4%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT- 71
KV++ PIN IF+ LQ+R+ + +WLYEN+ +RIEG + GFDE+MN+V++ A E + K
Sbjct: 9 KVLLPPINFIFKLLQSRATISVWLYENLGMRIEGKLRGFDEFMNLVIDDAIEVTLAKKDA 68
Query: 72 ---RKALGTIMLKGDNITLIQNL 91
R+ +G I+LKGDNI+LIQ L
Sbjct: 69 PEERRKVGQILLKGDNISLIQQL 91
>gi|347838352|emb|CCD52924.1| similar to small nuclear ribonucleoprotein e [Botryotinia
fuckeliana]
Length = 94
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 61/83 (73%), Gaps = 4/83 (4%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK- 70
+KV++ PIN IF+ LQ + V IWLYE + +RIEG I GFDE+MN+VL+ A E +K
Sbjct: 9 RKVLLPPINFIFKLLQQHTPVSIWLYEQLGIRIEGKIRGFDEFMNLVLDDAVEVRQATKD 68
Query: 71 ---TRKALGTIMLKGDNITLIQN 90
+R+ALG I+LKGDN++LIQ+
Sbjct: 69 KEESRRALGQILLKGDNVSLIQS 91
>gi|238482745|ref|XP_002372611.1| small nuclear ribonucleoprotein SmE, putative [Aspergillus flavus
NRRL3357]
gi|220700661|gb|EED56999.1| small nuclear ribonucleoprotein SmE, putative [Aspergillus flavus
NRRL3357]
Length = 95
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 59/84 (70%), Gaps = 4/84 (4%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT- 71
K ++ PI+ IF+ LQ RS V IWLYE + RIEG I GFDE+MN+V++ A E + +KT
Sbjct: 12 KTLLAPIHFIFKLLQQRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVVDDAVEVRLATKTE 71
Query: 72 ---RKALGTIMLKGDNITLIQNLN 92
R+ LG I+LKGDN++LIQ +
Sbjct: 72 EEKRRPLGQILLKGDNVSLIQAVQ 95
>gi|317139460|ref|XP_003189167.1| small nuclear ribonucleoprotein E [Aspergillus oryzae RIB40]
Length = 95
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 59/84 (70%), Gaps = 4/84 (4%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT- 71
K ++ PI+ IF+ LQ RS V IWLYE + RIEG I GFDE+MN+V++ A E + +KT
Sbjct: 12 KTLLAPIHFIFKLLQQRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVVDDAVEVRLATKTG 71
Query: 72 ---RKALGTIMLKGDNITLIQNLN 92
R+ LG I+LKGDN++LIQ +
Sbjct: 72 EEKRRPLGQILLKGDNVSLIQAVQ 95
>gi|189210563|ref|XP_001941613.1| small nuclear ribonucleoprotein E [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330923223|ref|XP_003300153.1| hypothetical protein PTT_11315 [Pyrenophora teres f. teres 0-1]
gi|187977706|gb|EDU44332.1| small nuclear ribonucleoprotein E [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311325858|gb|EFQ91754.1| hypothetical protein PTT_11315 [Pyrenophora teres f. teres 0-1]
Length = 93
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 61/83 (73%), Gaps = 4/83 (4%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT- 71
KV++ PIN IF+ LQ+R+ + +WLYEN+ +RIEG + GFDE+MN+V++ A E + K
Sbjct: 11 KVLLPPINFIFKLLQSRATISVWLYENLGMRIEGKLRGFDEFMNLVIDDAIEVKLAKKDA 70
Query: 72 ---RKALGTIMLKGDNITLIQNL 91
R+ +G I+LKGDNI+LIQ L
Sbjct: 71 PEERRKVGQILLKGDNISLIQQL 93
>gi|378727606|gb|EHY54065.1| small nuclear ribonucleoprotein E [Exophiala dermatitidis
NIH/UT8656]
Length = 94
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 61/85 (71%), Gaps = 4/85 (4%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
+K ++ PI+ IF LQ RS V IWLYEN+ RIEG I GFDE+MN+V++ A E + ++
Sbjct: 10 RKTLLAPIHFIFSLLQKRSTVSIWLYENLRTRIEGKIRGFDEFMNLVIDDAVEVQLATRD 69
Query: 72 ----RKALGTIMLKGDNITLIQNLN 92
R+ LG I+LKGDN++LIQ+L+
Sbjct: 70 SPEKRRQLGQILLKGDNVSLIQSLS 94
>gi|346324729|gb|EGX94326.1| small nuclear ribonucleoprotein E [Cordyceps militaris CM01]
Length = 141
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 61/84 (72%), Gaps = 5/84 (5%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT-- 71
V++ PIN+IF+ LQ S V +WLYE + +RIEG I GFDE+MN+VL+ A E +KT
Sbjct: 57 VLLPPINMIFKLLQTNSTVSVWLYEQLGIRIEGKIRGFDEFMNLVLDDAVEVRQITKTND 116
Query: 72 ---RKALGTIMLKGDNITLIQNLN 92
R+ LG I+LKGDN++LIQNL+
Sbjct: 117 KESRRPLGQILLKGDNVSLIQNLS 140
>gi|327298737|ref|XP_003234062.1| small nuclear ribonucleoprotein E [Trichophyton rubrum CBS
118892]
gi|326464240|gb|EGD89693.1| small nuclear ribonucleoprotein E [Trichophyton rubrum CBS
118892]
gi|326472547|gb|EGD96556.1| small nuclear ribonucleoprotein SmE [Trichophyton tonsurans CBS
112818]
gi|326484188|gb|EGE08198.1| small nuclear ribonucleoprotein SmE [Trichophyton equinum CBS
127.97]
Length = 95
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 60/85 (70%), Gaps = 4/85 (4%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT- 71
K ++ PI+ IF+ LQ R+ V IWLYE + +RIEG I GFDE+MN+V++ A E + +KT
Sbjct: 11 KTLLAPIHFIFKLLQQRTTVSIWLYEQLAVRIEGKIRGFDEFMNLVVDDAVEVKLATKTE 70
Query: 72 ---RKALGTIMLKGDNITLIQNLNP 93
R+ LG I+LKGDN++LIQ +
Sbjct: 71 EESRRQLGQILLKGDNVSLIQTVQS 95
>gi|45478130|gb|AAS66236.1| LRRGT00145 [Rattus norvegicus]
Length = 428
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 49/85 (57%), Positives = 61/85 (71%), Gaps = 8/85 (9%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQ+ SR+Q+WL E V+ +IEG I+GFDEYMN+V + AEE I S
Sbjct: 9 KVQKVMVQPINLIFRYLQSGSRIQVWLCEQVDAQIEGCIIGFDEYMNLVSDDAEE--IHS 66
Query: 70 KTRKALGTIMLKGDNITLIQNLNPD 94
KT G + K ++LI PD
Sbjct: 67 KTN---GPLKFK---VSLIHRQAPD 85
>gi|149235887|ref|XP_001523821.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452197|gb|EDK46453.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 86
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 62/85 (72%), Gaps = 2/85 (2%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ ++K + PINLIF+FLQ +S V IWLYE ++ RI+G ILGFDE+MN+V++ AEE +
Sbjct: 3 SQSLKKSNLPPINLIFKFLQQQSLVTIWLYEQIDYRIQGKILGFDEFMNLVVDEAEE--L 60
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
R LG ++LKGD ITLI +L+
Sbjct: 61 ADGKRTKLGRLLLKGDTITLISSLD 85
>gi|255943851|ref|XP_002562693.1| Pc20g01340 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587428|emb|CAP85463.1| Pc20g01340 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 100
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 58/82 (70%), Gaps = 4/82 (4%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
+K ++ PI+ IF LQ RS V IWLYE + RIEG I GFDE+MN+V++ A E + +KT
Sbjct: 17 RKTLLAPIHFIFSLLQKRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVIDDAVEVRLATKT 76
Query: 72 ----RKALGTIMLKGDNITLIQ 89
R+ LG I+LKGDN++LIQ
Sbjct: 77 EEEKRRPLGQILLKGDNVSLIQ 98
>gi|259480327|tpe|CBF71356.1| TPA: small nuclear ribonucleoprotein SmE, putative
(AFU_orthologue; AFUA_7G05980) [Aspergillus nidulans
FGSC A4]
Length = 94
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 60/86 (69%), Gaps = 4/86 (4%)
Query: 11 VQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK 70
+K ++ PI+ IF+ LQ RS V IWLYE + RIEG I GFDE+MN+V++ A E + +K
Sbjct: 9 ARKTLLAPIHFIFKLLQQRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVIDDAVEVRLATK 68
Query: 71 T----RKALGTIMLKGDNITLIQNLN 92
+ R+ LG I+LKGDN++LIQ +
Sbjct: 69 SEEEKRRPLGQILLKGDNVSLIQAVQ 94
>gi|225679918|gb|EEH18202.1| hypothetical protein PABG_00765 [Paracoccidioides brasiliensis
Pb03]
gi|226291688|gb|EEH47116.1| hypothetical protein PADG_03214 [Paracoccidioides brasiliensis
Pb18]
Length = 94
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 60/84 (71%), Gaps = 4/84 (4%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT- 71
K ++ PI+ IF+ LQ RS V IWLYE + +RIEG I GFDE+MN+V++ A E + +KT
Sbjct: 11 KTLLAPIHFIFKLLQQRSVVSIWLYEQLAIRIEGKIRGFDEFMNLVVDDAVEVRLATKTE 70
Query: 72 ---RKALGTIMLKGDNITLIQNLN 92
++ LG I+LKGDN++LIQ L
Sbjct: 71 EERKRQLGQILLKGDNVSLIQALQ 94
>gi|322696736|gb|EFY88524.1| LSM domain-containing protein [Metarhizium acridum CQMa 102]
Length = 96
Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 64/84 (76%), Gaps = 5/84 (5%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK--- 70
V++ PIN+IF+ LQ+ + V +WLYE +++RIEG I GFDE+MN+V++ A E + +K
Sbjct: 12 VLLPPINMIFKLLQSNATVSVWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVSQVTKTND 71
Query: 71 --TRKALGTIMLKGDNITLIQNLN 92
TRK LG I+LKGDN++LIQ+L+
Sbjct: 72 KETRKQLGQILLKGDNVSLIQSLS 95
>gi|453085619|gb|EMF13662.1| LSM-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 99
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 63/98 (64%), Gaps = 9/98 (9%)
Query: 4 GFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
G + +KV++ PIN IF+ LQ S VQIWLYE + +RIEG I GFDE+MN+V++ A
Sbjct: 2 GDRRGGGQRKVLLPPINFIFKLLQQHSTVQIWLYEQLGIRIEGKIRGFDEFMNLVIDDAV 61
Query: 64 EYNIKSK---------TRKALGTIMLKGDNITLIQNLN 92
E +K R+ LG I+LKGDN+ LIQ+L+
Sbjct: 62 EVQQSAKGETNEDSKEGRRELGQILLKGDNVCLIQSLS 99
>gi|70986850|ref|XP_748912.1| small nuclear ribonucleoprotein SmE [Aspergillus fumigatus Af293]
gi|66846542|gb|EAL86874.1| small nuclear ribonucleoprotein SmE, putative [Aspergillus
fumigatus Af293]
gi|159123319|gb|EDP48439.1| small nuclear ribonucleoprotein SmE, putative [Aspergillus
fumigatus A1163]
Length = 95
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 59/84 (70%), Gaps = 4/84 (4%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT- 71
K ++ PI+ IF+ LQ R+ V IWLYE + RIEG I GFDE+MN+V++ A E + +KT
Sbjct: 12 KTLLAPIHFIFKLLQQRTTVSIWLYEQLAFRIEGKIRGFDEFMNLVIDDAVEVKMATKTD 71
Query: 72 ---RKALGTIMLKGDNITLIQNLN 92
R+ LG I+LKGDN++LIQ +
Sbjct: 72 EEKRRPLGQILLKGDNVSLIQAVQ 95
>gi|295667135|ref|XP_002794117.1| hypothetical protein PAAG_03710 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226286223|gb|EEH41789.1| hypothetical protein PAAG_03710 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 155
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 60/84 (71%), Gaps = 4/84 (4%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT- 71
K ++ PI+ IF+ LQ RS V IWLYE + +RIEG I GFDE+MN+V++ A E + +KT
Sbjct: 72 KTLLAPIHFIFKLLQQRSVVSIWLYEQLAIRIEGKIRGFDEFMNLVVDDAVEVRLATKTE 131
Query: 72 ---RKALGTIMLKGDNITLIQNLN 92
++ LG I+LKGDN++LIQ L
Sbjct: 132 EEKKRQLGQILLKGDNVSLIQALQ 155
>gi|400599169|gb|EJP66873.1| small nuclear ribonucleoprotein E [Beauveria bassiana ARSEF 2860]
Length = 95
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 62/84 (73%), Gaps = 5/84 (5%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK--- 70
V++ PIN+IF+ LQ+ + V +WLYE + +R+EG I GFDE+MN+VL+ A E +K
Sbjct: 11 VLLPPINMIFKLLQSNATVSVWLYEQLGIRVEGKIRGFDEFMNLVLDDAVEVRQITKTND 70
Query: 71 --TRKALGTIMLKGDNITLIQNLN 92
TR+ LG I+LKGDN++LIQNL+
Sbjct: 71 KETRRPLGQILLKGDNVSLIQNLS 94
>gi|119483034|ref|XP_001261545.1| LSM domain protein [Neosartorya fischeri NRRL 181]
gi|119409700|gb|EAW19648.1| LSM domain protein [Neosartorya fischeri NRRL 181]
Length = 95
Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 59/84 (70%), Gaps = 4/84 (4%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT- 71
K ++ PI+ IF+ LQ R+ V IWLYE + RIEG I GFDE+MN+V++ A E + +KT
Sbjct: 12 KTLLAPIHFIFKLLQQRTTVSIWLYEQLAFRIEGKIRGFDEFMNLVIDDAVEVRMATKTD 71
Query: 72 ---RKALGTIMLKGDNITLIQNLN 92
R+ LG I+LKGDN++LIQ +
Sbjct: 72 EEKRRPLGQILLKGDNVSLIQAVQ 95
>gi|255717787|ref|XP_002555174.1| KLTH0G03102p [Lachancea thermotolerans]
gi|238936558|emb|CAR24737.1| KLTH0G03102p [Lachancea thermotolerans CBS 6340]
Length = 94
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 56/89 (62%), Gaps = 7/89 (7%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
MAP KV V PIN IF FLQ ++ V WL+E V RI G I GFDE+MN+V++ A E
Sbjct: 1 MAPNNPKVTVPPINCIFNFLQQQTLVNFWLFEQVQTRIRGRISGFDEFMNVVIDDASEIP 60
Query: 67 IKSKTRK-------ALGTIMLKGDNITLI 88
I +KT LG I+LKGDNITLI
Sbjct: 61 IDTKTGSELPDQAVKLGRILLKGDNITLI 89
>gi|121711637|ref|XP_001273434.1| small nuclear ribonucleoprotein SmE, putative [Aspergillus
clavatus NRRL 1]
gi|119401585|gb|EAW12008.1| small nuclear ribonucleoprotein SmE, putative [Aspergillus
clavatus NRRL 1]
Length = 95
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 59/84 (70%), Gaps = 4/84 (4%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT- 71
K ++ PI+ IF+ LQ R+ V IWLYE + RIEG I GFDE+MN+V++ A E + +KT
Sbjct: 12 KTLLAPIHFIFKLLQQRTTVSIWLYEQLAFRIEGKIRGFDEFMNLVVDDAVEVRMATKTD 71
Query: 72 ---RKALGTIMLKGDNITLIQNLN 92
R+ LG I+LKGDN++LIQ +
Sbjct: 72 EEKRRPLGQILLKGDNVSLIQAVQ 95
>gi|212543921|ref|XP_002152115.1| small nuclear ribonucleoprotein SmE, putative [Talaromyces
marneffei ATCC 18224]
gi|242787996|ref|XP_002481132.1| small nuclear ribonucleoprotein SmE, putative [Talaromyces
stipitatus ATCC 10500]
gi|210067022|gb|EEA21115.1| small nuclear ribonucleoprotein SmE, putative [Talaromyces
marneffei ATCC 18224]
gi|218721279|gb|EED20698.1| small nuclear ribonucleoprotein SmE, putative [Talaromyces
stipitatus ATCC 10500]
Length = 94
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 60/82 (73%), Gaps = 4/82 (4%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
+K ++ PI+ IF+ LQ RS V IWLYE ++ RIEG I GFDE+MN+V++ A E + +K+
Sbjct: 10 RKTLLAPIHFIFKLLQQRSTVSIWLYEQLSFRIEGKIRGFDEFMNLVVDDAVEVRLATKS 69
Query: 72 ----RKALGTIMLKGDNITLIQ 89
R+ LG I+LKGDN++LIQ
Sbjct: 70 EEEKRRNLGQILLKGDNVSLIQ 91
>gi|145237192|ref|XP_001391243.1| small nuclear ribonucleoprotein E [Aspergillus niger CBS 513.88]
gi|134075709|emb|CAK96601.1| unnamed protein product [Aspergillus niger]
gi|350635406|gb|EHA23767.1| hypothetical protein ASPNIDRAFT_40173 [Aspergillus niger ATCC
1015]
gi|358369432|dbj|GAA86046.1| small nuclear ribonucleoprotein SmE [Aspergillus kawachii IFO
4308]
Length = 95
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 59/84 (70%), Gaps = 4/84 (4%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT- 71
K ++ PI+ IF+ LQ RS V IWLYE + RIEG I GFDE+MN+V++ A E + +K+
Sbjct: 12 KTLLAPIHFIFKLLQQRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVIDDAVEVRMATKSE 71
Query: 72 ---RKALGTIMLKGDNITLIQNLN 92
R+ LG I+LKGDN++LIQ +
Sbjct: 72 EEKRRPLGQILLKGDNVSLIQAVQ 95
>gi|425766459|gb|EKV05069.1| Small nuclear ribonucleoprotein SmE, putative [Penicillium
digitatum PHI26]
gi|425781600|gb|EKV19555.1| Small nuclear ribonucleoprotein SmE, putative [Penicillium
digitatum Pd1]
Length = 87
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 60/84 (71%), Gaps = 4/84 (4%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
+K ++ PI+ IF FLQ R V +WLYE + RIEG I GFDE+MN+V+E+A E + +KT
Sbjct: 4 RKTLLAPIHCIFGFLQKRIPVSVWLYEQLAFRIEGTIRGFDEFMNLVIENAVEVRLATKT 63
Query: 72 ----RKALGTIMLKGDNITLIQNL 91
R+ LG I+LKGDN++LIQ +
Sbjct: 64 EEEKRRPLGQILLKGDNVSLIQAM 87
>gi|380479557|emb|CCF42948.1| LSM domain-containing protein [Colletotrichum higginsianum]
Length = 96
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 61/84 (72%), Gaps = 5/84 (5%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT-- 71
V++ PIN IF+ LQ + VQIWLYE +++RIEG I GFDE+MN+V++ A E +KT
Sbjct: 12 VLLPPINFIFKLLQQHTTVQIWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVKQITKTNL 71
Query: 72 ---RKALGTIMLKGDNITLIQNLN 92
R LG I+LKGDN++LIQ+L+
Sbjct: 72 EEKRTPLGQILLKGDNVSLIQSLS 95
>gi|440636915|gb|ELR06834.1| hypothetical protein GMDG_08125 [Geomyces destructans 20631-21]
Length = 98
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 61/84 (72%), Gaps = 5/84 (5%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK--- 70
V++ PIN+IF+ LQ S V IWLYE + +RIEG I GFDE+MN+V++ A E +K
Sbjct: 14 VLLPPINMIFKLLQTNSTVSIWLYEQIAIRIEGKIRGFDEFMNLVIDDAIEVGQITKTNE 73
Query: 71 --TRKALGTIMLKGDNITLIQNLN 92
TR+ LG I+LKGDN++LIQ+L+
Sbjct: 74 TETRRPLGRILLKGDNVSLIQSLS 97
>gi|429850739|gb|ELA25982.1| small nuclear ribonucleoprotein [Colletotrichum gloeosporioides
Nara gc5]
Length = 96
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 59/80 (73%), Gaps = 5/80 (6%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT-----R 72
PIN IFR LQ + VQIWLYE +++RIEG I GFDE+MN+V++ A E +KT R
Sbjct: 16 PINFIFRLLQQHTTVQIWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVKQVTKTNPEESR 75
Query: 73 KALGTIMLKGDNITLIQNLN 92
+ LG I+LKGDN++LIQ+++
Sbjct: 76 RPLGQILLKGDNVSLIQSVS 95
>gi|345568747|gb|EGX51639.1| hypothetical protein AOL_s00054g38 [Arthrobotrys oligospora ATCC
24927]
Length = 98
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 56/79 (70%), Gaps = 4/79 (5%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK--- 70
V++ PIN IF+ LQ + VQIWLYE + RIEG I GFDE+MN+V++ A E + SK
Sbjct: 14 VLLPPINFIFKLLQTHATVQIWLYEQLQTRIEGKIRGFDEFMNLVIDEAVEIKLPSKTED 73
Query: 71 -TRKALGTIMLKGDNITLI 88
TR+ LG I+LKGDN+T I
Sbjct: 74 ETRRELGRILLKGDNVTCI 92
>gi|440297058|gb|ELP89788.1| hypothetical protein EIN_425100 [Entamoeba invadens IP1]
Length = 85
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 57/85 (67%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M + ++ M+ P+ ++N+ +V IWLYEN ++IEG I FD YMNI LE AEE
Sbjct: 1 MDNRAKRAMLAPVRYYADLIRNKQKVTIWLYENTAMKIEGRITAFDTYMNITLEQAEEVY 60
Query: 67 IKSKTRKALGTIMLKGDNITLIQNL 91
+K+ R+++G IMLKGDNI ++Q +
Sbjct: 61 VKTSNRRSIGNIMLKGDNIAVVQKI 85
>gi|344231123|gb|EGV63005.1| LSM-domain-containing protein [Candida tenuis ATCC 10573]
Length = 90
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 54/79 (68%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTR 72
+ M PI+ IF LQ R V +WLYE RIEG I GFDE+MNIVL+ A E + K ++
Sbjct: 10 RAMHTPIHTIFTCLQQRLTVSVWLYEQTQSRIEGKIRGFDEFMNIVLDDAIEVSTKDGSK 69
Query: 73 KALGTIMLKGDNITLIQNL 91
+ LG IMLKGDNITLI +L
Sbjct: 70 EDLGRIMLKGDNITLISSL 88
>gi|398397489|ref|XP_003852202.1| hypothetical protein MYCGRDRAFT_104520 [Zymoseptoria tritici
IPO323]
gi|339472083|gb|EGP87178.1| hypothetical protein MYCGRDRAFT_104520 [Zymoseptoria tritici
IPO323]
Length = 99
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 59/90 (65%), Gaps = 9/90 (10%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK- 70
+KV++ PIN IF+ LQ S VQIWLYE + +RIEG I GFDE+MN+V++ A E K
Sbjct: 10 RKVLLPPINFIFKLLQQHSTVQIWLYEQLGIRIEGKIRGFDEFMNLVIDEAVEVKQPGKG 69
Query: 71 --------TRKALGTIMLKGDNITLIQNLN 92
R+ LG I+LKGDN+ LIQ+L
Sbjct: 70 QTEADVKDQRRELGQILLKGDNVCLIQSLT 99
>gi|209882013|ref|XP_002142444.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209558050|gb|EEA08095.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 91
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
+ QK+M QPIN IFR ++ RVQIWLY++ L +EG I GFDEYMNIVL+ E K
Sbjct: 6 RTQKIMTQPINQIFRLFTSKQRVQIWLYDHPELSLEGKIQGFDEYMNIVLDDVTEVYTKK 65
Query: 70 K--TRKALGTIMLKGDNITLIQN 90
+R+ +G +ML+G+NI+LI +
Sbjct: 66 DEVSRRDIGRLMLRGENISLISD 88
>gi|336270688|ref|XP_003350103.1| hypothetical protein SMAC_00994 [Sordaria macrospora k-hell]
gi|380095497|emb|CCC06970.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 96
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 61/82 (74%), Gaps = 5/82 (6%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT-- 71
V++ PIN +FR LQ S VQIWLYE +++RI G I GFDE+MN+V+++A E + SKT
Sbjct: 12 VLLPPINFLFRLLQQHSTVQIWLYEQLHIRIIGTIRGFDEFMNLVIDNAIEVKLVSKTNE 71
Query: 72 ---RKALGTIMLKGDNITLIQN 90
R+ LG I+LKGDN++LIQ+
Sbjct: 72 KEERRELGQILLKGDNVSLIQS 93
>gi|85107508|ref|XP_962388.1| hypothetical protein NCU06354 [Neurospora crassa OR74A]
gi|28923993|gb|EAA33152.1| predicted protein [Neurospora crassa OR74A]
Length = 96
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 61/82 (74%), Gaps = 5/82 (6%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT-- 71
V++ PIN +FR LQ S VQIWLYE +++RI G I GFDE+MN+V+++A E + SKT
Sbjct: 12 VLLPPINFLFRLLQQHSTVQIWLYEQLHIRIIGTIRGFDEFMNLVIDNAIEVKLVSKTNE 71
Query: 72 ---RKALGTIMLKGDNITLIQN 90
R+ LG I+LKGDN++LIQ+
Sbjct: 72 TEERRELGQILLKGDNVSLIQS 93
>gi|46111729|ref|XP_382922.1| hypothetical protein FG02746.1 [Gibberella zeae PH-1]
gi|408389795|gb|EKJ69221.1| hypothetical protein FPSE_10604 [Fusarium pseudograminearum
CS3096]
Length = 96
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 60/82 (73%), Gaps = 5/82 (6%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT-- 71
V+V PIN IF+ LQ+ + V +WLYE +++RIEG I GFDE+MN+V++ A E +KT
Sbjct: 12 VLVPPINFIFKLLQSHATVSVWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVKQITKTND 71
Query: 72 ---RKALGTIMLKGDNITLIQN 90
R+ LG I+LKGDN++LIQ+
Sbjct: 72 KESRRPLGQILLKGDNVSLIQS 93
>gi|126647281|ref|XP_001388059.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
gi|126117147|gb|EAZ51247.1| small nuclear ribonucleoprotein, putative [Cryptosporidium parvum
Iowa II]
Length = 92
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 60/81 (74%), Gaps = 2/81 (2%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K QK+M+QPIN IF ++ RVQIWLY++ NL +EG I GFDEYMNIVL+ A E K
Sbjct: 8 KTQKMMLQPINQIFHLFTSKQRVQIWLYDHKNLVLEGVIQGFDEYMNIVLDQASEVYTKK 67
Query: 70 KTRK--ALGTIMLKGDNITLI 88
+ R+ ++G ++L+G+NI+LI
Sbjct: 68 EVRRETSVGQLLLRGENISLI 88
>gi|385302463|gb|EIF46594.1| small nuclear ribonucleoprotein e [Dekkera bruxellensis AWRI1499]
Length = 79
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 59/76 (77%), Gaps = 3/76 (3%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN--IKSKTR 72
MV PIN IF++LQ +S+V IWLYE VN+R+ G + GFDE+MN+VL+ A E + +K R
Sbjct: 1 MVPPINQIFKYLQQQSKVTIWLYEQVNVRLTGVLKGFDEFMNVVLDDAVEISQGXSAKQR 60
Query: 73 KALGTIMLKGDNITLI 88
K LGT++LKGDNITLI
Sbjct: 61 K-LGTVLLKGDNITLI 75
>gi|448534499|ref|XP_003870814.1| hypothetical protein CORT_0F04610 [Candida orthopsilosis Co
90-125]
gi|380355169|emb|CCG24686.1| hypothetical protein CORT_0F04610 [Candida orthopsilosis]
Length = 86
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 61/85 (71%), Gaps = 2/85 (2%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ V K + PINLIF+FLQ +S V IWLYE + RI+G I GFDEYMN+V++ AEE I
Sbjct: 3 SKSVSKTNLPPINLIFKFLQQQSLVTIWLYEKSHSRIQGKIQGFDEYMNLVIDEAEE--I 60
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
+ + LG ++LKG+NITLI +L+
Sbjct: 61 VNGKKTPLGKLLLKGENITLISSLD 85
>gi|452980005|gb|EME79767.1| hypothetical protein MYCFIDRAFT_81234 [Pseudocercospora fijiensis
CIRAD86]
Length = 100
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 60/90 (66%), Gaps = 9/90 (10%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK- 70
+KV++ PIN IF+ LQ S VQIWLYE + +RIEG I GFDE+MN+V++ A E K
Sbjct: 11 RKVLLPPINFIFKLLQQHSTVQIWLYEQLGIRIEGKIRGFDEFMNLVIDDAVEVKQPGKG 70
Query: 71 --------TRKALGTIMLKGDNITLIQNLN 92
R+ +G I+LKGDN+ LIQ+L+
Sbjct: 71 ETEEDVKDQRREVGQILLKGDNVCLIQSLS 100
>gi|50549605|ref|XP_502273.1| YALI0D01155p [Yarrowia lipolytica]
gi|49648141|emb|CAG80459.1| YALI0D01155p [Yarrowia lipolytica CLIB122]
Length = 85
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 59/81 (72%), Gaps = 2/81 (2%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
Q+VM+ PI ++F+FLQ + VQ+WL+E + RI+G ++GFDE+MN+VLE A I
Sbjct: 7 QRVMLVPIKVLFKFLQLHATVQVWLFEQSDTRIQGTLVGFDEFMNVVLEDA--IQICGDK 64
Query: 72 RKALGTIMLKGDNITLIQNLN 92
+ +G IMLKGDNITLI N++
Sbjct: 65 ERKIGKIMLKGDNITLISNMS 85
>gi|302891819|ref|XP_003044791.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256725716|gb|EEU39078.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 96
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 61/84 (72%), Gaps = 5/84 (5%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK--- 70
V++ PIN IF+ LQ+ + V +WLYE +++RIEG I GFDE+MN+V++ A E +K
Sbjct: 12 VLLLPINFIFKLLQSHATVSVWLYEQLSIRIEGKIRGFDEFMNLVIDDAVEVKQITKTND 71
Query: 71 --TRKALGTIMLKGDNITLIQNLN 92
TR+ LG I+LKGDN++LIQ+L
Sbjct: 72 KETRRPLGQILLKGDNVSLIQSLT 95
>gi|145492122|ref|XP_001432059.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145499004|ref|XP_001435488.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399168|emb|CAK64662.1| unnamed protein product [Paramecium tetraurelia]
gi|124402621|emb|CAK68091.1| unnamed protein product [Paramecium tetraurelia]
Length = 95
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 59/82 (71%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K QK + QP++ F +++++IWL EN NLRI+G + GFDEY+N+VL+ A EY+ K+
Sbjct: 9 KPQKKITQPLHAFFTLFTEKTQLEIWLVENDNLRIQGKLAGFDEYLNLVLDRAVEYDRKT 68
Query: 70 KTRKALGTIMLKGDNITLIQNL 91
K K LG I+LKG+NI L++ L
Sbjct: 69 KATKELGKILLKGENIVLVRTL 90
>gi|330802344|ref|XP_003289178.1| hypothetical protein DICPUDRAFT_35231 [Dictyostelium purpureum]
gi|325080754|gb|EGC34296.1| hypothetical protein DICPUDRAFT_35231 [Dictyostelium purpureum]
Length = 77
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 56/68 (82%)
Query: 21 LIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIML 80
LIF+FL ++ VQI LYENV+ RI+G I+G DEYMN+VL++A E+++K KT+K LG I+L
Sbjct: 1 LIFKFLTQKTEVQIMLYENVDTRIQGVIIGLDEYMNLVLDNAFEFSLKKKTKKPLGQILL 60
Query: 81 KGDNITLI 88
KGDNI ++
Sbjct: 61 KGDNILMV 68
>gi|442758563|gb|JAA71440.1| Putative small nuclear ribonucleoprotein e [Ixodes ricinus]
Length = 82
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 59/77 (76%), Gaps = 4/77 (5%)
Query: 15 MVQPINLIFRFLQNRSRVQI---WLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
MVQ INL F+ + NR+R +I LYENV LRIEGHI+GF EYMN+VL+ AEE K+K
Sbjct: 1 MVQTINLYFQ-ISNRTRARIRRFGLYENVILRIEGHIIGFGEYMNLVLDDAEEIYTKTKQ 59
Query: 72 RKALGTIMLKGDNITLI 88
RK +G I+LKG+NITLI
Sbjct: 60 RKQVGRILLKGENITLI 76
>gi|452842154|gb|EME44090.1| hypothetical protein DOTSEDRAFT_130967 [Dothistroma septosporum
NZE10]
Length = 99
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 60/90 (66%), Gaps = 9/90 (10%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK- 70
+KV++ PIN IF+ LQ + VQIWLYE + +RIEG I GFDE+MN+V++ A E +K
Sbjct: 10 RKVLLPPINFIFKLLQQHNTVQIWLYEQLGIRIEGKIRGFDEFMNLVIDDAVEVKQPAKG 69
Query: 71 --------TRKALGTIMLKGDNITLIQNLN 92
R+ LG I+LKGDN+ LIQ+L
Sbjct: 70 QTEEDVKDQRRELGQILLKGDNVCLIQSLT 99
>gi|402079438|gb|EJT74703.1| sm snRNP core protein Sme1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 94
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 59/83 (71%), Gaps = 5/83 (6%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK--- 70
+++ PIN IF+ LQ+ + VQIWLYE + +RIEG I GFDE+MN+VL+ A E +K
Sbjct: 12 ILLPPINFIFKLLQSHAPVQIWLYEQLGIRIEGKIRGFDEFMNLVLDDAVEIKQVTKENP 71
Query: 71 --TRKALGTIMLKGDNITLIQNL 91
R+ LG I+LKGDN++LIQ L
Sbjct: 72 EEKRRPLGQILLKGDNVSLIQAL 94
>gi|398365473|ref|NP_014802.3| Sme1p [Saccharomyces cerevisiae S288c]
gi|2500647|sp|Q12330.1|RUXE_YEAST RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|1293719|gb|AAC49645.1| similar to the mammalian snRNP-E involved in splicing, CAI: 0.12;
snRNPE homolog [Saccharomyces cerevisiae]
gi|1420395|emb|CAA99365.1| SME1 [Saccharomyces cerevisiae]
gi|1694906|emb|CAA63198.1| core snRNP protein E [Saccharomyces cerevisiae]
gi|45269948|gb|AAS56355.1| YOR159C [Saccharomyces cerevisiae]
gi|151945777|gb|EDN64018.1| Sm E [Saccharomyces cerevisiae YJM789]
gi|190407477|gb|EDV10744.1| small nuclear ribonucleoprotein E [Saccharomyces cerevisiae
RM11-1a]
gi|256272778|gb|EEU07749.1| Sme1p [Saccharomyces cerevisiae JAY291]
gi|259149642|emb|CAY86446.1| Sme1p [Saccharomyces cerevisiae EC1118]
gi|285815039|tpg|DAA10932.1| TPA: Sme1p [Saccharomyces cerevisiae S288c]
gi|349581316|dbj|GAA26474.1| K7_Sme1p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296487|gb|EIW07589.1| Sme1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 94
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 63/94 (67%), Gaps = 8/94 (8%)
Query: 7 MAPKVQ-KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY 65
M+ KV+ K MV PIN IF FLQ ++ V IWL+E + +RI+G I+GFDE+MN+V++ A E
Sbjct: 1 MSNKVKTKAMVPPINCIFNFLQQQTPVTIWLFEQIGIRIKGKIVGFDEFMNVVIDEAVEI 60
Query: 66 NIKSKTRK-------ALGTIMLKGDNITLIQNLN 92
+ S K LG I+LKGDNITLI + +
Sbjct: 61 PVNSADGKEDVEKGTPLGKILLKGDNITLITSAD 94
>gi|380800507|gb|AFE72129.1| small nuclear ribonucleoprotein E, partial [Macaca mulatta]
Length = 59
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 51/58 (87%)
Query: 35 WLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
WLYE VN+RIEG I+GFDEYMN+VL+ AEE + K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 1 WLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 58
>gi|67478492|ref|XP_654638.1| small nuclear ribonucleoprotein [Entamoeba histolytica HM-1:IMSS]
gi|56471705|gb|EAL49252.1| small nuclear ribonucleoprotein, putative [Entamoeba histolytica
HM-1:IMSS]
gi|407040392|gb|EKE40106.1| LSM domain containing protein [Entamoeba nuttalli P19]
gi|449708080|gb|EMD47607.1| small nuclear ribonucleoprotein, putative [Entamoeba histolytica
KU27]
Length = 89
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 58/83 (69%)
Query: 9 PKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIK 68
K+ K M+ P+ I +++ RV IWL+EN LRIEG + GFD+Y+N+VL EE +K
Sbjct: 4 TKMTKAMILPVKFIVNLAKHKQRVSIWLFENTALRIEGTLSGFDQYINLVLTDTEEVYLK 63
Query: 69 SKTRKALGTIMLKGDNITLIQNL 91
+ TR+ +GTI+LKG+NI++I +
Sbjct: 64 TNTRRKIGTILLKGENISVISKI 86
>gi|301115033|ref|XP_002999286.1| small nuclear ribonucleoprotein E [Phytophthora infestans T30-4]
gi|262111380|gb|EEY69432.1| small nuclear ribonucleoprotein E [Phytophthora infestans T30-4]
Length = 79
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 53/72 (73%)
Query: 22 IFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLK 81
+F +SR+Q+WLYE VN RIEG I+GFDEYMN+VL+ AEE ++K+ R LG I+LK
Sbjct: 3 LFWLSTQKSRIQVWLYEQVNTRIEGRIMGFDEYMNLVLDDAEELDVKNLKRTPLGRILLK 62
Query: 82 GDNITLIQNLNP 93
GD ITL+ ++
Sbjct: 63 GDTITLMMAVDT 74
>gi|389633501|ref|XP_003714403.1| sm snRNP core protein Sme1 [Magnaporthe oryzae 70-15]
gi|351646736|gb|EHA54596.1| sm snRNP core protein Sme1 [Magnaporthe oryzae 70-15]
Length = 95
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 60/84 (71%), Gaps = 5/84 (5%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT- 71
K+++ PIN IF+ LQ+ + V IWLYE + +RIEG I GFDE+MN+V++ A E +K
Sbjct: 11 KILLPPINCIFKLLQSHATVSIWLYEQLGIRIEGKIRGFDEFMNLVIDDAIEVKQITKDN 70
Query: 72 ----RKALGTIMLKGDNITLIQNL 91
R+ LG I+LKGDN++LIQ+L
Sbjct: 71 TEEKRRPLGQILLKGDNVSLIQSL 94
>gi|366996280|ref|XP_003677903.1| hypothetical protein NCAS_0H02460 [Naumovozyma castellii CBS
4309]
gi|342303773|emb|CCC71556.1| hypothetical protein NCAS_0H02460 [Naumovozyma castellii CBS
4309]
Length = 92
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 56/88 (63%), Gaps = 7/88 (7%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
K MV PIN IF FLQ ++ V WL+E V RI G + GFDE+MN+V++ A E + +KT
Sbjct: 5 SKTMVPPINCIFNFLQQQTTVTFWLFEQVGTRIRGKVSGFDEFMNVVIDDAIEIPVDAKT 64
Query: 72 RK-------ALGTIMLKGDNITLIQNLN 92
K LG I+LKGDNITLI + +
Sbjct: 65 GKELVSKGTKLGRILLKGDNITLITSAD 92
>gi|255727532|ref|XP_002548692.1| small nuclear ribonucleoprotein E [Candida tropicalis MYA-3404]
gi|240134616|gb|EER34171.1| small nuclear ribonucleoprotein E [Candida tropicalis MYA-3404]
Length = 86
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 56/75 (74%), Gaps = 2/75 (2%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
PINLIF+FLQ +S V IWLYE RI+G I GFDE+MNIV++ A E I + ++ LG
Sbjct: 13 PINLIFKFLQQQSLVNIWLYEQTQSRIQGKIRGFDEFMNIVIDDAVE--ICNGNKEELGR 70
Query: 78 IMLKGDNITLIQNLN 92
I+LKGDNITLI +L+
Sbjct: 71 ILLKGDNITLISSLD 85
>gi|241956256|ref|XP_002420848.1| small nuclear ribonucleoprotein E (snRNP-E), putative [Candida
dubliniensis CD36]
gi|223644191|emb|CAX41000.1| small nuclear ribonucleoprotein E (snRNP-E), putative [Candida
dubliniensis CD36]
Length = 86
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 60/85 (70%), Gaps = 2/85 (2%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
+ + ++ + PINLIF+FLQ +S V IWLYE RI+G I GFDE+MNIV++ A E +
Sbjct: 3 SKQTKQTNLPPINLIFKFLQQQSVVTIWLYEQTQSRIQGKIRGFDEFMNIVIDDAVE--L 60
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
+ + LG I+LKGDNITLI +L+
Sbjct: 61 SNGKKSELGRILLKGDNITLISSLD 85
>gi|320589574|gb|EFX02030.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 96
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 60/84 (71%), Gaps = 5/84 (5%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK--- 70
V++ PIN+IF+ LQ+ + V +WLYE ++ RIEG I GFDE++N+VL+ A +K
Sbjct: 12 VLLPPINMIFKLLQSHATVSVWLYEQLSFRIEGKIRGFDEFLNLVLDDAVVVGQITKTQE 71
Query: 71 --TRKALGTIMLKGDNITLIQNLN 92
TRK LG I+LKGDNI+LIQ ++
Sbjct: 72 EETRKPLGRILLKGDNISLIQGVS 95
>gi|348683781|gb|EGZ23596.1| hypothetical protein PHYSODRAFT_486753 [Phytophthora sojae]
Length = 70
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 51/65 (78%)
Query: 29 RSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
+SR+Q+WLYE VN RIEG I+GFDEYMN+VL+ AEE ++K+ R LG I+LKGD ITL+
Sbjct: 1 KSRIQVWLYEQVNTRIEGRIMGFDEYMNLVLDDAEELDVKNLKRTPLGRILLKGDTITLM 60
Query: 89 QNLNP 93
++
Sbjct: 61 MAVDA 65
>gi|365984381|ref|XP_003669023.1| hypothetical protein NDAI_0C01190 [Naumovozyma dairenensis CBS
421]
gi|343767791|emb|CCD23780.1| hypothetical protein NDAI_0C01190 [Naumovozyma dairenensis CBS
421]
Length = 94
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 56/86 (65%), Gaps = 7/86 (8%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
K MV PIN IF +LQ ++ V WLYE V +RI G I GFDE+MN+V++ A E + KT
Sbjct: 7 SKAMVPPINCIFGYLQQQTPVTFWLYEQVGIRITGKISGFDEFMNVVIDDAIEIPVDPKT 66
Query: 72 ---RKA----LGTIMLKGDNITLIQN 90
KA LG IMLKGDNITLI +
Sbjct: 67 GVENKAKGTQLGRIMLKGDNITLITS 92
>gi|342874544|gb|EGU76546.1| hypothetical protein FOXB_12920 [Fusarium oxysporum Fo5176]
gi|388497428|gb|AFK36780.1| unknown [Lotus japonicus]
Length = 96
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 59/84 (70%), Gaps = 5/84 (5%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK--- 70
+M+ PI IF L+ + V IWLYE +++RIEG I GFDE+MN+V++ A E +K
Sbjct: 12 LMLPPIKYIFELLREHATVSIWLYEQLSIRIEGKIRGFDEFMNLVIDEAVEVKQVTKTNE 71
Query: 71 --TRKALGTIMLKGDNITLIQNLN 92
TR+ LG IMLKGDN++LIQN++
Sbjct: 72 KETRRPLGQIMLKGDNVSLIQNVS 95
>gi|167379643|ref|XP_001735222.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165902891|gb|EDR28600.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 84
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 56/79 (70%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTR 72
K M+ P+ I +++ RV IWL+EN LRIEG + GFD+Y+N+VL EE +K+ TR
Sbjct: 3 KAMILPVKFIVNLAKHKQRVSIWLFENTALRIEGTLSGFDQYINLVLTDTEEVYLKTNTR 62
Query: 73 KALGTIMLKGDNITLIQNL 91
+ +GTI+LKG+NI++I +
Sbjct: 63 RKIGTILLKGENISVISKI 81
>gi|363753610|ref|XP_003647021.1| hypothetical protein Ecym_5455 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890657|gb|AET40204.1| hypothetical protein Ecym_5455 [Eremothecium cymbalariae
DBVPG#7215]
Length = 93
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ K QK M+ PIN I+ LQ +S V+ WLY+ +RI+G I GFDE+MN+V++ A E
Sbjct: 1 MSGKQQKTMMPPINCIYSHLQQQSTVKFWLYQQSQMRIKGKISGFDEFMNVVIDDALELP 60
Query: 67 IKSKT-----RKA--LGTIMLKGDNITLI 88
I KT KA LG I+LKGDNITLI
Sbjct: 61 IDEKTGAELPDKAVKLGRILLKGDNITLI 89
>gi|403214323|emb|CCK68824.1| hypothetical protein KNAG_0B03830 [Kazachstania naganishii CBS
8797]
Length = 90
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 54/83 (65%), Gaps = 7/83 (8%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTR 72
K V PIN IF +LQN + V IWL+E V+ RI G I GFDE+MN+V++ AEE + T
Sbjct: 2 KAAVPPINCIFNYLQNETSVTIWLFEQVSYRIRGKIRGFDEFMNVVVDEAEEVPLDKATG 61
Query: 73 K-------ALGTIMLKGDNITLI 88
+ LG I+LKGDNITLI
Sbjct: 62 REIGEKSVTLGRILLKGDNITLI 84
>gi|367008820|ref|XP_003678911.1| hypothetical protein TDEL_0A03680 [Torulaspora delbrueckii]
gi|359746568|emb|CCE89700.1| hypothetical protein TDEL_0A03680 [Torulaspora delbrueckii]
Length = 93
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 57/88 (64%), Gaps = 7/88 (7%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
K MV PIN IF +LQ ++ V WL+E V +RI G I GFDE+MN+V++ A E + KT
Sbjct: 5 SKAMVPPINCIFDYLQQQTLVTFWLFEQVGIRIRGKISGFDEFMNVVIDDALEIPVDPKT 64
Query: 72 -------RKALGTIMLKGDNITLIQNLN 92
+ LG I+LKGDNITLI +++
Sbjct: 65 GVEDIEKGRKLGKILLKGDNITLITSVD 92
>gi|401840391|gb|EJT43229.1| SME1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 85
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 57/85 (67%), Gaps = 7/85 (8%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK- 73
MV PIN IF +LQ ++ V IWL+E V +RI G I+GFDE+MN+V++ A E + S K
Sbjct: 1 MVPPINCIFNYLQQQTPVTIWLFEQVGIRIRGKIVGFDEFMNVVIDEAVEVPVNSTDGKE 60
Query: 74 ------ALGTIMLKGDNITLIQNLN 92
LG ++LKGDNITLI +++
Sbjct: 61 DVEKGTTLGRVLLKGDNITLITSID 85
>gi|156836424|ref|XP_001642276.1| hypothetical protein Kpol_218p3 [Vanderwaltozyma polyspora DSM
70294]
gi|156112763|gb|EDO14418.1| hypothetical protein Kpol_218p3 [Vanderwaltozyma polyspora DSM
70294]
Length = 93
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 57/88 (64%), Gaps = 7/88 (7%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
K M+ PIN IF +LQ ++ V WLYE V +RI G I GFDE+MN+V++ A E + KT
Sbjct: 5 SKAMMPPINCIFNYLQQQTLVTFWLYEQVGIRIRGKIAGFDEFMNVVIDDALEVPVDVKT 64
Query: 72 RK-------ALGTIMLKGDNITLIQNLN 92
K LG I+LKGDNITL+ +++
Sbjct: 65 GKEKLDEARKLGRILLKGDNITLLTSVD 92
>gi|146418481|ref|XP_001485206.1| hypothetical protein PGUG_02935 [Meyerozyma guilliermondii ATCC
6260]
Length = 84
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 2/77 (2%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
M+ PIN+IF+FLQ + V IWLYE L+I+G I GFDE+MNIV++ A E I +
Sbjct: 8 MLPPINVIFKFLQQQVPVTIWLYEQTQLKIQGRIRGFDEFMNIVIDDAVE--ILKDSEVP 65
Query: 75 LGTIMLKGDNITLIQNL 91
LG I+LKGDNITLI ++
Sbjct: 66 LGRILLKGDNITLISSV 82
>gi|410078143|ref|XP_003956653.1| hypothetical protein KAFR_0C05270 [Kazachstania africana CBS
2517]
gi|372463237|emb|CCF57518.1| hypothetical protein KAFR_0C05270 [Kazachstania africana CBS
2517]
Length = 94
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 56/93 (60%), Gaps = 7/93 (7%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ K V PIN IF +LQ + V WLYE V +RI G I GFDE+MNIV++ A E
Sbjct: 1 MSTSKPKAHVPPINCIFNYLQQQVPVTFWLYEQVGIRIRGKIRGFDEFMNIVIDDAVEIP 60
Query: 67 IKSKTRK-------ALGTIMLKGDNITLIQNLN 92
+ S T LG I+LKGDNITLI +++
Sbjct: 61 VDSTTGTEQVDKGIKLGRILLKGDNITLITSID 93
>gi|444314665|ref|XP_004177990.1| hypothetical protein TBLA_0A06790 [Tetrapisispora blattae CBS
6284]
gi|387511029|emb|CCH58471.1| hypothetical protein TBLA_0A06790 [Tetrapisispora blattae CBS
6284]
Length = 91
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 61/85 (71%), Gaps = 7/85 (8%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT--- 71
++ PINLIF +L+ +S +++WLYEN + RI+G I GFDE+MN+V+++A E I + T
Sbjct: 7 LIPPINLIFNYLEKQSTIKVWLYENTHSRIQGKISGFDEFMNLVIDNAIEIPIDNVTGVE 66
Query: 72 ----RKALGTIMLKGDNITLIQNLN 92
K LG I+LKGDNITLI +++
Sbjct: 67 QIENGKKLGQILLKGDNITLITSVD 91
>gi|254581938|ref|XP_002496954.1| ZYRO0D11968p [Zygosaccharomyces rouxii]
gi|238939846|emb|CAR28021.1| ZYRO0D11968p [Zygosaccharomyces rouxii]
Length = 93
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT- 71
K ++ PIN IF FLQ ++ V WL+E + RI G I GFDE+MN+V+E A E + +T
Sbjct: 6 KSVIPPINCIFGFLQQQTVVTFWLFEQLGTRIRGKISGFDEFMNVVIEDATEIPVDPQTG 65
Query: 72 ------RKALGTIMLKGDNITLIQNLN 92
K LG I+LKGDNITLI +++
Sbjct: 66 KEHLDRGKKLGKILLKGDNITLITSVD 92
>gi|417407598|gb|JAA50403.1| Putative small nuclear ribonucleoprotein e, partial [Desmodus
rotundus]
Length = 91
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQK MVQP NL+ R LQNRSR+Q WL E VN R+EG + GF E +++VL+ AEE
Sbjct: 9 KVQKEMVQPTNLVLRSLQNRSRIQAWLSEQVNRRLEGCVTGFGECVSLVLDEAEEIQSXX 68
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
T++ G +LK DN L+ +++
Sbjct: 69 XTKQP-GQNVLKADNSALLPSVS 90
>gi|50302335|ref|XP_451102.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640233|emb|CAH02690.1| KLLA0A02299p [Kluyveromyces lactis]
Length = 93
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 54/86 (62%), Gaps = 7/86 (8%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KV MV PIN I+ +L +++ V WLYE V RI G I GFDE+MN+V++ A E +
Sbjct: 5 KVGAPMVPPINCIYNYLHHQTTVTFWLYEQVQTRIRGKIRGFDEFMNVVIDDAFEIAVDP 64
Query: 70 KTRKA-------LGTIMLKGDNITLI 88
K+ K LG IMLKGDNITL+
Sbjct: 65 KSGKESDDKAVFLGRIMLKGDNITLV 90
>gi|302309857|ref|XP_002999588.1| hypothetical protein [Candida glabrata CBS 138]
gi|196049185|emb|CAR58061.1| unnamed protein product [Candida glabrata]
Length = 94
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 55/83 (66%), Gaps = 7/83 (8%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTR 72
K +V PIN IF LQ ++ V WLYE V +RI G I GFDE+MN+V++ A E I++K+
Sbjct: 8 KAIVPPINCIFNHLQQQTPVTFWLYEQVGIRIRGTIRGFDEFMNVVIDDAVEVPIEAKSG 67
Query: 73 K-------ALGTIMLKGDNITLI 88
+ LG I+LKGDNITLI
Sbjct: 68 RELVDQGTKLGRILLKGDNITLI 90
>gi|367001997|ref|XP_003685733.1| hypothetical protein TPHA_0E02070 [Tetrapisispora phaffii CBS
4417]
gi|357524032|emb|CCE63299.1| hypothetical protein TPHA_0E02070 [Tetrapisispora phaffii CBS
4417]
Length = 94
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 57/88 (64%), Gaps = 7/88 (7%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
K ++ PIN +F FLQ ++ V WLYE V RI G + GFDE+MN+V+++A E + ++T
Sbjct: 5 SKAVIPPINSVFNFLQQQTLVSFWLYEQVGFRIRGKVAGFDEFMNVVIDNAIEIPVDAET 64
Query: 72 -------RKALGTIMLKGDNITLIQNLN 92
K LG I+LKGDNITLI ++
Sbjct: 65 GIERVTDGKKLGRILLKGDNITLITTVD 92
>gi|397624778|gb|EJK67508.1| hypothetical protein THAOC_11446 [Thalassiosira oceanica]
Length = 222
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 55/80 (68%), Gaps = 4/80 (5%)
Query: 15 MVQPINLIFRF----LQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK 70
+ P LI R ++ ++RV+IWLYE+ + IEG I+GFDEYMN VL+SA E ++K+
Sbjct: 142 LCGPYILISRIPLAQIRKKTRVKIWLYEDTRMSIEGQIIGFDEYMNFVLDSATEVDMKTG 201
Query: 71 TRKALGTIMLKGDNITLIQN 90
R +G I+LKGD ITL+Q
Sbjct: 202 KRTDVGRILLKGDAITLMQT 221
>gi|190346690|gb|EDK38837.2| hypothetical protein PGUG_02935 [Meyerozyma guilliermondii ATCC
6260]
Length = 84
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 54/77 (70%), Gaps = 2/77 (2%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
M+ PIN+IF+FLQ + V IWLYE +I+G I GFDE+MNIV++ A E I +
Sbjct: 8 MLPPINVIFKFLQQQVPVTIWLYEQTQSKIQGRIRGFDEFMNIVIDDAVE--ILKDSEVP 65
Query: 75 LGTIMLKGDNITLIQNL 91
LG I+LKGDNITLI ++
Sbjct: 66 LGRILLKGDNITLISSV 82
>gi|45184940|ref|NP_982658.1| AAR116Wp [Ashbya gossypii ATCC 10895]
gi|44980549|gb|AAS50482.1| AAR116Wp [Ashbya gossypii ATCC 10895]
gi|374105858|gb|AEY94769.1| FAAR116Wp [Ashbya gossypii FDAG1]
Length = 97
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ K QK M+ PIN I+ +LQ ++ V WL++ +RI+G I GFDE+MN+V++ A E
Sbjct: 1 MSGKQQKPMMPPINCIYNYLQQQTTVTFWLFQQTQMRIKGRISGFDEFMNVVVDEAVEVP 60
Query: 67 IKSKTRKA-------LGTIMLKGDNITLI 88
+ K+ + LG I+LKGDNITLI
Sbjct: 61 VDEKSGEEQVGRSTRLGRILLKGDNITLI 89
>gi|401885285|gb|EJT49407.1| small nuclear ribonucleoprotein E [Trichosporon asahii var. asahii
CBS 2479]
gi|406694808|gb|EKC98129.1| small nuclear ribonucleoprotein E [Trichosporon asahii var. asahii
CBS 8904]
Length = 118
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 63/111 (56%), Gaps = 33/111 (29%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHIL-------------GFDEYMNIV 58
+KVMVQPIN++F FLQ RVQIWLY+N R+E I+ GFDE+MN+V
Sbjct: 4 RKVMVQPINILFSFLQKHQRVQIWLYDNNEFRLEAFIIVGLTLRGQRADGQGFDEFMNVV 63
Query: 59 LESAEE-YNIKS------KTRKALGT-------------IMLKGDNITLIQ 89
L+ EE Y+ + K R++LG I+LKGDNITL+Q
Sbjct: 64 LDETEEVYDCSAKPGKEVKPRRSLGELRQYGNALTLAGRILLKGDNITLVQ 114
>gi|393247818|gb|EJD55325.1| hypothetical protein AURDEDRAFT_50301, partial [Auricularia
delicata TFB-10046 SS5]
Length = 65
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 29 RSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEE-YNIKSKTRKALGTIMLKGDNITL 87
R+ + IWLY+NV +RIEG I+GFDE+MN+V++ A E Y K+K R+ LG I+LKGD ITL
Sbjct: 1 RTPISIWLYDNVEMRIEGRIIGFDEFMNVVIDDATEVYTDKTKERRLLGRILLKGDAITL 60
Query: 88 IQNL 91
IQ +
Sbjct: 61 IQQM 64
>gi|328859947|gb|EGG09054.1| hypothetical protein MELLADRAFT_96304 [Melampsora larici-populina
98AG31]
Length = 96
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 54/81 (66%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ + Q+VMVQPIN+IF+ LQ V IWLY+N R+EG I+GFDE+MN+VL++A E
Sbjct: 1 MSGRQQRVMVQPINVIFKHLQAGQLVHIWLYDNTEFRLEGKIIGFDEFMNVVLDNASEVW 60
Query: 67 IKSKTRKALGTIMLKGDNITL 87
+K+K + KG + L
Sbjct: 61 VKAKKGTPHREAVEKGTRVPL 81
>gi|432090682|gb|ELK24023.1| Small nuclear ribonucleoprotein E [Myotis davidii]
Length = 128
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 55/85 (64%), Gaps = 20/85 (23%)
Query: 10 KVQKVMVQPINLIFRFLQN-------------------RSRVQIWLYENVNLRIEGHILG 50
KVQKVMVQPI + + Q+ RSR+Q+WLYE VN+RIEG I+G
Sbjct: 9 KVQKVMVQPI-VSYAECQDREVRARKRGGKADGGLGGARSRIQVWLYEQVNMRIEGCIIG 67
Query: 51 FDEYMNIVLESAEEYNIKSKTRKAL 75
FDEYMN+VL+ AEE + K+K+RK L
Sbjct: 68 FDEYMNLVLDDAEEIHSKTKSRKQL 92
>gi|281204021|gb|EFA78217.1| hypothetical protein PPL_08867 [Polysphondylium pallidum PN500]
Length = 80
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 57/80 (71%), Gaps = 10/80 (12%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
+ VM++P+ S VQI L+E +LRIEG I+G DEYMN+VL++A E ++K KT
Sbjct: 7 KSVMLKPV----------SVVQIMLFEQTDLRIEGVIIGLDEYMNLVLDNAFEISMKKKT 56
Query: 72 RKALGTIMLKGDNITLIQNL 91
RK LG I+LKGDNITL+ ++
Sbjct: 57 RKPLGQILLKGDNITLVYDV 76
>gi|6062981|gb|AAF03088.1|AF126283_1 SmE protein [Leptomonas collosoma]
Length = 94
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 56/79 (70%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTR 72
K+MV+P ++I +F+ + RV +WL + +++IEG++LG+DE+MN+VL A E N K+K
Sbjct: 14 KLMVKPSSVIHKFMTTQQRVCVWLVHDAHIKIEGNLLGYDEFMNVVLGDATETNSKTKES 73
Query: 73 KALGTIMLKGDNITLIQNL 91
LG I+L+ DN+ ++ +
Sbjct: 74 THLGKILLRSDNVGVVHAI 92
>gi|408993|gb|AAC60592.1| fusion protein [Homo sapiens]
gi|737057|prf||1921318A B-raf oncogene
Length = 104
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/42 (78%), Positives = 38/42 (90%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHIL 49
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCII 48
>gi|171683351|ref|XP_001906618.1| hypothetical protein [Podospora anserina S mat+]
gi|170941635|emb|CAP67289.1| unnamed protein product [Podospora anserina S mat+]
Length = 96
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 60/82 (73%), Gaps = 5/82 (6%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK--- 70
V++ PIN +F+ LQ R+ VQIWLYE +++RI G I GFDE+MN+V++ A E SK
Sbjct: 12 VLLPPINFLFKLLQQRTPVQIWLYEQLSIRIIGIIRGFDEFMNLVIDDAVEVKQISKTND 71
Query: 71 --TRKALGTIMLKGDNITLIQN 90
TR+ LG I+LKGDN++LIQ+
Sbjct: 72 TETRRNLGQILLKGDNVSLIQS 93
>gi|431892912|gb|ELK03340.1| AP-1 complex subunit mu-2 [Pteropus alecto]
Length = 181
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 41/48 (85%)
Query: 29 RSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALG 76
RSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE + K+K+RK L
Sbjct: 18 RSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLA 65
>gi|332248094|ref|XP_003273196.1| PREDICTED: small nuclear ribonucleoprotein E [Nomascus
leucogenys]
Length = 52
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 45/51 (88%)
Query: 42 LRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
+RIEG I+GFDEYMN+VL+ AEE + K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 1 MRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 51
>gi|119178728|ref|XP_001241003.1| conserved hypothetical protein [Coccidioides immitis RS]
Length = 91
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 1 MSGGFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLE 60
M+G + P K ++QPI+ IF+ LQ RS V IWLYE + +RIEG I GFDE+MN+V++
Sbjct: 1 MAGRGQRGPA--KTLLQPIHFIFKLLQQRSTVSIWLYEQLAVRIEGKIRGFDEFMNLVID 58
Query: 61 SAEEYNIKSK 70
A E + +K
Sbjct: 59 DAVEVRVPTK 68
>gi|389602182|ref|XP_001566763.2| putative small nuclear ribonucleoprotein polypeptide e
[Leishmania braziliensis MHOM/BR/75/M2904]
gi|322505349|emb|CAM40282.2| putative small nuclear ribonucleoprotein polypeptide e
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 86
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 52/80 (65%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
+ + M P ++ RF+Q+ RV +WL + + R+EG++LG+DE+MN+VL E N+++
Sbjct: 3 SLTRQMENPTGVVHRFMQSHQRVCVWLVHDSHTRLEGNLLGYDEFMNVVLGDTTETNLRN 62
Query: 70 KTRKALGTIMLKGDNITLIQ 89
R LG I+L+ DN+ +I
Sbjct: 63 DKRYNLGKILLRSDNVGVIH 82
>gi|71412367|ref|XP_808372.1| small nuclear ribonucleoprotein Sm-E [Trypanosoma cruzi strain CL
Brener]
gi|70872563|gb|EAN86521.1| small nuclear ribonucleoprotein Sm-E, putative [Trypanosoma cruzi]
Length = 115
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTR 72
K MV+P +++ R++ RV +WL + ++IEG ILG+DE+MN+VL A E + K+K
Sbjct: 35 KQMVKPTSIVHRYMTEGQRVCVWLVHDTKMKIEGVILGYDEFMNVVLGDASEVHHKTKEV 94
Query: 73 KALGTIMLKGDNITLIQNLN 92
+G I+L+ DNI +I +
Sbjct: 95 VHVGKILLRSDNIGVIHPIG 114
>gi|225559154|gb|EEH07437.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
gi|240282077|gb|EER45580.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
gi|325088218|gb|EGC41528.1| small nuclear ribonucleoprotein E [Ajellomyces capsulatus H88]
Length = 113
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 4/69 (5%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
+K ++ PI+ IF+ LQ RS V IWLYE + +RIEG I GFDE+MN+V++ A E + +KT
Sbjct: 10 RKTLLAPIHFIFKLLQQRSVVSIWLYEQLAIRIEGKIRGFDEFMNLVVDDAVEVRLATKT 69
Query: 72 ----RKALG 76
R+ LG
Sbjct: 70 EDEKRRQLG 78
>gi|71666529|ref|XP_820222.1| small nuclear ribonucleoprotein Sm-E [Trypanosoma cruzi strain CL
Brener]
gi|70885559|gb|EAN98371.1| small nuclear ribonucleoprotein Sm-E, putative [Trypanosoma
cruzi]
Length = 86
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTR 72
K MV+P +++ R++ RV +WL + ++IEG ILG+DE+MN+VL A E + K+K
Sbjct: 6 KQMVKPTSIVHRYMTEGQRVCVWLVHDTKMKIEGVILGYDEFMNVVLGDASEVHHKTKEV 65
Query: 73 KALGTIMLKGDNITLIQNLN 92
+G I+L+ DNI +I +
Sbjct: 66 VHVGKILLRSDNIGVIHPIG 85
>gi|67541130|ref|XP_664339.1| hypothetical protein AN6735.2 [Aspergillus nidulans FGSC A4]
gi|40739363|gb|EAA58553.1| hypothetical protein AN6735.2 [Aspergillus nidulans FGSC A4]
Length = 91
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 11 VQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK 70
+K ++ PI+ IF+ LQ RS V IWLYE + RIEG I GFDE+MN+V++ A E + +K
Sbjct: 9 ARKTLLAPIHFIFKLLQQRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVIDDAVEVRLATK 68
Query: 71 T----RKALG 76
+ R+ LG
Sbjct: 69 SEEEKRRPLG 78
>gi|401425575|ref|XP_003877272.1| small nuclear ribonucleoprotein polypeptide e,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
gi|322493517|emb|CBZ28805.1| small nuclear ribonucleoprotein polypeptide e,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
Length = 86
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 49/74 (66%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
M P ++ RF+Q+ RV +WL + LR+EG++LG+DE+MN+VL E N+++
Sbjct: 8 MENPTGVVHRFMQDHQRVCVWLVHDPQLRLEGNLLGYDEFMNVVLGDTTETNLRNNKSYR 67
Query: 75 LGTIMLKGDNITLI 88
LG I+L+ DN+ +I
Sbjct: 68 LGKILLRSDNVGVI 81
>gi|119589573|gb|EAW69167.1| hCG23490, isoform CRA_b [Homo sapiens]
Length = 52
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 44/51 (86%)
Query: 42 LRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
+RIEG I+GFDEYMN+VL+ AEE + K+K+RK LG IMLKG NITL+Q+++
Sbjct: 1 MRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGGNITLLQSVS 51
>gi|398019352|ref|XP_003862840.1| small nuclear ribonucleoprotein polypeptide e, putative
[Leishmania donovani]
gi|322501071|emb|CBZ36148.1| small nuclear ribonucleoprotein polypeptide e, putative
[Leishmania donovani]
Length = 86
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
M P ++ RF+Q+ RV +WL + +R+EG++LG+DE+MN+VL E N+++
Sbjct: 8 MENPTGVVHRFMQDHQRVCVWLVHDPQMRLEGNLLGYDEFMNVVLGDTTETNLRNNKSYR 67
Query: 75 LGTIMLKGDNITLI 88
LG I+L+ DN+ +I
Sbjct: 68 LGKILLRSDNVGVI 81
>gi|146093720|ref|XP_001466971.1| putative small nuclear ribonucleoprotein polypeptide e
[Leishmania infantum JPCM5]
gi|134071335|emb|CAM70021.1| putative small nuclear ribonucleoprotein polypeptide e
[Leishmania infantum JPCM5]
Length = 86
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
M P ++ RF+Q+ RV +WL + +R+EG++LG+DE+MN+VL E N+++
Sbjct: 8 MENPTGVVHRFMQDHQRVCVWLVHDPQMRLEGNLLGYDEFMNVVLGDTTETNLRNNKSYR 67
Query: 75 LGTIMLKGDNITLI 88
LG I+L+ DN+ +I
Sbjct: 68 LGKILLRSDNVGVI 81
>gi|157872335|ref|XP_001684716.1| putative small nuclear ribonucleoprotein polypeptide e
[Leishmania major strain Friedlin]
gi|68127786|emb|CAJ06176.1| putative small nuclear ribonucleoprotein polypeptide e
[Leishmania major strain Friedlin]
Length = 86
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
M P ++ RF+Q+ RV +WL + +R+EG++LG+DE+MN+VL E N+++
Sbjct: 8 MENPTGVVHRFMQDHQRVCVWLVHDPQIRLEGNLLGYDEFMNVVLGDTTETNLRNSKSYR 67
Query: 75 LGTIMLKGDNITLI 88
LG I+L+ DN+ +I
Sbjct: 68 LGKILLRSDNVGVI 81
>gi|399949646|gb|AFP65304.1| small nuclear ribonucleoprotein E [Chroomonas mesostigmatica
CCMP1168]
Length = 82
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 53/77 (68%), Gaps = 3/77 (3%)
Query: 17 QPINLIFRFLQNRSRVQIWLYENVNLR-IEGHILGFDEYMNIVLESAEEYNIKSKTRKAL 75
QPINL+FRF QNR+ + I L +N L I G ILGFDE+MNIVLE+A E N S L
Sbjct: 4 QPINLLFRFFQNRNLISITL-QNAKLNTIIGIILGFDEFMNIVLENAFEIN-SSGKNIFL 61
Query: 76 GTIMLKGDNITLIQNLN 92
G IM+KGD I +I +L+
Sbjct: 62 GHIMIKGDCIAIISDLS 78
>gi|72390193|ref|XP_845391.1| small nuclear ribonucleoprotein Sm-E [Trypanosoma brucei TREU927]
gi|9837178|gb|AAG00463.1|AF280395_1 Sm-E [Trypanosoma brucei]
gi|62360561|gb|AAX80973.1| small nuclear ribonucleoprotein Sm-E [Trypanosoma brucei]
gi|70801926|gb|AAZ11832.1| small nuclear ribonucleoprotein Sm-E [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261328791|emb|CBH11769.1| small nuclear ribonucleoprotein Sm-E [Trypanosoma brucei
gambiense DAL972]
Length = 86
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 51/80 (63%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTR 72
K MV+P ++ R+L+ RV +WL ++IEG +LG+DE+MN+VL A E ++K+
Sbjct: 6 KQMVKPTVVVHRYLKESQRVCVWLVHETKMKIEGVLLGYDEFMNVVLGDATEVHLKTGEV 65
Query: 73 KALGTIMLKGDNITLIQNLN 92
LG I+L+ DN+ +I +
Sbjct: 66 VQLGKILLRSDNVGVIHPIG 85
>gi|340054134|emb|CCC48428.1| small nuclear ribonucleoprotein Sm-E [Trypanosoma vivax Y486]
Length = 86
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTR 72
K M++P N++ R+++ RV +WL + ++IEG +LG+DE+MN+VL A E K+
Sbjct: 6 KQMIKPTNVVHRYMKEGQRVCVWLVHDTKMKIEGVLLGYDEFMNVVLGDAAEVIQKTGET 65
Query: 73 KALGTIMLKGDNITLIQ 89
+G I+L+ DN+ LI
Sbjct: 66 VQVGKILLRSDNVGLIH 82
>gi|340508793|gb|EGR34424.1| monoglyceride lipase, putative [Ichthyophthirius multifiliis]
Length = 322
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHI--LGFDEYMNIVLESA-E 63
M+ K K + P+ IF FLQ RVQIWLYEN +L++EG I +GFDEYMN+V++ A E
Sbjct: 1 MSKKFTKTITNPLTTIFGFLQKSVRVQIWLYENTDLKLEGKIVVIGFDEYMNMVIDEAIE 60
Query: 64 EYNIKSKTRKALGTIM 79
Y K + KA+ +
Sbjct: 61 VYKSKVQPPKAICLVF 76
>gi|440468395|gb|ELQ37560.1| sm snRNP core protein Sme1 [Magnaporthe oryzae Y34]
gi|440482793|gb|ELQ63252.1| sm snRNP core protein Sme1 [Magnaporthe oryzae P131]
Length = 126
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 40/52 (76%)
Query: 13 KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEE 64
K+++ PIN IF+ LQ+ + V IWLYE + +RIEG I GFDE+MN+V++ A E
Sbjct: 11 KILLPPINCIFKLLQSHATVSIWLYEQLGIRIEGKIRGFDEFMNLVIDDAVE 62
>gi|449018855|dbj|BAM82257.1| similar to Sm protein E [Cyanidioschyzon merolae strain 10D]
Length = 181
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 54/79 (68%), Gaps = 4/79 (5%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVL-ESAEEYNIKSKTRK--- 73
P L+ + ++RV++WL+EN +EG + GFDE+ N+VL ++ E++ +K ++
Sbjct: 12 PEQLLATLARQQARVEVWLFENTRYSLEGTLRGFDEHTNLVLVDTVEQWGSTAKHKRRTV 71
Query: 74 ALGTIMLKGDNITLIQNLN 92
ALGTI+LKG+N+ L+++L
Sbjct: 72 ALGTILLKGENVVLVRSLG 90
>gi|293334659|ref|NP_001170587.1| uncharacterized protein LOC100384620 [Zea mays]
gi|238006188|gb|ACR34129.1| unknown [Zea mays]
Length = 143
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 37/42 (88%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHIL 49
+ KVQ++M QPINLIFRFLQ+++R+QIWL+E +LRIEG I+
Sbjct: 3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII 44
>gi|449017577|dbj|BAM80979.1| Sm protein E [Cyanidioschyzon merolae strain 10D]
Length = 105
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 54/79 (68%), Gaps = 4/79 (5%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVL-ESAEEYNIKSKTRK--- 73
P L+ + ++RV++WL+EN +EG + GFDE+ N+VL ++ E++ +K ++
Sbjct: 12 PEQLLATLARQQARVEVWLFENTRYSLEGTLRGFDEHTNLVLVDTVEQWGSTAKHKRRTV 71
Query: 74 ALGTIMLKGDNITLIQNLN 92
ALGTI+LKG+N+ L+++L
Sbjct: 72 ALGTILLKGENVVLVRSLG 90
>gi|449016467|dbj|BAM79869.1| Sm protein E [Cyanidioschyzon merolae strain 10D]
Length = 105
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVL-ESAEEYNIKSKTRK--- 73
P L+ + ++RV++WL+EN +EG + GFDE+ N+VL ++ E++ +K ++
Sbjct: 12 PEQLLATLARQQARVEVWLFENTRYSLEGTLRGFDEHTNLVLVDTVEQWGSTAKHKRRTV 71
Query: 74 ALGTIMLKGDNITLIQNL 91
ALGTI+LKG+N+ L+++L
Sbjct: 72 ALGTILLKGENVVLVRSL 89
>gi|123468440|ref|XP_001317438.1| Sm protein [Trichomonas vaginalis G3]
gi|121900172|gb|EAY05215.1| Sm protein [Trichomonas vaginalis G3]
Length = 93
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 48/72 (66%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ + +L+ R+R+++ L +N + +EG++LGFDEYMN+VL + E K TR LGT
Sbjct: 15 PLKIYVSYLKERARLRVHLNDNSKMYMEGNLLGFDEYMNLVLGDSYEVYPKENTRVPLGT 74
Query: 78 IMLKGDNITLIQ 89
+L+G+ + ++
Sbjct: 75 SLLRGECVGMVH 86
>gi|162606552|ref|XP_001713306.1| putative small nuclear ribonucleoprotein E [Guillardia theta]
gi|12580772|emb|CAC27090.1| putative small nuclear ribonucleoprotein E [Guillardia theta]
Length = 78
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
M+QPIN +F+FL+ ++ V I + + +EG+++GFDE+MN+V+E+ E S +
Sbjct: 1 MIQPINQLFKFLKEKNLVTIIFKGSNDYILEGNLIGFDEFMNLVIENTTEKK-DSLIVRD 59
Query: 75 LGTIMLKGDNITLIQNLN 92
LG +++KGD+I I +++
Sbjct: 60 LGYVLIKGDSILTISSIH 77
>gi|390341850|ref|XP_003725544.1| PREDICTED: small nuclear ribonucleoprotein E-like
[Strongylocentrotus purpuratus]
Length = 48
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 33/37 (89%)
Query: 55 MNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNL 91
MN+VL+ AEEY+ K+KTRK LG I+LKGDNITLIQN+
Sbjct: 1 MNVVLDDAEEYHKKNKTRKPLGRILLKGDNITLIQNV 37
>gi|322702469|gb|EFY94114.1| LSM domain-containing protein [Metarhizium anisopliae ARSEF 23]
Length = 190
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 24/87 (27%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHIL-------------------GFDEY 54
V++ PIN+IF+ LQ+ + V +WLYE +++RIEG I GFDE+
Sbjct: 12 VLLPPINMIFKLLQSNATVSVWLYEQLSIRIEGKIRVRTPFKLKSVRCHADWLSQGFDEF 71
Query: 55 MNIVLESAEEYNIKSK-----TRKALG 76
MN+V++ A E + +K TR+ LG
Sbjct: 72 MNLVIDDAVEVSQVTKTNDKETRRQLG 98
>gi|161899071|ref|XP_001712762.1| mRNA splicing protein [Bigelowiella natans]
gi|75756255|gb|ABA27150.1| mRNA splicing protein [Bigelowiella natans]
Length = 80
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 11 VQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK 70
++K+MV PINL++R+L ++ + + L E N I G I+GFDEYMNIVL A N +
Sbjct: 1 MKKLMVHPINLLYRYLIGKNIILVCLKEK-NKTINGKIIGFDEYMNIVLSEAVAKN--KE 57
Query: 71 TRKALGTIMLKGDNIT 86
K I++KG+ I+
Sbjct: 58 VEKIKNLILVKGNQIS 73
>gi|118575248|ref|YP_874991.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
gi|118193769|gb|ABK76687.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
Length = 78
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 38/46 (82%), Gaps = 1/46 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
I G++LGFD++MN++LES+EE ++ +TR LGTI+++GDN+ +I
Sbjct: 28 IRGNLLGFDQHMNLLLESSEEIPVEGETR-TLGTIVVRGDNVVIIS 72
>gi|449524146|ref|XP_004169084.1| PREDICTED: small nuclear ribonucleoprotein E-like isoform 1
[Cucumis sativus]
gi|449524148|ref|XP_004169085.1| PREDICTED: small nuclear ribonucleoprotein E-like isoform 2
[Cucumis sativus]
Length = 39
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 31/36 (86%)
Query: 55 MNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
MN+VL+ AEE N+K K++KALG I+LKGDNITL+ N
Sbjct: 1 MNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN 36
>gi|307203438|gb|EFN82513.1| Probable small nuclear ribonucleoprotein E [Harpegnathos
saltator]
Length = 51
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQ-IWLYENVNLRIEGHILGFDEYMN 56
KVQKVMVQ I L+ +LQN VQ I L + V L IEGHI+GF+EY+N
Sbjct: 4 KVQKVMVQFIRLVLFYLQNHRCVQVIRLLDKVKLEIEGHIIGFNEYVN 51
>gi|255513759|gb|EET90024.1| Sm-family ribonucleoprotein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 75
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 17 QPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALG 76
+P +L+ R + +V I L N+N+R G + FD +MNIVL++AEE + + + LG
Sbjct: 5 RPFDLLNRVIS--QQVLIRLKNNLNIR--GKVTSFDAHMNIVLDNAEELDANGELKAKLG 60
Query: 77 TIMLKGDNITLI 88
TI+L+G NI +
Sbjct: 61 TILLRGGNIIFV 72
>gi|329765899|ref|ZP_08257464.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|393795327|ref|ZP_10378691.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
BG20]
gi|329137605|gb|EGG41876.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 78
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 38/46 (82%), Gaps = 1/46 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
I G++LGFD++MN++L+S+EE ++ + K+LGTI+++GDN+ +I
Sbjct: 28 IRGNLLGFDQHMNLLLDSSEEIPVEGNS-KSLGTIVVRGDNVVMIS 72
>gi|407461730|ref|YP_006773047.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045352|gb|AFS80105.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
Length = 78
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Query: 41 NLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
N I G++LGFD++MN++L+S+EE + + K LGTI+++GDN+ +I
Sbjct: 25 NKTIRGNLLGFDQHMNLLLDSSEEIPAEGDS-KGLGTIVVRGDNVVMIS 72
>gi|340344088|ref|ZP_08667220.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519229|gb|EGP92952.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 78
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 37/46 (80%), Gaps = 1/46 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
I G++LGFD++MN++L+S+EE + + K+LGTI+++GDN+ +I
Sbjct: 28 IRGNLLGFDQHMNLLLDSSEEIPTEGNS-KSLGTIVVRGDNVVMIS 72
>gi|303388441|ref|XP_003072455.1| small nuclear ribonucleoprotein E [Encephalitozoon intestinalis
ATCC 50506]
gi|303301595|gb|ADM11095.1| small nuclear ribonucleoprotein E [Encephalitozoon intestinalis
ATCC 50506]
Length = 73
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 15/80 (18%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLES-AEEYNIKSKTRKA 74
+ P+ I+ FL + V+IW +++ +R +G I+GFDEYMNIV++S A+ Y
Sbjct: 8 ILPLEKIYAFLSRAADVEIW-EKDIGVRHKGRIVGFDEYMNIVMDSGAKRY--------- 57
Query: 75 LGTIMLKGDNITLIQNLNPD 94
+LKGD I+++ + D
Sbjct: 58 ----LLKGDCISVVFGKDID 73
>gi|407464058|ref|YP_006774940.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
gi|407047246|gb|AFS81998.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
Length = 78
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Query: 41 NLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
N I G++LGFD++MN++L+S+EE + + K+LG+I+++GDN+ +I
Sbjct: 25 NKTIRGNLLGFDQHMNLLLDSSEEIPAEGDS-KSLGSIVVRGDNVVMIS 72
>gi|386875009|ref|ZP_10117213.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
gi|386807169|gb|EIJ66584.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
Length = 74
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
I G +LGFD++MN++L+S+EE + + K+LGTI+++GDN+ +I
Sbjct: 24 IRGTLLGFDQHMNLLLDSSEEIPAEGDS-KSLGTIVVRGDNVVMIS 68
>gi|161527729|ref|YP_001581555.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|160339030|gb|ABX12117.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
Length = 78
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Query: 41 NLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
N I G++LGFD++MN++L+S+EE + + K LG+I+++GDN+ +I
Sbjct: 25 NKTIRGNLLGFDQHMNLLLDSSEEIPAEGEA-KGLGSIVVRGDNVVMIS 72
>gi|170085071|ref|XP_001873759.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651311|gb|EDR15551.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 86
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P+ LI R + +R IW+ + G +LGFD+++N+VLE EY + +K L
Sbjct: 7 PLELIDRCIGSR----IWVIMKSDREFTGKLLGFDDFVNMVLEDVTEYETTPQGKKTTQL 62
Query: 76 GTIMLKGDNITLI--QNLNPDE 95
+L G+NI ++ ++ PDE
Sbjct: 63 AQTLLNGNNICMLIPGSVGPDE 84
>gi|367033203|ref|XP_003665884.1| hypothetical protein MYCTH_2310069 [Myceliophthora thermophila
ATCC 42464]
gi|347013156|gb|AEO60639.1| hypothetical protein MYCTH_2310069 [Myceliophthora thermophila
ATCC 42464]
Length = 59
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHI 48
V++ PIN +FR LQ R+ VQIWLYE +++RI G I
Sbjct: 12 VLLPPINFLFRLLQQRTTVQIWLYEQLSIRIIGTI 46
>gi|452077675|gb|AGF93625.1| like-Sm ribonucleoprotein, eukaryotic and archaea-type, core
[uncultured organism]
Length = 73
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 9/80 (11%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK 73
V+++P N + L + V++ L + L+ G ++GFD++MN+VLE EE K +R+
Sbjct: 2 VIMKPSNFLNENLD--TEVELLLKDGSILK--GTLIGFDDHMNLVLEDTEEK--KEDSRR 55
Query: 74 ALGTIMLKGDNITLIQNLNP 93
+GTI+L+G+N+ LNP
Sbjct: 56 RIGTIILRGNNVV---TLNP 72
>gi|154309621|ref|XP_001554144.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
Length = 59
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHI 48
+KV++ PIN IF+ LQ + V IWLYE + +RIEG I
Sbjct: 9 RKVLLPPINFIFKLLQQHTPVSIWLYEQLGIRIEGKI 45
>gi|84995270|ref|XP_952357.1| small nuclear ribonucleoprotein associated protein b [Theileria
annulata strain Ankara]
gi|65302518|emb|CAI74625.1| small nuclear ribonucleoprotein associated protein b, putative
[Theileria annulata]
Length = 155
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 13/69 (18%)
Query: 30 SRVQIWLYENV------NLRIEGHILGFDEYMNIVLESAEEYNI-------KSKTRKALG 76
+R+Q WL NV N + G ++ FD+YMN+VL EE+ + +++ ++ LG
Sbjct: 6 TRMQHWLQYNVRVTLKDNRKFVGTLVAFDKYMNLVLSDCEEFRMTLGKDKNRTEVKRTLG 65
Query: 77 TIMLKGDNI 85
++L+G+NI
Sbjct: 66 FVLLRGENI 74
>gi|336376883|gb|EGO05218.1| hypothetical protein SERLA73DRAFT_174233 [Serpula lacrymans var.
lacrymans S7.3]
gi|336389815|gb|EGO30958.1| hypothetical protein SERLADRAFT_455383 [Serpula lacrymans var.
lacrymans S7.9]
Length = 85
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI--KSKTRK 73
+ P+ LI R + +R IW+ + G +LGFD+++N+VLE EY + K +
Sbjct: 5 ILPLELIDRCIGSR----IWVIMKSDREFTGTLLGFDDFVNMVLEDVTEYETTPQGKKKT 60
Query: 74 ALGTIMLKGDNITLI--QNLNPDE 95
L +L G+NI ++ + PDE
Sbjct: 61 KLAQTLLNGNNICMLIPGSAGPDE 84
>gi|389751535|gb|EIM92608.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 85
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK-- 73
+ P+ LI R + +R IW+ G +LGFD+++N+VLE E+ I S RK
Sbjct: 5 ILPLELIDRCIGSR----IWVIMKNEREFTGTLLGFDDFVNMVLEDVTEFEITSAGRKKT 60
Query: 74 ALGTIMLKGDNITLI 88
AL +L G+NI ++
Sbjct: 61 ALRQTLLNGNNICML 75
>gi|444725073|gb|ELW65653.1| 60S ribosomal protein L7 [Tupaia chinensis]
Length = 186
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 23/24 (95%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQ 33
KVQKVMVQPI LIFR+LQNRSR+Q
Sbjct: 9 KVQKVMVQPIKLIFRYLQNRSRIQ 32
>gi|403411591|emb|CCL98291.1| predicted protein [Fibroporia radiculosa]
Length = 600
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--LGTIMLKGDNITLI 88
+IW+ G +LGFD+++N+VLE EY I + RKA L +L G+NI ++
Sbjct: 533 RIWVIMKSEREFTGTLLGFDDFVNMVLEDVTEYEITPQGRKATKLAQTLLNGNNICML 590
>gi|390939095|ref|YP_006402833.1| Sm ribonucleoprotein-like protein [Desulfurococcus fermentans DSM
16532]
gi|390192202|gb|AFL67258.1| Like-Sm ribonucleoprotein core [Desulfurococcus fermentans DSM
16532]
Length = 75
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNL 91
Q+ + N+ + G + FD+++NIVL+ AEE TRK LGT++++GD + LI L
Sbjct: 16 QVLIKTKDNIPLRGKLRSFDQHLNIVLDDAEEILSNGSTRK-LGTVVIRGDTVVLISPL 73
>gi|358054346|dbj|GAA99272.1| hypothetical protein E5Q_05966 [Mixia osmundae IAM 14324]
Length = 83
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA- 74
+ P+ LI + + +R +W+ I G +LGFD+++N+VL+ EY ++ RKA
Sbjct: 5 ILPLELIDKCIGSR----LWVVLKSEREIVGTLLGFDDFVNMVLDDVTEYENTAQGRKAT 60
Query: 75 -LGTIMLKGDNITLI 88
LG +L G+NI ++
Sbjct: 61 KLGQTLLNGNNIAML 75
>gi|347522771|ref|YP_004780341.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
gi|343459653|gb|AEM38089.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
Length = 75
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
+ G + FD+++N+VLE AEE TRK LGT++++GDN+ LI
Sbjct: 27 VRGKLKSFDQHLNLVLEEAEEIKSDGSTRK-LGTLVIRGDNVVLIS 71
>gi|444731320|gb|ELW71676.1| Transmembrane protein 178 [Tupaia chinensis]
Length = 264
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/24 (83%), Positives = 23/24 (95%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQ 33
KVQKV VQPINLIFR+LQNRS++Q
Sbjct: 9 KVQKVTVQPINLIFRYLQNRSQIQ 32
>gi|159110758|ref|XP_001705624.1| SnRNP Sm-like protein, putative [Giardia lamblia ATCC 50803]
gi|157433711|gb|EDO77950.1| SnRNP Sm-like protein, putative [Giardia lamblia ATCC 50803]
Length = 85
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
M P + F + SRV +W + + + G +G DE+ N+VL+ A I +
Sbjct: 1 MPSPALELCAFARANSRVTLWPVDPHSGVLTGTCVGLDEFFNVVLQDA-TLEIPGSDPTS 59
Query: 75 LGTIMLKGDNITLIQNLNPDE 95
L ++++ D I ++ + P E
Sbjct: 60 LPVVLVRADTIAMVHTIAPKE 80
>gi|71030572|ref|XP_764928.1| small nuclear ribonucleoprotein B [Theileria parva strain Muguga]
gi|68351884|gb|EAN32645.1| small nuclear ribonucleoprotein B, putative [Theileria parva]
Length = 155
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 13/69 (18%)
Query: 30 SRVQIWLYENV------NLRIEGHILGFDEYMNIVLESAEEYNI-------KSKTRKALG 76
+R+Q WL NV N + G ++ +D+YMN+VL EE+ + +++ ++ LG
Sbjct: 6 TRMQHWLQYNVRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEFRMTLGKDKNRTEVKRTLG 65
Query: 77 TIMLKGDNI 85
++L+G+NI
Sbjct: 66 FVLLRGENI 74
>gi|432328294|ref|YP_007246438.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
gi|432135003|gb|AGB04272.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
Length = 72
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 6/71 (8%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
M P+ ++ F+ R+ + L +N L EG ++GFD+YMN+VL EE + TR+
Sbjct: 1 MTMPLKMLENFMN--KRISLLLKDNRVL--EGKLVGFDDYMNMVLMDTEE-KTEEMTRR- 54
Query: 75 LGTIMLKGDNI 85
LGT++L+G+N+
Sbjct: 55 LGTVILRGNNV 65
>gi|51847692|gb|AAU10483.1| small nuclear ribonucleoprotein polypepide-E [Felis catus]
Length = 32
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 26/31 (83%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALG 76
G I+GFDEYMN+VL+ AEE + K+K+RK LG
Sbjct: 2 GCIIGFDEYMNLVLDDAEEIHSKTKSRKQLG 32
>gi|218884605|ref|YP_002428987.1| Small nuclear ribonucleoprotein (snRNP)-like protein
[Desulfurococcus kamchatkensis 1221n]
gi|218766221|gb|ACL11620.1| Small nuclear ribonucleoprotein (snRNP) - like protein
[Desulfurococcus kamchatkensis 1221n]
Length = 75
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
V I +N+ LR G + FD+++NIVL+ AEE TRK LGTI+++GD + LI
Sbjct: 16 HVLIKTKDNIPLR--GKLRSFDQHLNIVLDDAEEILSNGSTRK-LGTIVIRGDTVVLISP 72
Query: 91 L 91
L
Sbjct: 73 L 73
>gi|323507716|emb|CBQ67587.1| probable U6 snRNA-associated Sm-like protein LSm5 [Sporisorium
reilianum SRZ2]
Length = 103
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK-- 73
+ P+ LI + + + IW+ + G +LGFD+Y+N+VLE EY +K
Sbjct: 22 ILPLELIDKCIGS----SIWVIMKTDREFSGTLLGFDDYVNMVLEDVTEYETTPDGKKKK 77
Query: 74 -ALGTIMLKGDNITLI 88
LG +L G+NI ++
Sbjct: 78 TKLGQTLLNGNNICML 93
>gi|302697739|ref|XP_003038548.1| hypothetical protein SCHCODRAFT_13369 [Schizophyllum commune
H4-8]
gi|300112245|gb|EFJ03646.1| hypothetical protein SCHCODRAFT_13369 [Schizophyllum commune
H4-8]
Length = 84
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA- 74
+ P+ LI R + +R IW+ + G +LGFD+++N+VLE EY + RK
Sbjct: 5 ILPLELIDRCIGSR----IWVVMKNDHEFTGTLLGFDDFVNMVLEDVTEYETTAAGRKKT 60
Query: 75 -LGTIMLKGDNITLI 88
L +L G+NI ++
Sbjct: 61 QLAQTLLNGNNICIL 75
>gi|167043902|gb|ABZ08590.1| putative LSM domain protein [uncultured marine crenarchaeote
HF4000_APKG3H9]
gi|167044597|gb|ABZ09270.1| putative LSM domain protein [uncultured marine crenarchaeote
HF4000_APKG7F11]
Length = 76
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 41 NLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
N I G++LGFD++MN++L+ AEE + +LG+++++GDN+ +I
Sbjct: 25 NKTIRGNLLGFDQHMNLLLDQAEEI-LSDGDSNSLGSLVVRGDNVVMIS 72
>gi|115395198|ref|XP_001213486.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114193055|gb|EAU34755.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 83
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + +R IW+ + G +LGFD+Y+N+VLE E++ S T++ L
Sbjct: 7 PLELIDKCVGSR----IWVIMKNDKEFSGTLLGFDDYVNMVLEDVTEFDY-SGTQEKLPK 61
Query: 78 IMLKGDNITLI 88
I+L G+N+ ++
Sbjct: 62 ILLNGNNVCML 72
>gi|15920992|ref|NP_376661.1| small nuclear ribonucleoprotein [Sulfolobus tokodaii str. 7]
gi|342306290|dbj|BAK54379.1| archaeal Sm protein [Sulfolobus tokodaii str. 7]
Length = 79
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNP 93
+ G + +D +MN+VLE++EE TRK +GTI+++GDN+ L+ ++P
Sbjct: 31 VRGTLKSYDMHMNLVLENSEEVMSDGSTRK-VGTIIIRGDNVILVSPMSP 79
>gi|48477793|ref|YP_023499.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790]
gi|48430441|gb|AAT43306.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790]
Length = 71
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 21 LIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIML 80
L + L+ ++ L N +EG + G+DEYMN+ L+ AEE +T++ LGT+++
Sbjct: 4 LPMKMLEESLNKKVSLLLKDNRVLEGTLAGYDEYMNMTLDDAEE---SGETQRKLGTVVI 60
Query: 81 KGDNITLI 88
+G N+ I
Sbjct: 61 RGSNVVRI 68
>gi|388852511|emb|CCF53913.1| probable U6 snRNA-associated Sm-like protein LSm5 [Ustilago
hordei]
Length = 103
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI---KSKTR 72
+ P+ LI + + + IW+ + G +LGFD+Y+N+VLE EY K +
Sbjct: 22 ILPLELIDKCIGS----SIWVIMKTDREFSGTLLGFDDYVNMVLEDVTEYETCLDGKKKK 77
Query: 73 KALGTIMLKGDNITLI 88
LG +L G+NI ++
Sbjct: 78 TELGQTLLNGNNICML 93
>gi|449551015|gb|EMD41979.1| hypothetical protein CERSUDRAFT_110522 [Ceriporiopsis
subvermispora B]
Length = 85
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY--NIKSKTRKAL 75
P+ LI R + +R IW+ + G +LGFD+++N+VLE EY + K + L
Sbjct: 7 PLELIDRCIGSR----IWVIMKSDREFTGTLLGFDDFVNMVLEDVTEYENTPQGKKKTQL 62
Query: 76 GTIMLKGDNITLI--QNLNPDEV 96
+L G+NI ++ + PD+
Sbjct: 63 AQTLLNGNNICMLIPGSSGPDDA 85
>gi|193891015|gb|ACF28661.1| small nuclear ribonucleoprotein E [Amphidinium carterae]
Length = 94
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P+ LI + + +R IW+ + + G + GFD+Y+N+VL+ EY + +K L
Sbjct: 12 PLALIDKCIGSR----IWVIMKGDKELVGTLRGFDDYVNMVLDDVREYTFTPEGKKVTQL 67
Query: 76 GTIMLKGDNIT-LIQNLNPDE 95
+I+L G+NIT ++ +P+E
Sbjct: 68 ESILLNGNNITMMVPGGDPEE 88
>gi|156088647|ref|XP_001611730.1| Sm domain containing protein [Babesia bovis]
gi|154798984|gb|EDO08162.1| Sm domain containing protein [Babesia bovis]
Length = 159
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 15/71 (21%)
Query: 30 SRVQIWLYENVNLRIE------GHILGFDEYMNIVLESAEEYNI---------KSKTRKA 74
+R+Q WL V + I+ G + FD++MN+VL EE+ I K + ++
Sbjct: 6 TRMQQWLQYRVRVAIKDGRKFVGTFIAFDKHMNLVLADCEEFRITKGKGPDKQKVELKRT 65
Query: 75 LGTIMLKGDNI 85
LG IML+G+NI
Sbjct: 66 LGFIMLRGENI 76
>gi|449329361|gb|AGE95634.1| small nuclear ribonucleoprotein e [Encephalitozoon cuniculi]
Length = 111
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 15/83 (18%)
Query: 6 KMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY 65
KM +++ V+ P+ I+ FL V+IW +++ + +G I+GFDEYMN+V++
Sbjct: 38 KMGGELRSVL--PLEKIYDFLSRSIDVEIW-EKDMGAKHKGRIVGFDEYMNVVVDGET-- 92
Query: 66 NIKSKTRKALGTIMLKGDNITLI 88
G +LKGD I +I
Sbjct: 93 ----------GRYLLKGDCICVI 105
>gi|254166807|ref|ZP_04873661.1| hypothetical protein ABOONEI_1899 [Aciduliprofundum boonei T469]
gi|254167437|ref|ZP_04874289.1| hypothetical protein ABOONEI_2250 [Aciduliprofundum boonei T469]
gi|289596330|ref|YP_003483026.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
gi|197623700|gb|EDY36263.1| hypothetical protein ABOONEI_2250 [Aciduliprofundum boonei T469]
gi|197624417|gb|EDY36978.1| hypothetical protein ABOONEI_1899 [Aciduliprofundum boonei T469]
gi|289534117|gb|ADD08464.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
Length = 72
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 6/71 (8%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
M P+ ++ FL R+ + L +N L EG ++G+D+YMN+VL EE + TR+
Sbjct: 1 MTLPLKMLENFLN--KRISLLLKDNRVL--EGKLVGYDDYMNMVLMDTEE-KTEEMTRR- 54
Query: 75 LGTIMLKGDNI 85
LGT++L+G+N+
Sbjct: 55 LGTVILRGNNV 65
>gi|317420150|emb|CBN82186.1| U6 snRNA-associated Sm-like protein LSm5 [Dicentrarchus labrax]
Length = 91
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
P + P+ L+ + + +R I + + I G +LGFD+++N+VLE E+ I
Sbjct: 4 TPATNPSQLLPLELVDKCIGSR----IHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEI 59
Query: 68 KSKTRK--ALGTIMLKGDNITLI 88
+ R+ L I+L G+NIT++
Sbjct: 60 TPEGRRITKLDQILLNGNNITML 82
>gi|229366148|gb|ACQ58054.1| U6 snRNA-associated Sm-like protein LSm5 [Anoplopoma fimbria]
Length = 91
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
P + P+ L+ + + +R I + + I G +LGFD+++N+VLE E+ I
Sbjct: 4 TPTTNPSQLLPLELVDKCIGSR----IHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEI 59
Query: 68 KSKTRK--ALGTIMLKGDNITLI 88
+ R+ L I+L G+NIT++
Sbjct: 60 TPEGRRITKLDQILLNGNNITML 82
>gi|355571227|ref|ZP_09042479.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
gi|354825615|gb|EHF09837.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
Length = 78
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 48/77 (62%), Gaps = 8/77 (10%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY--NIKSKTR 72
+V PI +F + +R V+I ++ +++G ++ DEY+NI ++ EY N++ +T
Sbjct: 5 IVLPIKKVFSLVDSRIIVEI---KDDQRKLQGRLVAVDEYLNIHMDDTTEYVNNVRGRT- 60
Query: 73 KALGTIMLKGDNITLIQ 89
LGT++++G+NI IQ
Sbjct: 61 --LGTVVIRGNNILSIQ 75
>gi|403221959|dbj|BAM40091.1| small nuclear ribonucleoprotein associated protein b [Theileria
orientalis strain Shintoku]
Length = 153
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 13/77 (16%)
Query: 30 SRVQIWLYENV------NLRIEGHILGFDEYMNIVLESAEEYNI-------KSKTRKALG 76
+R+Q WL NV N + G ++ FD +MN+VL EE+ + +++ ++ LG
Sbjct: 6 TRMQHWLQYNVRVTLKDNRKFVGTLVAFDRHMNLVLSDCEEFRMTLGKDKNRTEIKRTLG 65
Query: 77 TIMLKGDNITLIQNLNP 93
++L+G+NI +P
Sbjct: 66 FVLLRGENIVSFTAKSP 82
>gi|395334578|gb|EJF66954.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 85
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI--KSKTRK 73
+ P+ LI R + +R IW+ + G +LGFD+++N+VLE EY + K +
Sbjct: 5 ILPLELIDRCIGSR----IWVIMKNDREFTGTLLGFDDFVNMVLEDVTEYETTPQGKKKT 60
Query: 74 ALGTIMLKGDNITLI 88
L +L G+NI ++
Sbjct: 61 TLNQTLLNGNNICML 75
>gi|296805413|ref|XP_002843531.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
gi|238844833|gb|EEQ34495.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
Length = 84
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI R + ++ IW+ + G +LGFD+Y+N+VLE E++ K L
Sbjct: 7 PLELIDRCVGSK----IWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYSGGQTK-LSK 61
Query: 78 IMLKGDNITLI 88
I+L G+N+ ++
Sbjct: 62 ILLNGNNVCML 72
>gi|259484847|tpe|CBF81418.1| TPA: small nuclear ribonucleoprotein (LSM5), putative
(AFU_orthologue; AFUA_7G04280) [Aspergillus nidulans
FGSC A4]
Length = 129
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 8 APKVQKVMVQ--PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY 65
+P K+ Q P+ LI + + +R IW+ + G +LGFD+Y+N+VLE E+
Sbjct: 41 SPAYPKMASQLLPLELIDKCVGSR----IWIIMKNDKEFSGTLLGFDDYVNMVLEDVTEF 96
Query: 66 NIKSKTRKALGTIMLKGDNITLI 88
+ K L I+L G+NI ++
Sbjct: 97 DYTGAQVK-LPKILLNGNNICML 118
>gi|45201226|ref|NP_986796.1| AGR130Wp [Ashbya gossypii ATCC 10895]
gi|44986080|gb|AAS54620.1| AGR130Wp [Ashbya gossypii ATCC 10895]
gi|374110045|gb|AEY98950.1| FAGR130Wp [Ashbya gossypii FDAG1]
Length = 80
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT-RKA 74
V P+ +I R + IW+ N G ++GFD+++N+V+E EY+ + ++
Sbjct: 3 VLPLEIIDRAINQ----PIWVLLTSNREFTGTLVGFDDFVNVVIEDVVEYDAPDRAVKRH 58
Query: 75 LGTIMLKGDNITLI 88
G ++L G+NIT++
Sbjct: 59 PGRMLLSGNNITVL 72
>gi|443896082|dbj|GAC73426.1| U6 snRNA-associated Sm-like protein [Pseudozyma antarctica T-34]
Length = 103
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK---A 74
P+ LI + + + IW+ G +LGFD+Y+N+VLE EY +K
Sbjct: 24 PLELIDKCIGS----SIWVIMKSEREFSGTLLGFDDYVNMVLEDVTEYETAQDGKKKKTK 79
Query: 75 LGTIMLKGDNITLI 88
LG +L G+NI ++
Sbjct: 80 LGQTLLNGNNICML 93
>gi|310792345|gb|EFQ27872.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 82
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + +R IW+ + G +LGFD+Y+N+VLE E++ K L
Sbjct: 7 PLELIDKCVGSR----IWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYSGNHTK-LSK 61
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 62 ILLNGNNICML 72
>gi|403166044|ref|XP_003325954.2| U6 snRNA-associated Sm-like protein LSm5 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|375166048|gb|EFP81535.2| U6 snRNA-associated Sm-like protein LSm5 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 128
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P+ LI R + +R IW+ G +LGFD+Y+N+VLE E+ ++ +K L
Sbjct: 7 PLELIDRCIGSR----IWVIMKTGREFTGKLLGFDDYVNMVLEDVTEFETTAEGQKVTNL 62
Query: 76 GTIMLKGDNITLIQNLNP 93
+L G+ I ++ P
Sbjct: 63 KQTLLNGNQICMVSGSIP 80
>gi|19074021|ref|NP_584627.1| SMALL NUCLEAR RIBONUCLEOPROTEIN E [Encephalitozoon cuniculi GB-M1]
Length = 111
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 15/83 (18%)
Query: 6 KMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY 65
KM +++ V+ P+ I+ FL V+IW +++ + +G I+GFDEYMN+V++
Sbjct: 38 KMGGELRSVL--PLEKIYDFLSRSIDVEIW-EKDMGAKHKGRIVGFDEYMNVVVDGET-- 92
Query: 66 NIKSKTRKALGTIMLKGDNITLI 88
G +LKGD I I
Sbjct: 93 ----------GRYLLKGDCICAI 105
>gi|324529784|gb|ADY49042.1| U6 snRNA-associated Sm-like protein LSm5 [Ascaris suum]
Length = 94
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 4 GFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
G + + P+ L+ + + +R IW+ I G + GFD+Y+N+VLE
Sbjct: 3 GMASSTATNPSTLLPLELVDKCIGSR----IWVIMKGEKEIVGTLTGFDDYVNMVLEDVV 58
Query: 64 EY--NIKSKTRKALGTIMLKGDNITLI 88
EY + K L TI+L G++IT++
Sbjct: 59 EYENTVDGKRVTKLDTILLNGNHITML 85
>gi|225433436|ref|XP_002285668.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 1
[Vitis vinifera]
gi|297741927|emb|CBI33362.3| unnamed protein product [Vitis vinifera]
Length = 87
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P LI R + ++ IW+ + + G + GFD Y+N+VLE EY I S+ R+ L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGRRITKL 65
Query: 76 GTIMLKGDNIT-LIQNLNPD 94
I+L G+NI L+ +PD
Sbjct: 66 DQILLNGNNIAILVPGGSPD 85
>gi|392571152|gb|EIW64324.1| like-Sm ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 85
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ LI R + +R IW+ G +LGFD+++N+VLE EY + RK L
Sbjct: 7 PLELIDRCIGSR----IWVIMKSEREFTGTLLGFDDFVNMVLEDVTEYEHTPQGRKKTKL 62
Query: 76 GTIMLKGDNITLI 88
+L G+NI ++
Sbjct: 63 NQTLLNGNNICML 75
>gi|407921630|gb|EKG14771.1| hypothetical protein MPH_08046 [Macrophomina phaseolina MS6]
Length = 83
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + ++ IW+ + G +LGFD+Y+N+VLE E++ + K L
Sbjct: 7 PLELIDKCVGSK----IWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYQGNQTK-LSK 61
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 62 ILLNGNNICML 72
>gi|392341168|ref|XP_003754272.1| PREDICTED: hypothetical protein LOC685221 [Rattus norvegicus]
gi|392348953|ref|XP_002729703.2| PREDICTED: hypothetical protein LOC685221 [Rattus norvegicus]
Length = 94
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 5/74 (6%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLR-IEGHILGFDEYMNIVLESAEEYNIKSKTRK--A 74
P+ L+ + + SR+ I + + ++ I G +LGFD+++N+VLE E+ I + R+
Sbjct: 14 PLELVDKCIG--SRIPIVMKSDKEIKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITK 71
Query: 75 LGTIMLKGDNITLI 88
L I+L G+NIT++
Sbjct: 72 LDQILLNGNNITML 85
>gi|320101466|ref|YP_004177058.1| LSM family small nuclear ribonucleoprotein [Desulfurococcus
mucosus DSM 2162]
gi|319753818|gb|ADV65576.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
mucosus DSM 2162]
Length = 75
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 32 VQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNL 91
V I ++V+LR G + FD+++NIVL+ EE RK LGT++++GD + LI L
Sbjct: 17 VLIKTKDSVSLR--GKLRSFDQHLNIVLDDTEEIRGDGSVRK-LGTVVIRGDTVVLISPL 73
Query: 92 N 92
+
Sbjct: 74 S 74
>gi|261245080|ref|NP_001140132.1| U6 snRNA-associated Sm-like protein LSm5 [Salmo salar]
gi|221220780|gb|ACM09051.1| U6 snRNA-associated Sm-like protein LSm5 [Salmo salar]
gi|221222120|gb|ACM09721.1| U6 snRNA-associated Sm-like protein LSm5 [Salmo salar]
gi|225715330|gb|ACO13511.1| U6 snRNA-associated Sm-like protein LSm5 [Esox lucius]
Length = 91
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
P + P+ L+ + + SR+ I + + I G +LGFD+++N+VLE E+ I
Sbjct: 4 TPATNPSQLLPLELVDKCIG--SRIHIVMKNDK--EIVGTLLGFDDFVNMVLEDVTEFEI 59
Query: 68 KSKTRK--ALGTIMLKGDNITLI 88
+ R+ L I+L G+NIT++
Sbjct: 60 TPEGRRITKLDQILLNGNNITML 82
>gi|391338472|ref|XP_003743582.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Metaseiulus occidentalis]
Length = 83
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P+ LI + + SR+ I + + L G +LGFD+Y+N+VLE EY S R+ L
Sbjct: 6 PLELIDKCIG--SRIHIIMKNDKELV--GTLLGFDDYVNMVLEDVTEYENSSDGRRVTKL 61
Query: 76 GTIMLKGDNITLI 88
I+L G NIT++
Sbjct: 62 DQIILNGSNITMM 74
>gi|313240518|emb|CBY32850.1| unnamed protein product [Oikopleura dioica]
Length = 86
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + SR+ I + + I G +LGFDE++N+VLE EY S +K L
Sbjct: 7 PLELVDKCIG--SRIHIIMRNDK--EIVGTLLGFDEFVNMVLEDVTEYEATSDGKKITKL 62
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 63 EQILLNGNNITML 75
>gi|440797084|gb|ELR18179.1| small nuclear ribonucleoprotein G, putative [Acanthamoeba
castellanii str. Neff]
Length = 76
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNL 91
N N R+ G + GFD++MN+VLE E + S + LG ++++G+++ LI+ L
Sbjct: 22 NANRRVSGILRGFDQFMNLVLEDTVE-EVSSTEKNELGMVVIRGNSVILIEPL 73
>gi|380474440|emb|CCF45778.1| U6 snRNA-associated Sm-like protein LSm5 [Colletotrichum
higginsianum]
Length = 82
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + +R IW+ + G +LGFD+Y+N+VLE E++ K L
Sbjct: 7 PLELIDKCVGSR----IWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYSGNHTK-LPK 61
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 62 ILLNGNNICML 72
>gi|16081975|ref|NP_394385.1| hypothetical protein Ta0927 [Thermoplasma acidophilum DSM 1728]
gi|10640204|emb|CAC12056.1| hypothetical protein [Thermoplasma acidophilum]
Length = 67
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 40/58 (68%), Gaps = 4/58 (6%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
RV + L +N L EG + GFDEYMN+VL+ +E N ++ +RK LGT++++G N+ I
Sbjct: 11 RVSLLLKDNRVL--EGVLTGFDEYMNMVLDDVDE-NSENVSRK-LGTVVVRGSNVVRI 64
>gi|170593543|ref|XP_001901523.1| U6 snRNA-associated Sm-like protein LSm5 [Brugia malayi]
gi|312071704|ref|XP_003138731.1| hypothetical protein LOAG_03146 [Loa loa]
gi|158590467|gb|EDP29082.1| U6 snRNA-associated Sm-like protein LSm5, putative [Brugia
malayi]
gi|402593447|gb|EJW87374.1| small nuclear ribonucleoprotein [Wuchereria bancrofti]
Length = 91
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY--NIKSKTRKAL 75
P+ L+ + + +R IW+ I G + GFD+Y+N+VLE EY + K L
Sbjct: 14 PLELVDKCIGSR----IWVIMKGEKEIVGTLTGFDDYVNMVLEDVVEYENTVDGKRVTKL 69
Query: 76 GTIMLKGDNITLI 88
TI+L G++IT++
Sbjct: 70 DTILLNGNHITML 82
>gi|395517528|ref|XP_003762928.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Sarcophilus harrisii]
Length = 140
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
V + + P L+ + + +R I + + I G +LGFD+++N+VLE E+ I
Sbjct: 55 PVTRSVSAPPELVDKCIGSR----IHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITP 110
Query: 70 KTRK--ALGTIMLKGDNITLI 88
+ R+ L I+L G+NIT++
Sbjct: 111 EGRRITKLDQILLNGNNITML 131
>gi|313213177|emb|CBY37031.1| unnamed protein product [Oikopleura dioica]
gi|313226437|emb|CBY21582.1| unnamed protein product [Oikopleura dioica]
Length = 86
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + SR+ I + + I G +LGFDE++N+VLE EY S +K L
Sbjct: 7 PLELVDKCIG--SRIHIIMRNDK--EIVGTLLGFDEFVNMVLEDVTEYEATSDGKKITKL 62
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 63 EQILLNGNNITML 75
>gi|432929710|ref|XP_004081239.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Oryzias
latipes]
Length = 91
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + +R I + + I G +LGFD+++N+VLE E+ I + R+ L
Sbjct: 14 PLELVDKCIGSR----IHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 70 DQILLNGNNITML 82
>gi|58258057|ref|XP_566441.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57222578|gb|AAW40622.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 216
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK--TRK 73
+ P+ L+ R + + IW+ G ++GFD+Y+N+VL+ +EY + + T
Sbjct: 5 ILPLELVDRCIGS----PIWVLMKNEREFTGTLMGFDDYVNMVLKDVKEYEVTASGITET 60
Query: 74 ALGTIMLKGDNITLIQN 90
LG +L G+NI +++
Sbjct: 61 DLGDTLLNGNNIAMVRT 77
>gi|70987204|ref|XP_749081.1| small nuclear ribonucleoprotein (LSM5) [Aspergillus fumigatus
Af293]
gi|66846711|gb|EAL87043.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
fumigatus Af293]
gi|159123148|gb|EDP48268.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
fumigatus A1163]
Length = 83
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + +R IW+ + G +LGFD+Y+N+VLE E++ S + L
Sbjct: 7 PLELIDKCVGSR----IWVIMKGDKEFSGTLLGFDDYVNMVLEDVTEFDY-SGAQVKLPK 61
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 62 ILLNGNNICML 72
>gi|197129592|gb|ACH46090.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
Length = 91
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + +R I + + +I G +LGFD+++N+VLE E+ I + R+ L
Sbjct: 14 PLELVDKCIGSR----IHIVMKSDKQIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 70 DQILLNGNNITML 82
>gi|393912158|gb|EFO25335.2| hypothetical protein LOAG_03146 [Loa loa]
Length = 111
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY--NIKSKTRKAL 75
P+ L+ + + +R IW+ I G + GFD+Y+N+VLE EY + K L
Sbjct: 34 PLELVDKCIGSR----IWVIMKGEKEIVGTLTGFDDYVNMVLEDVVEYENTVDGKRVTKL 89
Query: 76 GTIMLKGDNITLI 88
TI+L G++IT++
Sbjct: 90 DTILLNGNHITML 102
>gi|302909361|ref|XP_003050056.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730993|gb|EEU44343.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 83
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + +R IW+ + G +LGFD+Y+N+VLE E++ K L
Sbjct: 7 PLELIDKCVGSR----IWVIMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYSGNHTK-LPK 61
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 62 ILLNGNNICML 72
>gi|124028416|ref|YP_001013736.1| putative snRNP Sm protein [Hyperthermus butylicus DSM 5456]
gi|123979110|gb|ABM81391.1| putative snRNP Sm protein [Hyperthermus butylicus DSM 5456]
Length = 77
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
+ G + +D+++N+VLE AEE +TRK LGTI+++GD + LI
Sbjct: 27 VRGRLKSYDQHLNLVLEDAEEIYEDGRTRK-LGTIVIRGDTVLLI 70
>gi|348503608|ref|XP_003439356.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
1 [Oreochromis niloticus]
gi|348503610|ref|XP_003439357.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
2 [Oreochromis niloticus]
Length = 88
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + +R I + + I G +LGFD+++N+VLE E+ I + R+ L
Sbjct: 11 PLELVDKCIGSR----IHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 66
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 67 DQILLNGNNITML 79
>gi|134105981|ref|XP_778001.1| hypothetical protein CNBA0080 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260704|gb|EAL23354.1| hypothetical protein CNBA0080 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 216
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK--TRK 73
+ P+ L+ R + + IW+ G ++GFD+Y+N+VL+ +EY + + T
Sbjct: 5 ILPLELVDRCIGS----PIWVLMKNEREFTGTLMGFDDYVNMVLKDVKEYEVTASGITET 60
Query: 74 ALGTIMLKGDNITLIQN 90
LG +L G+NI +++
Sbjct: 61 DLGDTLLNGNNIAMVRT 77
>gi|225710006|gb|ACO10849.1| U6 snRNA-associated Sm-like protein LSm5 [Caligus rogercresseyi]
Length = 93
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 6 KMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY 65
+ P + P+ L+ R + +R I + + I G +LGFD+++N+VLE E+
Sbjct: 3 SLPPAPNPSTILPLELVDRAIGSR----IHIIMKGDKEIVGTLLGFDDFVNMVLEDVTEF 58
Query: 66 NIKSKTRKA--LGTIMLKGDNITLI 88
S+ ++ L I+L G+NIT++
Sbjct: 59 ESTSEGQRVSKLDQILLNGNNITML 83
>gi|442748493|gb|JAA66406.1| Putative u6 snrna-associated sm-like protein [Ixodes ricinus]
Length = 90
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 9 PKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIK 68
P V + P+ LI + + S++ I + + I G +LGFD+++N+VLE EY
Sbjct: 4 PPVNPSSLLPLELIDKCIG--SKIHIIMKSDK--EIVGTLLGFDDFVNMVLEDVTEYEST 59
Query: 69 SKTRK--ALGTIMLKGDNITLI 88
+ R+ L I+L G+NIT++
Sbjct: 60 PEGRRITKLDQILLNGNNITMM 81
>gi|392512547|emb|CAD25131.2| SMALL NUCLEAR RIBONUCLEOPROTEIN E [Encephalitozoon cuniculi
GB-M1]
Length = 73
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 13/73 (17%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKAL 75
V P+ I+ FL V+IW +++ + +G I+GFDEYMN+V++
Sbjct: 8 VLPLEKIYDFLSRSIDVEIW-EKDMGAKHKGRIVGFDEYMNVVVDG------------ET 54
Query: 76 GTIMLKGDNITLI 88
G +LKGD I I
Sbjct: 55 GRYLLKGDCICAI 67
>gi|340522327|gb|EGR52560.1| predicted protein [Trichoderma reesei QM6a]
Length = 84
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + +R IW+ + G +LGFD+Y+N+VLE E++ K L
Sbjct: 7 PLELIDKCVGSR----IWVIMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYTGNHTK-LPK 61
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 62 ILLNGNNICML 72
>gi|315045688|ref|XP_003172219.1| small nuclear ribonucleoprotein [Arthroderma gypseum CBS 118893]
gi|311342605|gb|EFR01808.1| small nuclear ribonucleoprotein [Arthroderma gypseum CBS 118893]
Length = 84
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + ++ IW+ + G +LGFD+Y+N+VLE E++ K L
Sbjct: 7 PLELIDKCVGSK----IWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYSGGQTK-LSK 61
Query: 78 IMLKGDNITLI 88
I+L G+N+ ++
Sbjct: 62 ILLNGNNVCML 72
>gi|393247655|gb|EJD55162.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 85
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI---KSKTR 72
+ P+ LI R + +R IW+ G +LGFD+++N+VLE EY S+ +
Sbjct: 5 ILPLELIDRCIGSR----IWVVMKTEREFTGTLLGFDDFVNMVLEDVTEYETLPDGSRKK 60
Query: 73 KALGTIMLKGDNITLI 88
L +L G+NI ++
Sbjct: 61 TKLRQTLLNGNNICIL 76
>gi|308160638|gb|EFO63114.1| SnRNP Sm-like protein, putative [Giardia lamblia P15]
Length = 84
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
M P + + S V +W + + + G +G DE+ N+VL+ A I +
Sbjct: 1 MPSPALELCTLARANSHVTVWPVDPHSGVLTGTCVGLDEFFNVVLQDA-TLEIPGSDPTS 59
Query: 75 LGTIMLKGDNITLIQNLNPDEVKV 98
L ++++ D I +I + P E V
Sbjct: 60 LPLVLVRADTIAMIHTITPKESPV 83
>gi|388507376|gb|AFK41754.1| unknown [Lotus japonicus]
Length = 87
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P LI R + ++ IW+ + + G + GFD Y+N+VLE EY I ++ R+ L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKL 65
Query: 76 GTIMLKGDNIT-LIQNLNPD 94
I+L G+NI L+ +PD
Sbjct: 66 DQILLNGNNIAILVPGGSPD 85
>gi|449468622|ref|XP_004152020.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Cucumis
sativus]
gi|449522508|ref|XP_004168268.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Cucumis
sativus]
Length = 87
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P LI R + ++ IW+ + + G + GFD Y+N+VLE EY I ++ R+ L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKL 65
Query: 76 GTIMLKGDNIT-LIQNLNPD 94
I+L G+NI L+ +PD
Sbjct: 66 DQILLNGNNIAILVPGGSPD 85
>gi|449283162|gb|EMC89854.1| U6 snRNA-associated Sm-like protein LSm5, partial [Columba livia]
Length = 82
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + SR+ I + + I G +LGFD+++N+VLE E+ I + R+ L
Sbjct: 14 PLELVDKCIG--SRIHIVMKSDK--EIVGTLLGFDDFVNMVLEDVTEFEIPPEGRRITKL 69
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 70 DQILLNGNNITMV 82
>gi|385805901|ref|YP_005842299.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
gi|383795764|gb|AFH42847.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
Length = 76
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 41 NLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
N + G + +D ++NIVLE AEE + RK LGT++++GDN+ +I
Sbjct: 24 NKEVRGKLKSYDHHLNIVLEDAEELFPDGQARK-LGTVIIRGDNVIIIS 71
>gi|358392255|gb|EHK41659.1| hypothetical protein TRIATDRAFT_250596 [Trichoderma atroviride
IMI 206040]
Length = 84
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + +R IW+ + G ++GFD+Y+N+VLE E++ K L
Sbjct: 7 PLELIDKCVGSR----IWVVMKGDKEFSGTLMGFDDYVNMVLEDVTEFDYSGNHTK-LPK 61
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 62 ILLNGNNICML 72
>gi|13541906|ref|NP_111594.1| small nuclear ribonucleoprotein (snRNP)-like protein
[Thermoplasma volcanium GSS1]
gi|14325338|dbj|BAB60242.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
Length = 71
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 6/74 (8%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
M+ P+ L+ + RV + L +N L EG + G+D+YMN+VL+ +E N ++ +RK
Sbjct: 1 MIMPMKLLEESVN--KRVSLLLKDNRVL--EGTLTGYDDYMNMVLDDVDE-NSENVSRK- 54
Query: 75 LGTIMLKGDNITLI 88
LGT++++G N+ I
Sbjct: 55 LGTVVIRGSNVVRI 68
>gi|346325284|gb|EGX94881.1| small nuclear ribonucleoprotein [Cordyceps militaris CM01]
Length = 83
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + +R IW+ G ++GFD+Y+N+VLE E++ + L
Sbjct: 7 PLELIDKCVGSR----IWVIMKGEKEFSGTLVGFDDYVNMVLEDVTEFSDYTGNHTKLPK 62
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 63 ILLNGNNICML 73
>gi|320032480|gb|EFW14433.1| small nuclear ribonucleoprotein [Coccidioides posadasii str.
Silveira]
Length = 84
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + ++ IW+ + G +LGFD+Y+N+VLE E++ + K L
Sbjct: 7 PLELIDKCVGSK----IWVVMKGDREFSGTLLGFDDYVNMVLEDVTEFDYTAAQTK-LPK 61
Query: 78 IMLKGDNITLI 88
I+L G+N+ ++
Sbjct: 62 ILLNGNNVCML 72
>gi|145499845|ref|XP_001435907.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124403043|emb|CAK68510.1| unnamed protein product [Paramecium tetraurelia]
Length = 138
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 8/61 (13%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK------TRKALGTIMLKGDN 84
RV+I L + L G L FD+++N++L EEY I+ + T++ LG I+++GDN
Sbjct: 14 RVRITLGDGRML--VGTFLAFDKHLNVILSECEEYRIRKQGIHEIETKRTLGMIIVRGDN 71
Query: 85 I 85
I
Sbjct: 72 I 72
>gi|449295361|gb|EMC91383.1| hypothetical protein BAUCODRAFT_127288 [Baudoinia compniacensis
UAMH 10762]
Length = 83
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI R + + IW+ + G +LGFD+++N+VLE EY+ S + L
Sbjct: 7 PLELIDRCVGS----PIWVIMKGDKEFSGTLLGFDDFVNMVLEDVTEYDY-SGAQTKLPK 61
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 62 ILLNGNNICML 72
>gi|350539912|ref|NP_001232310.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
gi|197129593|gb|ACH46091.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
gi|197129594|gb|ACH46092.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
gi|197129595|gb|ACH46093.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
gi|197129831|gb|ACH46329.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
gi|197129908|gb|ACH46406.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
Length = 91
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + +R I + + I G +LGFD+++N+VLE E+ I + R+ L
Sbjct: 14 PLELVDKCIGSR----IHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 70 DQILLNGNNITML 82
>gi|315425372|dbj|BAJ47038.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426552|dbj|BAJ48182.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426610|dbj|BAJ48238.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|343485302|dbj|BAJ50956.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
Length = 74
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
+ G + G+D++MNIVLE +E I T+ LGTI+++GD+I +I
Sbjct: 28 LRGLLKGYDQHMNIVLEDTDEL-IDENTQNKLGTIVVRGDSIVMIS 72
>gi|147901169|ref|NP_001087187.1| U6 snRNA-associated Sm-like protein LSm5 [Xenopus laevis]
gi|51873770|gb|AAH78466.1| MGC85219 protein [Xenopus laevis]
Length = 91
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + +R I + + I G +LGFD+++N+VLE E+ I + R+ L
Sbjct: 14 PLELVDKCIGSR----IHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 70 DQILLNGNNITML 82
>gi|213982795|ref|NP_001135569.1| U6 snRNA-associated Sm-like protein LSm5 [Xenopus (Silurana)
tropicalis]
gi|195539827|gb|AAI68072.1| Unknown (protein for MGC:185877) [Xenopus (Silurana) tropicalis]
Length = 91
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + +R I + + I G +LGFD+++N+VLE E+ I + R+ L
Sbjct: 14 PLELVDKCIGSR----IHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 70 DQILLNGNNITML 82
>gi|410909464|ref|XP_003968210.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Takifugu rubripes]
gi|47225103|emb|CAF98730.1| unnamed protein product [Tetraodon nigroviridis]
Length = 88
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + +R I + + I G +LGFD+++N+VLE E+ + + R+ L
Sbjct: 11 PLELVDKCIGSR----IHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEVTPEGRRITKL 66
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 67 DQILLNGNNITML 79
>gi|145491875|ref|XP_001431936.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399043|emb|CAK64538.1| unnamed protein product [Paramecium tetraurelia]
Length = 126
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 8/61 (13%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK------TRKALGTIMLKGDN 84
RV+I L + L G L FD+++N++L EEY I+ + T++ LG I+++GDN
Sbjct: 14 RVRITLGDGRML--VGTFLAFDKHLNVILSECEEYRIRKQGIHEIETKRTLGMIIVRGDN 71
Query: 85 I 85
I
Sbjct: 72 I 72
>gi|401413338|ref|XP_003886116.1| putative snRNP protein Lsm5 [Neospora caninum Liverpool]
gi|325120536|emb|CBZ56090.1| putative snRNP protein Lsm5 [Neospora caninum Liverpool]
Length = 118
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT--RKAL 75
P+ L+ + + +R +W+ + + G + GFD+++N+VL+ EY + L
Sbjct: 25 PLALVDKCIGSR----MWIIMKGDKELAGTLRGFDDFVNMVLDDVTEYTFTPTGVKKTKL 80
Query: 76 GTIMLKGDNIT-LIQNLNPDEVK 97
+I+L G+NIT L+ +P+E +
Sbjct: 81 QSILLNGNNITMLVPGGDPEEAQ 103
>gi|224059779|ref|XP_002299989.1| predicted protein [Populus trichocarpa]
gi|224103927|ref|XP_002313247.1| predicted protein [Populus trichocarpa]
gi|118484238|gb|ABK93999.1| unknown [Populus trichocarpa]
gi|222847247|gb|EEE84794.1| predicted protein [Populus trichocarpa]
gi|222849655|gb|EEE87202.1| predicted protein [Populus trichocarpa]
Length = 88
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P LI R + ++ IW+ + + G + GFD Y+N+VLE EY I ++ R+ L
Sbjct: 11 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKL 66
Query: 76 GTIMLKGDNIT-LIQNLNPD 94
I+L G+NI L+ +PD
Sbjct: 67 DQILLNGNNIAILVPGGSPD 86
>gi|149025174|gb|EDL81541.1| rCG64141 [Rattus norvegicus]
Length = 94
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNL-RIEGHILGFDEYMNIVLESAEEYNIKSKTRK--A 74
P+ L+ + + SR+ I + + + I G +LGFD+++N+VLE E+ I + R+
Sbjct: 14 PLELVDKCIG--SRIPIVMKSDKEIVEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITK 71
Query: 75 LGTIMLKGDNITLI 88
L I+L G+NIT++
Sbjct: 72 LDQILLNGNNITML 85
>gi|121711305|ref|XP_001273268.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
clavatus NRRL 1]
gi|119401419|gb|EAW11842.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
clavatus NRRL 1]
Length = 83
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + +R IW+ + G +LGFD+Y+N+VLE E++ S + L
Sbjct: 7 PLELIDKCVGSR----IWVIMKGDKEFSGTLLGFDDYVNMVLEDVTEFDY-SGAQIKLNK 61
Query: 78 IMLKGDNITLI 88
I+L G+N+ ++
Sbjct: 62 ILLNGNNVCML 72
>gi|317034233|ref|XP_001396223.2| U6 snRNA-associated Sm-like protein LSm5 [Aspergillus niger CBS
513.88]
gi|358373053|dbj|GAA89653.1| small nuclear ribonucleoprotein [Aspergillus kawachii IFO 4308]
Length = 83
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + +R IW+ + G +LGFD+Y+N+VLE E++ S ++ L
Sbjct: 7 PLELIDKCVGSR----IWVIMKNDKEFAGTLLGFDDYVNMVLEDVTEFDY-SGSQVKLPK 61
Query: 78 IMLKGDNITLI 88
I+L G+N+ ++
Sbjct: 62 ILLNGNNVCML 72
>gi|326922224|ref|XP_003207351.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Meleagris gallopavo]
gi|363730150|ref|XP_418849.3| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Gallus
gallus]
Length = 91
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + SR+ I + + I G +LGFD+++N+VLE E+ I + R+ L
Sbjct: 14 PLELVDKCIG--SRIHIVMKSDK--EIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 70 DQILLNGNNITML 82
>gi|6912488|ref|NP_036454.1| U6 snRNA-associated Sm-like protein LSm5 isoform a [Homo sapiens]
gi|13384942|ref|NP_079796.1| U6 snRNA-associated Sm-like protein LSm5 [Mus musculus]
gi|114053307|ref|NP_001040018.1| U6 snRNA-associated Sm-like protein LSm5 [Bos taurus]
gi|157822947|ref|NP_001100759.1| U6 snRNA-associated Sm-like protein LSm5 [Rattus norvegicus]
gi|197101673|ref|NP_001126628.1| U6 snRNA-associated Sm-like protein LSm5 [Pongo abelii]
gi|383873354|ref|NP_001244745.1| U6 snRNA-associated Sm-like protein LSm5 [Macaca mulatta]
gi|55628382|ref|XP_519030.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 3
[Pan troglodytes]
gi|73976577|ref|XP_854477.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Canis lupus
familiaris]
gi|149705702|ref|XP_001500867.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like [Equus
caballus]
gi|291394638|ref|XP_002713789.1| PREDICTED: LSM5 homolog, U6 small nuclear RNA associated
[Oryctolagus cuniculus]
gi|296209016|ref|XP_002751358.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Callithrix jacchus]
gi|301772952|ref|XP_002921890.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Ailuropoda melanoleuca]
gi|332242762|ref|XP_003270553.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 1
[Nomascus leucogenys]
gi|335305486|ref|XP_003360223.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Sus
scrofa]
gi|344270397|ref|XP_003407031.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Loxodonta africana]
gi|348568734|ref|XP_003470153.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Cavia
porcellus]
gi|395831025|ref|XP_003788612.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Otolemur garnettii]
gi|397527112|ref|XP_003833447.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Pan
paniscus]
gi|402863784|ref|XP_003896179.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
1 [Papio anubis]
gi|403278350|ref|XP_003930776.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Saimiri
boliviensis boliviensis]
gi|407262510|ref|XP_003946397.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Mus
musculus]
gi|410952602|ref|XP_003982968.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Felis catus]
gi|426227726|ref|XP_004007967.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Ovis aries]
gi|426355879|ref|XP_004045331.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
1 [Gorilla gorilla gorilla]
gi|426355881|ref|XP_004045332.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
2 [Gorilla gorilla gorilla]
gi|10720081|sp|Q9Y4Y9.3|LSM5_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|52783752|sp|P62322.2|LSM5_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|75054789|sp|Q5R628.3|LSM5_PONAB RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|116256439|sp|Q2HJH0.3|LSM5_BOVIN RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|5919151|gb|AAD56229.1|AF182291_1 U6 snRNA-associated Sm-like protein LSm5 [Homo sapiens]
gi|5262860|emb|CAB45868.1| Lsm5 protein [Homo sapiens]
gi|12844520|dbj|BAB26394.1| unnamed protein product [Mus musculus]
gi|12847199|dbj|BAB27475.1| unnamed protein product [Mus musculus]
gi|13543565|gb|AAH05938.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|38512042|gb|AAH61085.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|51105856|gb|EAL24440.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|55732167|emb|CAH92788.1| hypothetical protein [Pongo abelii]
gi|55930921|gb|AAH48459.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|88682880|gb|AAI05405.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Bos taurus]
gi|119614397|gb|EAW93991.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_b [Homo sapiens]
gi|124376122|gb|AAI32627.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|124376508|gb|AAI32629.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|148672763|gb|EDL04710.1| mCG13108, isoform CRA_a [Mus musculus]
gi|149033255|gb|EDL88056.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted), isoform CRA_c [Rattus norvegicus]
gi|208966684|dbj|BAG73356.1| LSM5 homolog, U6 small nuclear RNA associated [synthetic
construct]
gi|296488471|tpg|DAA30584.1| TPA: U6 snRNA-associated Sm-like protein LSm5 [Bos taurus]
gi|312153290|gb|ADQ33157.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[synthetic construct]
gi|355560708|gb|EHH17394.1| U6 snRNA-associated Sm-like protein LSm5 [Macaca mulatta]
gi|380811262|gb|AFE77506.1| U6 snRNA-associated Sm-like protein LSm5 isoform a [Macaca
mulatta]
gi|383417167|gb|AFH31797.1| U6 snRNA-associated Sm-like protein LSm5 isoform a [Macaca
mulatta]
gi|384941550|gb|AFI34380.1| U6 snRNA-associated Sm-like protein LSm5 isoform a [Macaca
mulatta]
gi|410223678|gb|JAA09058.1| LSM5 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410255044|gb|JAA15489.1| LSM5 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410354065|gb|JAA43636.1| LSM5 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|417395572|gb|JAA44840.1| Putative u6 snrna-associated sm-like protein [Desmodus rotundus]
gi|440911522|gb|ELR61182.1| U6 snRNA-associated Sm-like protein LSm5 [Bos grunniens mutus]
Length = 91
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + SR+ I + + I G +LGFD+++N+VLE E+ I + R+ L
Sbjct: 14 PLELVDKCIG--SRIHIVMKSDK--EIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 70 DQILLNGNNITML 82
>gi|261190750|ref|XP_002621784.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239591207|gb|EEQ73788.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239614892|gb|EEQ91879.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis ER-3]
gi|327352333|gb|EGE81190.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis ATCC
18188]
Length = 84
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + ++ IW+ + G +LGFD+Y+N+VLE E++ K L
Sbjct: 7 PLELIDKCVGSK----IWVVMKGDKEFAGTLLGFDDYVNMVLEDVTEFDYTGAQTK-LPK 61
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 62 ILLNGNNICML 72
>gi|398394357|ref|XP_003850637.1| hypothetical protein MYCGRDRAFT_81468 [Zymoseptoria tritici
IPO323]
gi|339470516|gb|EGP85613.1| hypothetical protein MYCGRDRAFT_81468 [Zymoseptoria tritici
IPO323]
Length = 81
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI R + + IW+ + G +LGFD+++N+VLE EY+ S + L
Sbjct: 7 PLELIDRCVGS----PIWVIMKGDKEFSGTLLGFDDFVNMVLEDVTEYDY-SGAQTKLPK 61
Query: 78 IMLKGDNIT-LIQNLNPDE 95
I+L G+N+ LI PD+
Sbjct: 62 ILLNGNNVAMLIPGGMPDQ 80
>gi|402590109|gb|EJW84040.1| hypothetical protein WUBG_05049 [Wuchereria bancrofti]
Length = 79
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
Q+ L N N + G + GFD +MNIV+E A E N+KS + +G ++++G++I +++
Sbjct: 16 QVDLKLNGNRSVSGILRGFDPFMNIVVEDAVE-NLKSGDKNEIGMVVIRGNSIVIME 71
>gi|388498294|gb|AFK37213.1| unknown [Medicago truncatula]
Length = 87
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P LI R + ++ IW+ + + G + GFD Y+N+VLE EY I ++ R+ L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKL 65
Query: 76 GTIMLKGDNIT-LIQNLNPD 94
I+L G+NI L+ +PD
Sbjct: 66 DQILLNGNNIAILVPGGSPD 85
>gi|429327489|gb|AFZ79249.1| small nuclear ribonucleoprotein-associated protein B, putative
[Babesia equi]
Length = 153
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 11/80 (13%)
Query: 30 SRVQIWLYENVNLRIE------GHILGFDEYMNIVLESAEEYNIK-----SKTRKALGTI 78
+R+Q WL V + ++ G ++ FD++MN+VL EE+ + + ++ LG I
Sbjct: 6 TRMQQWLQYTVRVTVKDGRKFVGTLIAFDKHMNLVLADCEEFRMTKGKEGKEIKRTLGFI 65
Query: 79 MLKGDNITLIQNLNPDEVKV 98
+L+G+NI P +
Sbjct: 66 LLRGENIVSFTAKAPPAASL 85
>gi|363753790|ref|XP_003647111.1| hypothetical protein Ecym_5554 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890747|gb|AET40294.1| hypothetical protein Ecym_5554 [Eremothecium cymbalariae
DBVPG#7215]
Length = 82
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 34 IWLYENVNLRIEGHILGFDEYMNIVLESAEEY-NIKSKTRKALGTIMLKGDNITLI 88
IW+ N G ++GFD+++N+V+E EY + + ++ G ++L G+NIT++
Sbjct: 20 IWILLTSNREFTGTLVGFDDFVNVVIEDVIEYEGVDKEVKRHHGKMLLSGNNITML 75
>gi|354485537|ref|XP_003504940.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Cricetulus griseus]
Length = 140
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 30 SRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--ALGTIMLKGDNITL 87
SR+ I + + I G +LGFD+++N+VLE E+ I + R+ L I+L G+NIT+
Sbjct: 73 SRIHIVMKSDKE--IVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITM 130
Query: 88 I 88
+
Sbjct: 131 L 131
>gi|389860536|ref|YP_006362775.1| Like-Sm ribonucleoprotein, core [Thermogladius cellulolyticus
1633]
gi|388525439|gb|AFK50637.1| Like-Sm ribonucleoprotein, core [Thermogladius cellulolyticus
1633]
Length = 76
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNP 93
I G + +D+++NIVL+ AEE +RK LGT++++GD + LI L
Sbjct: 28 IRGKLRSYDQHLNIVLDDAEEVRGDGSSRK-LGTLVIRGDTVVLISPLQA 76
>gi|378725612|gb|EHY52071.1| U6 snRNA-associated Sm-like protein LSm5 [Exophiala dermatitidis
NIH/UT8656]
Length = 84
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + +R IW+ + G +LGFD+Y+N+VLE E++ K L
Sbjct: 7 PLELIDKCVGSR----IWVVMKGDKDFAGTLLGFDDYVNMVLEDVIEFDYTGAQTK-LPK 61
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 62 ILLNGNNICML 72
>gi|154303271|ref|XP_001552043.1| predicted protein [Botryotinia fuckeliana B05.10]
gi|347841641|emb|CCD56213.1| similar to U6 snRNA-associated Sm-like protein LSm5 [Botryotinia
fuckeliana]
Length = 84
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + ++ IW+ + G + GFD+Y+N+VLE E++ +S ++ L
Sbjct: 7 PLELIDKCVGSK----IWVVMKGDKEFTGTLTGFDDYVNMVLEDVIEFDHQSGSQTKLPK 62
Query: 78 IMLKGDNITLI 88
I+L G+ I ++
Sbjct: 63 ILLNGNGIAML 73
>gi|281341468|gb|EFB17052.1| hypothetical protein PANDA_006654 [Ailuropoda melanoleuca]
Length = 30
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 50 GFDEYMNIVLESAEEYNIKSKTRKALG 76
GFDEYMN+VL+ AEE + K+K+RK LG
Sbjct: 1 GFDEYMNLVLDDAEEIHSKTKSRKQLG 27
>gi|116779179|gb|ABK21171.1| unknown [Picea sitchensis]
gi|116779217|gb|ABK21184.1| unknown [Picea sitchensis]
gi|224285498|gb|ACN40469.1| unknown [Picea sitchensis]
Length = 85
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P LI R + ++ IW+ + + G + GFD Y+N+VLE EY I S+ R+ L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGRRITKL 65
Query: 76 GTIMLKGDNITLI 88
I+L G+NI ++
Sbjct: 66 DQILLNGNNIAIL 78
>gi|109502984|ref|XP_001054331.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Rattus
norvegicus]
gi|392333476|ref|XP_003752904.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Rattus
norvegicus]
Length = 90
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + SR+ I + + + I G LGFD+++N+VLE E+ I + R+ L
Sbjct: 14 PLELVAKCIG--SRIHIVMKSDKD--IVGTPLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 70 DQILLNGNNITML 82
>gi|295657072|ref|XP_002789110.1| hypothetical protein PAAG_08979 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284564|gb|EEH40130.1| hypothetical protein PAAG_08979 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 84
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + ++ IW+ + G +LGFD+Y+N+VLE E++ K L
Sbjct: 7 PLELIDKCVGSK----IWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYTGAQTK-LPK 61
Query: 78 IMLKGDNITLI 88
I+L G+N+ ++
Sbjct: 62 ILLNGNNVCML 72
>gi|392867674|gb|EAS29072.2| U6 snRNA-associated Sm-like protein LSm5 [Coccidioides immitis
RS]
Length = 84
Score = 42.4 bits (98), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + ++ IW+ + G +LGFD+Y+N+VLE E++ K L
Sbjct: 7 PLELIDKCVGSK----IWVVMKGDREFSGTLLGFDDYVNMVLEDVTEFDYTGAQTK-LPK 61
Query: 78 IMLKGDNITLI 88
I+L G+N+ ++
Sbjct: 62 ILLNGNNVCML 72
>gi|291001751|ref|XP_002683442.1| predicted protein [Naegleria gruberi]
gi|284097071|gb|EFC50698.1| predicted protein [Naegleria gruberi]
Length = 89
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 10/59 (16%)
Query: 43 RIEGHILGFDEYMNIVLESA--------EEYNIKSKTRKALGTIMLKGDNITLIQNLNP 93
+EG ++GFD +MNI LE+A E N KT LGT++++G++I +++ L+P
Sbjct: 27 HVEGTMIGFDPFMNITLENAYDLTGFSKGEANTNEKTH--LGTVVVRGNSIEMMECLDP 83
>gi|268561698|ref|XP_002638393.1| C. briggsae CBR-LSM-5 protein [Caenorhabditis briggsae]
gi|341889312|gb|EGT45247.1| hypothetical protein CAEBREN_08263 [Caenorhabditis brenneri]
gi|341889389|gb|EGT45324.1| hypothetical protein CAEBREN_18101 [Caenorhabditis brenneri]
Length = 91
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY--NIKSKTRKAL 75
P+ LI + + ++ IW+ + I G + GFD+Y+N+VLE EY + K L
Sbjct: 14 PLELIDKCIGSK----IWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTAEGKRMTKL 69
Query: 76 GTIMLKGDNITLI 88
TI+L G++IT++
Sbjct: 70 DTILLNGNHITML 82
>gi|328856633|gb|EGG05753.1| hypothetical protein MELLADRAFT_87625 [Melampsora larici-populina
98AG31]
Length = 935
Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA- 74
+ P+ LI R + +R IW+ G +LGFD+Y+N+VLE EY ++ K
Sbjct: 857 ILPLELIDRCIGSR----IWVVMKTGREFTGKLLGFDDYVNMVLEDVTEYETTAEGHKIT 912
Query: 75 -LGTIMLKGDNITLI 88
L +L G+ I ++
Sbjct: 913 NLKQTLLNGNQICML 927
>gi|309241419|ref|XP_003115877.1| CRE-LSM-5 protein [Caenorhabditis remanei]
gi|308256412|gb|EFP00365.1| CRE-LSM-5 protein [Caenorhabditis remanei]
Length = 91
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY--NIKSKTRKAL 75
P+ LI + + ++ IW+ + I G + GFD+Y+N+VLE EY + K L
Sbjct: 14 PLELIDKCIGSK----IWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTAEGKRMTKL 69
Query: 76 GTIMLKGDNITLI 88
TI+L G++IT++
Sbjct: 70 DTILLNGNHITML 82
>gi|358389647|gb|EHK27239.1| hypothetical protein TRIVIDRAFT_73167 [Trichoderma virens Gv29-8]
Length = 84
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + ++ IW+ + G +LGFD+Y+N+VLE E++ K L
Sbjct: 7 PLELIDKCVGSK----IWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYSGNHTK-LPK 61
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 62 ILLNGNNICML 72
>gi|156937769|ref|YP_001435565.1| like-Sm ribonucleoprotein, core [Ignicoccus hospitalis KIN4/I]
gi|156566753|gb|ABU82158.1| Like-Sm ribonucleoprotein, core [Ignicoccus hospitalis KIN4/I]
Length = 73
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 17/90 (18%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
MA KVM + I +I L + + ++ G + FD ++NIVLE AEE
Sbjct: 1 MADTAHKVMAEAIG------------KIVLVKLRDGKVRGRLKTFDMHLNIVLEDAEE-- 46
Query: 67 IKSKTRKALGTIMLKGDNITLIQNLNPDEV 96
++ + LGTI+++GD + + +P EV
Sbjct: 47 VREDQTRPLGTILIRGDGVVFV---SPVEV 73
>gi|401825470|ref|XP_003886830.1| LSM domain-containing protein [Encephalitozoon hellem ATCC 50504]
gi|392997986|gb|AFM97849.1| LSM domain-containing protein [Encephalitozoon hellem ATCC 50504]
Length = 73
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 15/72 (20%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLE-SAEEYNIKSKTRKALG 76
P+ ++ FL + V+IW +++ + G I+GFDEYMN+V++ A+ Y
Sbjct: 10 PLEKLYDFLSKSTDVEIW-EKDIRTKHRGRIVGFDEYMNLVIDNGAKRY----------- 57
Query: 77 TIMLKGDNITLI 88
+LKGD + ++
Sbjct: 58 --LLKGDCVCVV 67
>gi|126465841|ref|YP_001040950.1| LSM family small nuclear ribonucleoprotein [Staphylothermus
marinus F1]
gi|126014664|gb|ABN70042.1| Small nuclear ribonucleoprotein, LSM family [Staphylothermus
marinus F1]
Length = 75
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
+ G + +D+++NIVL+ AEE TRK LGTI+++GD + LI
Sbjct: 27 VRGKLKSYDQHLNIVLDDAEEIKEDGSTRK-LGTIVIRGDTVILIS 71
>gi|296423698|ref|XP_002841390.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637628|emb|CAZ85581.1| unnamed protein product [Tuber melanosporum]
Length = 84
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ L+ + + +R IW+ + G ++GFD+Y+N+VLE EY + K L
Sbjct: 7 PLELVDKCVGSR----IWVVMKGDKEFSGTLVGFDDYVNMVLEDVTEYESTGEQVK-LKK 61
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 62 ILLNGNNICML 72
>gi|327304591|ref|XP_003236987.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
gi|326459985|gb|EGD85438.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
Length = 84
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + ++ IW+ + G +LGFD+Y+N+VLE E++ K L
Sbjct: 7 PLELIDKCVGSK----IWIVMKGDKEFCGTLLGFDDYVNMVLEDVTEFDYSGGQTK-LSK 61
Query: 78 IMLKGDNITLI 88
I+L G+N+ ++
Sbjct: 62 ILLNGNNVCML 72
>gi|403166042|ref|XP_003889979.1| U6 snRNA-associated Sm-like protein LSm5, variant [Puccinia
graminis f. sp. tritici CRL 75-36-700-3]
gi|375166047|gb|EHS63049.1| U6 snRNA-associated Sm-like protein LSm5, variant [Puccinia
graminis f. sp. tritici CRL 75-36-700-3]
Length = 84
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P+ LI R + +R IW+ G +LGFD+Y+N+VLE E+ ++ +K L
Sbjct: 7 PLELIDRCIGSR----IWVIMKTGREFTGKLLGFDDYVNMVLEDVTEFETTAEGQKVTNL 62
Query: 76 GTIMLKGDNITLI 88
+L G+ I ++
Sbjct: 63 KQTLLNGNQICML 75
>gi|336473000|gb|EGO61160.1| hypothetical protein NEUTE1DRAFT_116005 [Neurospora tetrasperma
FGSC 2508]
gi|350293750|gb|EGZ74835.1| putative U6 SNRNA-associated SM-LIKE protein LSM5 [Neurospora
tetrasperma FGSC 2509]
gi|380092260|emb|CCC10036.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 84
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + +R IW+ + G ++GFD+Y+N+VLE E++ K L
Sbjct: 7 PLELIDKCVGSR----IWVVMKGDKEFSGTLVGFDDYVNMVLEDVTEFDYSGNHTK-LKK 61
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 62 ILLNGNNICML 72
>gi|196001101|ref|XP_002110418.1| conserved hypothetical protein [Trichoplax adhaerens]
gi|190586369|gb|EDV26422.1| conserved hypothetical protein [Trichoplax adhaerens]
Length = 84
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P+ LI + + SR+ I + + + G +LGFD+++N+VLE EY + R+ L
Sbjct: 8 PLELIDKCIG--SRIHIIMKSDK--EVVGTLLGFDDFVNMVLEDVTEYETTADGRRVTKL 63
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 64 DQILLNGNNITMM 76
>gi|392597490|gb|EIW86812.1| like-Sm ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 84
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK-- 73
+ P+ LI R + ++ IW+ + G +LGFD+++N+VLE E+ I ++ K
Sbjct: 5 ILPLELIDRCIGSK----IWVVMKGDREFSGTLLGFDDFVNMVLEDVTEFEITAEGIKQT 60
Query: 74 ALGTIMLKGDNITLI 88
L +L G+NI ++
Sbjct: 61 KLSQTLLNGNNICML 75
>gi|340506197|gb|EGR32392.1| lsm5 protein, putative [Ichthyophthirius multifiliis]
Length = 83
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS--KTRK 73
+ P+ LI + + ++ IW+ N + G + GFD++ N+VL+ A+EY ++ K +
Sbjct: 6 ILPLELIDKCIGHK----IWILLKNNKEVVGTLRGFDDFFNMVLDEAKEYQFQNGIKNQT 61
Query: 74 ALGTIMLKGDNITLI 88
+ +I+L G +ITLI
Sbjct: 62 NIDSILLNGAHITLI 76
>gi|313586491|gb|ADR71256.1| U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
Length = 87
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P LI R + ++ IW+ + + G + GFD Y+N+VLE EY + ++ R+ L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEVTAEGRRITKL 65
Query: 76 GTIMLKGDNIT-LIQNLNPD 94
I+L G+NI L+ +PD
Sbjct: 66 DQILLNGNNIAILVPGGSPD 85
>gi|119614396|gb|EAW93990.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Homo sapiens]
Length = 85
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + SR+ I + + I G +LGFD+++N+VLE E+ I + R+ L
Sbjct: 14 PLELVDKCIG--SRIHIVMKSDK--EIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 76 GTIMLKGDNITLIQN 90
I+L G+NIT+ +
Sbjct: 70 DQILLNGNNITMAHS 84
>gi|212532417|ref|XP_002146365.1| small nuclear ribonucleoprotein (LSM5), putative [Talaromyces
marneffei ATCC 18224]
gi|210071729|gb|EEA25818.1| small nuclear ribonucleoprotein (LSM5), putative [Talaromyces
marneffei ATCC 18224]
Length = 83
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + ++ IW+ + G +LGFD+Y+N+VLE E++ K L
Sbjct: 7 PLELIDKCVGSK----IWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYAGNQEK-LPK 61
Query: 78 IMLKGDNITLI 88
I+L G+N+ ++
Sbjct: 62 ILLNGNNVCML 72
>gi|387915912|gb|AFK11565.1| U6 snRNA-associated Sm-like protein LSm5 [Callorhinchus milii]
Length = 90
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + SR+ I + + I G +LGFD+++N+VLE E+ I + R+ L
Sbjct: 13 PLELVDKCIG--SRIHIVMKNDK--EIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 68
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 69 DQILLNGNNITML 81
>gi|227827656|ref|YP_002829436.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.14.25]
gi|227830352|ref|YP_002832132.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
L.S.2.15]
gi|229579169|ref|YP_002837567.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.G.57.14]
gi|229582076|ref|YP_002840475.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.N.15.51]
gi|229584860|ref|YP_002843362.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.27]
gi|238619824|ref|YP_002914650.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.4]
gi|284997857|ref|YP_003419624.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|385773326|ref|YP_005645892.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
gi|385775964|ref|YP_005648532.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|227456800|gb|ACP35487.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus L.S.2.15]
gi|227459452|gb|ACP38138.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.14.25]
gi|228009883|gb|ACP45645.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.G.57.14]
gi|228012792|gb|ACP48553.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.N.15.51]
gi|228019910|gb|ACP55317.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.27]
gi|238380894|gb|ACR41982.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.4]
gi|284445752|gb|ADB87254.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|323474712|gb|ADX85318.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|323477440|gb|ADX82678.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
Length = 76
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 14/86 (16%)
Query: 7 MAPKVQKVMVQPIN-LIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY 65
MA KV+ + +N L+ L+ N + G + +D++MN+VL +EE
Sbjct: 1 MAETAHKVLAESLNNLVLVKLKG------------NKEVRGTLRSYDQHMNLVLSDSEEI 48
Query: 66 NIKSKTRKALGTIMLKGDNITLIQNL 91
+K LGTI+++GDN+ LI L
Sbjct: 49 QSDGSGKK-LGTIVIRGDNVILISPL 73
>gi|154426284|ref|NP_001093908.1| U6 snRNA-associated Sm-like protein LSm5 [Danio rerio]
gi|152012711|gb|AAI50415.1| Zgc:171959 protein [Danio rerio]
Length = 91
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + SR+ I + + I G +LGFD+++N+VLE E+ I + R+ L
Sbjct: 14 PLELVDKCIG--SRIHIVMKNDK--EIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 70 DQILLNGNNITML 82
>gi|342878459|gb|EGU79796.1| hypothetical protein FOXB_09655 [Fusarium oxysporum Fo5176]
gi|408388349|gb|EKJ68035.1| hypothetical protein FPSE_11846 [Fusarium pseudograminearum
CS3096]
Length = 83
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + +R IW+ + G ++GFD+Y+N+VLE E++ K L
Sbjct: 7 PLELIDKCVGSR----IWVIMKGDKEFSGTLVGFDDYVNMVLEDVTEFDYSGNHTK-LPK 61
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 62 ILLNGNNICML 72
>gi|16944624|emb|CAD11394.1| probable U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5 [Neurospora
crassa]
Length = 84
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + +R IW+ + G ++GFD+Y+N+VLE E++ K L
Sbjct: 7 PLELIDKCVGSR----IWVVMKGDKEFAGTLVGFDDYVNMVLEDVTEFDYSGNHTK-LKK 61
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 62 ILLNGNNICML 72
>gi|402081161|gb|EJT76306.1| U6 snRNA-associated Sm-like protein LSm5 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 82
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + +R IW+ + G ++GFD+Y+N+VLE E++ K L
Sbjct: 7 PLELIDKCVGSR----IWVIMKGDKEFSGLLVGFDDYVNMVLEDVTEFDYSGNHTK-LSK 61
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 62 ILLNGNNICML 72
>gi|301630685|ref|XP_002944447.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like, partial
[Xenopus (Silurana) tropicalis]
Length = 81
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 6/72 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + SR+ I + + I G +LGFD+++N+VLE E+ I + R+ L
Sbjct: 14 PLELVDKCIG--SRIHIVMKSDK--EIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 76 GTIMLKGDNITL 87
I+L G+NIT+
Sbjct: 70 DQILLNGNNITM 81
>gi|17560310|ref|NP_506870.1| Protein LSM-5 [Caenorhabditis elegans]
gi|3876465|emb|CAB03013.1| Protein LSM-5 [Caenorhabditis elegans]
Length = 91
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY--NIKSKTRKAL 75
P+ LI + + ++ IW+ + I G + GFD+Y+N+VLE EY K L
Sbjct: 14 PLELIDKCIGSK----IWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKL 69
Query: 76 GTIMLKGDNITLI 88
TI+L G++IT++
Sbjct: 70 DTILLNGNHITML 82
>gi|297527485|ref|YP_003669509.1| hypothetical protein Shell_1522 [Staphylothermus hellenicus DSM
12710]
gi|297256401|gb|ADI32610.1| Like-Sm ribonucleoprotein core [Staphylothermus hellenicus DSM
12710]
Length = 75
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
+ G + +D+++NIVL+ AEE TRK LGTI+++GD + LI
Sbjct: 27 VRGKLKSYDQHLNIVLDDAEEIRENGSTRK-LGTIVIRGDTVILIS 71
>gi|413949490|gb|AFW82139.1| SAD1 [Zea mays]
Length = 137
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P LI R + ++ IW+ + + G + GFD Y+N+VLE EY ++ R+ L
Sbjct: 60 PSELIDRCIGSK----IWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRITKL 115
Query: 76 GTIMLKGDNIT-LIQNLNPDEV 96
I+L G+NI L+ +P +V
Sbjct: 116 DQILLNGNNIAILVPGGSPPDV 137
>gi|403372169|gb|EJY85976.1| Small nuclear ribonucleoprotein G, putative [Oxytricha trifallax]
Length = 709
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
N N + G + G+D+++NIVL++A E I ++ LGTI+++G+++ + +NL+
Sbjct: 24 NANRHVAGVLKGYDQFLNIVLDNAIEI-INKDEKRELGTIVIRGNSVVMWENLD 76
>gi|317139035|ref|XP_003189120.1| U6 snRNA-associated Sm-like protein LSm5 [Aspergillus oryzae
RIB40]
Length = 102
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + +R IW+ + G +LGFD+Y+N+VLE E++ S + L
Sbjct: 26 PLELIDKCVGSR----IWVIMKNDKEFAGTLLGFDDYVNMVLEDVTEFDY-SGAQIKLPK 80
Query: 78 IMLKGDNITLI 88
I+L G+N+ ++
Sbjct: 81 ILLNGNNVCML 91
>gi|168009596|ref|XP_001757491.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691185|gb|EDQ77548.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 86
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK-- 73
+ P LI R + ++ IW+ + + G + GFD Y+N+VLE EY I S+ R+
Sbjct: 9 LMPSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGRRIT 64
Query: 74 ALGTIMLKGDNITLI 88
L I+L G+NI ++
Sbjct: 65 KLEQILLNGNNIAIL 79
>gi|225681342|gb|EEH19626.1| predicted protein [Paracoccidioides brasiliensis Pb03]
Length = 130
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + ++ IW+ + G +LGFD+Y+N+VLE E++ K L
Sbjct: 7 PLELIDKCVGSK----IWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYTGAQTK-LPK 61
Query: 78 IMLKGDNITLIQNL 91
I+L G+N+ ++ L
Sbjct: 62 ILLNGNNVCMLAYL 75
>gi|321250537|ref|XP_003191841.1| hypothetical protein CGB_B0090W [Cryptococcus gattii WM276]
gi|317458309|gb|ADV20054.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 122
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK--TRK 73
+ P+ L+ R + + IW+ G ++GFD+Y+N+VL+ +EY + + T
Sbjct: 5 ILPLELVDRCIGS----PIWVLMKNEREFTGTLMGFDDYVNMVLKDVKEYEVTASGITET 60
Query: 74 ALGTIMLKGDNITL 87
LG +L G+NI +
Sbjct: 61 DLGDTLLNGNNIAM 74
>gi|328853199|gb|EGG02339.1| hypothetical protein MELLADRAFT_75479 [Melampsora larici-populina
98AG31]
Length = 78
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 41/59 (69%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNL 91
+++L N ++ G + GFD ++N+VL+ A+E N++ ++ +G ++++G++++ I+ L
Sbjct: 16 RLFLNLQGNRKLSGVLRGFDIFLNLVLDEAQEENLEGGEKRKMGLVVIRGNSVSSIETL 74
>gi|284174982|ref|ZP_06388951.1| small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus 98/2]
gi|384434272|ref|YP_005643630.1| Sm ribonucleoprotein-like protein [Sulfolobus solfataricus 98/2]
gi|261602426|gb|ACX92029.1| Like-Sm ribonucleoprotein core [Sulfolobus solfataricus 98/2]
Length = 76
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 14/86 (16%)
Query: 7 MAPKVQKVMVQPIN-LIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY 65
MA KV+ + +N L+ L+ N + G + +D++MN+VL +EE
Sbjct: 1 MAETAHKVLAESLNNLVLVKLKG------------NKEVRGMLRSYDQHMNLVLSDSEEI 48
Query: 66 NIKSKTRKALGTIMLKGDNITLIQNL 91
+K LGTI+++GDN+ LI L
Sbjct: 49 QSDGSGKK-LGTIVIRGDNVILISPL 73
>gi|238482069|ref|XP_002372273.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
flavus NRRL3357]
gi|220700323|gb|EED56661.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
flavus NRRL3357]
Length = 83
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + +R IW+ + G +LGFD+Y+N+VLE E++ S + L
Sbjct: 7 PLELIDKCVGSR----IWVIMKNDKEFAGTLLGFDDYVNMVLEDVTEFDY-SGAQIKLPK 61
Query: 78 IMLKGDNITLI 88
I+L G+N+ ++
Sbjct: 62 ILLNGNNVCML 72
>gi|367025621|ref|XP_003662095.1| hypothetical protein MYCTH_2302246 [Myceliophthora thermophila
ATCC 42464]
gi|347009363|gb|AEO56850.1| hypothetical protein MYCTH_2302246 [Myceliophthora thermophila
ATCC 42464]
Length = 85
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + +R IW+ + G ++GFD+Y+N+VLE E++ K L
Sbjct: 7 PLELIDKCVGSR----IWVIMKGDKEFAGTLVGFDDYVNMVLEDVTEFDYSGNHTK-LKK 61
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 62 ILLNGNNICML 72
>gi|198425042|ref|XP_002126895.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm5
[Ciona intestinalis]
Length = 89
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 43 RIEGHILGFDEYMNIVLESAEEYNIKSKTRK--ALGTIMLKGDNITLI 88
I G +LGFD+++N+VLE EY S+ R+ L I+L G+NIT++
Sbjct: 33 EIVGTLLGFDDFVNMVLEDVTEYESTSEGRRISKLDQILLNGNNITML 80
>gi|255719860|ref|XP_002556210.1| KLTH0H07612p [Lachancea thermotolerans]
gi|238942176|emb|CAR30348.1| KLTH0H07612p [Lachancea thermotolerans CBS 6340]
Length = 81
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 35/55 (63%)
Query: 34 IWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
+W+ + G ++G+D+++N+VLE EY+ + ++ G ++L G+NI+++
Sbjct: 20 VWVMLTSHREFAGTLVGYDDFVNVVLEDVIEYDHDQEIKRHAGKMLLSGNNISML 74
>gi|383320750|ref|YP_005381591.1| Small nuclear ribonucleoprotein, LSM family [Methanocella
conradii HZ254]
gi|379322120|gb|AFD01073.1| Small nuclear ribonucleoprotein, LSM family [Methanocella
conradii HZ254]
Length = 72
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
G + G+D +MN+VLE+AEE ++RK LGTI+++GD + +
Sbjct: 29 GELQGYDMHMNLVLENAEELKENEESRK-LGTIIVRGDTVVYVS 71
>gi|403363323|gb|EJY81404.1| Small nuclear ribonucleoprotein polypeptide G [Oxytricha
trifallax]
Length = 79
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNP 93
N N + G + G+D+++NIVL++A E I ++ LGTI+++G+++ + +NL+
Sbjct: 24 NANRHVAGVLKGYDQFLNIVLDNAIEI-INKDEKRELGTIVIRGNSVVMWENLDK 77
>gi|124485152|ref|YP_001029768.1| hypothetical protein Mlab_0325 [Methanocorpusculum labreanum Z]
gi|124362693|gb|ABN06501.1| Like-Sm ribonucleoprotein, core [Methanocorpusculum labreanum Z]
Length = 77
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
+V PI + + ++ V+I ++ + EG ++ DEY+N+ LE E I + R+
Sbjct: 5 IVLPIKKVNSLVDSKISVEI---KDEGCKFEGRLVAMDEYLNLHLE--ETVEITANGRRN 59
Query: 75 LGTIMLKGDNITLIQNLN 92
+GT++++G+NI I LN
Sbjct: 60 IGTVVIRGNNILTISPLN 77
>gi|356524941|ref|XP_003531086.1| PREDICTED: uncharacterized protein LOC100306359 [Glycine max]
gi|255628297|gb|ACU14493.1| unknown [Glycine max]
Length = 87
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P LI R + ++ IW+ + + G + GFD Y+N+VLE EY I ++ R+ L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKL 65
Query: 76 GTIMLKGDNITLI 88
I+L G+NI ++
Sbjct: 66 DQILLNGNNIAIL 78
>gi|409083153|gb|EKM83510.1| hypothetical protein AGABI1DRAFT_110162 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 84
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA- 74
+ P+ LI R + ++ IW+ + G +LGFD+++N+VLE EY + +K
Sbjct: 5 ILPLELIDRCIGSK----IWVVMKNDREFSGTLLGFDDFVNMVLEDVIEYETTPEGKKET 60
Query: 75 -LGTIMLKGDNITLI 88
L +L G+NI ++
Sbjct: 61 KLAQTLLNGNNICML 75
>gi|193890979|gb|ACF28643.1| small nuclear ribonucleoprotein E [Amphidinium carterae]
Length = 82
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--LGTIMLKGDNIT-LIQ 89
+IW+ + + G + GFD+Y+N+VL+ EY + +K L +I+L G+NIT ++
Sbjct: 11 RIWVIMKGDKELVGTLRGFDDYVNMVLDDVREYTFTPEGKKVTQLESILLNGNNITMMVP 70
Query: 90 NLNPDE 95
+P+E
Sbjct: 71 GGDPEE 76
>gi|390597684|gb|EIN07083.1| like-Sm ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 84
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI--KSKTRK 73
+ P+ LI R + +R IW+ + G +LGFD+++N+VL+ E+ + K +
Sbjct: 5 ILPLELIDRCIGSR----IWVIMKNDREFTGTLLGFDDFVNMVLDDVTEFETTPEGKKKT 60
Query: 74 ALGTIMLKGDNITLI 88
L +L G+NI ++
Sbjct: 61 QLAQTLLNGNNICML 75
>gi|126336758|ref|XP_001371876.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Monodelphis domestica]
Length = 166
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRK--ALGTIMLKGDNITLI 88
I G +LGFD+++N+VLE E+ I + R+ L I+L G+NIT++
Sbjct: 36 IVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMM 82
>gi|396080948|gb|AFN82568.1| small nuclear ribonucleoprotein E [Encephalitozoon romaleae
SJ-2008]
Length = 73
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 13/73 (17%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKAL 75
+ P+ ++ FL V+IW +++ ++ +G I+GFDEYMN+V+++ + I
Sbjct: 8 ILPLEKLYDFLSKSIDVEIW-EKDIRVKHKGRIVGFDEYMNLVIDNGTKRYI-------- 58
Query: 76 GTIMLKGDNITLI 88
LKGD I +I
Sbjct: 59 ----LKGDCICVI 67
>gi|355700152|gb|AES01357.1| LSM5-like protein, U6 small nuclear RNA associated [Mustela
putorius furo]
Length = 76
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 30 SRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--ALGTIMLKGDNITL 87
SR+ I + + I G +LGFD+++N+VLE E+ I + R+ L I+L G+NIT+
Sbjct: 9 SRIHIVMKSDK--EIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITM 66
Query: 88 I 88
+
Sbjct: 67 L 67
>gi|355571637|ref|ZP_09042865.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
gi|354825270|gb|EHF09500.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
Length = 75
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 17 QPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALG 76
+P++++ + L NR V + L LR G + G+D +MN+VL+ AEE I+ +++G
Sbjct: 4 RPLDILDQVL-NRQPVIVSLKGGRELR--GVLQGYDVHMNLVLDKAEE--IEGGQSRSVG 58
Query: 77 TIMLKGDNITLI 88
T++++GDN+ I
Sbjct: 59 TLIVRGDNVIYI 70
>gi|281343311|gb|EFB18895.1| hypothetical protein PANDA_010826 [Ailuropoda melanoleuca]
Length = 79
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 30 SRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--ALGTIMLKGDNITL 87
SR+ I + + I G +LGFD+++N+VLE E+ I + R+ L I+L G+NIT+
Sbjct: 12 SRIHIVMKSDK--EIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITM 69
Query: 88 I 88
+
Sbjct: 70 L 70
>gi|299471840|emb|CBN77010.1| Sm-like protein LSm5 [Ectocarpus siliculosus]
Length = 85
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIK---SKTRKA 74
P+ LI + + +R +W+ + + G + GFD+Y+N+VL+ EY + +K R
Sbjct: 7 PLELIDKCIGSR----LWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEVDADGTKRRIQ 62
Query: 75 LGTIMLKGDNITLI 88
L I+L G+N+ ++
Sbjct: 63 LDQILLNGNNVAML 76
>gi|225711126|gb|ACO11409.1| U6 snRNA-associated Sm-like protein LSm5 [Caligus rogercresseyi]
Length = 93
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 6 KMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY 65
+ P + P+ L+ + + +R I + + I G +LGFD+++N+VLE E+
Sbjct: 3 SLPPAPNPSTILPLELVDKAIGSR----IHIIMKGDKEIVGTLLGFDDFVNMVLEDVTEF 58
Query: 66 NIKSKTRKA--LGTIMLKGDNITLI 88
S+ ++ L I+L G+NIT++
Sbjct: 59 ESTSEGQRVSKLDQILLNGNNITML 83
>gi|351699507|gb|EHB02426.1| U6 snRNA-associated Sm-like protein LSm5, partial [Heterocephalus
glaber]
Length = 82
Score = 41.6 bits (96), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 30 SRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--ALGTIMLKGDNITL 87
SR+ I + + I G +LGFD+++N+VLE E+ I + R+ L I+L G+NIT+
Sbjct: 15 SRIHIVMKSDK--EIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITM 72
Query: 88 I 88
+
Sbjct: 73 L 73
>gi|307104476|gb|EFN52729.1| hypothetical protein CHLNCDRAFT_138271 [Chlorella variabilis]
Length = 99
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRS-RVQIWLYENVNLRIEGHI----LGFDEYMNIVLES 61
+APK Q + P ++ L +R ++W+ + IEG + GFD ++N+VLE
Sbjct: 2 IAPKRQNLAGNPSQILPSELIDRCVGSKVWVVMRGDKEIEGTLRRVAAGFDVFVNMVLED 61
Query: 62 AEEYNIKSKTRKA--LGTIMLKGDNITLI 88
EY I + +K L I+L G+NI ++
Sbjct: 62 VTEYEITPEGKKVTHLDQILLNGNNIAVL 90
>gi|322704991|gb|EFY96580.1| small nuclear ribonucleoprotein (LSM5), putative [Metarhizium
anisopliae ARSEF 23]
Length = 100
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
N L G ++GFD+Y+N+VLE E++ S T L I+L G+NI ++
Sbjct: 44 NSELEFSGTLIGFDDYVNMVLEDVTEFDY-SGTHTKLPKILLNGNNICML 92
>gi|326517334|dbj|BAK00034.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 80
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 41/63 (65%), Gaps = 4/63 (6%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
++QI L N N + G + GFD++MN+V+++ E N KT +G ++L+G+++ +I+
Sbjct: 17 KLQIKL--NANRVVIGTLRGFDQFMNLVVDNTVEVNGDEKT--DIGMVVLRGNSVVMIEA 72
Query: 91 LNP 93
L P
Sbjct: 73 LEP 75
>gi|426201795|gb|EKV51718.1| hypothetical protein AGABI2DRAFT_189942 [Agaricus bisporus var.
bisporus H97]
Length = 84
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA- 74
+ P+ LI R + ++ IW+ + G +LGFD+++N+VLE EY + +K
Sbjct: 5 ILPLELIDRCIGSK----IWVVMKNDREFSGTLLGFDDFVNMVLEDVIEYETTPEGKKET 60
Query: 75 -LGTIMLKGDNITLI 88
L +L G+NI ++
Sbjct: 61 KLSQTLLNGNNICML 75
>gi|21730739|pdb|1LJO|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm2) From
Archaeoglobus Fulgidus At 1.95a Resolution
Length = 77
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK 73
MV P ++ + RV++ EN ++ G + G D+YMN+ L +A E + K R
Sbjct: 2 AMVLPNQMVKSMVGKIIRVEMKGEEN---QLVGKLEGVDDYMNLYLTNAMECKGEEKVR- 57
Query: 74 ALGTIMLKGDNITLIQ 89
+LG I+L+G+N+ LIQ
Sbjct: 58 SLGEIVLRGNNVVLIQ 73
>gi|339233484|ref|XP_003381859.1| putative LSM domain protein [Trichinella spiralis]
gi|339261308|ref|XP_003367972.1| putative LSM domain protein [Trichinella spiralis]
gi|316964809|gb|EFV49750.1| putative LSM domain protein [Trichinella spiralis]
gi|316979279|gb|EFV62087.1| putative LSM domain protein [Trichinella spiralis]
Length = 92
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P+ LI + + ++ +W+ N + G +LGFD+Y+NIVLE EY ++ ++ L
Sbjct: 15 PLELIDKCIGSK----LWIVMKGNKELVGTLLGFDDYVNIVLEDVIEYETTTEGKRITRL 70
Query: 76 GTIMLKGDNITLI 88
I+L G +I ++
Sbjct: 71 DQILLNGTHIAML 83
>gi|156053688|ref|XP_001592770.1| U6 snRNA-associated Sm-like protein LSm5 [Sclerotinia
sclerotiorum 1980]
gi|154703472|gb|EDO03211.1| U6 snRNA-associated Sm-like protein LSm5 [Sclerotinia
sclerotiorum 1980 UF-70]
Length = 84
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + ++ IW+ + G + GFD+Y+N+VLE E++ +S + L
Sbjct: 7 PLELIDKCVGSK----IWVVMKGDKEFTGTLTGFDDYVNMVLEDVIEFDHQSGNQTKLPK 62
Query: 78 IMLKGDNITLI 88
I+L G+ I ++
Sbjct: 63 ILLNGNGIAML 73
>gi|119719338|ref|YP_919833.1| like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
gi|119524458|gb|ABL77830.1| Like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
Length = 73
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
I G + +D ++N+VLE+AEE I+ + LGTI+++GDN+ L+
Sbjct: 27 IRGQLKSYDYHLNLVLENAEE--IRGTRTRQLGTIIVRGDNVILVS 70
>gi|440632020|gb|ELR01939.1| hypothetical protein GMDG_05112 [Geomyces destructans 20631-21]
Length = 227
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
+IW+ + G + GFD+Y+N+VLE E++ T K + I+L G+NI + +
Sbjct: 149 KIWVVMKTDKEFTGTLTGFDDYVNMVLEDVTEFDYTGATTK-MEKILLNGNNICMAR 204
>gi|384249954|gb|EIE23434.1| Sm-E protein [Coccomyxa subellipsoidea C-169]
Length = 95
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRS-RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY 65
+APK P +L+ L ++ +IW+ + ++G + GFD ++N+VLE EEY
Sbjct: 2 IAPKKASFQGNPSHLMPSELIDKCINSKIWVIMKGDKELQGTLRGFDVFVNMVLEDVEEY 61
Query: 66 NIKSKTRKA--LGTIMLKGDNIT-LIQNLNPDE 95
+ ++ + + I+L G+NI L+ P+E
Sbjct: 62 EMTAEGLRVTHMDQILLNGNNIAVLVPGGKPEE 94
>gi|452822058|gb|EME29081.1| U6 snRNA-associated Sm-like protein LSm5 [Galdieria sulphuraria]
Length = 89
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK--TRK 73
V P+ L+ + + + QIW+ + G + GFD+++N+VLE EY S+ R
Sbjct: 8 VLPLELVDKCIGS----QIWVLMKTDKEFTGILRGFDQFVNMVLEDVSEYEWTSEGLIRT 63
Query: 74 ALGTIMLKGDNITLI 88
L I+L G+NI ++
Sbjct: 64 HLDQILLNGNNICVL 78
>gi|11497974|ref|NP_069198.1| snRNP [Archaeoglobus fulgidus DSM 4304]
gi|2650273|gb|AAB90874.1| snRNP, putative [Archaeoglobus fulgidus DSM 4304]
Length = 75
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
MV P ++ + RV++ EN ++ G + G D+YMN+ L +A E + K R +
Sbjct: 1 MVLPNQMVKSMVGKIIRVEMKGEEN---QLVGKLEGVDDYMNLYLTNAMECKGEEKVR-S 56
Query: 75 LGTIMLKGDNITLIQ 89
LG I+L+G+N+ LIQ
Sbjct: 57 LGEIVLRGNNVVLIQ 71
>gi|328875018|gb|EGG23383.1| hypothetical protein DFA_05515 [Dictyostelium fasciculatum]
Length = 897
Score = 41.2 bits (95), Expect = 0.083, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 21/99 (21%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY-N 66
APK K M+Q IN + N R+ I G L FD++MNIV+ AEE+
Sbjct: 682 APKSSK-MLQYINYRMKITINDGRI-----------IVGRFLAFDKHMNIVVCDAEEFRR 729
Query: 67 IKSK------TRKALGTIMLKGDNITLI--QNLNPDEVK 97
IK K ++ LG ++++G+ + + ++ P+E+K
Sbjct: 730 IKQKGKEDREEKRTLGMLVIRGETVISLSAESPPPEEIK 768
>gi|115453489|ref|NP_001050345.1| Os03g0410900 [Oryza sativa Japonica Group]
gi|37991869|gb|AAR06315.1| putative small nuclear ribonucleoprotein polypeptide G [Oryza
sativa Japonica Group]
gi|108708766|gb|ABF96561.1| small nuclear ribonucleoprotein G, putative, expressed [Oryza
sativa Japonica Group]
gi|113548816|dbj|BAF12259.1| Os03g0410900 [Oryza sativa Japonica Group]
gi|125544286|gb|EAY90425.1| hypothetical protein OsI_12008 [Oryza sativa Indica Group]
gi|125586635|gb|EAZ27299.1| hypothetical protein OsJ_11235 [Oryza sativa Japonica Group]
gi|215769229|dbj|BAH01458.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 80
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 41/63 (65%), Gaps = 4/63 (6%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
++QI L N N I G + GFD++MN+V+++ E N KT +G ++++G+++ +I+
Sbjct: 17 KLQIKL--NANRVIVGTLRGFDQFMNLVVDNTVEVNGNDKT--DIGMVVVRGNSVVMIEA 72
Query: 91 LNP 93
L P
Sbjct: 73 LEP 75
>gi|209881614|ref|XP_002142245.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209557851|gb|EEA07896.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 155
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 7/57 (12%)
Query: 46 GHILGFDEYMNIVLESAEEY-NIKSK------TRKALGTIMLKGDNITLIQNLNPDE 95
G+++ FD++MN+VL +EY +IK K +++LG I+L+G+NI I P +
Sbjct: 21 GNLMAFDKHMNVVLSDCQEYRSIKKKGEDLKEVKRSLGFIVLRGENIVTITAEAPPK 77
>gi|297792081|ref|XP_002863925.1| hypothetical protein ARALYDRAFT_917817 [Arabidopsis lyrata subsp.
lyrata]
gi|297309760|gb|EFH40184.1| hypothetical protein ARALYDRAFT_917817 [Arabidopsis lyrata subsp.
lyrata]
Length = 88
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P LI R + ++ IW+ + + G + GFD Y+N+VLE EY I ++ R+ L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKL 65
Query: 76 GTIMLKGDNITLI 88
I+L G+NI ++
Sbjct: 66 DQILLNGNNIAIL 78
>gi|302421256|ref|XP_003008458.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261351604|gb|EEY14032.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|346974640|gb|EGY18092.1| hypothetical protein VDAG_08426 [Verticillium dahliae VdLs.17]
Length = 80
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + +R IW+ + G + GFD+Y+N+VLE E++ + K L
Sbjct: 7 PLELIDKCVGSR----IWVIMKGDKEFSGTLTGFDDYVNMVLEDVTEFDYSGQHVK-LPK 61
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 62 ILLNGNNICML 72
>gi|432331010|ref|YP_007249153.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
gi|432137719|gb|AGB02646.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
Length = 78
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 47/74 (63%), Gaps = 4/74 (5%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
+V PI +F + ++ V+I ++ +++G ++ DEY+NI ++ EY + ++ ++
Sbjct: 5 IVLPIKKVFALVDSKISVEI---KDEGRKLQGRLVAVDEYLNIHMDETIEY-VDNQRGRS 60
Query: 75 LGTIMLKGDNITLI 88
LGT++++G+NI I
Sbjct: 61 LGTVVIRGNNILTI 74
>gi|322696272|gb|EFY88067.1| putative U6 snRNA-associated protein [Metarhizium acridum CQMa
102]
Length = 81
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
N L G ++GFD+Y+N+VLE E++ S T L I+L G+NI ++
Sbjct: 25 NSELEFSGTLVGFDDYVNMVLEDVTEFDY-SGTHTKLPKILLNGNNICML 73
>gi|118398961|ref|XP_001031807.1| Sm protein [Tetrahymena thermophila]
gi|89286141|gb|EAR84144.1| Sm protein [Tetrahymena thermophila SB210]
Length = 159
Score = 41.2 bits (95), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 15/83 (18%)
Query: 26 LQNRSRVQIWLYENVNLRIE------GHILGFDEYMNIVLESAEEYN-IKSK-------- 70
+ NRS+ W+ V + I+ G L FD+++N+VL EE+ IK K
Sbjct: 1 MANRSKFMQWIDYRVRVTIQDGRMLVGTFLAFDKHLNLVLSETEEFRPIKPKTKGEPERQ 60
Query: 71 TRKALGTIMLKGDNITLIQNLNP 93
T++ LG ++++G+NI I P
Sbjct: 61 TKRILGLVIIRGENIVSINAEAP 83
>gi|356512167|ref|XP_003524792.1| PREDICTED: uncharacterized protein LOC100527929 [Glycine max]
gi|255633598|gb|ACU17158.1| unknown [Glycine max]
Length = 87
Score = 41.2 bits (95), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P LI R + ++ IW+ + + G + GFD Y N+VLE EY I ++ R+ L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYANMVLEDVTEYEITAEGRRITKL 65
Query: 76 GTIMLKGDNITLI 88
I+L G+NI ++
Sbjct: 66 DQILLNGNNIAIL 78
>gi|115463665|ref|NP_001055432.1| Os05g0389300 [Oryza sativa Japonica Group]
gi|357133866|ref|XP_003568543.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Brachypodium distachyon]
gi|54287604|gb|AAV31348.1| putative snRNA associated protein [Oryza sativa Japonica Group]
gi|113578983|dbj|BAF17346.1| Os05g0389300 [Oryza sativa Japonica Group]
gi|215765216|dbj|BAG86913.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218196723|gb|EEC79150.1| hypothetical protein OsI_19819 [Oryza sativa Indica Group]
gi|222622229|gb|EEE56361.1| hypothetical protein OsJ_05491 [Oryza sativa Japonica Group]
Length = 89
Score = 41.2 bits (95), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P LI R + ++ IW+ + + G + GFD Y+N+VLE EY ++ R+ L
Sbjct: 11 PSELIDRCIGSK----IWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRITKL 66
Query: 76 GTIMLKGDNIT-LIQNLNPDEV 96
I+L G+NI L+ +P +V
Sbjct: 67 DQILLNGNNIAILVPGGSPPDV 88
>gi|15239727|ref|NP_199698.1| U6 snRNA-associated Sm-like protein LSm5 [Arabidopsis thaliana]
gi|9758886|dbj|BAB09440.1| U6 snRNA-associated Sm-like protein-like [Arabidopsis thaliana]
gi|16554971|gb|AAK61592.1| Sm-like protein [Arabidopsis thaliana]
gi|106879147|gb|ABF82603.1| At5g48870 [Arabidopsis thaliana]
gi|332008352|gb|AED95735.1| U6 snRNA-associated Sm-like protein LSm5 [Arabidopsis thaliana]
gi|386305005|gb|AFJ05005.1| hypothetical protein [Arabidopsis thaliana]
Length = 88
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P LI R + ++ IW+ + + G + GFD Y+N+VLE EY I ++ R+ L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKL 65
Query: 76 GTIMLKGDNITLI 88
I+L G+NI ++
Sbjct: 66 DQILLNGNNIAIL 78
>gi|157107685|ref|XP_001649890.1| small nuclear ribonucleoprotein, core, putative [Aedes aegypti]
gi|108879502|gb|EAT43727.1| AAEL004848-PA [Aedes aegypti]
Length = 92
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + SR+ I + + I G +LGFD+++N++LE EY S+ R+ L
Sbjct: 14 PLELVDKCIG--SRIHIIMKNDK--EIVGTLLGFDDFVNMLLEDVTEYENTSEGRRITKL 69
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 70 DQILLNGNNITML 82
>gi|255953479|ref|XP_002567492.1| Pc21g04460 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589203|emb|CAP95343.1| Pc21g04460 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 83
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + +R IW+ + G +LGFD+Y+N+V+E E++ K L
Sbjct: 7 PLELIDKCVGSR----IWVVMKGDKEFSGTLLGFDDYVNMVMEDVTEFDYTGAQIK-LPK 61
Query: 78 IMLKGDNITLI 88
++L G+NI ++
Sbjct: 62 LLLNGNNICML 72
>gi|350854337|emb|CCD58316.1| unnamed protein product [Schistosoma mansoni]
Length = 53
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 6/44 (13%)
Query: 49 LGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
+GFDEYMN+VL A E ++KS +K L G+ ITL+Q N
Sbjct: 16 IGFDEYMNLVLADACERHMKSGAKKPL------GETITLVQVAN 53
>gi|157103848|ref|XP_001648155.1| small nuclear ribonucleoprotein, core, putative [Aedes aegypti]
gi|108869330|gb|EAT33555.1| AAEL014169-PA [Aedes aegypti]
Length = 92
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + SR+ I + + I G +LGFD+++N++LE EY S+ R+ L
Sbjct: 14 PLELVDKCIG--SRIHIIMKNDK--EIVGTLLGFDDFVNMLLEDVTEYENTSEGRRITKL 69
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 70 DQILLNGNNITML 82
>gi|260807635|ref|XP_002598614.1| hypothetical protein BRAFLDRAFT_118348 [Branchiostoma floridae]
gi|229283887|gb|EEN54626.1| hypothetical protein BRAFLDRAFT_118348 [Branchiostoma floridae]
Length = 87
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + SR+ I + + I G +LGFD+++N+VLE E+ S+ R+ L
Sbjct: 10 PLELVDKCIG--SRIHIVMKSDK--EIVGTLLGFDDFVNMVLEDVTEFENTSEGRRITKL 65
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 66 DQILLNGNNITML 78
>gi|389623205|ref|XP_003709256.1| U6 snRNA-associated Sm-like protein LSm5 [Magnaporthe oryzae
70-15]
gi|351648785|gb|EHA56644.1| U6 snRNA-associated Sm-like protein LSm5 [Magnaporthe oryzae
70-15]
gi|440486474|gb|ELQ66335.1| hypothetical protein OOW_P131scaffold00400g22 [Magnaporthe oryzae
P131]
Length = 82
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + +R IW+ + G ++GFD+Y+N+VLE E++ K +
Sbjct: 7 PLELIDKCVGSR----IWVIMKGDKEFSGLLVGFDDYVNMVLEDVTEFDYSGNHTK-MSK 61
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 62 ILLNGNNICML 72
>gi|226504910|ref|NP_001152573.1| SAD1 [Zea mays]
gi|226528898|ref|NP_001149693.1| SAD1 [Zea mays]
gi|242090409|ref|XP_002441037.1| hypothetical protein SORBIDRAFT_09g019200 [Sorghum bicolor]
gi|194697624|gb|ACF82896.1| unknown [Zea mays]
gi|195606068|gb|ACG24864.1| SAD1 [Zea mays]
gi|195609070|gb|ACG26365.1| SAD1 [Zea mays]
gi|195629524|gb|ACG36403.1| SAD1 [Zea mays]
gi|195638676|gb|ACG38806.1| SAD1 [Zea mays]
gi|195657645|gb|ACG48290.1| SAD1 [Zea mays]
gi|241946322|gb|EES19467.1| hypothetical protein SORBIDRAFT_09g019200 [Sorghum bicolor]
gi|413945216|gb|AFW77865.1| SAD1 isoform 1 [Zea mays]
gi|413945217|gb|AFW77866.1| SAD1 isoform 2 [Zea mays]
gi|413949491|gb|AFW82140.1| SAD1 [Zea mays]
Length = 88
Score = 40.8 bits (94), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P LI R + ++ IW+ + + G + GFD Y+N+VLE EY ++ R+ L
Sbjct: 11 PSELIDRCIGSK----IWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRITKL 66
Query: 76 GTIMLKGDNIT-LIQNLNPDEV 96
I+L G+NI L+ +P +V
Sbjct: 67 DQILLNGNNIAILVPGGSPPDV 88
>gi|332374080|gb|AEE62181.1| unknown [Dendroctonus ponderosae]
Length = 89
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
A V + P+ L+ + + SR+ I + + I G +LGFD+++N++LE EY
Sbjct: 3 AMPVSSSTLLPLELVDKCIG--SRIHIIMKNDK--EIVGTLLGFDDFVNMLLEDVTEYET 58
Query: 68 KSKTRKA--LGTIMLKGDNITLI 88
+ R+ L I+L G+NIT++
Sbjct: 59 TPEGRRITRLDQILLNGNNITML 81
>gi|15224075|ref|NP_179971.1| small nuclear ribonucleoprotein [Arabidopsis thaliana]
gi|297821653|ref|XP_002878709.1| hypothetical protein ARALYDRAFT_900880 [Arabidopsis lyrata subsp.
lyrata]
gi|6094211|sp|O82221.1|RUXG_ARATH RecName: Full=Probable small nuclear ribonucleoprotein G;
Short=snRNP-G; AltName: Full=Sm protein G; Short=Sm-G;
Short=SmG
gi|3738322|gb|AAC63663.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|21593829|gb|AAM65796.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|25083131|gb|AAN72046.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|30102776|gb|AAP21306.1| At2g23930 [Arabidopsis thaliana]
gi|297324548|gb|EFH54968.1| hypothetical protein ARALYDRAFT_900880 [Arabidopsis lyrata subsp.
lyrata]
gi|330252409|gb|AEC07503.1| small nuclear ribonucleoprotein [Arabidopsis thaliana]
Length = 80
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
++QI L N N + G + GFD++MN+V+++ E N KT +G ++++G++I ++
Sbjct: 17 KLQIKL--NANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKT--DIGMVVIRGNSIVTVEA 72
Query: 91 LNP 93
L P
Sbjct: 73 LEP 75
>gi|298674160|ref|YP_003725910.1| Sm ribonucleoprotein-like protein [Methanohalobium evestigatum
Z-7303]
gi|298287148|gb|ADI73114.1| Like-Sm ribonucleoprotein core [Methanohalobium evestigatum
Z-7303]
Length = 72
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
G + G+D +MN+VL++AEE N RK LG+++++GDN+ +
Sbjct: 29 GELQGYDVHMNLVLDNAEELNDGEIVRK-LGSVVIRGDNVVYVS 71
>gi|110739170|dbj|BAF01501.1| Sm-like protein [Arabidopsis thaliana]
Length = 88
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P LI R + ++ IW+ + + G + GFD Y+N+VLE EY I ++ R+ L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKL 65
Query: 76 GTIMLKGDNITLI 88
I+L G+NI ++
Sbjct: 66 DQILLNGNNIAIL 78
>gi|321472276|gb|EFX83246.1| hypothetical protein DAPPUDRAFT_230679 [Daphnia pulex]
Length = 89
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
MA V ++ P+ L+ + + SR+ I + + I G +LGFD+++N+VLE E+
Sbjct: 1 MAAPVPTLL--PLELVDKCIG--SRIHIIMKNDK--EIVGTLLGFDDFVNMVLEDVSEFE 54
Query: 67 IKSKTRKA--LGTIMLKGDNITLI 88
+ R+ L I+L G+NIT++
Sbjct: 55 STPEGRRVTKLDQILLNGNNITML 78
>gi|237835661|ref|XP_002367128.1| snRNP protein Lsm5, putative [Toxoplasma gondii ME49]
gi|211964792|gb|EEA99987.1| snRNP protein Lsm5, putative [Toxoplasma gondii ME49]
gi|221485337|gb|EEE23618.1| snRNP protein Lsm5, putative [Toxoplasma gondii GT1]
gi|221506198|gb|EEE31833.1| snRNP protein Lsm5, putative [Toxoplasma gondii VEG]
Length = 119
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT--RKAL 75
P+ L+ + + +R +W+ + + G + GFD+++N+VL+ EY + L
Sbjct: 26 PLALVDKCIGSR----MWIIMKGDKELAGTLRGFDDFVNMVLDDVTEYTFTPTGVKKTKL 81
Query: 76 GTIMLKGDNIT-LIQNLNPDEVK 97
+I+L G++IT L+ +P+E +
Sbjct: 82 QSILLNGNSITMLVPGGDPEEAQ 104
>gi|440465859|gb|ELQ35159.1| hypothetical protein OOU_Y34scaffold00725g17 [Magnaporthe oryzae
Y34]
Length = 82
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + +R IW+ + G ++GFD+Y+N+VLE E++ K +
Sbjct: 7 PLELIDKCVGSR----IWVIMKGDKEFSGLLVGFDDYVNMVLEDVTEFDYSGNYTK-MSK 61
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 62 ILLNGNNICML 72
>gi|355691296|gb|EHH26481.1| hypothetical protein EGK_16467 [Macaca mulatta]
Length = 91
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 30 SRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--ALGTIMLKGDNITL 87
SR+ I + + I G +LGFD+++N+VL+ E+ I + R+ L I+L G+NIT+
Sbjct: 24 SRIHIVMKSDK--EIVGTLLGFDDFVNMVLQDVTEFEITPEGRRITKLDQILLNGNNITM 81
Query: 88 I 88
+
Sbjct: 82 L 82
>gi|345567853|gb|EGX50755.1| hypothetical protein AOL_s00054g841 [Arthrobotrys oligospora ATCC
24927]
Length = 81
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ L+ + + ++ IW+ G ++GFD+Y+N+VLE EY+ + + L
Sbjct: 7 PLELVDKCVGSK----IWVVMKSEKEFSGTLVGFDDYVNMVLEDVTEYDAGEQIK--LKK 60
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 61 ILLNGNNICML 71
>gi|320592276|gb|EFX04715.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 80
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + +R IW+ G ++GFD+Y+N+VLE E++ K +
Sbjct: 7 PLELIDKCVGSR----IWVIMKGEREFSGTLVGFDDYVNMVLEEVTEFDYSGGQTK-MSK 61
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 62 ILLNGNNICML 72
>gi|443685344|gb|ELT88979.1| hypothetical protein CAPTEDRAFT_188465 [Capitella teleta]
Length = 85
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 43 RIEGHILGFDEYMNIVLESAEEYNIKSKTRK--ALGTIMLKGDNITLI 88
I G +LGFD+++N+VLE EY ++ R+ L I+L G+NIT++
Sbjct: 29 EIVGTLLGFDDFVNMVLEDVVEYETTAEGRRVTTLDQILLNGNNITML 76
>gi|390331570|ref|XP_788177.3| PREDICTED: small nuclear ribonucleoprotein G-like
[Strongylocentrotus purpuratus]
Length = 77
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
++ L N N R+ G + GFD +MN+V++ A E +I + + +G ++++G++I L++ L+
Sbjct: 16 RLSLKLNGNRRVTGVLRGFDPFMNLVIDEATE-DISTTQKNDIGMVVVRGNSIILLEALD 74
>gi|326472938|gb|EGD96947.1| small nuclear ribonucleoprotein [Trichophyton tonsurans CBS
112818]
gi|326477364|gb|EGE01374.1| small nuclear ribonucleoprotein [Trichophyton equinum CBS 127.97]
Length = 83
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
+IW+ + G +LGFD+Y+N+VLE E++ K L I+L G+N+ ++
Sbjct: 17 KIWIVMKGDKEFCGTLLGFDDYVNMVLEDVTEFDYSGGQTK-LSKILLNGNNVCML 71
>gi|170576974|ref|XP_001893831.1| small nuclear ribonucleoprotein G [Brugia malayi]
gi|312077085|ref|XP_003141148.1| small nuclear ribonucleoprotein G [Loa loa]
gi|158599912|gb|EDP37330.1| small nuclear ribonucleoprotein G, putative [Brugia malayi]
gi|307763686|gb|EFO22920.1| small nuclear ribonucleoprotein G [Loa loa]
Length = 79
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
Q+ L N N + G + GFD +MNIV+E A E N+K+ + +G ++++G++I +++
Sbjct: 16 QVDLKLNGNRSVSGILRGFDPFMNIVVEDAVE-NLKNGDKNEIGMVVIRGNSIVIME 71
>gi|453082042|gb|EMF10090.1| like-Sm ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 81
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI R + + IW+ + G ++GFD+++N+VLE EY+ K L
Sbjct: 7 PLELIDRCVGS----PIWVIMKGDKEFSGTLMGFDDFVNMVLEDVTEYDYTGAHTK-LKK 61
Query: 78 IMLKGDNIT-LIQNLNPDE 95
I+L G+N+ LI PD+
Sbjct: 62 ILLNGNNVAMLIPGGMPDQ 80
>gi|330038664|ref|XP_003239663.1| small nuclear ribonucleoprotein E [Cryptomonas paramecium]
gi|327206587|gb|AEA38765.1| small nuclear ribonucleoprotein E [Cryptomonas paramecium]
Length = 49
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Query: 46 GHILGFDEYMNIVLESAEEYNIK-SKTRKALGTIMLKGDNITLI 88
G ++GFDE+MN+VL +E Y I S +K LG M+KGD+I +
Sbjct: 3 GKLVGFDEFMNLVL--SESYQIDFSGQKKFLGKAMIKGDSIATV 44
>gi|195222722|ref|NP_001124182.1| U6 snRNA-associated Sm-like protein LSm5 isoform b [Homo sapiens]
gi|213385305|ref|NP_001132971.1| U6 snRNA-associated Sm-like protein LSm5 isoform b [Homo sapiens]
gi|332242764|ref|XP_003270554.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 2
[Nomascus leucogenys]
gi|332242766|ref|XP_003270555.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 3
[Nomascus leucogenys]
gi|332242768|ref|XP_003270556.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 4
[Nomascus leucogenys]
gi|332864463|ref|XP_003318296.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 1
[Pan troglodytes]
gi|332864465|ref|XP_003318297.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 2
[Pan troglodytes]
gi|402863786|ref|XP_003896180.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
2 [Papio anubis]
gi|410058757|ref|XP_003951029.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Pan
troglodytes]
gi|410058759|ref|XP_003951030.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Pan
troglodytes]
gi|426355883|ref|XP_004045333.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
3 [Gorilla gorilla gorilla]
gi|426355885|ref|XP_004045334.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
4 [Gorilla gorilla gorilla]
gi|426355887|ref|XP_004045335.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
5 [Gorilla gorilla gorilla]
gi|426355889|ref|XP_004045336.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
6 [Gorilla gorilla gorilla]
gi|441650806|ref|XP_004091023.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Nomascus
leucogenys]
gi|344235531|gb|EGV91634.1| U6 snRNA-associated Sm-like protein LSm5 [Cricetulus griseus]
Length = 62
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 43 RIEGHILGFDEYMNIVLESAEEYNIKSKTRK--ALGTIMLKGDNITLI 88
I G +LGFD+++N+VLE E+ I + R+ L I+L G+NIT++
Sbjct: 6 EIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITML 53
>gi|242775508|ref|XP_002478658.1| small nuclear ribonucleoprotein (LSM5), putative [Talaromyces
stipitatus ATCC 10500]
gi|218722277|gb|EED21695.1| small nuclear ribonucleoprotein (LSM5), putative [Talaromyces
stipitatus ATCC 10500]
Length = 105
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
+IW+ + G +LGFD+Y+N+VLE E++ K L I+L G+N+ ++
Sbjct: 40 KIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYAGNQEK-LPKILLNGNNVCML 94
>gi|71041581|pdb|1TH7|A Chain A, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041582|pdb|1TH7|B Chain B, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041583|pdb|1TH7|C Chain C, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041584|pdb|1TH7|D Chain D, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041585|pdb|1TH7|E Chain E, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041586|pdb|1TH7|F Chain F, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041587|pdb|1TH7|G Chain G, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041588|pdb|1TH7|H Chain H, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041589|pdb|1TH7|I Chain I, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041590|pdb|1TH7|J Chain J, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041591|pdb|1TH7|K Chain K, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041592|pdb|1TH7|L Chain L, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041593|pdb|1TH7|M Chain M, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041594|pdb|1TH7|N Chain N, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
Length = 81
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 41 NLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNL 91
N + G + +D++MN+VL +EE +K LGTI+++GDN+ LI L
Sbjct: 29 NKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKK-LGTIVIRGDNVILISPL 78
>gi|294084186|ref|YP_003550944.1| DNA topoisomerase I [Candidatus Puniceispirillum marinum IMCC1322]
gi|292663759|gb|ADE38860.1| DNA topoisomerase I [Candidatus Puniceispirillum marinum IMCC1322]
Length = 865
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 40 VNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNPDE 95
V LR G ++ FD Y+++ +ES ++ + K +TR L M +G+N+ QN++P++
Sbjct: 408 VTLRANGQVMVFDGYLSVYMESQDDKDEKDETRSNLLPEMKEGENLD-TQNVSPEQ 462
>gi|396458116|ref|XP_003833671.1| similar to U6 snRNA-associated Sm-like protein LSm5
[Leptosphaeria maculans JN3]
gi|312210219|emb|CBX90306.1| similar to U6 snRNA-associated Sm-like protein LSm5
[Leptosphaeria maculans JN3]
Length = 84
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + + QIW+ N G ++GFD+Y+N+VLE E + S+ L
Sbjct: 8 PLELIDKCVGS----QIWVIMNGGKEFTGKLVGFDDYVNMVLEDVTEID-ASEGNVKLPK 62
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 63 ILLNGNNICMM 73
>gi|15897658|ref|NP_342263.1| small nuclear riboprotein (snRNP-2) [Sulfolobus solfataricus P2]
gi|13813927|gb|AAK41053.1| Small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus P2]
Length = 79
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 41 NLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNL 91
N + G + +D++MN+VL +EE +K LGTI+++GDN+ LI L
Sbjct: 27 NKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKK-LGTIVIRGDNVILISPL 76
>gi|402871503|ref|XP_003899701.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Papio
anubis]
Length = 91
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 30 SRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--ALGTIMLKGDNITL 87
SR+ I + + I G +LGFD+++N+VL+ E+ I + R+ L I+L G+NIT+
Sbjct: 24 SRIHIVMKSDK--EIVGTLLGFDDFVNMVLQDVTEFEITPEGRRITKLDQILLNGNNITM 81
Query: 88 I 88
+
Sbjct: 82 L 82
>gi|145329599|ref|NP_001077949.1| small nuclear ribonucleoprotein [Arabidopsis thaliana]
gi|330252410|gb|AEC07504.1| small nuclear ribonucleoprotein [Arabidopsis thaliana]
Length = 67
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
++QI L N N + G + GFD++MN+V+++ E N KT +G ++++G++I ++
Sbjct: 4 KLQIKL--NANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKT--DIGMVVIRGNSIVTVEA 59
Query: 91 LNP 93
L P
Sbjct: 60 LEP 62
>gi|66804949|ref|XP_636207.1| hypothetical protein DDB_G0289453 [Dictyostelium discoideum AX4]
gi|74852215|sp|Q54HH8.1|SMDL_DICDI RecName: Full=Small nuclear ribonucleoprotein Sm D-like protein
gi|60464569|gb|EAL62706.1| hypothetical protein DDB_G0289453 [Dictyostelium discoideum AX4]
Length = 257
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 48/88 (54%), Gaps = 17/88 (19%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLR--IEGHILGFDEYMNIVLESA-EEYN-------- 66
P++L+ R L+++S++++ + +R G+I+ FD++MNI+L EEY+
Sbjct: 166 PLSLLKRALESKSKIKVMIRGTNCIRGYCRGYIIAFDKHMNIILRDVEEEYDLLKSLPST 225
Query: 67 ------IKSKTRKALGTIMLKGDNITLI 88
I+ K ++ G + +KGD + +
Sbjct: 226 RNQNQPIQPKIKRYYGQLFIKGDTVVSV 253
>gi|194694128|gb|ACF81148.1| unknown [Zea mays]
gi|195637264|gb|ACG38100.1| small nuclear ribonucleoprotein G [Zea mays]
gi|195645546|gb|ACG42241.1| small nuclear ribonucleoprotein G [Zea mays]
gi|413955444|gb|AFW88093.1| Small nuclear ribonucleoprotein G [Zea mays]
Length = 80
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 41/63 (65%), Gaps = 4/63 (6%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
++QI L N N + G + GFD++MN+V+++ E N KT +G ++++G+++ +I+
Sbjct: 17 KLQIKL--NANRVVIGTLRGFDQFMNLVIDNTVEVNGNDKT--DIGMVVIRGNSVVMIEA 72
Query: 91 LNP 93
L P
Sbjct: 73 LEP 75
>gi|169843758|ref|XP_001828604.1| hypothetical protein CC1G_10275 [Coprinopsis cinerea
okayama7#130]
gi|116510312|gb|EAU93207.1| hypothetical protein CC1G_10275 [Coprinopsis cinerea
okayama7#130]
Length = 84
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK-- 73
+ P+ LI R + ++ IW+ + G +LGFD+++N+VLE E+ + RK
Sbjct: 5 ILPLELIDRCIGSK----IWVVMKNDREFTGTLLGFDDFVNMVLEDVTEFENTPQGRKKT 60
Query: 74 ALGTIMLKGDNITLI 88
L +L G+NI ++
Sbjct: 61 KLTQTLLNGNNICML 75
>gi|47026939|gb|AAT08690.1| small nuclear ribonucleoprotein polypeptide G [Hyacinthus
orientalis]
Length = 96
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 30 SRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
S++QI L N N + G + GFD++MN+V+++ E N K +G ++++G+++ +I+
Sbjct: 32 SKLQIKL--NANRVVVGTLRGFDQFMNLVIDNTMEVNGNDKND--IGMVVIRGNSVVMIE 87
Query: 90 NLNP 93
L P
Sbjct: 88 ALEP 91
>gi|357122008|ref|XP_003562708.1| PREDICTED: probable small nuclear ribonucleoprotein G-like
[Brachypodium distachyon]
Length = 80
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
++QI L N N + G + GFD++MN+V+++ E N R +G ++L+G+++ +I+
Sbjct: 17 KLQIKL--NANRVVIGTLRGFDQFMNLVVDNTVEVN--GNDRNDIGMVVLRGNSVVMIEA 72
Query: 91 LNP 93
L P
Sbjct: 73 LEP 75
>gi|21228485|ref|NP_634407.1| small nuclear riboprotein-like protein [Methanosarcina mazei Go1]
gi|20906968|gb|AAM32079.1| Small nuclear riboprotein-like protein [Methanosarcina mazei Go1]
Length = 74
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 30 SRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
SR+Q+ + ++NL +EG + D+YMN+ L E +K + ++LG+++L+G+NI LI
Sbjct: 13 SRIQVEMKGDLNL-LEGTLKSVDDYMNLHLVDTMEI-VKGEKVRSLGSVVLRGNNIILI 69
>gi|118483312|gb|ABK93558.1| unknown [Populus trichocarpa]
Length = 80
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
++QI L N N + G + GFD++MN+V+++ E N KT +G ++L+G+++ ++
Sbjct: 17 KLQIKL--NANRMVVGTLRGFDQFMNLVVDNTVEVNGDEKT--DIGMVVLRGNSVVTVEA 72
Query: 91 LNP 93
L P
Sbjct: 73 LEP 75
>gi|452837763|gb|EME39705.1| hypothetical protein DOTSEDRAFT_75376 [Dothistroma septosporum
NZE10]
Length = 80
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI R + + IW+ + G +LGFD+++N+VLE E++ K L
Sbjct: 7 PLELIDRCVGS----PIWVIMKGDKEFSGTLLGFDDFVNMVLEDVTEHDYTGAKTK-LPK 61
Query: 78 IMLKGDNIT-LIQNLNPDE 95
I+L G+N+ LI PD+
Sbjct: 62 ILLNGNNVCMLIPGGMPDQ 80
>gi|427785997|gb|JAA58450.1| Putative u6 snrna-associated sm-like protein [Rhipicephalus
pulchellus]
Length = 90
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ LI + + S++ I + + I G +LGFD+++N+VLE EY + R+ L
Sbjct: 13 PLELIDKCIG--SKIHIIMKSDK--EIVGTLLGFDDFVNMVLEDVTEYESTPEGRRITKL 68
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 69 DQILLNGNNITMM 81
>gi|400596491|gb|EJP64262.1| putative U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5 [Beauveria
bassiana ARSEF 2860]
Length = 82
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + +R IW+ G ++GFD+Y+N+VLE E++ K L
Sbjct: 7 PLELIDKCVGSR----IWVIMKGEKEFSGTLVGFDDYVNMVLEDVTEFDYTGNHTK-LPK 61
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 62 ILLNGNNICML 72
>gi|393246346|gb|EJD53855.1| mRNA processing-related protein [Auricularia delicata TFB-10046
SS5]
Length = 81
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKAL 75
V P+N FLQ+ + +W+ L G ++ D YMN+ L +AEEY K+ L
Sbjct: 4 VAPVNPK-PFLQDLTGKSVWVRLKWGLEYRGFLVSTDAYMNLQLANAEEYQ-DGKSNGTL 61
Query: 76 GTIMLKGDNITLIQ 89
G I ++ +N+ I+
Sbjct: 62 GEIFIRCNNVLYIR 75
>gi|346470761|gb|AEO35225.1| hypothetical protein [Amblyomma maculatum]
Length = 90
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ LI + + S++ I + + I G +LGFD+++N+VLE EY + R+ L
Sbjct: 13 PLELIDKCIG--SKIHIIMKSDK--EIVGTLLGFDDFVNMVLEDVTEYESTPEGRRITKL 68
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 69 DQILLNGNNITMM 81
>gi|91078636|ref|XP_968589.1| PREDICTED: similar to Lsm5 protein [Tribolium castaneum]
gi|270004060|gb|EFA00508.1| hypothetical protein TcasGA2_TC003372 [Tribolium castaneum]
Length = 89
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 11 VQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK 70
V + P+ L+ + + SR+ I + + I G +LGFD+++N++LE EY +
Sbjct: 6 VSSSTLLPLELVDKCIG--SRIHIIMKNDK--EIVGTLLGFDDFVNMLLEDVTEYETTPE 61
Query: 71 TRK--ALGTIMLKGDNITLI 88
R+ L I+L G+NIT++
Sbjct: 62 GRRITKLDQILLNGNNITML 81
>gi|302348719|ref|YP_003816357.1| hypothetical protein ASAC_0920 [Acidilobus saccharovorans 345-15]
gi|302329131|gb|ADL19326.1| hypothetical protein ASAC_0920 [Acidilobus saccharovorans 345-15]
Length = 78
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 34/46 (73%), Gaps = 2/46 (4%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
++G + FD+++N+VLE+AEE + + ++LGT++++GD+I I
Sbjct: 32 VKGVLKSFDQHLNLVLENAEE--LTERGSRSLGTVLVRGDSIVAIS 75
>gi|209881570|ref|XP_002142223.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209557829|gb|EEA07874.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 92
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 41 NLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNPDEVK 97
N+ +G + +D+YMN +L EE+ I + ALGT+ ++ +NI I+ +P +V+
Sbjct: 29 NIEYKGTLESYDDYMNFLLRDCEEW-IDGTVKGALGTVFIRCNNILYIREKDPLKVE 84
>gi|242040617|ref|XP_002467703.1| hypothetical protein SORBIDRAFT_01g032730 [Sorghum bicolor]
gi|241921557|gb|EER94701.1| hypothetical protein SORBIDRAFT_01g032730 [Sorghum bicolor]
Length = 81
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 41/63 (65%), Gaps = 4/63 (6%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
++QI L N N + G + GFD++MN+V+++ E N KT +G ++++G+++ +I+
Sbjct: 17 KLQIKL--NANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKT--DIGMVVIRGNSVVMIEA 72
Query: 91 LNP 93
L P
Sbjct: 73 LEP 75
>gi|393246263|gb|EJD53772.1| LSM-domain-containing protein [Auricularia delicata TFB-10046
SS5]
Length = 100
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNL 91
+++++ ++ G + GFD ++N+VL+ A++ ++ ++ + LGT++++G+++T ++ L
Sbjct: 39 KLFVHIQGGRKVSGTLRGFDIFLNLVLDDAQDESVPAQ-KAPLGTVVIRGNSVTSMETL 96
>gi|149621318|ref|XP_001518812.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Ornithorhynchus anatinus]
Length = 155
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 14/70 (20%)
Query: 30 SRVQIWLYENVNLRIE------GHILGFDEYMNIVLESAEEYNI--------KSKTRKAL 75
+R+Q WL+ V + I+ G + FD +MN+VL EE+ + + ++ L
Sbjct: 6 NRMQQWLHYRVRVSIKDGRKFVGTFIAFDRHMNLVLADCEEFRLTLNKGLKEPIEVKRTL 65
Query: 76 GTIMLKGDNI 85
G I+L+G+NI
Sbjct: 66 GFILLRGENI 75
>gi|66363282|ref|XP_628607.1| U6 snRNA-associated Sm-like protein LSm5. SM domain
[Cryptosporidium parvum Iowa II]
gi|90109709|pdb|2FWK|A Chain A, Crystal Structure Of Cryptosporidium Parvum U6 Snrna-
Associated Sm-Like Protein Lsm5
gi|90109710|pdb|2FWK|B Chain B, Crystal Structure Of Cryptosporidium Parvum U6 Snrna-
Associated Sm-Like Protein Lsm5
gi|321159967|pdb|3PGG|A Chain A, Crystal Structure Of Cryptosporidium Parvum U6
Snrna-Associated Sm- Like Protein Lsm5
gi|321159968|pdb|3PGG|B Chain B, Crystal Structure Of Cryptosporidium Parvum U6
Snrna-Associated Sm- Like Protein Lsm5
gi|46229827|gb|EAK90645.1| U6 snRNA-associated Sm-like protein LSm5. SM domain
[Cryptosporidium parvum Iowa II]
Length = 121
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 19/96 (19%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
++ P+ LI + + NR I++ + G + GFDEY+N+VL+ +EY K+
Sbjct: 26 IILPLALIDKCIGNR----IYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDI 81
Query: 75 LG--------------TIMLKGDNIT-LIQNLNPDE 95
G TI+L G+N+ L+ +PD
Sbjct: 82 SGGNKKLKRVMVNRLETILLSGNNVAMLVPGGDPDS 117
>gi|403170432|ref|XP_003329769.2| small nuclear ribonucleoprotein G [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375168717|gb|EFP85350.2| small nuclear ribonucleoprotein G [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 78
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 41/61 (67%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
+++L N ++ G + GFD ++N+VL+ A+E +++ ++ +G I+++G++++ I+ L
Sbjct: 16 RLFLNLQGNRKLSGVLRGFDIFLNLVLDEAQEESLEGGEKRKMGLIVIRGNSVSSIETLE 75
Query: 93 P 93
Sbjct: 76 A 76
>gi|73671030|ref|YP_307045.1| small nuclear riboprotein-like protein [Methanosarcina barkeri
str. Fusaro]
gi|72398192|gb|AAZ72465.1| Small nuclear ribonucleoprotein, LSM family [Methanosarcina
barkeri str. Fusaro]
Length = 74
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 30 SRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
SR+Q+ + ++NL +EG + D+YMN+ L E +K + ++LG+++L+G+NI LI
Sbjct: 13 SRIQVEMKGDLNL-LEGTLKSVDDYMNLHLVDTMEI-VKGEKVRSLGSVVLRGNNIILI 69
>gi|296242979|ref|YP_003650466.1| LSM family small nuclear ribonucleoprotein [Thermosphaera
aggregans DSM 11486]
gi|296095563|gb|ADG91514.1| Small nuclear ribonucleoprotein, LSM family [Thermosphaera
aggregans DSM 11486]
Length = 76
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 32 VQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
V I + +++ LR G + +D+++NIVL+ EE TRK LGT++++GD + I
Sbjct: 17 VLIKIKDDITLR--GKLRSYDQHLNIVLDDVEEIGEGGSTRK-LGTVVIRGDTVVFIS 71
>gi|281208052|gb|EFA82230.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 86
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA- 74
V P+ LI + + +R IW+ + G +LGFD Y+NI L+ EY + K
Sbjct: 6 VLPLELIEKCIGSR----IWICMKNDKEFVGTLLGFDTYVNIFLKDVTEYEFTPEGIKPI 61
Query: 75 -LGTIMLKGDNITLI 88
L TI+L G+++ L+
Sbjct: 62 KLETILLNGNHVCLL 76
>gi|449067225|ref|YP_007434307.1| hypothetical protein SacN8_05970 [Sulfolobus acidocaldarius N8]
gi|449069496|ref|YP_007436577.1| hypothetical protein SacRon12I_05965 [Sulfolobus acidocaldarius
Ron12/I]
gi|449035733|gb|AGE71159.1| hypothetical protein SacN8_05970 [Sulfolobus acidocaldarius N8]
gi|449038004|gb|AGE73429.1| hypothetical protein SacRon12I_05965 [Sulfolobus acidocaldarius
Ron12/I]
Length = 73
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
+ G + +D +MN+VLE++EE TRK +GTI+++GDN+ L+
Sbjct: 27 VRGTLKSYDMHMNLVLENSEEIMNDGSTRK-VGTIVIRGDNVILVS 71
>gi|70606993|ref|YP_255863.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM
639]
gi|68567641|gb|AAY80570.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM
639]
Length = 79
Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
+ G + +D +MN+VLE++EE TRK +GTI+++GDN+ L+
Sbjct: 33 VRGTLKSYDMHMNLVLENSEEIMNDGSTRK-VGTIVIRGDNVILVS 77
>gi|15229773|ref|NP_187757.1| small nuclear ribonucleoprotein G [Arabidopsis thaliana]
gi|297833932|ref|XP_002884848.1| hypothetical protein ARALYDRAFT_478489 [Arabidopsis lyrata subsp.
lyrata]
gi|12322914|gb|AAG51452.1|AC008153_25 putative small nuclear ribonucleoprotein polypeptide G;
65009-64161 [Arabidopsis thaliana]
gi|17065484|gb|AAL32896.1| putative small nuclear ribonucleoprotein polypeptide G
[Arabidopsis thaliana]
gi|24899751|gb|AAN65090.1| putative small nuclear ribonucleoprotein polypeptide G
[Arabidopsis thaliana]
gi|297330688|gb|EFH61107.1| hypothetical protein ARALYDRAFT_478489 [Arabidopsis lyrata subsp.
lyrata]
gi|332641534|gb|AEE75055.1| small nuclear ribonucleoprotein G [Arabidopsis thaliana]
Length = 79
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
++QI L N N + G + GFD++MN+V+++ E N KT +G ++++G++I ++
Sbjct: 17 KLQIKL--NANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKT--DIGMVVIRGNSIVTVEA 72
Query: 91 LNP 93
L P
Sbjct: 73 LEP 75
>gi|145348592|ref|XP_001418730.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578960|gb|ABO97023.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 93
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
A +V P L+ R + + +W+ + G + GFD Y+N+VLE EY
Sbjct: 7 AANANPSLVLPSELVERCVGS----PLWVLMKSERELVGTLRGFDVYVNMVLEDVTEYET 62
Query: 68 KSKTRKALG---TIMLKGDNITLI 88
++ R+ G I+L G+NI ++
Sbjct: 63 TAEGRRVTGRLDQILLNGNNIAML 86
>gi|401412392|ref|XP_003885643.1| hypothetical protein NCLIV_060400 [Neospora caninum Liverpool]
gi|325120063|emb|CBZ55615.1| hypothetical protein NCLIV_060400 [Neospora caninum Liverpool]
Length = 169
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 21/89 (23%)
Query: 30 SRVQIWLYENVNLRIE------GHILGFDEYMNIVLESAEEY---NIKSK---------- 70
+R+Q W+ V + ++ G +L FD +MNIVL AEE+ I+ K
Sbjct: 6 ARLQQWINYRVRVCLQDSRMLVGSLLAFDRHMNIVLADAEEFRKLKIRHKLADGKHQTEE 65
Query: 71 --TRKALGTIMLKGDNITLIQNLNPDEVK 97
++++G +M++G+NI + P K
Sbjct: 66 KEVKRSVGLMMIRGENILTLTAEAPPPAK 94
>gi|116780179|gb|ABK21578.1| unknown [Picea sitchensis]
gi|116780948|gb|ABK21894.1| unknown [Picea sitchensis]
Length = 80
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNP 93
N N + G + GFD++MN+VL+ E N R +G ++++G+++ +I+ L P
Sbjct: 23 NANRVVVGTLRGFDQFMNLVLDGTVEVN--GNERNEIGMVVIRGNSVVMIEALEP 75
>gi|290561451|gb|ADD38126.1| U6 snRNA-associated Sm-like protein LSm5 [Lepeophtheirus
salmonis]
Length = 95
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 5 FKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEE 64
+AP ++ P+ L+ + + SR+ I + + I G +LGFD+++N+VLE E
Sbjct: 4 ISVAPNPSTIL--PLELVDKAIG--SRIHIIMKNDK--EIVGTLLGFDDFVNMVLEDVTE 57
Query: 65 YNIKSKTRKA--LGTIMLKGDNITLI 88
Y + R+ L I+L G++IT++
Sbjct: 58 YESTPEGRRVSKLDQILLNGNHITML 83
>gi|290561032|gb|ADD37918.1| U6 snRNA-associated Sm-like protein LSm5 [Lepeophtheirus
salmonis]
Length = 95
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 5 FKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEE 64
+AP ++ P+ L+ + + SR+ I + + I G +LGFD+++N+VLE E
Sbjct: 4 ISVAPNPSTIL--PLELVDKAIG--SRIHIIMKNDK--EIVGTLLGFDDFVNMVLEDVTE 57
Query: 65 YNIKSKTRKA--LGTIMLKGDNITLI 88
Y + R+ L I+L G++IT++
Sbjct: 58 YESTPEGRRVSKLDQILLNGNHITML 83
>gi|395645347|ref|ZP_10433207.1| Like-Sm ribonucleoprotein core [Methanofollis liminatans DSM
4140]
gi|395442087|gb|EJG06844.1| Like-Sm ribonucleoprotein core [Methanofollis liminatans DSM
4140]
Length = 78
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
+V P+ ++ + +R V+I ++ +++G ++ DE++N+ +E EY + + R +
Sbjct: 5 IVLPVKKVYSLVDSRINVEI---KDEGRKLQGRLVAVDEHLNLHMEETIEYTGEQRGR-S 60
Query: 75 LGTIMLKGDNITLIQNL 91
LGT++++G+NI I L
Sbjct: 61 LGTVVIRGNNILTISPL 77
>gi|284161893|ref|YP_003400516.1| Sm ribonucleoprotein-like protein [Archaeoglobus profundus DSM
5631]
gi|284011890|gb|ADB57843.1| Like-Sm ribonucleoprotein core [Archaeoglobus profundus DSM 5631]
Length = 75
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
G + G D+YMN+ L +A E K R LGTI+L+G+NI +IQ L+
Sbjct: 28 GVLEGVDDYMNLCLTNAMECKNGEKIRN-LGTIVLRGNNIVIIQPLD 73
>gi|193582383|ref|XP_001951255.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Acyrthosiphon pisum]
Length = 91
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P+ L+ + + SR+ I + + I G +LGFD+++N++LE EY + R+ L
Sbjct: 14 PLELVDKCIG--SRIHIVMKNDK--EIVGTLLGFDDFVNMLLEDVTEYESTPEGRRVTKL 69
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 70 DQILLNGNNITML 82
>gi|225711834|gb|ACO11763.1| Small nuclear ribonucleoprotein G [Lepeophtheirus salmonis]
gi|225714162|gb|ACO12927.1| Small nuclear ribonucleoprotein G [Lepeophtheirus salmonis]
gi|290562395|gb|ADD38594.1| Small nuclear ribonucleoprotein G [Lepeophtheirus salmonis]
Length = 79
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
RVQ+ L N + +EG + G+D +MN+VLE E K R +GTI+++G++I +++
Sbjct: 18 RVQLKL--NASRNMEGILRGYDPFMNLVLEEGIE-TTKQGHRNPVGTIVIRGNSIVMLE 73
>gi|302831688|ref|XP_002947409.1| hypothetical protein VOLCADRAFT_87780 [Volvox carteri f.
nagariensis]
gi|300267273|gb|EFJ51457.1| hypothetical protein VOLCADRAFT_87780 [Volvox carteri f.
nagariensis]
Length = 74
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
++ ++ N N + G + GFD++MN+VL+ + K + +G ++++G++I I+ L
Sbjct: 16 KLSIHLNANRHVSGTLRGFDQFMNVVLDQT----VDEKLKVDIGMVVIRGNSIQTIEALE 71
Query: 93 P 93
P
Sbjct: 72 P 72
>gi|302768987|ref|XP_002967913.1| hypothetical protein SELMODRAFT_227744 [Selaginella
moellendorffii]
gi|300164651|gb|EFJ31260.1| hypothetical protein SELMODRAFT_227744 [Selaginella
moellendorffii]
Length = 81
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNP 93
N N + G + GFD++MN+VL++ E I R +G ++++G+++ +I+ L P
Sbjct: 23 NANRVVVGVLRGFDQFMNLVLDNTME--ISGNERTEIGMVVIRGNSVAMIEALEP 75
>gi|269986972|gb|EEZ93248.1| Like-Sm ribonucleoprotein core [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 78
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 11 VQKVMVQPINLIFRFLQNRSRVQIWLYENVNLR-IEGHILGFDEYMNIVLESAEEYNIKS 69
+ V+ +P++L+ N ++ ++ L E N I G ++ FD ++N+ LE+AEE
Sbjct: 2 AENVLSRPLDLL-----NSAKGKMVLVELKNGHAITGKLVAFDVHINVTLENAEEKKDAD 56
Query: 70 KTRKALGTIMLKGDNITLIQ 89
RK LG + ++GD I LI
Sbjct: 57 TLRK-LGNVFIRGDTIILIS 75
>gi|195645046|gb|ACG41991.1| small nuclear ribonucleoprotein G [Zea mays]
Length = 73
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNP 93
N N + G + GFD++MN+V+++ E N KT +G ++++G+++ +I+ L P
Sbjct: 16 NANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKT--DIGMVVIRGNSVVMIEALEP 68
>gi|429216595|ref|YP_007174585.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
gi|429133124|gb|AFZ70136.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
Length = 79
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 41 NLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
N ++G + +D+++N++LE AEE ++ K + LG ++L+GDN+ +
Sbjct: 30 NREVKGILTSYDQHLNLILEKAEE--LEGKVSRPLGLVLLRGDNVIAVS 76
>gi|374633102|ref|ZP_09705469.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
gi|373524586|gb|EHP69463.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
Length = 78
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 14/85 (16%)
Query: 5 FKMAPKVQKVMVQPI-NLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
++MA K++ + + NL+ L+ N + G + +D++MN+VL +E
Sbjct: 2 YRMAETAHKLLAESLGNLVLVKLKG------------NKEVRGLLKSYDQHMNLVLSDSE 49
Query: 64 EYNIKSKTRKALGTIMLKGDNITLI 88
E +K +GTI+++GDN+ LI
Sbjct: 50 EIQSDGGGKK-MGTIVIRGDNVILI 73
>gi|145527883|ref|XP_001449741.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417330|emb|CAK82344.1| unnamed protein product [Paramecium tetraurelia]
Length = 85
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS--KTRKALGTIMLKGDNITLIQN 90
QI++ N+ ++G ++ +D ++N+++ AEE + + KT++ L + L+GD I LI
Sbjct: 18 QIYIKMRNNIELKGTLVSYDNHLNMIISKAEETSFQEGIKTKRKLDALYLRGDGIILISP 77
Query: 91 L 91
L
Sbjct: 78 L 78
>gi|90407655|ref|ZP_01215835.1| phnA protein [Psychromonas sp. CNPT3]
gi|90311246|gb|EAS39351.1| phnA protein [Psychromonas sp. CNPT3]
Length = 197
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 23 FRFLQNRSRVQIWLYENVNLR-IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLK 81
FR L S+ +IW + +++ +E + +Y + + EE + TR + G+I+L
Sbjct: 81 FRLLTRLSKTEIWAQDLLDMMYLEDETRAWADY-GVAADDIEEV---APTRDSNGSILLA 136
Query: 82 GDNITLIQNLN 92
GDN+TLI++L+
Sbjct: 137 GDNVTLIKDLD 147
>gi|226509589|ref|NP_001148720.1| small nuclear ribonucleoprotein G [Zea mays]
gi|194698570|gb|ACF83369.1| unknown [Zea mays]
gi|195609740|gb|ACG26700.1| small nuclear ribonucleoprotein G [Zea mays]
gi|195621638|gb|ACG32649.1| small nuclear ribonucleoprotein G [Zea mays]
gi|195656303|gb|ACG47619.1| small nuclear ribonucleoprotein G [Zea mays]
gi|414867200|tpg|DAA45757.1| TPA: Small nuclear ribonucleoprotein G [Zea mays]
Length = 80
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNP 93
N N + G + GFD++MN+V+++ E N KT +G ++++G+++ +I+ L P
Sbjct: 23 NANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKT--DIGMVVIRGNSVVMIEALEP 75
>gi|402217704|gb|EJT97783.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 85
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ LI R + +R IW+ G +LGFD+++N+VLE E+ + K L
Sbjct: 7 PLELIDRCIGSR----IWVITKTEREFAGRLLGFDDFVNMVLEDVTEFITTEEGVKKVKL 62
Query: 76 GTIMLKGDNITLI 88
+L G+NI ++
Sbjct: 63 QQTLLNGNNICML 75
>gi|126179510|ref|YP_001047475.1| like-Sm ribonucleoprotein, core [Methanoculleus marisnigri JR1]
gi|125862304|gb|ABN57493.1| Small nuclear ribonucleoprotein, LSM family [Methanoculleus
marisnigri JR1]
Length = 78
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
+V P+ +F + ++ V+I ++ + +++G ++ DE++N+ ++ EY + + R
Sbjct: 5 IVLPVKKVFSLVDSKITVEI---KDDSRKLQGRLVAVDEHLNLHMDETTEYTGEQRGR-T 60
Query: 75 LGTIMLKGDNITLIQNL 91
LGT++++G+NI I L
Sbjct: 61 LGTVVIRGNNILTIAPL 77
>gi|399217788|emb|CCF74675.1| unnamed protein product [Babesia microti strain RI]
Length = 138
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 15/71 (21%)
Query: 30 SRVQIWLYENV------NLRIEGHILGFDEYMNIVLESAEEYNIKSKT---------RKA 74
+R+Q WL V N R G + FD +MN+VL EEY + K ++
Sbjct: 5 TRMQQWLNYRVRVIIKDNRRFIGVFIAFDRHMNLVLADCEEYRMIKKQPSDKEPVEIKRT 64
Query: 75 LGTIMLKGDNI 85
LG ++L+G+N+
Sbjct: 65 LGFVLLRGENV 75
>gi|147921633|ref|YP_684550.1| small nuclear ribonucleoprotein [Methanocella arvoryzae MRE50]
gi|121685694|sp|Q0W8R9.1|RUXX_UNCMA RecName: Full=Putative snRNP Sm-like protein
gi|110619946|emb|CAJ35224.1| putative small nuclear ribonucleoprotein (snRNP) Sm-like protein
[Methanocella arvoryzae MRE50]
Length = 72
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
G + G+D +MN+VL++AEE +RK LGTI+++GD + +
Sbjct: 29 GELQGYDMHMNLVLDNAEELKENEASRK-LGTIIVRGDTVVYVS 71
>gi|219117519|ref|XP_002179554.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409445|gb|EEC49377.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 165
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 15/75 (20%)
Query: 22 IFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY-NIKSKT--------- 71
+ R++++R RV L++ + I G L FD+++N+VL AEE+ +KSK
Sbjct: 9 LLRYVEHRLRVT--LHDGRS--IVGTFLAFDKHLNLVLSEAEEFRTLKSKGGAALLEERT 64
Query: 72 -RKALGTIMLKGDNI 85
+++LG ++++G+N+
Sbjct: 65 EKRSLGLVLIRGENV 79
>gi|414867201|tpg|DAA45758.1| TPA: small nuclear ribonucleoprotein G [Zea mays]
Length = 67
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNP 93
N N + G + GFD++MN+V+++ E N KT +G ++++G+++ +I+ L P
Sbjct: 10 NANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKT--DIGMVVIRGNSVVMIEALEP 62
>gi|169601618|ref|XP_001794231.1| hypothetical protein SNOG_03677 [Phaeosphaeria nodorum SN15]
gi|160705976|gb|EAT88882.2| hypothetical protein SNOG_03677 [Phaeosphaeria nodorum SN15]
Length = 86
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + + QIW+ N G ++GFD+Y+N+VLE E + K L
Sbjct: 8 PLELIDKCVGS----QIWVIMNGGKEFTGKLVGFDDYVNMVLEEVTEIDPAEGNVK-LPK 62
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 63 ILLNGNNICMM 73
>gi|84998502|ref|XP_953972.1| (U6) snRNA-associated Sm-like protein [Theileria annulata]
gi|65304970|emb|CAI73295.1| (U6) snRNA-associated Sm-like protein, putative [Theileria
annulata]
Length = 90
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P+ LI + L ++ IW+ + I G + GFD+YMN+VLE +Y+ + K L
Sbjct: 12 PLALIDKCLGSK----IWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYSFSADGVKTTEL 67
Query: 76 GTIMLKGDNITLI 88
++ G+N+ ++
Sbjct: 68 NDALVNGNNVAML 80
>gi|219884693|gb|ACL52721.1| unknown [Zea mays]
gi|413955445|gb|AFW88094.1| hypothetical protein ZEAMMB73_159101 [Zea mays]
Length = 74
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNP 93
N N + G + GFD++MN+V+++ E N KT +G ++++G+++ +I+ L P
Sbjct: 17 NANRVVIGTLRGFDQFMNLVIDNTVEVNGNDKTD--IGMVVIRGNSVVMIEALEP 69
>gi|154275866|ref|XP_001538778.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150413851|gb|EDN09216.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 104
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 41 NLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
N G +LGFD+Y+N+VLE E++ K L I+L G+NI ++
Sbjct: 46 NSEFSGTLLGFDDYVNMVLEDVTEFDYTGSQTK-LSKILLNGNNICML 92
>gi|408404869|ref|YP_006862852.1| small nuclear ribonucleoprotein [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365465|gb|AFU59195.1| putative small nuclear ribonucleoprotein [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 76
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
I G++ GFD++MN++LE + E + K+ LGTI+++GDN+ +I
Sbjct: 28 IRGNLHGFDQHMNLLLEDSVEILEEGKSND-LGTIVVRGDNVVIIS 72
>gi|452980574|gb|EME80335.1| hypothetical protein MYCFIDRAFT_89886 [Pseudocercospora fijiensis
CIRAD86]
Length = 81
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI R + + IW+ + G + GFD+++N+VLE EY+ K L
Sbjct: 7 PLELIDRCVGS----PIWVIMKGDKEFSGTLQGFDDFVNMVLEDVTEYDYTGAHTK-LNK 61
Query: 78 IMLKGDNIT-LIQNLNPDE 95
I+L G+NI LI PD+
Sbjct: 62 ILLNGNNICMLIPGGMPDQ 80
>gi|242023983|ref|XP_002432410.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212517833|gb|EEB19672.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 91
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + SR+ I + + I G +LGFD+++N++LE EY + R+ L
Sbjct: 14 PLELVDKCIG--SRIHIIMKNDK--EIVGTLLGFDDFVNMLLEDVTEYESTPEGRRITKL 69
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 70 DQILLNGNNITML 82
>gi|393218481|gb|EJD03969.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 85
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA- 74
V P+ LI + +R IW+ + G +LGFD+++N+VL+ EY + RK
Sbjct: 5 VLPLELIDTCIGSR----IWVIMKNDREFTGTLLGFDDFVNMVLDDVTEYQYLPEGRKVT 60
Query: 75 -LGTIMLKGDNITLI 88
L +L G+NI ++
Sbjct: 61 MLRQTLLNGNNICML 75
>gi|225710716|gb|ACO11204.1| Small nuclear ribonucleoprotein G [Caligus rogercresseyi]
Length = 79
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
RVQ+ L N + +EG + G+D +MN+VLE E K R +GT++++G++I +++
Sbjct: 18 RVQLKL--NASRNMEGILRGYDPFMNLVLEEGIE-TTKQGHRNPVGTVVIRGNSIVMLE 73
>gi|359477805|ref|XP_003632024.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 2
[Vitis vinifera]
Length = 88
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN-IKSKTRK--A 74
P LI R + ++ IW+ + + G + GFD Y+N+VLE EY+ I S+ R+
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYSEITSEGRRITK 65
Query: 75 LGTIMLKGDNIT-LIQNLNPD 94
L I+L G+NI L+ +PD
Sbjct: 66 LDQILLNGNNIAILVPGGSPD 86
>gi|451848655|gb|EMD61960.1| hypothetical protein COCSADRAFT_147219 [Cochliobolus sativus
ND90Pr]
gi|451998469|gb|EMD90933.1| hypothetical protein COCHEDRAFT_1021722 [Cochliobolus
heterostrophus C5]
Length = 86
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + + QIW+ N G ++GFD+Y+N+VLE+ E + ++ L
Sbjct: 8 PLELIDKCVGS----QIWVIMNGGKEFTGKLVGFDDYVNMVLENVTEID-PAEGNVQLPK 62
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 63 ILLNGNNICMM 73
>gi|386875165|ref|ZP_10117354.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
gi|386807044|gb|EIJ66474.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
Length = 79
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Query: 26 LQNRSRVQIWLYENVNLR-IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDN 84
L N S+ ++ L N + ++G ++ FD +MN+ L++AE+ + + KT K LG I+L+GDN
Sbjct: 11 LMNNSKDKVVLLRLRNTKTVQGTLIDFDIHMNLTLDNAEDIS-EGKTEK-LGKILLRGDN 68
Query: 85 I 85
I
Sbjct: 69 I 69
>gi|403221170|dbj|BAM39303.1| uncharacterized protein TOT_010000762 [Theileria orientalis
strain Shintoku]
Length = 90
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P+ LI + L ++ IW+ + I G + GFD+YMN+VLE +Y ++ + L
Sbjct: 12 PLALIDKCLGSK----IWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYTYTAEGVRTTEL 67
Query: 76 GTIMLKGDNIT-LIQNLNPDEVK 97
++ G+ I L+ PD+VK
Sbjct: 68 PDALVNGNYIAMLVPGGKPDDVK 90
>gi|290999453|ref|XP_002682294.1| predicted protein [Naegleria gruberi]
gi|284095921|gb|EFC49550.1| predicted protein [Naegleria gruberi]
Length = 103
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 46/78 (58%), Gaps = 8/78 (10%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI----KSK 70
++QP+ LI + + + I++ + + G + GFD+Y+N++L++ EY+ S+
Sbjct: 12 IIQPLELIDKCIGS----SIFVLMKDDKELVGTLRGFDDYINMILDNVTEYSYSEDGSSR 67
Query: 71 TRKALGTIMLKGDNITLI 88
T L +I+L G+N+ ++
Sbjct: 68 TESKLPSIILNGNNVAIL 85
>gi|357159383|ref|XP_003578429.1| PREDICTED: probable small nuclear ribonucleoprotein G-like
isoform 1 [Brachypodium distachyon]
gi|357159386|ref|XP_003578430.1| PREDICTED: probable small nuclear ribonucleoprotein G-like
isoform 2 [Brachypodium distachyon]
Length = 81
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNP 93
N N + G + GFD++MN+V+++ E N KT +G ++++G+++ +I+ L P
Sbjct: 23 NANRVVIGTLRGFDQFMNLVVDNTVEVNGNEKT--DIGMVVVRGNSVVMIEALEP 75
>gi|224088536|ref|XP_002308466.1| predicted protein [Populus trichocarpa]
gi|222854442|gb|EEE91989.1| predicted protein [Populus trichocarpa]
Length = 80
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
++QI L N N + G + GFD++MN+V+++ E N KT +G ++++G+++ ++
Sbjct: 17 KLQIKL--NANRMVVGTLRGFDQFMNLVVDNTVEVNGDEKT--DIGMVVIRGNSVVTVEA 72
Query: 91 LNP 93
L P
Sbjct: 73 LEP 75
>gi|255578959|ref|XP_002530332.1| small nuclear ribonucleoprotein G, putative [Ricinus communis]
gi|223530136|gb|EEF32048.1| small nuclear ribonucleoprotein G, putative [Ricinus communis]
Length = 80
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
++QI L N N + G + GFD++MN+V+++ E N KT +G ++++G+++ ++
Sbjct: 17 KLQIKL--NANRMVVGTLRGFDQFMNLVVDNTVEVNGDEKT--DIGMVVIRGNSVVTVEA 72
Query: 91 LNP 93
L P
Sbjct: 73 LEP 75
>gi|225440849|ref|XP_002282193.1| PREDICTED: probable small nuclear ribonucleoprotein G [Vitis
vinifera]
gi|297740131|emb|CBI30313.3| unnamed protein product [Vitis vinifera]
Length = 80
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
++QI L N N + G + GFD++MN+V+++ E N KT +G ++++G+++ ++
Sbjct: 17 KLQIKL--NANRMVVGTLRGFDQFMNLVVDNTVEVNGNEKT--DIGMVVIRGNSVVTVEA 72
Query: 91 LNP 93
L P
Sbjct: 73 LEP 75
>gi|159471089|ref|XP_001693689.1| small nuclear ribonucleoprotein polypeptide G [Chlamydomonas
reinhardtii]
gi|158283192|gb|EDP08943.1| small nuclear ribonucleoprotein polypeptide G [Chlamydomonas
reinhardtii]
Length = 77
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGD 83
RF+ + + + N N + G + GFD++MN+VL++ + K + +G ++++G+
Sbjct: 11 RFMDKKLSITL----NANRHVSGTLRGFDQFMNLVLDAT----VDEKLKVDIGMVVIRGN 62
Query: 84 NITLIQNLNP 93
+I I+ L P
Sbjct: 63 SIQTIEALEP 72
>gi|209879283|ref|XP_002141082.1| small nuclear ribonucleoprotein G [Cryptosporidium muris RN66]
gi|209556688|gb|EEA06733.1| small nuclear ribonucleoprotein G, putative [Cryptosporidium
muris RN66]
Length = 81
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGD 83
RF+ R +++ N I G + G+D +MN+VLE+ E + SK K +GT++++G+
Sbjct: 14 RFMDKRLDIKL----NGKRHIVGLLRGYDNFMNLVLENTVE--VTSKGNKEIGTVIIRGN 67
Query: 84 NITLIQNLNPDEVK 97
++ + + L+ +K
Sbjct: 68 SVVMWECLDKVHIK 81
>gi|340369286|ref|XP_003383179.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Amphimedon queenslandica]
Length = 108
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 30 SRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--ALGTIMLKGDNITL 87
SR+ I + ++ + I G +LGFD+++N+VLE E+ + + R+ L I+L G+NI +
Sbjct: 44 SRIHIIM-KSSDKEIVGTLLGFDDFVNVVLEDVTEFEMTPEGRRITKLDEILLNGNNIAM 102
Query: 88 I 88
+
Sbjct: 103 L 103
>gi|240273226|gb|EER36748.1| LSM domain-containing protein [Ajellomyces capsulatus H143]
Length = 95
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 25 FLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDN 84
FL + + + N + +G + D YMNI LE EEY + K R++ G ++G+N
Sbjct: 15 FLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEY-VDGKLRRSYGDAFVRGNN 73
Query: 85 ITLIQNL-NPDE 95
+ + +L + DE
Sbjct: 74 VVVAADLFHADE 85
>gi|452825043|gb|EME32042.1| small nuclear ribonucleoprotein G [Galdieria sulphuraria]
Length = 76
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGD 83
R + + VQ+ N N ++EG + G+D++MNIVLE E + K +GT++++G+
Sbjct: 10 RLMDRKVSVQL----NGNRKVEGVLRGYDQFMNIVLEDCVE-KLGPMNDKEIGTVVVRGN 64
Query: 84 NITLIQNL 91
++ +++ L
Sbjct: 65 SVFILEVL 72
>gi|67539018|ref|XP_663283.1| hypothetical protein AN5679.2 [Aspergillus nidulans FGSC A4]
gi|40743582|gb|EAA62772.1| hypothetical protein AN5679.2 [Aspergillus nidulans FGSC A4]
Length = 110
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 42 LRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
L G +LGFD+Y+N+VLE E++ K L I+L G+NI ++
Sbjct: 54 LEFSGTLLGFDDYVNMVLEDVTEFDYTGAQVK-LPKILLNGNNICML 99
>gi|67601363|ref|XP_666392.1| U6 snRNA associated SM-like protein LSM5 [Cryptosporidium hominis
TU502]
gi|54657379|gb|EAL36161.1| U6 snRNA associated SM-like protein LSM5 [Cryptosporidium hominis]
Length = 115
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
++ P+ LI + + NR I++ + G + GFDEY+N+VL+ +EY K+
Sbjct: 20 IILPLALIDKCIGNR----IYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDM 75
Query: 75 LG--------------TIMLKGDNITLI 88
G TI+L G+N+ ++
Sbjct: 76 SGGNKKLKRVMVNRLETILLSGNNVAML 103
>gi|50308811|ref|XP_454410.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643545|emb|CAG99497.1| KLLA0E10209p [Kluyveromyces lactis]
Length = 84
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 31/43 (72%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
G ++GFD+Y+N+V+E+A EY + ++ G ++L G+NI ++
Sbjct: 33 GTLVGFDDYVNVVIENAVEYLEDQEIKRFQGKMLLTGNNIAML 75
>gi|260786161|ref|XP_002588127.1| hypothetical protein BRAFLDRAFT_124953 [Branchiostoma floridae]
gi|229273285|gb|EEN44138.1| hypothetical protein BRAFLDRAFT_124953 [Branchiostoma floridae]
Length = 874
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNL 91
N N ++ G + GFD +MN+V++ E ++ R+++G ++++G++I +++ L
Sbjct: 820 NGNRKVSGILRGFDPFMNLVIDECVE--LRGNERQSIGMVVIRGNSIIMLEAL 870
>gi|124808462|ref|XP_001348319.1| ribonucleoprotein, putative [Plasmodium falciparum 3D7]
gi|23497211|gb|AAN36758.1|AE014818_23 ribonucleoprotein, putative [Plasmodium falciparum 3D7]
Length = 201
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 13/69 (18%)
Query: 30 SRVQIWLYENVNLRIE------GHILGFDEYMNIVLESAEEY-NIKSKT------RKALG 76
SR++ WL V + I G L +D +MNIVL AEE+ +KS+ ++ +G
Sbjct: 5 SRLETWLQYRVRVTISDTRYFVGTFLSYDRHMNIVLVDAEEFRKVKSQENSLKEIKRVVG 64
Query: 77 TIMLKGDNI 85
I+++G+NI
Sbjct: 65 LILIRGENI 73
>gi|195606768|gb|ACG25214.1| small nuclear ribonucleoprotein G [Zea mays]
Length = 80
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNP 93
N N + G + GFD++MN+V+++ E N KT +G ++++G+++ +I+ L P
Sbjct: 23 NANRVVIGTLRGFDQFMNLVVDNIVEVNGNDKT--DIGMVVIRGNSVVMIEALEP 75
>gi|146304997|ref|YP_001192313.1| Sm ribonucleoprotein-like protein [Metallosphaera sedula DSM
5348]
gi|145703247|gb|ABP96389.1| Small nuclear ribonucleoprotein, LSM family [Metallosphaera
sedula DSM 5348]
Length = 75
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 41 NLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
N + G + +D++MN+VL +EE + +K +GTI+++GDN+ LI
Sbjct: 24 NKEVRGLLKSYDQHMNLVLSDSEEIQSDGEGKK-MGTIVIRGDNVILI 70
>gi|209879413|ref|XP_002141147.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556753|gb|EEA06798.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 112
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 17/84 (20%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY------NIKSKT 71
P+ LI + + +R I++ + I G + GFDEY+N+VL+ EEY N +
Sbjct: 22 PLALIDKCIGSR----IYIILRGDREISGTLRGFDEYVNMVLDEVEEYGYTIVMNESASN 77
Query: 72 RK-------ALGTIMLKGDNITLI 88
+K L TI+L G+NI L+
Sbjct: 78 KKLKRVLVNRLDTILLSGNNIALL 101
>gi|195657879|gb|ACG48407.1| small nuclear ribonucleoprotein G [Zea mays]
Length = 67
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNP 93
N N + G + GFD++MN+V+++ E N KT +G ++++G+++ +I+ L P
Sbjct: 10 NANRVVIGTLRGFDQFMNLVVDNIVEVNGNDKT--DIGMVVIRGNSVVMIEALEP 62
>gi|88604287|ref|YP_504465.1| like-Sm ribonucleoprotein, core [Methanospirillum hungatei JF-1]
gi|88189749|gb|ABD42746.1| Small nuclear ribonucleoprotein, LSM family [Methanospirillum
hungatei JF-1]
Length = 80
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 17 QPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALG 76
+P++++ + L NR V I L I+G + G+D +MN+VL+ AEE I +++G
Sbjct: 9 RPMDILDQVL-NRQPVLISLKGG--REIKGVLQGYDVHMNLVLDKAEE--IVQGQAQSIG 63
Query: 77 TIMLKGDNITLI 88
T++++GDN+ I
Sbjct: 64 TLIIRGDNVIYI 75
>gi|325089253|gb|EGC42563.1| LSM domain-containing protein [Ajellomyces capsulatus H88]
Length = 95
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 25 FLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDN 84
FL + + + N + +G + D YMNI LE EEY + K R++ G ++G+N
Sbjct: 15 FLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEY-VDGKLRRSYGDAFVRGNN 73
Query: 85 ITLIQNL-NPDE 95
+ + +L + DE
Sbjct: 74 VVVAADLFHADE 85
>gi|170055785|ref|XP_001863736.1| Lsm5 protein [Culex quinquefasciatus]
gi|167875611|gb|EDS38994.1| Lsm5 protein [Culex quinquefasciatus]
Length = 92
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + SR+ I + + I G +LGFD+++N++LE EY + R+ L
Sbjct: 14 PLELVDKCIG--SRIHIIMKNDK--EIVGTLLGFDDFVNMLLEDVTEYENTPEGRRITKL 69
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 70 DQILLNGNNITML 82
>gi|158296145|ref|XP_316632.4| AGAP006604-PA [Anopheles gambiae str. PEST]
gi|157016373|gb|EAA10979.4| AGAP006604-PA [Anopheles gambiae str. PEST]
Length = 94
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + SR+ I + + I G +LGFD+++N++LE EY + R+ L
Sbjct: 14 PLELVDKCIG--SRIHIIMKNDK--EIVGTLLGFDDFVNMLLEDVTEYENTPEGRRITKL 69
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 70 DQILLNGNNITML 82
>gi|71033371|ref|XP_766327.1| U6 small nuclear ribonucleoprotein E [Theileria parva strain
Muguga]
gi|68353284|gb|EAN34044.1| U6 small nuclear ribonucleoprotein E, putative [Theileria parva]
Length = 90
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P+ LI + L ++ IW+ + I G + GFD+YMN+VLE +Y+ K L
Sbjct: 12 PLALIDKCLGSK----IWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYSFSPDGVKTTEL 67
Query: 76 GTIMLKGDNIT-LIQNLNPDEVK 97
++ G+N+ L+ P VK
Sbjct: 68 NDALVNGNNVAMLVPGGKPTNVK 90
>gi|397641777|gb|EJK74845.1| hypothetical protein THAOC_03454 [Thalassiosira oceanica]
Length = 1567
Score = 39.3 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Query: 22 IFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTR--------- 72
+ R++++R R+ + I G L FD+++N+VL AEE+ +R
Sbjct: 1265 LLRYVEHRLRISL----ADGRTIVGTFLAFDKHLNLVLVDAEEFRTLKSSRAAILEERVE 1320
Query: 73 -KALGTIMLKGDNITLIQNLNPDEVKV 98
++LG I+L+G+N+ + P KV
Sbjct: 1321 KRSLGLIILRGENVVSMAVEGPPPPKV 1347
>gi|302771065|ref|XP_002968951.1| hypothetical protein SELMODRAFT_90525 [Selaginella
moellendorffii]
gi|302816639|ref|XP_002989998.1| hypothetical protein SELMODRAFT_130618 [Selaginella
moellendorffii]
gi|300142309|gb|EFJ09011.1| hypothetical protein SELMODRAFT_130618 [Selaginella
moellendorffii]
gi|300163456|gb|EFJ30067.1| hypothetical protein SELMODRAFT_90525 [Selaginella
moellendorffii]
Length = 85
Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P LI R + ++ IW+ + + G + GFD Y+N+VLE EY I ++ L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITPDGKRITKL 65
Query: 76 GTIMLKGDNITLI 88
I+L G+NI ++
Sbjct: 66 DQILLNGNNIAIL 78
>gi|196009502|ref|XP_002114616.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190582678|gb|EDV22750.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 76
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGD 83
+F++ R ++I N N + G + GFD +MNIVL+ E + SK LG ++++G+
Sbjct: 11 KFMEKRLSIKI----NGNRTVVGTLRGFDPFMNIVLDDTVE-QVSSKENNHLGMVVIRGN 65
Query: 84 NITLIQNLN 92
++ +++ L+
Sbjct: 66 SVVMMEVLH 74
>gi|126654168|ref|XP_001388399.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
gi|126117492|gb|EAZ51592.1| small nuclear ribonucleoprotein, putative [Cryptosporidium parvum
Iowa II]
Length = 62
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 41/60 (68%), Gaps = 4/60 (6%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNPDEVKV 98
N N +I G + G+D +MN+VLE+ E + T+K++GT +++G+++ + + + D+VK+
Sbjct: 7 NGNRQIIGSLRGYDNFMNLVLENTTE--VLDSTKKSIGTTVIRGNSVIMWECI--DKVKI 62
>gi|367010514|ref|XP_003679758.1| hypothetical protein TDEL_0B04180 [Torulaspora delbrueckii]
gi|359747416|emb|CCE90547.1| hypothetical protein TDEL_0B04180 [Torulaspora delbrueckii]
Length = 85
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 34 IWLYENVNLRIEGHILGFDEYMNIVLESAEE--YNIKSKTRKAL---GTIMLKGDNITLI 88
+W+ N G ++GFD+++N+++E A E YN K + K L G ++L G+NI ++
Sbjct: 20 VWIVLQSNREFTGTLVGFDDFVNVIIEDAVEWVYNSKFEDEKILEHHGRMLLSGNNIAML 79
>gi|221118892|ref|XP_002154101.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Hydra
magnipapillata]
Length = 93
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 21 LIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--ALGTI 78
L F + +I + + I G LGFD+++N+VLE E+ + R+ L I
Sbjct: 15 LPFELIDKCIGSKIHIIMKTDREIVGTFLGFDDFVNVVLEDVTEFENTPEGRRITKLDQI 74
Query: 79 MLKGDNITLI 88
+L G+NIT++
Sbjct: 75 LLNGNNITML 84
>gi|221060398|ref|XP_002260844.1| ribonucleoprotein [Plasmodium knowlesi strain H]
gi|193810918|emb|CAQ42816.1| ribonucleoprotein, putative [Plasmodium knowlesi strain H]
Length = 201
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 13/69 (18%)
Query: 30 SRVQIWLYENVNLRIE------GHILGFDEYMNIVLESAEEY-------NIKSKTRKALG 76
SR++ WL V + + G L +D +MNIVL AEE+ N + ++ +G
Sbjct: 5 SRLENWLQYRVRVTVSDTRYFVGTFLSYDRHMNIVLVDAEEFRRVKSQENSSKEIKRVIG 64
Query: 77 TIMLKGDNI 85
I+++G+NI
Sbjct: 65 LILIRGENI 73
>gi|109077185|ref|XP_001093268.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5 [Macaca
mulatta]
gi|355747728|gb|EHH52225.1| U6 snRNA-associated Sm-like protein LSm5 [Macaca fascicularis]
gi|355749905|gb|EHH54243.1| hypothetical protein EGM_15034 [Macaca fascicularis]
Length = 91
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 30 SRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--ALGTIMLKGDNITL 87
SR+ I + + I G +LGFD+++N+VL+ E+ I + R+ L I+L G+N T+
Sbjct: 24 SRIHIVMKSDK--EIVGTLLGFDDFVNMVLQDVTEFEITPEGRRITKLDQILLNGNNTTM 81
Query: 88 I 88
+
Sbjct: 82 L 82
>gi|403360308|gb|EJY79824.1| Small nuclear ribonucleoprotein B' [Oxytricha trifallax]
gi|403374056|gb|EJY86961.1| Small nuclear ribonucleoprotein B' [Oxytricha trifallax]
Length = 198
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Query: 46 GHILGFDEYMNIVLESAEEY-NIKSKT--------RKALGTIMLKGDNITLIQNLNP 93
G + FD++MN+VL EEY IK K ++ALG ++L+G+NI + P
Sbjct: 4 GTFIAFDKHMNLVLADTEEYRKIKPKRPEDKERELKRALGLVLLRGENIVTMSAEAP 60
>gi|193713710|ref|XP_001949387.1| PREDICTED: probable small nuclear ribonucleoprotein G-like
[Acyrthosiphon pisum]
Length = 79
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
++ L N N ++ G + GFD +MN+VL+ E IK ++G ++++GD++ I+ L+
Sbjct: 16 KLSLKLNANRQVAGVLRGFDPFMNLVLDETVE-KIKDGVVNSIGMVVIRGDSVLTIEALD 74
>gi|428180050|gb|EKX48919.1| hypothetical protein GUITHDRAFT_93594 [Guillardia theta CCMP2712]
Length = 94
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT---RKA 74
P+ LI R + +R IW+ + G + GFD+Y+N+VLE E+ +
Sbjct: 11 PLELIDRCIGSR----IWIILKGDKEFVGTLQGFDDYVNMVLEDVTEFEVNPDGGYRETK 66
Query: 75 LGTIMLKGDNITLI 88
L I+L G+NI ++
Sbjct: 67 LDQILLNGNNICML 80
>gi|374629344|ref|ZP_09701729.1| Small nuclear ribonucleoprotein, LSM family [Methanoplanus
limicola DSM 2279]
gi|373907457|gb|EHQ35561.1| Small nuclear ribonucleoprotein, LSM family [Methanoplanus
limicola DSM 2279]
Length = 75
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
I G + G+D +MN+VLE+AEE I T KA GT++++GDN+ I
Sbjct: 28 IRGVLQGYDVHMNLVLENAEE-EINGVTTKA-GTLIVRGDNVIYIS 71
>gi|313217530|emb|CBY38609.1| unnamed protein product [Oikopleura dioica]
gi|313236587|emb|CBY19879.1| unnamed protein product [Oikopleura dioica]
Length = 76
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGD 83
+F+ + V++ N ++EG + GFD +MN+V++ A EY K + +G +++G+
Sbjct: 11 KFMDRKMSVKV----NGGRKVEGVLRGFDPFMNLVIDDAIEYR-KDNSSHTMGMCVIRGN 65
Query: 84 NITLIQNL 91
++ +I+ +
Sbjct: 66 SVLMIEAM 73
>gi|145349245|ref|XP_001419048.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579279|gb|ABO97341.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 97
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 26 LQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEE--YNIKSKTRKA-LGTIMLKG 82
L N ++ + N I G + GFD+ N++LE E Y+ +S +A LG M++G
Sbjct: 6 LTNMLDARVSVITNDGRHIVGTLRGFDQVTNVILEDCAERVYSSESGVEEAPLGVYMIRG 65
Query: 83 DNITLI 88
DN+ L+
Sbjct: 66 DNVALV 71
>gi|312136602|ref|YP_004003939.1| small nuclear ribonucleoprotein, lsm family [Methanothermus
fervidus DSM 2088]
gi|311224321|gb|ADP77177.1| Small nuclear ribonucleoprotein, LSM family [Methanothermus
fervidus DSM 2088]
Length = 80
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
QK + +P++ + + L S V I L R G + FD +MN+VL AEE T
Sbjct: 7 QKNIQRPLDTLGKSLN--SPVLIRLKGEREFR--GILKSFDLHMNLVLNDAEEIENGEVT 62
Query: 72 RKALGTIMLKGDNITLIQ 89
RK LGT++++GDNI I
Sbjct: 63 RK-LGTVLIRGDNIVYIS 79
>gi|326428499|gb|EGD74069.1| hypothetical protein PTSG_12357 [Salpingoeca sp. ATCC 50818]
Length = 212
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 14/88 (15%)
Query: 20 NLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY-NIKSKT------- 71
N I +++ R RV E+ + + G + +D++MN+VL EE+ +K+K
Sbjct: 7 NKILKYMNYRMRVTT---EDGRMLV-GTFMAYDKHMNMVLSDCEEFRTVKAKKGTDEQTQ 62
Query: 72 RKALGTIMLKGDNIT--LIQNLNPDEVK 97
++ALG I+L+G+N+ ++ P E K
Sbjct: 63 KRALGFILLRGENVVSMAVEGPPPQEEK 90
>gi|29726409|pdb|1LOJ|A Chain A, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726410|pdb|1LOJ|B Chain B, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726411|pdb|1LOJ|C Chain C, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726412|pdb|1LOJ|D Chain D, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726413|pdb|1LOJ|E Chain E, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726414|pdb|1LOJ|F Chain F, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726415|pdb|1LOJ|G Chain G, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726416|pdb|1LOJ|H Chain H, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726417|pdb|1LOJ|I Chain I, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726418|pdb|1LOJ|J Chain J, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726419|pdb|1LOJ|K Chain K, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726420|pdb|1LOJ|L Chain L, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726421|pdb|1LOJ|M Chain M, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726422|pdb|1LOJ|N Chain N, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
Length = 87
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
G + FD +MN+VL AEE TR+ LGT++++GDNI I
Sbjct: 38 GVLKSFDLHMNLVLNDAEELEDGEVTRR-LGTVLIRGDNIVYIS 80
>gi|448080005|ref|XP_004194518.1| Piso0_005017 [Millerozyma farinosa CBS 7064]
gi|359375940|emb|CCE86522.1| Piso0_005017 [Millerozyma farinosa CBS 7064]
Length = 92
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ +I + + ++ RV L N G ++GFD+Y+N+VLE+ EE++ + + K +
Sbjct: 20 PLEVIDKSIGHKIRV---LLTNTK-EFHGTLVGFDDYVNVVLENVEEFDGDASSGKIVKK 75
Query: 78 IMLKGDNITLI 88
++L G I ++
Sbjct: 76 MLLNGGQIAML 86
>gi|15678676|ref|NP_275791.1| small nuclear ribonucleoprotein [Methanothermobacter
thermautotrophicus str. Delta H]
gi|6094215|sp|O26745.1|RUXX_METTH RecName: Full=Putative snRNP Sm-like protein
gi|2621731|gb|AAB85154.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 81
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
G + FD +MN+VL AEE TR+ LGT++++GDNI I
Sbjct: 38 GVLKSFDLHMNLVLNDAEELEDGEVTRR-LGTVLIRGDNIVYIS 80
>gi|332796496|ref|YP_004457996.1| Sm1 protein [Acidianus hospitalis W1]
gi|332694231|gb|AEE93698.1| archaeal Sm1 protein [Acidianus hospitalis W1]
Length = 76
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 41 NLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
N + G + +D++MN+VL +EE +K +GTI+++GDN+ LI
Sbjct: 24 NKEVRGLLKSYDQHMNLVLSDSEEIQSDGSGKK-IGTIVIRGDNVILI 70
>gi|383848568|ref|XP_003699921.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm11-like
[Megachile rotundata]
Length = 225
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLR--IEGHILGFDEYMNIVLESAEEYNI 67
K+QK P+ +++ ++++R+R++++ +R +E ++ FD++ N+ LE E
Sbjct: 106 KMQKTF-GPLGMLYGYMESRTRIKVYTRNAYGIRGHVEAYVAAFDKHWNLALEDCFEVWT 164
Query: 68 KSKTRKA 74
+ RKA
Sbjct: 165 RKTKRKA 171
>gi|156102224|ref|XP_001616805.1| small nuclear ribonucleoprotein associated protein B' [Plasmodium
vivax Sal-1]
gi|148805679|gb|EDL47078.1| small nuclear ribonucleoprotein associated protein B', putative
[Plasmodium vivax]
Length = 201
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 13/69 (18%)
Query: 30 SRVQIWLYENVNLRIE------GHILGFDEYMNIVLESAEEY-------NIKSKTRKALG 76
SR++ WL V + + G L +D +MNIVL AEE+ N + ++ +G
Sbjct: 5 SRLENWLQYRVRVTVSDTRYFVGTFLSYDRHMNIVLVDAEEFRKVKSQENSSKEIKRVIG 64
Query: 77 TIMLKGDNI 85
I+++G+NI
Sbjct: 65 LILIRGENI 73
>gi|323448261|gb|EGB04162.1| hypothetical protein AURANDRAFT_32975 [Aureococcus
anophagefferens]
Length = 77
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNL 91
N N R+ G + G+D+++N+VLE A E + + +G ++L+G+ I +Q+L
Sbjct: 22 NGNRRVSGVLRGYDQFLNLVLEDATE-DGSDGAKTPIGMVVLRGNGIIQLQSL 73
>gi|448084481|ref|XP_004195616.1| Piso0_005017 [Millerozyma farinosa CBS 7064]
gi|359377038|emb|CCE85421.1| Piso0_005017 [Millerozyma farinosa CBS 7064]
Length = 92
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ +I + + ++ RV L N G ++GFD+Y+N+VLE+ EE++ + + K +
Sbjct: 20 PLEVIDKSIGHKIRV---LLTNTK-EFHGTLVGFDDYVNVVLENVEEFDGDAASGKIVKK 75
Query: 78 IMLKGDNITLI 88
++L G I ++
Sbjct: 76 MLLNGGQIAML 86
>gi|304314789|ref|YP_003849936.1| small nuclear ribonucleoprotein [Methanothermobacter marburgensis
str. Marburg]
gi|302588248|gb|ADL58623.1| small nuclear ribonucleoprotein [Methanothermobacter marburgensis
str. Marburg]
Length = 78
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
G + FD +MN+VL AEE TR+ LGT++++GDNI I
Sbjct: 35 GVLKSFDLHMNLVLNDAEELEDGEVTRR-LGTVLIRGDNIVYIS 77
>gi|29726339|pdb|1JBM|A Chain A, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726340|pdb|1JBM|B Chain B, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726341|pdb|1JBM|C Chain C, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726342|pdb|1JBM|D Chain D, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726343|pdb|1JBM|E Chain E, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726344|pdb|1JBM|F Chain F, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726345|pdb|1JBM|G Chain G, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
Length = 86
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
G + FD +MN+VL AEE TR+ LGT++++GDNI I
Sbjct: 38 GVLKSFDLHMNLVLNDAEELEDGEVTRR-LGTVLIRGDNIVYIS 80
>gi|13786869|pdb|1I81|A Chain A, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786870|pdb|1I81|B Chain B, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786871|pdb|1I81|C Chain C, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786872|pdb|1I81|D Chain D, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786873|pdb|1I81|E Chain E, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786874|pdb|1I81|F Chain F, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786875|pdb|1I81|G Chain G, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|27573929|pdb|1MGQ|A Chain A, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573930|pdb|1MGQ|B Chain B, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573931|pdb|1MGQ|C Chain C, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573932|pdb|1MGQ|D Chain D, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573933|pdb|1MGQ|E Chain E, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573934|pdb|1MGQ|F Chain F, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573935|pdb|1MGQ|G Chain G, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
Length = 83
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
G + FD +MN+VL AEE TR+ LGT++++GDNI I
Sbjct: 40 GVLKSFDLHMNLVLNDAEELEDGEVTRR-LGTVLIRGDNIVYIS 82
>gi|412991139|emb|CCO15984.1| predicted protein [Bathycoccus prasinos]
Length = 97
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 33 QIWL-YENVNLRIEGHILGFDEYMNIVLESAEEYN----IKSKTRKALGTIMLKGDNITL 87
++W+ +N + G + GFD Y+N VLE A EY+ +T K L +I+L G+NI +
Sbjct: 30 KVWIIMKNGHKEFTGTLKGFDVYVNCVLEDAIEYDRDQESGKETTKNLESILLNGNNICM 89
Query: 88 I 88
I
Sbjct: 90 I 90
>gi|339245769|ref|XP_003374518.1| putative small nuclear ribonucleoprotein G [Trichinella spiralis]
gi|316972305|gb|EFV55988.1| putative small nuclear ribonucleoprotein G [Trichinella spiralis]
Length = 76
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNL 91
++ L N + +I G + GFD +MN+V++ A E+ +K+ + +G ++++G+++TL+Q L
Sbjct: 16 KMQLRLNGDRKISGVLRGFDPFMNMVIDEAVEH-LKTGEQIMIGMVVVRGNSVTLMQIL 73
>gi|147806402|emb|CAN67622.1| hypothetical protein VITISV_014712 [Vitis vinifera]
Length = 148
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
++QI L N N + G + GFD++MN+V+++ E N KT +G ++++G+++ ++
Sbjct: 17 KLQIKL--NANRMVVGTLRGFDQFMNLVVDNTVEVNGNEKT--DIGMVVIRGNSVVTVEA 72
Query: 91 LNP 93
L P
Sbjct: 73 LEP 75
>gi|20150503|pdb|1JRI|A Chain A, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150504|pdb|1JRI|B Chain B, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150505|pdb|1JRI|C Chain C, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150506|pdb|1JRI|D Chain D, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150507|pdb|1JRI|E Chain E, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150508|pdb|1JRI|F Chain F, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150509|pdb|1JRI|G Chain G, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150510|pdb|1JRI|H Chain H, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150511|pdb|1JRI|I Chain I, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150512|pdb|1JRI|J Chain J, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150513|pdb|1JRI|K Chain K, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150514|pdb|1JRI|L Chain L, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150515|pdb|1JRI|M Chain M, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150516|pdb|1JRI|N Chain N, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit
Length = 85
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
G + FD +MN+VL AEE TR+ LGT++++GDNI I
Sbjct: 38 GVLKSFDLHMNLVLNDAEELEDGEVTRR-LGTVLIRGDNIVYIS 80
>gi|296234717|ref|XP_002762581.1| PREDICTED: uncharacterized protein LOC100410554 [Callithrix
jacchus]
Length = 655
Score = 38.9 bits (89), Expect = 0.43, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 30 SRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--ALGTIMLKGDNITL 87
SR+ I L + I G +LG +++N+VLE E+ I + R+ L I+L G+NIT+
Sbjct: 589 SRIHIVL--ESDKEIVGALLGLADFVNMVLEDVTEFEISPEGRRITKLDQILLNGNNITM 646
Query: 88 I 88
+
Sbjct: 647 L 647
>gi|440583672|emb|CCH47178.1| similar to small nuclear ribonucleoprotein G-like [Lupinus
angustifolius]
Length = 88
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 35 WLYE---NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNL 91
+LY N N I G + GFD++MN+V+++ E N KT +G ++++G+++ ++ L
Sbjct: 25 YLYTIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKTD--IGMVVIRGNSVVTVEAL 82
Query: 92 NP 93
P
Sbjct: 83 EP 84
>gi|408381788|ref|ZP_11179336.1| small nuclear ribonucleoprotein [Methanobacterium formicicum DSM
3637]
gi|407815719|gb|EKF86289.1| small nuclear ribonucleoprotein [Methanobacterium formicicum DSM
3637]
Length = 80
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 17 QPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALG 76
+P++++ R L S+V I L R G + FD +MN+VL AEE +R+ LG
Sbjct: 11 RPLDVLGRALN--SQVLIKLKGGREFR--GVLESFDMHMNLVLNDAEELESGESSRR-LG 65
Query: 77 TIMLKGDNITLIQ 89
++++GDNI I
Sbjct: 66 VVLIRGDNIVYIS 78
>gi|303271251|ref|XP_003054987.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462961|gb|EEH60239.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 88
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P L+ R + +R IW+ + G + GFD Y+N+VLE EY + + ++ L
Sbjct: 10 PSELVDRCVGSR----IWVIMKGEKEMVGTLRGFDVYVNMVLEDVIEYEMTPEGKRVTKL 65
Query: 76 GTIMLKGDNIT-LIQNLNPDE 95
I+L G+NI L+ PDE
Sbjct: 66 DQILLNGNNIALLVPGGMPDE 86
>gi|67468165|ref|XP_650141.1| small nuclear ribonucleo protein G [Entamoeba histolytica
HM-1:IMSS]
gi|56466712|gb|EAL44755.1| small nuclear ribonucleo protein G, putative [Entamoeba
histolytica HM-1:IMSS]
gi|407041678|gb|EKE40885.1| LSM domain containing protein [Entamoeba nuttalli P19]
gi|449707868|gb|EMD47446.1| small nuclear ribonucleo protein G, putative [Entamoeba
histolytica KU27]
Length = 81
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESA-EEYNIKSKTRK 73
M +P + +L+ R V+I + I G + G+DEYMN+VL+ A + N +
Sbjct: 1 MEKPKPELKHYLEKRILVKI----HGKRSIIGVLSGYDEYMNLVLDEAYDASNPDTDKHI 56
Query: 74 ALGTIMLKGDNITLIQNLNP 93
+G IM++G++I ++ ++P
Sbjct: 57 PIGMIMIRGNSILSVETIDP 76
>gi|67623475|ref|XP_668020.1| small nuclear ribonucleoprotein [Cryptosporidium hominis TU502]
gi|54659204|gb|EAL37793.1| similar to small nuclear ribonucleoprotein [Cryptosporidium
hominis]
Length = 139
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 6/46 (13%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKT------RKALGTIMLKGDNI 85
G+++ FD +MN+VL +EY K +++LG IML+G+NI
Sbjct: 21 GNLMAFDRHMNLVLSDCQEYRRVKKGEEPKELKRSLGLIMLRGENI 66
>gi|397780467|ref|YP_006544940.1| like-Sm ribonucleoprotein, core [Methanoculleus bourgensis MS2]
gi|396938969|emb|CCJ36224.1| like-Sm ribonucleoprotein, core [Methanoculleus bourgensis MS2]
Length = 78
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
+V P+ +F + ++ V+I ++ +++G ++ DE++N+ ++ EY + R
Sbjct: 5 IVLPVKKVFSLVDSKIVVEI---KDDGRKLQGRLVAVDEHLNLHMDETTEYTGDQRGR-T 60
Query: 75 LGTIMLKGDNITLIQNL 91
LGT++++G+NI I L
Sbjct: 61 LGTVVIRGNNILTISPL 77
>gi|389585815|dbj|GAB68545.1| small nuclear ribonucleoprotein associated protein B', partial
[Plasmodium cynomolgi strain B]
Length = 235
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 13/69 (18%)
Query: 30 SRVQIWLYENVNLRIE------GHILGFDEYMNIVLESAEEY-NIKSKT------RKALG 76
SR++ WL V + + G L +D +MN+VL AEE+ +KSK ++ +G
Sbjct: 39 SRLENWLQYRVRVTVSDTRYFVGTFLSYDRHMNVVLVDAEEFRKVKSKENSSKEIKRVIG 98
Query: 77 TIMLKGDNI 85
I+++G+NI
Sbjct: 99 LILIRGENI 107
>gi|282164954|ref|YP_003357339.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
gi|282157268|dbj|BAI62356.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
Length = 72
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
G + G+D +MN+VL++AEE +++K LGTI+++GD + +
Sbjct: 29 GELQGYDMHMNLVLDNAEELKENEESKK-LGTIIVRGDTVVYVS 71
>gi|167517977|ref|XP_001743329.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778428|gb|EDQ92043.1| predicted protein [Monosiga brevicollis MX1]
Length = 83
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKAL 75
+QP+ L+ + + SR+ + + + L G +LGFD+++N+VLE +EY I R+
Sbjct: 5 LQPLELVDKCIG--SRIHVIMKNDKELV--GTLLGFDDFVNMVLEDVKEYVITPNGREVH 60
Query: 76 --GTIMLKGDNITLI 88
I+L G NI ++
Sbjct: 61 RQKKILLNGSNIAIL 75
>gi|288930748|ref|YP_003434808.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
gi|288892996|gb|ADC64533.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
Length = 74
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
G + D+YMN+ L +A EY K R LG I+L+G+NI LIQ
Sbjct: 28 GRLESVDDYMNLHLSNAYEYKDGEKIR-VLGDIVLRGNNIVLIQ 70
>gi|126644035|ref|XP_001388176.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117253|gb|EAZ51353.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
Length = 139
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKT------RKALGTIMLKGDNI-TLIQNLNP 93
G+++ FD +MN+VL +EY K +++LG IML+G+NI T + P
Sbjct: 21 GNLMAFDRHMNLVLSDCQEYRRVKKGEESKELKRSLGLIMLRGENIVTFVAEAPP 75
>gi|70937084|ref|XP_739397.1| ribonucleoprotein [Plasmodium chabaudi chabaudi]
gi|56516366|emb|CAH81154.1| ribonucleoprotein, putative [Plasmodium chabaudi chabaudi]
Length = 141
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 13/68 (19%)
Query: 31 RVQIWLYENVNLRIE------GHILGFDEYMNIVLESAEEY-------NIKSKTRKALGT 77
R++ WL V + I G L +D +MNIVL AEE+ N + ++ +G
Sbjct: 6 RLESWLQYRVRVTISDTRYYVGTFLSYDRHMNIVLVDAEEFRRVKCKENNSKEIKRVVGL 65
Query: 78 IMLKGDNI 85
I+++GDNI
Sbjct: 66 ILIRGDNI 73
>gi|288560538|ref|YP_003424024.1| LSM domain-containing protein [Methanobrevibacter ruminantium M1]
gi|288543248|gb|ADC47132.1| LSM domain-containing protein [Methanobrevibacter ruminantium M1]
Length = 77
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
G + FD +MN+VL+ AEE K + + LGT++++GDNI I
Sbjct: 34 GILKSFDLHMNLVLDDAEELE-KGEVLRRLGTVLIRGDNIVYI 75
>gi|68064661|ref|XP_674314.1| ribonucleoprotein [Plasmodium berghei strain ANKA]
gi|56492799|emb|CAH97912.1| ribonucleoprotein, putative [Plasmodium berghei]
Length = 194
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 13/68 (19%)
Query: 31 RVQIWLYENVNLRIE------GHILGFDEYMNIVLESAEEY-NIKSKT------RKALGT 77
R++ WL V + I G L +D +MNIVL AEE+ +K+K ++ +G
Sbjct: 6 RLESWLQYRVRVTISDTRYYVGTFLSYDRHMNIVLVDAEEFRRVKNKENNFKEIKRVVGL 65
Query: 78 IMLKGDNI 85
I+++GDNI
Sbjct: 66 ILIRGDNI 73
>gi|126178181|ref|YP_001046146.1| like-Sm ribonucleoprotein, core [Methanoculleus marisnigri JR1]
gi|125860975|gb|ABN56164.1| Small nuclear ribonucleoprotein, LSM family [Methanoculleus
marisnigri JR1]
Length = 75
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 17 QPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALG 76
+P++++ + L NR V I L +R G + G+D +MN+VL+ AEE + +K LG
Sbjct: 4 RPLDILDQVL-NRQPVIISLKGGREIR--GILQGYDVHMNLVLDKAEE-EVDGAAQK-LG 58
Query: 77 TIMLKGDNITLI 88
T++++GDN+ I
Sbjct: 59 TLIVRGDNVIYI 70
>gi|440804396|gb|ELR25273.1| u6 snrnaassociated sm-like protein lsm8, putative [Acanthamoeba
castellanii str. Neff]
Length = 94
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 44 IEGHILGFDEYMNIVLESAEE--YNIKSKTRKALGTIMLKGDNITLIQNLN 92
I G + GFD++ N+++E + E Y+ + + LG +++GDNI +I LN
Sbjct: 22 IVGTLRGFDQFANVIVEDSHERVYSAQGMEKVPLGLYVIRGDNIAVIGELN 72
>gi|312385157|gb|EFR29724.1| hypothetical protein AND_23652 [Anopheles darlingi]
Length = 64
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 3/50 (6%)
Query: 44 IEGHILGFDEYMNIVL-ESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
+ G + GFD +MN+VL ES EE K TR +G ++++G++I L++ L+
Sbjct: 15 VSGILRGFDPFMNVVLDESIEEC--KDGTRNNIGMVVIRGNSIILVEALD 62
>gi|196004222|ref|XP_002111978.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190585877|gb|EDV25945.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 247
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 11/64 (17%)
Query: 46 GHILGFDEYMNIVLESAEEY-NIKSKT--------RKALGTIMLKGDNIT--LIQNLNPD 94
G +L +D++MNIVL +E+ IKSK+ +++LG ++L+G+N+ ++ P
Sbjct: 29 GTLLAYDKHMNIVLGDCDEFRKIKSKSSKNQEREEKRSLGLVILRGENLVSLTVEGPPPA 88
Query: 95 EVKV 98
EV +
Sbjct: 89 EVSL 92
>gi|219852145|ref|YP_002466577.1| Sm ribonucleoprotein-like protein [Methanosphaerula palustris
E1-9c]
gi|219546404|gb|ACL16854.1| Like-Sm ribonucleoprotein core [Methanosphaerula palustris E1-9c]
Length = 77
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
+V PI +F + ++ V+I + +EG ++ DEY+NI ++ E N + ++
Sbjct: 5 IVLPIKKVFALVDSKISVEIKDEGRI---LEGRLVAVDEYLNIHMDETIELN--AAQKRN 59
Query: 75 LGTIMLKGDNITLI 88
LGT++++G+NI I
Sbjct: 60 LGTVVIRGNNILTI 73
>gi|449451158|ref|XP_004143329.1| PREDICTED: probable small nuclear ribonucleoprotein G-like
[Cucumis sativus]
gi|449482341|ref|XP_004156252.1| PREDICTED: probable small nuclear ribonucleoprotein G-like
[Cucumis sativus]
Length = 80
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
++QI L N N + G + GFD++MN+V+++ E N KT +G ++++G+++ ++
Sbjct: 17 KLQIKL--NANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKT--DIGMVVIRGNSVVTVEA 72
Query: 91 LNP 93
L P
Sbjct: 73 LEP 75
>gi|195144580|ref|XP_002013274.1| GL24044 [Drosophila persimilis]
gi|198452776|ref|XP_002137534.1| GA26490 [Drosophila pseudoobscura pseudoobscura]
gi|194102217|gb|EDW24260.1| GL24044 [Drosophila persimilis]
gi|198132072|gb|EDY68092.1| GA26490 [Drosophila pseudoobscura pseudoobscura]
Length = 76
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
+ G + GFD +MN+VL+ E K KT+ +G ++++G++I L++ L+
Sbjct: 27 VTGILRGFDPFMNVVLDDTIE-ECKDKTKNNVGMVVIRGNSIVLVEALD 74
>gi|88602493|ref|YP_502671.1| like-Sm ribonucleoprotein, core [Methanospirillum hungatei JF-1]
gi|88187955|gb|ABD40952.1| Small nuclear ribonucleoprotein, LSM family [Methanospirillum
hungatei JF-1]
Length = 79
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
+V PI ++ + + + + + E+ +G ++ DEY+N+ LE + E + K+K R+
Sbjct: 5 IVLPIKKVYSLVD--TLISVEMKEDEGRTFQGRLVAVDEYLNLHLEESIETSGKNKGRE- 61
Query: 75 LGTIMLKGDNI 85
LGT++++G+NI
Sbjct: 62 LGTLVIRGNNI 72
>gi|422293907|gb|EKU21207.1| hypothetical protein NGA_2089810, partial [Nannochloropsis gaditana
CCMP526]
gi|422294090|gb|EKU21390.1| hypothetical protein NGA_2089820, partial [Nannochloropsis gaditana
CCMP526]
Length = 162
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLR--IEGHILGFDEYMNIVLESAEE 64
P L++R Q + V + + LR + G + GFD + N+VLE AEE
Sbjct: 89 PTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAEE 137
>gi|221120336|ref|XP_002162004.1| PREDICTED: probable small nuclear ribonucleoprotein G-like [Hydra
magnipapillata]
Length = 76
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
++ L N N + G + GFD +MN+V++ E N ++ R +G ++++G+++ L++ L+
Sbjct: 16 RLHLKLNCNRSVTGILRGFDPFMNLVIDDTVE-NTSTQERNNIGMVVIRGNSVVLMEALD 74
>gi|428672985|gb|EKX73898.1| U6 small nuclear ribonucleoprotein E, putative [Babesia equi]
Length = 88
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P+ LI + L ++ IW+ + I G + GFD+YMN+VLE EY+ + K L
Sbjct: 12 PLALIDKCLGSK----IWIIMKGDKEIAGILRGFDDYMNMVLEEVTEYSFTPEGIKTTKL 67
Query: 76 GTIMLKGDNIT-LIQNLNPDE 95
++ G+ I L+ P+E
Sbjct: 68 SDALVNGNYIAMLVPGGKPEE 88
>gi|125979619|ref|XP_001353842.1| GA19721 [Drosophila pseudoobscura pseudoobscura]
gi|194752281|ref|XP_001958451.1| GF23512 [Drosophila ananassae]
gi|195171277|ref|XP_002026433.1| GL15546 [Drosophila persimilis]
gi|54640826|gb|EAL29577.1| GA19721 [Drosophila pseudoobscura pseudoobscura]
gi|190625733|gb|EDV41257.1| GF23512 [Drosophila ananassae]
gi|194111339|gb|EDW33382.1| GL15546 [Drosophila persimilis]
Length = 91
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
+ P + P+ L+ + + SR+ I + + + G +LGFD+++N++L+ EY
Sbjct: 4 VPPPANIATLMPLELVDKCIG--SRIHIIMKNDKEMV--GTLLGFDDFVNMLLDDVTEYE 59
Query: 67 IKSKTRK--ALGTIMLKGDNITLI 88
R+ L I+L G+NIT++
Sbjct: 60 NTPDGRRITKLDQILLNGNNITML 83
>gi|224138462|ref|XP_002322820.1| predicted protein [Populus trichocarpa]
gi|222867450|gb|EEF04581.1| predicted protein [Populus trichocarpa]
Length = 80
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
++QI L N N + G + GFD++MN+V+++ + N KT +G ++++G+++ ++
Sbjct: 17 KLQIKL--NANRMVVGTLRGFDQFMNLVVDNTVDVNGDEKT--DIGMVVIRGNSVVTVEA 72
Query: 91 LNP 93
L P
Sbjct: 73 LEP 75
>gi|440302928|gb|ELP95234.1| small nuclear ribonucleoprotein G, putative [Entamoeba invadens
IP1]
Length = 88
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK-ALGTIMLKGDNITLIQNL 91
+I++ + N I G + GFDEY+N+VL+ A + + +K LG I+++G+++ ++ +
Sbjct: 22 RIYVKIHCNRAIIGVLRGFDEYLNLVLDDAFDASHPENPQKIQLGQILIRGNSVLSLETV 81
Query: 92 NP 93
+P
Sbjct: 82 DP 83
>gi|116753552|ref|YP_842670.1| small nuclear ribonucleoprotein [Methanosaeta thermophila PT]
gi|116665003|gb|ABK14030.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
thermophila PT]
Length = 71
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
G + G+D +MN+VLE+ EE I T + +G ++++GDN+ I
Sbjct: 29 GELQGYDIHMNLVLENTEE--IAEGTARKIGAVIVRGDNVVYIS 70
>gi|226291004|gb|EEH46432.1| small nuclear ribonucleoprotein SmG [Paracoccidioides
brasiliensis Pb18]
Length = 79
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 45/71 (63%), Gaps = 7/71 (9%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVL-ESAEEYNIKSKTRKALGTIMLKG 82
++++ R VQI N N ++ G + G+D +MNIVL E+ EE + K R LG ++++G
Sbjct: 10 KYMEKRLFVQI----NGNRKVIGILRGYDVFMNIVLDEAVEEKSGGEKVR--LGMVVIRG 63
Query: 83 DNITLIQNLNP 93
+++ +++ +P
Sbjct: 64 NSVVMLEVCSP 74
>gi|344232902|gb|EGV64775.1| U6 snRNA-associated Sm-like protein LSm7 [Candida tenuis ATCC
10573]
Length = 129
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 15/75 (20%)
Query: 37 YENVNLRIE--------GHILGFDEYMNIVLESAEEY-------NIKSKTRKALGTIMLK 81
Y++ +++E G + GFD+ MN+VLES EE N+ +K ++LG ++++
Sbjct: 43 YKDTQIKVEFIGGRQIVGVLKGFDQLMNLVLESVEETLRDPEDPNVLTKDTRSLGRVVVR 102
Query: 82 GDNITLIQNLNPDEV 96
G ++ I L+ EV
Sbjct: 103 GPSLLTISPLDGSEV 117
>gi|300122521|emb|CBK23091.2| unnamed protein product [Blastocystis hominis]
Length = 74
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 42 LRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNPD 94
L +G ++ FD YMN+ L + EEY + K+ LG ++++ +N+ I+ + PD
Sbjct: 14 LEYQGRLVSFDSYMNLQLSNCEEY-VDGKSTALLGDVLIRCNNVLYIREV-PD 64
>gi|170593551|ref|XP_001901527.1| U6 snRNA-associated Sm-like protein LSm5 [Brugia malayi]
gi|158590471|gb|EDP29086.1| U6 snRNA-associated Sm-like protein LSm5, putative [Brugia
malayi]
Length = 65
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 43 RIEGHILGFDEYMNIVLESAEEY--NIKSKTRKALGTIMLKGDNITLI 88
I G + GFD+Y+N+VLE EY + K L TI+L G++IT++
Sbjct: 9 EIVGTLTGFDDYVNMVLEDVVEYENTVDGKRVTKLDTILLNGNHITML 56
>gi|403216723|emb|CCK71219.1| hypothetical protein KNAG_0G01610 [Kazachstania naganishii CBS
8797]
Length = 86
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 34 IWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI-KSKTRKAL---GTIMLKGDNITLI 88
+W+ N G ++GFD+++N+++E A E+ + K+ K + G ++L G+NI ++
Sbjct: 20 VWIILQSNREFTGTLVGFDDFVNVIIEDAVEWTVTDGKSEKIMEHHGRMLLSGNNIVML 78
>gi|324514246|gb|ADY45805.1| Small nuclear ribonucleoprotein G [Ascaris suum]
Length = 79
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
N N + G + GFD +MNIV+E A E+ +K+ LG ++++G++I +++
Sbjct: 22 NGNRHVSGVLRGFDPFMNIVVEDAVEH-LKNGESNTLGMVVIRGNSIVIME 71
>gi|268323608|emb|CBH37196.1| putative snRNP Sm-like protein [uncultured archaeon]
Length = 102
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKAL 75
++P++++ + L RS V + + R G + G+D +MN+VL AEE + + ++ +
Sbjct: 8 LKPLDVLNKSL--RSPVIVRIRGAREFR--GTLEGYDLHMNLVLSDAEELDGDAIVKELM 63
Query: 76 GTIMLKGDNITLIQ 89
G I+++GDN+ I
Sbjct: 64 GEILVRGDNVVYIS 77
>gi|449018263|dbj|BAM81665.1| similar to Sm protein G [Cyanidioschyzon merolae strain 10D]
Length = 100
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 9/69 (13%)
Query: 32 VQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNIT---LI 88
VQ++L N N + G + GFD Y N+VL A + +T LG + ++G+++ L+
Sbjct: 19 VQVYL--NANRCVRGKLSGFDHYANLVLSDA----LDCRTGAQLGQVWIRGNSVVSVDLL 72
Query: 89 QNLNPDEVK 97
+++N D +
Sbjct: 73 RDVNADRTE 81
>gi|157119614|ref|XP_001659450.1| Sm protein G, putative [Aedes aegypti]
gi|108875262|gb|EAT39487.1| AAEL008719-PA [Aedes aegypti]
Length = 76
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 34/50 (68%), Gaps = 3/50 (6%)
Query: 44 IEGHILGFDEYMNIVL-ESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
+ G + GFD +MN+VL ES EE K TR +G ++++G++I +++ L+
Sbjct: 27 VSGILRGFDPFMNVVLDESIEE--CKDSTRNNIGMVVIRGNSIIMVEALD 74
>gi|156086956|ref|XP_001610885.1| snRNP Sm-like protein [Babesia bovis T2Bo]
gi|154798138|gb|EDO07317.1| snRNP Sm-like protein, putative [Babesia bovis]
Length = 87
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P+ L+ + L + +W+ I G + GFD+YMN+VL+ EY K + L
Sbjct: 12 PLALVDKCLGTK----VWIIMKGEKEITGVLRGFDDYMNVVLDDVTEYTFKPTGVETTEL 67
Query: 76 GTIMLKGDNITLI 88
++ G NI +I
Sbjct: 68 KDALVNGTNIAMI 80
>gi|410720309|ref|ZP_11359665.1| small nuclear ribonucleoprotein [Methanobacterium sp. Maddingley
MBC34]
gi|410601091|gb|EKQ55611.1| small nuclear ribonucleoprotein [Methanobacterium sp. Maddingley
MBC34]
Length = 100
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 17 QPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALG 76
+P++++ R L S+V I L R G + FD +MN+VL AEE +R+ LG
Sbjct: 31 RPLDVLGRALN--SQVLIKLKGGREFR--GVLESFDMHMNLVLNDAEELESGESSRR-LG 85
Query: 77 TIMLKGDNITLIQ 89
++++GDNI I
Sbjct: 86 VVLIRGDNIVYIS 98
>gi|374629736|ref|ZP_09702121.1| Small nuclear ribonucleoprotein, LSM family [Methanoplanus
limicola DSM 2279]
gi|373907849|gb|EHQ35953.1| Small nuclear ribonucleoprotein, LSM family [Methanoplanus
limicola DSM 2279]
Length = 78
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
+V PI ++ ++R V+I ++ +++G + DE++NI ++ A EY I + +
Sbjct: 5 IVLPIKKVYALTESRINVEI---KDDGRKLKGVLAAVDEHLNIHMDQATEY-INDERGRN 60
Query: 75 LGTIMLKGDNITLI 88
LGT++++G NI I
Sbjct: 61 LGTVVIRGSNILTI 74
>gi|195427721|ref|XP_002061925.1| GK17260 [Drosophila willistoni]
gi|194158010|gb|EDW72911.1| GK17260 [Drosophila willistoni]
Length = 91
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
+ P + P+ L+ + + SR+ I + + + G +LGFD+++N++L+ EY
Sbjct: 4 VPPPANISTLMPLELVDKCIG--SRIHIIMKNDKEMV--GTLLGFDDFVNMLLDDVTEYE 59
Query: 67 IKSKTRKA--LGTIMLKGDNITLI 88
R+ L I+L G+NIT++
Sbjct: 60 NTPDGRRVTKLDQILLNGNNITML 83
>gi|164657261|ref|XP_001729757.1| hypothetical protein MGL_3301 [Malassezia globosa CBS 7966]
gi|159103650|gb|EDP42543.1| hypothetical protein MGL_3301 [Malassezia globosa CBS 7966]
Length = 87
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P+ L+ R + + IW+ G +LGFD+Y+N+VLE A EY K L
Sbjct: 9 PLELVDRCIGS----SIWVVMKGQREFVGKLLGFDDYVNMVLEDAVEYEETPDGYKKTHL 64
Query: 76 GTIMLKGDNITLI 88
+L G+NI +
Sbjct: 65 SKTLLNGNNICTL 77
>gi|156544183|ref|XP_001606444.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm11-like [Nasonia
vitripennis]
Length = 225
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLR--IEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
P+ ++F++++NR RV+++ +R +E ++ FD + N+ LE E + RKA
Sbjct: 115 PLGVLFQYMENRIRVKVYTRNANGIRGHVEAYVAAFDRHWNLALEDCLELWTRKVKRKA 173
>gi|410671979|ref|YP_006924350.1| Small nuclear ribonucleoprotein, LSM family [Methanolobus
psychrophilus R15]
gi|409171107|gb|AFV24982.1| Small nuclear ribonucleoprotein, LSM family [Methanolobus
psychrophilus R15]
Length = 72
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
G + G+D +MN+VL+ AEE RK LG+++++GDNI +
Sbjct: 29 GKLQGYDVHMNLVLDEAEELKEGDIVRK-LGSVVIRGDNIVYVS 71
>gi|242050850|ref|XP_002463169.1| hypothetical protein SORBIDRAFT_02g039000 [Sorghum bicolor]
gi|241926546|gb|EER99690.1| hypothetical protein SORBIDRAFT_02g039000 [Sorghum bicolor]
Length = 80
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
++QI L N N + G + GFD++MN+V+++ E N + +G ++++G+++ +I+
Sbjct: 17 KLQIKL--NANRVVIGTLRGFDQFMNLVIDNTVEVN--GNEKNDIGMVVIRGNSVVMIEA 72
Query: 91 LNP 93
L P
Sbjct: 73 LEP 75
>gi|357511115|ref|XP_003625846.1| hypothetical protein MTR_7g104930 [Medicago truncatula]
gi|87240819|gb|ABD32677.1| Like-Sm ribonucleoprotein-related, core [Medicago truncatula]
gi|355500861|gb|AES82064.1| hypothetical protein MTR_7g104930 [Medicago truncatula]
Length = 80
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
Q+ + N N I G + GFD++MN+V+++ E N + +G ++++G+++ ++ L
Sbjct: 17 QLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVN--GNEKNDIGMVVIRGNSVVTVEALE 74
Query: 93 P 93
P
Sbjct: 75 P 75
>gi|428181287|gb|EKX50151.1| small nuclear ribonucleo protein polypeptide G [Guillardia theta
CCMP2712]
Length = 78
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
++ L N N I G + G+D++MN+VL+ +E + R +G ++++G++I++++ ++
Sbjct: 16 RVTLKLNANRNITGILRGYDQFMNLVLDHTQEV-VTPTQRNEIGMVVVRGNSISMVECVD 74
>gi|291226439|ref|XP_002733197.1| PREDICTED: LSM5 homolog, U6 small nuclear RNA associated-like
[Saccoglossus kowalevskii]
Length = 91
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P+ L+ + + SR+ I + + I G +LGFD+++N+VLE E+ + R+ L
Sbjct: 14 PLELVDKCIG--SRIHIVMKSDK--EIVGTLLGFDDFVNMVLEDVVEFENTPEGRRVTKL 69
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 70 EQILLNGNNITML 82
>gi|320164748|gb|EFW41647.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 77
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 15 MVQPINL-IFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK 73
M +P N + +FL R + L N N ++ G + GFD +MN+VL+ E + R
Sbjct: 1 MSKPANPELKKFLDRR----VILKLNGNRKVSGILRGFDPFMNVVLDETFE-EVSESERH 55
Query: 74 ALGTIMLKGDNITLIQNLN 92
+G + ++G++I +++ ++
Sbjct: 56 EIGMVAIRGNSINMVETVD 74
>gi|388514393|gb|AFK45258.1| unknown [Medicago truncatula]
Length = 81
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
Q+ + N N I G + GFD++MN+V+++ E N + +G ++++G+++ ++ L
Sbjct: 17 QLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVN--GNEKNDIGMVVIRGNSVVTVEALE 74
Query: 93 P 93
P
Sbjct: 75 P 75
>gi|328770153|gb|EGF80195.1| hypothetical protein BATDEDRAFT_11709 [Batrachochytrium
dendrobatidis JAM81]
Length = 70
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 41/66 (62%), Gaps = 5/66 (7%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGD 83
R++ + VQ+ N N ++ G + G+D +MNIVLE A E + + LG+I+++G+
Sbjct: 3 RYMDRKLFVQL----NGNRKVTGVLRGYDPFMNIVLEDASE-ELGDGEKNFLGSIVVRGN 57
Query: 84 NITLIQ 89
+I +++
Sbjct: 58 SIGVLE 63
>gi|388493710|gb|AFK34921.1| unknown [Medicago truncatula]
Length = 81
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
Q+ + N N I G + GFD++MN+V+++ E N + +G ++++G+++ ++ L
Sbjct: 17 QLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVN--GNEKNDIGMVVIRGNSVVTVEALE 74
Query: 93 P 93
P
Sbjct: 75 P 75
>gi|20093660|ref|NP_613507.1| small nuclear ribonucleoprotein (snRNP)-like protein
[Methanopyrus kandleri AV19]
gi|19886535|gb|AAM01437.1| Small nuclear ribonucleoprotein (snRNP) homolog [Methanopyrus
kandleri AV19]
Length = 73
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 35/53 (66%), Gaps = 5/53 (9%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNPDEV 96
+ G ++ FD ++N+VL+ E + S+ R LG ++++GD++TLI +P EV
Sbjct: 25 LRGRLVSFDGHLNLVLDDCVEIDEDSEVR--LGRVLIRGDSVTLI---SPAEV 72
>gi|336477290|ref|YP_004616431.1| Sm ribonucleoprotein-like protein [Methanosalsum zhilinae DSM
4017]
gi|335930671|gb|AEH61212.1| Like-Sm ribonucleoprotein core [Methanosalsum zhilinae DSM 4017]
Length = 72
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
G + G+D +MN+VL++AEE RK LG+++++GDN+ +
Sbjct: 29 GELQGYDVHMNLVLDNAEELKDGEIVRK-LGSVVIRGDNVVYLS 71
>gi|384244771|gb|EIE18269.1| small nuclear ribonucleo protein polypeptide G [Coccomyxa
subellipsoidea C-169]
Length = 73
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 9/76 (11%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKAL 75
VQP L +F+ + V + N N ++ G + GFD++MNIVL++A + K + +
Sbjct: 4 VQPPELK-KFMDKKLSVSL----NANRQVTGVLRGFDQFMNIVLDNA----VDEKNKTDI 54
Query: 76 GTIMLKGDNITLIQNL 91
G ++++G++I ++ L
Sbjct: 55 GMVVVRGNSIISLEAL 70
>gi|391346676|ref|XP_003747595.1| PREDICTED: small nuclear ribonucleoprotein G-like [Metaseiulus
occidentalis]
Length = 76
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 7/62 (11%)
Query: 35 WLYENVNLRIEGH------ILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
++ ++++LR+ G + GFD +MNIVLE A E +K R +G +++G++I L+
Sbjct: 12 YMDKSLSLRLNGSRVVSGILRGFDPFMNIVLEEAFE-EVKGGQRTPIGMTVIRGNSIVLL 70
Query: 89 QN 90
+
Sbjct: 71 ET 72
>gi|34394185|dbj|BAC84637.1| putative small nuclear ribonucleoprotein E [Oryza sativa Japonica
Group]
gi|215769180|dbj|BAH01409.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218199999|gb|EEC82426.1| hypothetical protein OsI_26821 [Oryza sativa Indica Group]
gi|222637431|gb|EEE67563.1| hypothetical protein OsJ_25073 [Oryza sativa Japonica Group]
Length = 80
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
++QI L N N + G + GFD++MN+V+++ E N + +G ++++G+++ +I+
Sbjct: 17 KLQIKL--NANRVVIGTLRGFDQFMNLVVDNTVEVN--GNEKNDIGMVVIRGNSVVMIEA 72
Query: 91 LNP 93
L P
Sbjct: 73 LEP 75
>gi|340344218|ref|ZP_08667350.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519359|gb|EGP93082.1| Like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 76
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 28 NRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITL 87
N+ +V + N N + G++ FD +MN+ LE AE+ + KT K LG I+L+GDNI
Sbjct: 12 NKDKVILLRLRN-NKSVRGNLQDFDVHMNLTLEDAEDIS-DGKTVK-LGKILLRGDNILA 68
Query: 88 IQNLNPDE 95
+ PDE
Sbjct: 69 VS--LPDE 74
>gi|328777216|ref|XP_001120196.2| PREDICTED: u7 snRNA-associated Sm-like protein LSm11-like [Apis
mellifera]
Length = 224
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLR--IEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
P+ ++ +++NR+R++++ +R +E ++ FD++ N+ LE E + RKA
Sbjct: 113 PLGMLHEYMENRTRIKVYTRNARGIRGHVEAYVAAFDKHWNLALEDCFEIWTRKVKRKA 171
>gi|255080076|ref|XP_002503618.1| predicted protein [Micromonas sp. RCC299]
gi|226518885|gb|ACO64876.1| predicted protein [Micromonas sp. RCC299]
Length = 88
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P L+ + + +R IW+ + G + GFD Y+N+VLE EY + + R+ L
Sbjct: 10 PSELVDKCVGSR----IWVIMKGEKEMVGTLRGFDVYVNMVLEDVIEYEMTPEGRRETKL 65
Query: 76 GTIMLKGDNITLI 88
I+L G+NI L+
Sbjct: 66 DQILLNGNNIALL 78
>gi|154151155|ref|YP_001404773.1| like-Sm ribonucleoprotein, core [Methanoregula boonei 6A8]
gi|153999707|gb|ABS56130.1| Like-Sm ribonucleoprotein, core [Methanoregula boonei 6A8]
Length = 78
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 47/74 (63%), Gaps = 4/74 (5%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
+V PI +F + ++ V+I ++ +++G ++ DEY+NI ++ E+ + ++ ++
Sbjct: 5 IVLPIKKVFALVDSKIIVEI---KDEGRKLQGRLVAVDEYLNIHMDETIEF-VNNERGRS 60
Query: 75 LGTIMLKGDNITLI 88
LGT++++G+NI I
Sbjct: 61 LGTVVIRGNNILTI 74
>gi|119184466|ref|XP_001243137.1| hypothetical protein CIMG_07033 [Coccidioides immitis RS]
gi|303320391|ref|XP_003070195.1| U6 snRNA-associated Sm-like protein LSm6, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|121931667|sp|Q1DRN0.1|LSM6_COCIM RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|240109881|gb|EER28050.1| U6 snRNA-associated Sm-like protein LSm6, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320041261|gb|EFW23194.1| U6 snRNA-associated Sm-like protein LSm6 [Coccidioides posadasii
str. Silveira]
gi|392866021|gb|EAS31886.2| U6 snRNA-associated Sm-like protein LSm6 [Coccidioides immitis
RS]
Length = 80
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 25 FLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDN 84
FL + + + N + +G + D YMNI LE +E+ + K RK+ G + ++G+N
Sbjct: 15 FLSGITGASVTVKLNSGVVYKGELQSIDGYMNIALEKTQEF-VNGKLRKSYGDVFVRGNN 73
Query: 85 ITLIQ 89
+ I
Sbjct: 74 VLYIS 78
>gi|281200299|gb|EFA74520.1| putative small nuclear ribonucleoparticle-associated protein
[Polysphondylium pallidum PN500]
Length = 250
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 9/64 (14%)
Query: 44 IEGHILGFDEYMNIVLESAEEY-NIKSKT------RKALGTIMLKGDNITLI--QNLNPD 94
I G L FD++MN+V+ AEE+ IK K ++ LG ++++G+ + + ++ P+
Sbjct: 27 IVGRFLAFDKHMNVVICDAEEFRRIKQKGKEDREEKRTLGMVLIRGETVVSLSAESPPPE 86
Query: 95 EVKV 98
EVK
Sbjct: 87 EVKA 90
>gi|386002644|ref|YP_005920943.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
gi|357210700|gb|AET65320.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
Length = 72
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
G + G+D +MN+VL++ EE + + K LGT++++GDN+ I
Sbjct: 29 GELQGYDIHMNLVLDNTEEIR-EGEDSKKLGTVVVRGDNVVYIS 71
>gi|328773803|gb|EGF83840.1| hypothetical protein BATDEDRAFT_8283, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 213
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 9/49 (18%)
Query: 46 GHILGFDEYMNIVLESAEEY-NIKSKT--------RKALGTIMLKGDNI 85
G +L FD++MN+VL EE+ I+ KT +++LG ++L+G+ I
Sbjct: 28 GQMLAFDKHMNLVLSECEEFRKIRPKTKSQQEREEKRSLGLVILRGETI 76
>gi|219119422|ref|XP_002180472.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407945|gb|EEC47880.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 87
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 51/87 (58%), Gaps = 11/87 (12%)
Query: 5 FKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEE 64
++ K+++ + P + Q R+++ L N N ++ G + G+D ++N+VLE
Sbjct: 9 IELTSKLERKLTCP----YSNTQQDKRLRLSL--NANRKVIGTLRGYDAFLNVVLE---- 58
Query: 65 YNIKSKTRKALGTIMLKGDNITLIQNL 91
+++S+T + LG ++++G++I ++ L
Sbjct: 59 -DVESETGQYLGQVVIRGNSIVQLEGL 84
>gi|20090273|ref|NP_616348.1| Sm protein [Methanosarcina acetivorans C2A]
gi|19915270|gb|AAM04828.1| Sm protein [Methanosarcina acetivorans C2A]
Length = 74
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 30 SRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
SR+++ + ++NL +EG + D+YMN+ L E ++ + ++LG+++L+G+NI LI
Sbjct: 13 SRIRVEMKGDLNL-LEGTLKSVDDYMNLHLVDTMEI-VRGEKVRSLGSVVLRGNNIILI 69
>gi|397779277|ref|YP_006543750.1| Sm ribonucleoprotein [Methanoculleus bourgensis MS2]
gi|396937779|emb|CCJ35034.1| Sm ribonucleoprotein [Methanoculleus bourgensis MS2]
Length = 75
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 17 QPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALG 76
+P++++ + L NR V I L +R G + G+D +MN+VL+ AEE + +K LG
Sbjct: 4 RPLDILDQVL-NRQPVIISLKGGREIR--GVLQGYDVHMNLVLDKAEE-EMDGAVQK-LG 58
Query: 77 TIMLKGDNITLI 88
T++++GDN+ I
Sbjct: 59 TLIVRGDNVIYI 70
>gi|67624211|ref|XP_668388.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54659578|gb|EAL38148.1| hypothetical protein Chro.10304 [Cryptosporidium hominis]
Length = 67
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 42 LRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
+R +G ++ FDEYMNI+L EE+ I + + LG + ++ +N+ I
Sbjct: 1 MRYKGTLVSFDEYMNILLNDCEEW-IDNTKKGTLGKVFIRCNNVLYIS 47
>gi|380030070|ref|XP_003698681.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm11-like [Apis
florea]
Length = 224
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLR--IEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
P+ ++ +++NR+R++++ +R +E ++ FD++ N+ LE E + RKA
Sbjct: 113 PLGMLHEYMENRTRIKVYTRNARGIRGHVEAYVAAFDKHWNLALEDCFEIWTRKVKRKA 171
>gi|293345587|ref|XP_002726075.1| PREDICTED: small nuclear ribonucleoprotein G-like [Rattus
norvegicus]
Length = 76
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNL 91
++ L N R++G + GFD +MN+V++ E + S + +GT++++G++I +++ L
Sbjct: 16 KLSLKLNGTRRVQGILRGFDPFMNLVIDECVEM-VTSGQQNIIGTVVIRGNSIIMLETL 73
>gi|433638868|ref|YP_007284628.1| small nuclear ribonucleoprotein [Halovivax ruber XH-70]
gi|433290672|gb|AGB16495.1| small nuclear ribonucleoprotein [Halovivax ruber XH-70]
Length = 99
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 23/101 (22%)
Query: 1 MSGGFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLE 60
++G F+M+ + P++++ L +R RV + G + G+D++MN+VLE
Sbjct: 14 VTGLFRMSGR-------PLDVLEAALGDRVRVHL----KTGTEYVGELAGYDQHMNLVLE 62
Query: 61 SAEEYNIKSKTRKALG--------TIMLKGDNITLIQNLNP 93
AE S+T A G T +++GDN+ ++NP
Sbjct: 63 EAER-TATSETTPANGDEETSSQDTTIIRGDNVV---SINP 99
>gi|195011763|ref|XP_001983306.1| GH15826 [Drosophila grimshawi]
gi|195125111|ref|XP_002007026.1| GI12608 [Drosophila mojavensis]
gi|195374668|ref|XP_002046125.1| GJ12731 [Drosophila virilis]
gi|193896788|gb|EDV95654.1| GH15826 [Drosophila grimshawi]
gi|193918635|gb|EDW17502.1| GI12608 [Drosophila mojavensis]
gi|194153283|gb|EDW68467.1| GJ12731 [Drosophila virilis]
Length = 91
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
+ P + P+ L+ + + SR+ I + + + G +LGFD+++N++L+ EY
Sbjct: 4 VPPPANISTLMPLELVDKCIG--SRIHIIMKNDKEMV--GTLLGFDDFVNMLLDDVTEYE 59
Query: 67 IKSKTRK--ALGTIMLKGDNITLI 88
R+ L I+L G+NIT++
Sbjct: 60 NTPDGRRITKLDQILLNGNNITML 83
>gi|126644023|ref|XP_001388172.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117249|gb|EAZ51349.1| hypothetical protein cgd1_2690 [Cryptosporidium parvum Iowa II]
Length = 67
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 42 LRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
+R +G ++ FDEYMNI+L EE+ I + + LG + ++ +N+ I
Sbjct: 1 MRYKGTLVSFDEYMNILLNDCEEW-IDNTKKGTLGKVFIRCNNVLYI 46
>gi|164426888|ref|XP_001728350.1| hypothetical protein NCU03766 [Neurospora crassa OR74A]
gi|157071516|gb|EDO65259.1| hypothetical protein NCU03766 [Neurospora crassa OR74A]
Length = 65
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 42 LRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
L G ++GFD+Y+N+VLE E++ K L I+L G+NI ++
Sbjct: 8 LEFAGTLVGFDDYVNMVLEDVTEFDYSGNHTK-LKKILLNGNNICML 53
>gi|432329499|ref|YP_007247642.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
gi|432136208|gb|AGB01135.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
Length = 75
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 17 QPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALG 76
+P++++ + L NR V + L +R G + G+D +MN+VL+ AEE +++ + +G
Sbjct: 4 RPLDILDQVL-NRQPVIVSLKGGREIR--GVLQGYDVHMNLVLDKAEE--VENGQVQKVG 58
Query: 77 TIMLKGDNITLI 88
T++++GDN+ I
Sbjct: 59 TLIVRGDNVIYI 70
>gi|66827081|ref|XP_646895.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74859089|sp|Q55EX5.1|LSM5_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm5
gi|60475011|gb|EAL72947.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 97
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P+ LI + + +R IW+ + G +LGFD Y+NI L+ EY + K L
Sbjct: 18 PLELIEKCIGSR----IWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYTPEGLKTVKL 73
Query: 76 GTIMLKGDNITLI 88
I+L G+++ L+
Sbjct: 74 DNILLNGNHVCLL 86
>gi|443719153|gb|ELU09428.1| hypothetical protein CAPTEDRAFT_156804 [Capitella teleta]
Length = 76
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
+ G + GFD +MN+V++ A E K+ + ++G ++++G++ITL++ L+
Sbjct: 27 VTGTLRGFDPFMNLVVDEAIE-QCKTGEQNSIGMVVVRGNSITLLEALD 74
>gi|406861058|gb|EKD14114.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 59
Score = 37.7 bits (86), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
G +LGFD+Y+N+VLE E++ S L I+L G+NI + +
Sbjct: 7 FSGTLLGFDDYVNMVLEDVTEFDY-SGNHTKLSKILLNGNNICMAR 51
>gi|294887859|ref|XP_002772254.1| Small nuclear ribonucleoprotein G, putative [Perkinsus marinus
ATCC 50983]
gi|239876324|gb|EER04070.1| Small nuclear ribonucleoprotein G, putative [Perkinsus marinus
ATCC 50983]
Length = 87
Score = 37.7 bits (86), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 46/69 (66%), Gaps = 5/69 (7%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGD 83
RF++ R V++ N + + G + G+D++MN+VL++A E +++ R+ +G ++++G+
Sbjct: 19 RFMEKRIDVKL----NADRHVVGVVRGYDQFMNLVLDNAVELVSRTEKRE-IGMVVIRGN 73
Query: 84 NITLIQNLN 92
+I + + L+
Sbjct: 74 SILMWECLD 82
>gi|195134290|ref|XP_002011570.1| GI11102 [Drosophila mojavensis]
gi|195399181|ref|XP_002058199.1| GJ15956 [Drosophila virilis]
gi|193906693|gb|EDW05560.1| GI11102 [Drosophila mojavensis]
gi|194150623|gb|EDW66307.1| GJ15956 [Drosophila virilis]
Length = 76
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
+ G + GFD +MN+VL+ E K T+ ++G ++++G++I +++ L+
Sbjct: 27 VTGILRGFDPFMNVVLDDTVE-ECKDNTKNSIGMVVIRGNSIVMVEALD 74
>gi|159474956|ref|XP_001695589.1| Sm-E protein [Chlamydomonas reinhardtii]
gi|158275600|gb|EDP01376.1| Sm-E protein [Chlamydomonas reinhardtii]
Length = 95
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRS-RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY 65
+APK P +L+ L +R ++W+ + I G + GFD Y+N+VLE E
Sbjct: 2 IAPKKGNYAGNPSHLLPSELIDRCIGSKMWVIMKGDKEIVGTLRGFDVYVNMVLEDVTEI 61
Query: 66 NIKSKTRK--ALGTIMLKGDNIT-LIQNLNPD 94
+ +K L I+L G+NI L+ PD
Sbjct: 62 EDTPEGKKLTKLDQILLNGNNIAMLVPGAKPD 93
>gi|257076617|ref|ZP_05570978.1| snRNP Sm-like protein [Ferroplasma acidarmanus fer1]
Length = 71
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 5/58 (8%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
+V + L +N +L G ++G+DEYMN+ L+ AEE + ++ +G ++++G N+ I
Sbjct: 16 KVTLLLKDNRSLV--GTLVGYDEYMNMTLDDAEE---NGEVQRKIGKVIIRGSNVVRI 68
>gi|307105649|gb|EFN53897.1| hypothetical protein CHLNCDRAFT_136065 [Chlorella variabilis]
Length = 239
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 28/106 (26%)
Query: 11 VQKVMVQPINLIFRFLQNRSRVQIWLYENVNLR--IEGHILGFDEYMNIVLESAEE-YNI 67
++V P+ L+ R+ Q RSRV++ +R EG ++ FD++MN+VL EE Y +
Sbjct: 102 AERVQHGPLLLLKRWYQQRSRVRVVTRHARGVRGSSEGLLVAFDKHMNLVLRDVEEQYTV 161
Query: 68 -------------------------KSKTRKALGTIMLKGDNITLI 88
+ R+ L + ++GD++ L+
Sbjct: 162 LLQVQRVKPPAPGSSGLERTRWVRQQEHRRRQLRQVFVRGDSVVLV 207
>gi|294495451|ref|YP_003541944.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
gi|292666450|gb|ADE36299.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
Length = 75
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 30 SRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
SR+Q+ + + +L ++G + D+YMN+ LE E ++ + +++LG+++L+G+NI LI
Sbjct: 13 SRIQVEMKGDHSL-LDGILKSADDYMNLHLEDTFEM-VEGERQRSLGSVVLRGNNIILI 69
>gi|14192871|gb|AAK55776.1|AC079038_10 Putative small nuclear ribonucleoprotein G [Oryza sativa]
Length = 94
Score = 37.7 bits (86), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNP 93
N N + G + GFD++MN+V+++ E N + +G ++++G+++ +I+ L P
Sbjct: 37 NANRVVIGTLRGFDQFMNLVVDNTVEVN--GNEKNDIGMVVIRGNSVVMIEALEP 89
>gi|448377944|ref|ZP_21560567.1| Like-Sm ribonucleoprotein core [Halovivax asiaticus JCM 14624]
gi|445654917|gb|ELZ07766.1| Like-Sm ribonucleoprotein core [Halovivax asiaticus JCM 14624]
Length = 99
Score = 37.7 bits (86), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 23/101 (22%)
Query: 1 MSGGFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLE 60
++G F+M+ + P++++ L +R RV + G + G+D++MN+VLE
Sbjct: 14 VTGLFRMSGR-------PLDVLEAALGDRVRVNL----KTGTEYVGELAGYDQHMNLVLE 62
Query: 61 SAEEYNIKSKTRKALG--------TIMLKGDNITLIQNLNP 93
AE S+T A G T +++GDN+ ++NP
Sbjct: 63 EAER-TATSETAPADGDEETSSQDTTIIRGDNVV---SINP 99
>gi|302501452|ref|XP_003012718.1| small nuclear ribonucleoprotein SmF, putative [Arthroderma
benhamiae CBS 112371]
gi|291176278|gb|EFE32078.1| small nuclear ribonucleoprotein SmF, putative [Arthroderma
benhamiae CBS 112371]
Length = 86
Score = 37.7 bits (86), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 25 FLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDN 84
FL + + + N + +G + D YMNI LE EEY + K R++ G ++G+N
Sbjct: 15 FLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEY-VNGKMRRSYGDAFVRGNN 73
Query: 85 ----ITLIQNLNPD 94
+ L+Q + PD
Sbjct: 74 GMLGLCLVQGI-PD 86
>gi|219851061|ref|YP_002465493.1| Sm ribonucleoprotein-like protein [Methanosphaerula palustris
E1-9c]
gi|219545320|gb|ACL15770.1| Like-Sm ribonucleoprotein core [Methanosphaerula palustris E1-9c]
Length = 75
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 17 QPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALG 76
+P++++ + L N V + L + LR G + G+D +MN+VL+ AEE + + +G
Sbjct: 4 RPLDILDQVL-NGEPVIVSLKGDRELR--GVLQGYDVHMNLVLDKAEE--VTDGATQKIG 58
Query: 77 TIMLKGDNITLIQ 89
T++++GDN+ I
Sbjct: 59 TLIVRGDNVIYIS 71
>gi|399216718|emb|CCF73405.1| unnamed protein product [Babesia microti strain RI]
Length = 92
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 7/59 (11%)
Query: 36 LYENVNLRIE------GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
L +NVN++++ G + FD YMNI L+SAEE+ I + LG I+++ +N+ I
Sbjct: 31 LGKNVNVKLKWGMEYRGQLKSFDTYMNIQLDSAEEW-IDGDFKGVLGLILIRCNNVLYI 88
>gi|154278836|ref|XP_001540231.1| hypothetical protein HCAG_04071 [Ajellomyces capsulatus NAm1]
gi|189028837|sp|A6R363.1|LSM6_AJECN RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|150412174|gb|EDN07561.1| hypothetical protein HCAG_04071 [Ajellomyces capsulatus NAm1]
gi|225554344|gb|EEH02643.1| LSM domain-containing protein [Ajellomyces capsulatus G186AR]
Length = 80
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 25 FLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDN 84
FL + + + N + +G + D YMNI LE EEY + K R++ G ++G+N
Sbjct: 15 FLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEY-VDGKLRRSYGDAFVRGNN 73
Query: 85 ITLIQ 89
+ I
Sbjct: 74 VLYIS 78
>gi|410076164|ref|XP_003955664.1| hypothetical protein KAFR_0B02310 [Kazachstania africana CBS
2517]
gi|372462247|emb|CCF56529.1| hypothetical protein KAFR_0B02310 [Kazachstania africana CBS
2517]
Length = 87
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 34 IWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKAL-----GTIMLKGDNITLI 88
+W+ N G ++GFD+++N++++ A+EY + L G ++L G NI ++
Sbjct: 20 VWIILQSNREFTGTLVGFDDFVNVIIDDAKEYIVNDNGENELVMEHHGRLLLSGGNINML 79
>gi|193582435|ref|XP_001943900.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm11-like
[Acyrthosiphon pisum]
Length = 217
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLR--IEGHILGFDEYMNIVLESAEEYNIKSKTRKAL 75
P++ I F + RV++++ V++R EG+I+ FD++ N+V++ +E + K+L
Sbjct: 108 PLSRIALFCYAKKRVKVYIRSAVSVRGHCEGYIIAFDKHWNLVMDDVDEVWTRKNKYKSL 167
Query: 76 G 76
Sbjct: 168 A 168
>gi|302419059|ref|XP_003007360.1| LSM domain-containing protein [Verticillium albo-atrum VaMs.102]
gi|261353011|gb|EEY15439.1| LSM domain-containing protein [Verticillium albo-atrum VaMs.102]
Length = 89
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 45 EGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
+G ++ D YMNI L AEEY I K ALG ++++ +N+ I+
Sbjct: 32 KGRLVSIDSYMNIQLSGAEEY-IDQKMTGALGQVLIRCNNVLWIR 75
>gi|294910891|ref|XP_002777961.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Perkinsus marinus ATCC 50983]
gi|239886025|gb|EER09756.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Perkinsus marinus ATCC 50983]
Length = 167
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 14/82 (17%)
Query: 30 SRVQIWLYENVNLRIE------GHILGFDEYMNIVLESAEEY-------NIKSKTRKALG 76
+++Q WL V + + G + FD++MN+VL EE+ + + ++ LG
Sbjct: 8 TKMQQWLNYRVRVTLHDERIMIGQFMAFDKHMNLVLADTEEFRKVALITTTEREVKRMLG 67
Query: 77 TIMLKGDN-ITLIQNLNPDEVK 97
++L+G+N I++ P VK
Sbjct: 68 LLILRGENIISMTAEAPPPNVK 89
>gi|258568810|ref|XP_002585149.1| hypothetical protein UREG_05838 [Uncinocarpus reesii 1704]
gi|237906595|gb|EEP80996.1| hypothetical protein UREG_05838 [Uncinocarpus reesii 1704]
Length = 144
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
+V +++ ++ D YMNI LE +EY I K R + G + ++G+N TL +
Sbjct: 23 SVTVKLNSGVVYKDGYMNIALEKTQEY-IDGKLRNSYGDVFVRGNNATLYND 73
>gi|156097813|ref|XP_001614939.1| small nuclear ribonucleoprotein G [Plasmodium vivax Sal-1]
gi|148803813|gb|EDL45212.1| small nuclear ribonucleoprotein G, putative [Plasmodium vivax]
gi|389582433|dbj|GAB65171.1| small nuclear ribonucleoprotein G [Plasmodium cynomolgi strain B]
Length = 83
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 49/80 (61%), Gaps = 6/80 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P + +F++ R +V Y N N +I G + G+D +MN+VL++ E IK + + +G
Sbjct: 10 PASDFRKFMEKRLQV----YLNGNRQIVGVLRGYDTFMNLVLDNTVE--IKKEEQIDIGI 63
Query: 78 IMLKGDNITLIQNLNPDEVK 97
++++G++I+ + L+ ++K
Sbjct: 64 VVIRGNSISYWECLDRVDIK 83
>gi|50425663|ref|XP_461428.1| DEHA2F25036p [Debaryomyces hansenii CBS767]
gi|49657097|emb|CAG89843.1| DEHA2F25036p [Debaryomyces hansenii CBS767]
Length = 93
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
++Q+ + + + G ++GFD+Y+N+VLE+ EE++ + K + ++L G + ++
Sbjct: 34 KIQVLMTNDKEFK--GTLIGFDDYVNMVLENVEEFDNEGPKGKVIKKMLLNGSQVAML 89
>gi|330801323|ref|XP_003288678.1| hypothetical protein DICPUDRAFT_152939 [Dictyostelium purpureum]
gi|325081300|gb|EGC34821.1| hypothetical protein DICPUDRAFT_152939 [Dictyostelium purpureum]
Length = 92
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA- 74
+ P+ LI + + +R IW+ + G +LGFD Y+NI L+ EY + K
Sbjct: 12 ILPLELIEKCIGSR----IWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYTPEGLKTI 67
Query: 75 -LGTIMLKGDNITLI 88
L I+L G+++ L+
Sbjct: 68 KLDNILLNGNHVCLL 82
>gi|317145212|ref|XP_003189687.1| U6 snRNA-associated Sm-like protein LSm6 [Aspergillus oryzae
RIB40]
Length = 80
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
N + +G + D YMNI LE +EEY + K R++ G ++G+N+ I
Sbjct: 29 NSGVVYKGELQSVDGYMNIALEKSEEY-VNGKLRRSYGDAFVRGNNVLYIS 78
>gi|388579060|gb|EIM19389.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 179
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY----------NIKSKTRKALGTIML 80
R+++ L N ++ G +L FD +MN+VL E+ +I + ++ALG I+L
Sbjct: 18 RLRVTL--NDTRQLVGQMLAFDRHMNLVLVDTIEFRRLKGPSSQGDIPKEMKRALGLIVL 75
Query: 81 KGDNITLIQNLNPDEVK 97
+G+ I I P VK
Sbjct: 76 RGETIISISVEGPPPVK 92
>gi|110760718|ref|XP_001120607.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like [Apis
mellifera]
gi|340715932|ref|XP_003396461.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like [Bombus
terrestris]
gi|350396810|ref|XP_003484674.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Bombus
impatiens]
gi|380019757|ref|XP_003693769.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Apis
florea]
gi|383866113|ref|XP_003708516.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Megachile rotundata]
Length = 91
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P+ L+ + + SR+ I + + I G +LGFD+++N++LE E + R+ L
Sbjct: 14 PLELVDKCIG--SRIHIIMKNDK--EIVGTLLGFDDFVNMLLEDVTESEATPEGRRVTKL 69
Query: 76 GTIMLKGDNITLI 88
I+L G NIT++
Sbjct: 70 DQILLNGSNITML 82
>gi|330835854|ref|YP_004410582.1| like-Sm ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
gi|329567993|gb|AEB96098.1| like-Sm ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
Length = 75
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 41 NLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
N + G++ +D++MN+VL + E + K +GTI+++GDN+ LI
Sbjct: 24 NKEVRGYLKSYDQHMNLVLSDSVEIQ-NNNDEKKMGTIVIRGDNVILI 70
>gi|326427331|gb|EGD72901.1| small nuclear ribonucleoprotein G [Salpingoeca sp. ATCC 50818]
Length = 76
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGD 83
RFL + +++ N N ++ G + GFD +MNIV++ E+ + K +G ++++G+
Sbjct: 11 RFLDKKLELKL----NANRKVSGILRGFDPFMNIVMDQTVEHKPDGEQVK-IGVVVIRGN 65
Query: 84 NITLIQNL 91
+I ++ L
Sbjct: 66 SIATMKGL 73
>gi|308505206|ref|XP_003114786.1| CRE-SNR-7 protein [Caenorhabditis remanei]
gi|308258968|gb|EFP02921.1| CRE-SNR-7 protein [Caenorhabditis remanei]
Length = 77
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
N N ++ G + GFD +MN+V++ A EY KS T LG +++G+++ +++
Sbjct: 22 NGNRQVSGILRGFDPFMNMVIDEAVEYP-KSGTPINLGMTVIRGNSVVIME 71
>gi|119188491|ref|XP_001244852.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|320031840|gb|EFW13798.1| small nuclear ribonucleoprotein SmG [Coccidioides posadasii str.
Silveira]
gi|392867766|gb|EAS33463.2| small nuclear ribonucleoprotein SmG [Coccidioides immitis RS]
Length = 78
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 43/69 (62%), Gaps = 7/69 (10%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESA-EEYNIKSKTRKALGTIMLKG 82
++++ R +QI N N R+ G + G+D +MNIVL+ A EE K R LG ++++G
Sbjct: 10 KYMEKRLLIQI----NGNRRVIGVLRGYDVFMNIVLDEAIEEKTGGEKVR--LGMVVIRG 63
Query: 83 DNITLIQNL 91
+++ +++ L
Sbjct: 64 NSVVMLEAL 72
>gi|388579402|gb|EIM19726.1| LSM-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 87
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 15/78 (19%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI-------KSK 70
P+ LI + + +R IW+ G + GFD+++N+VL+ EY+I KSK
Sbjct: 7 PLELIDKCIGSR----IWVIMKNEREFVGTLQGFDDFVNMVLDDVTEYDISPDGTQKKSK 62
Query: 71 TRKALGTIMLKGDNITLI 88
R+ L L G+N+ ++
Sbjct: 63 LRQTL----LNGNNVCML 76
>gi|340505820|gb|EGR32114.1| small nuclear ribonucleoprotein, putative [Ichthyophthirius
multifiliis]
Length = 85
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 26 LQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNI 85
LQ + ++ +Y N R++G + G D YMNIVLE+A+E K K +G +++G++I
Sbjct: 18 LQKYNGKRLLVYLNGKRRVQGVVKGHDNYMNIVLENAQELIGKDKVNN-IGKAVVRGNSI 76
>gi|261198058|ref|XP_002625431.1| predicted protein [Ajellomyces dermatitidis SLH14081]
gi|239595394|gb|EEQ77975.1| predicted protein [Ajellomyces dermatitidis SLH14081]
gi|239607755|gb|EEQ84742.1| predicted protein [Ajellomyces dermatitidis ER-3]
gi|327354601|gb|EGE83458.1| small nuclear ribonucleoprotein SmG [Ajellomyces dermatitidis
ATCC 18188]
Length = 78
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 44/69 (63%), Gaps = 7/69 (10%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVL-ESAEEYNIKSKTRKALGTIMLKG 82
++++ R VQ+ N N ++ G + G+D +MNIVL E+ EE N K R LG ++++G
Sbjct: 10 KYMEKRLFVQL----NGNRKVIGILRGYDVFMNIVLDEAVEEKNGGEKVR--LGMVVIRG 63
Query: 83 DNITLIQNL 91
+++ +++ L
Sbjct: 64 NSVVMLEAL 72
>gi|399218089|emb|CCF74976.1| unnamed protein product [Babesia microti strain RI]
Length = 87
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI--KSKTRKAL 75
P+ L+ + + NR +W+ + ++G + GFD+YMN+ + +EY + T + +
Sbjct: 12 PLALVDKCIGNR----MWIIMKNDKELDGILCGFDDYMNMASKDVKEYTYSPQGHTVENI 67
Query: 76 GTIMLKGDNITLI 88
+L G+NI ++
Sbjct: 68 DKCLLNGNNIVML 80
>gi|296805353|ref|XP_002843501.1| LSM domain-containing protein [Arthroderma otae CBS 113480]
gi|238844803|gb|EEQ34465.1| LSM domain-containing protein [Arthroderma otae CBS 113480]
Length = 80
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 25 FLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDN 84
FL + + + N + +G + D YMNI LE EEY + K R++ G ++G+N
Sbjct: 15 FLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEY-VNGKMRRSYGDAFVRGNN 73
Query: 85 ITLIQ 89
+ I
Sbjct: 74 VLYIS 78
>gi|315045632|ref|XP_003172191.1| LSM domain-containing protein [Arthroderma gypseum CBS 118893]
gi|327304531|ref|XP_003236957.1| U6 snRNA-associated Sm-like protein LSm6 [Trichophyton rubrum CBS
118892]
gi|311342577|gb|EFR01780.1| LSM domain-containing protein [Arthroderma gypseum CBS 118893]
gi|326459955|gb|EGD85408.1| U6 snRNA-associated Sm-like protein LSm6 [Trichophyton rubrum CBS
118892]
gi|326472909|gb|EGD96918.1| U6 snRNA-associated Sm-like protein LSm6 [Trichophyton tonsurans
CBS 112818]
Length = 80
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 25 FLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDN 84
FL + + + N + +G + D YMNI LE EEY + K R++ G ++G+N
Sbjct: 15 FLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEY-VNGKMRRSYGDAFVRGNN 73
Query: 85 ITLIQ 89
+ I
Sbjct: 74 VLYIS 78
>gi|367001532|ref|XP_003685501.1| hypothetical protein TPHA_0D04330 [Tetrapisispora phaffii CBS
4417]
gi|357523799|emb|CCE63067.1| hypothetical protein TPHA_0D04330 [Tetrapisispora phaffii CBS
4417]
Length = 86
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 34 IWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTR-----KALGTIMLKGDNITLI 88
+W+ N G ++GFD+++N+++E A EY ++ K G ++L G+NI ++
Sbjct: 21 VWIILQSNREFTGTLIGFDDFVNVIIEDAVEYITRNNDDDDIVMKHHGRMLLSGNNIAML 80
>gi|384492952|gb|EIE83443.1| hypothetical protein RO3G_08148 [Rhizopus delemar RA 99-880]
Length = 174
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 22/86 (25%)
Query: 19 INLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY-NIKSKT------ 71
+N R + SRV + G +L FD++MN+VL EE+ +KSK
Sbjct: 13 VNYRLRVTMSDSRV-----------LTGQMLAFDKHMNLVLADCEEFRKVKSKAKSNNTT 61
Query: 72 ----RKALGTIMLKGDNITLIQNLNP 93
++ LG I+L+G+ I I P
Sbjct: 62 EQEMKRTLGLIILRGETIISISVDGP 87
>gi|282848218|gb|ADB02890.1| putative small nuclear ribonucleoprotein polypeptide G/SNRNP-G
[Jatropha curcas]
Length = 80
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
++QI L N N + G + GFD++MN+V+++ E N K +G ++++G+++ ++
Sbjct: 17 KLQIKL--NANRMVVGTLRGFDQFMNLVVDNTVEVNGDEKN--DIGMVVIRGNSVVTVEA 72
Query: 91 LNP 93
L P
Sbjct: 73 LEP 75
>gi|195042091|ref|XP_001991363.1| GH12097 [Drosophila grimshawi]
gi|193901121|gb|EDV99987.1| GH12097 [Drosophila grimshawi]
Length = 76
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
+ G + GFD +MN+VL+ E K T+ ++G ++++G++I +++ L+
Sbjct: 27 VTGILRGFDPFMNVVLDDTIE-ECKDNTKNSIGMVVIRGNSIVMVEALD 74
>gi|21358059|ref|NP_648022.1| CG6610, isoform A [Drosophila melanogaster]
gi|442630491|ref|NP_001261461.1| CG6610, isoform B [Drosophila melanogaster]
gi|442630493|ref|NP_001261462.1| CG6610, isoform C [Drosophila melanogaster]
gi|194867419|ref|XP_001972067.1| GG15317 [Drosophila erecta]
gi|195337817|ref|XP_002035522.1| GM14749 [Drosophila sechellia]
gi|195492179|ref|XP_002093879.1| GE21536 [Drosophila yakuba]
gi|195588132|ref|XP_002083812.1| GD13931 [Drosophila simulans]
gi|7295386|gb|AAF50703.1| CG6610, isoform A [Drosophila melanogaster]
gi|21064593|gb|AAM29526.1| RE60135p [Drosophila melanogaster]
gi|190653850|gb|EDV51093.1| GG15317 [Drosophila erecta]
gi|194128615|gb|EDW50658.1| GM14749 [Drosophila sechellia]
gi|194179980|gb|EDW93591.1| GE21536 [Drosophila yakuba]
gi|194195821|gb|EDX09397.1| GD13931 [Drosophila simulans]
gi|220950876|gb|ACL87981.1| CG6610-PA [synthetic construct]
gi|220959480|gb|ACL92283.1| CG6610-PA [synthetic construct]
gi|440215357|gb|AGB94156.1| CG6610, isoform B [Drosophila melanogaster]
gi|440215358|gb|AGB94157.1| CG6610, isoform C [Drosophila melanogaster]
Length = 91
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
+ P + P+ L+ + + SR+ I + + + G +LGFD+++N++L+ EY
Sbjct: 4 VPPPSNISTLMPLELVDKCIG--SRIHIIMKNDKEMV--GTLLGFDDFVNMLLDDVTEYE 59
Query: 67 IKSKTRK--ALGTIMLKGDNITLI 88
R+ L I+L G+NIT++
Sbjct: 60 NTPDGRRITKLDQILLNGNNITML 83
>gi|389644698|ref|XP_003719981.1| small nuclear ribonucleoprotein F [Magnaporthe oryzae 70-15]
gi|351639750|gb|EHA47614.1| small nuclear ribonucleoprotein F [Magnaporthe oryzae 70-15]
gi|440470659|gb|ELQ39721.1| small nuclear ribonucleoprotein F [Magnaporthe oryzae Y34]
gi|440487924|gb|ELQ67688.1| small nuclear ribonucleoprotein F [Magnaporthe oryzae P131]
Length = 88
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 45 EGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNPDE 95
+G ++ D YMNI L +A+EY I K LG I+++ +N+ +++ DE
Sbjct: 32 KGRLVSIDSYMNIQLSNAQEY-IDQKLEGDLGQILIRCNNVLWVRSAATDE 81
>gi|380488855|emb|CCF37095.1| small nuclear ribonucleoprotein F [Colletotrichum higginsianum]
Length = 88
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 45 EGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNPDE 95
+G ++ D YMNI L AEEY I K ALG ++++ +N+ I+ E
Sbjct: 32 KGKLVSIDSYMNIQLSGAEEY-IDQKLTGALGQVLIRCNNVLWIRGAKQGE 81
>gi|326477395|gb|EGE01405.1| U6 snRNA-associated Sm-like protein LSm6 [Trichophyton equinum
CBS 127.97]
Length = 80
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 25 FLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDN 84
FL + + + N + +G + D YMNI LE EEY + K R++ G ++G+N
Sbjct: 15 FLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEY-VNGKMRRSYGDAFVRGNN 73
Query: 85 ITLIQ 89
+ I
Sbjct: 74 VLYIS 78
>gi|294885997|ref|XP_002771506.1| U6 small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
gi|239875210|gb|EER03322.1| U6 small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
Length = 97
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI---KSKTRKA 74
P+ L+ + + +R IW+ + + G + GFD+Y+N+VL+ EY I K
Sbjct: 20 PLALVDKCVGSR----IWVIMRGDRELVGTLRGFDDYVNMVLDDVTEYTILPDGGKRVDK 75
Query: 75 LGTIMLKGDNITLI 88
+ +I+L G ++ ++
Sbjct: 76 IESILLNGSSVAML 89
>gi|119482644|ref|XP_001261350.1| small nuclear ribonucleoprotein (LSM5), putative [Neosartorya
fischeri NRRL 181]
gi|119409505|gb|EAW19453.1| small nuclear ribonucleoprotein (LSM5), putative [Neosartorya
fischeri NRRL 181]
Length = 61
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 43 RIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
G +LGFD+Y+N+VLE E++ S + L I+L G+NI ++
Sbjct: 6 EFSGTLLGFDDYVNMVLEDVTEFDY-SGAQVKLPKILLNGNNICML 50
>gi|429862333|gb|ELA36985.1| small nuclear ribonucleoprotein [Colletotrichum gloeosporioides
Nara gc5]
Length = 89
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 45 EGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNPDE 95
+G ++ D YMNI L AEEY I K ALG ++++ +N+ I+ E
Sbjct: 32 KGKLVSIDSYMNIQLSGAEEY-IDQKMTGALGQVLIRCNNVLWIRGAKQGE 81
>gi|407464208|ref|YP_006775090.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
gi|407047396|gb|AFS82148.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
Length = 76
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 26 LQNRSRVQIWLYENVNLR-IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDN 84
L S+ ++ L N R ++G + FD +MN+ LE AE ++ + + LG I+L+GDN
Sbjct: 8 LMTNSKGKVVLLRLRNTRTVQGTLRDFDIHMNLTLEDAE--DVTEEKHEKLGKILLRGDN 65
Query: 85 I 85
I
Sbjct: 66 I 66
>gi|384247810|gb|EIE21296.1| hypothetical protein COCSUDRAFT_83520 [Coccomyxa subellipsoidea
C-169]
Length = 270
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 12/65 (18%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN----IKSKT------RKALGTIML 80
R+++ L ++ + I G + FD +MN+VL AEE+ K +T R+ LG ++L
Sbjct: 16 RMRVTLIDSRH--IVGRFMAFDRHMNLVLGDAEEFRKLPPKKGRTEEERDQRRVLGLVLL 73
Query: 81 KGDNI 85
+GD +
Sbjct: 74 RGDEV 78
>gi|328772543|gb|EGF82581.1| hypothetical protein BATDEDRAFT_9366, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 69
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--LGTIMLKGDNITLI 88
++W+ + G +LGFD+++N+VLE EY + S + ++L G+NI ++
Sbjct: 11 KLWVIMKGDKEFTGTLLGFDDFVNMVLEDVTEYEMTSTGIRTEHFDQLLLNGNNICMV 68
>gi|221053452|ref|XP_002258100.1| small nuclear ribonucleoprotein [Plasmodium knowlesi strain H]
gi|193807933|emb|CAQ38637.1| small nuclear ribonucleoprotein, putative [Plasmodium knowlesi
strain H]
Length = 83
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 49/80 (61%), Gaps = 6/80 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P + +F++ R +V Y N N +I G + G+D +MN+VL++ E IK + + +G
Sbjct: 10 PSSDFRKFMEKRLQV----YLNGNRQIVGVLRGYDTFMNLVLDNTVE--IKKEQQIDIGI 63
Query: 78 IMLKGDNITLIQNLNPDEVK 97
++++G++I+ + L+ ++K
Sbjct: 64 VVIRGNSISYWECLDRVDIK 83
>gi|392592920|gb|EIW82246.1| small nuclear ribo protein F, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 77
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKAL 75
V P+N FLQ+ + +++ L +G ++ D YMN+ L + EE+ K+ AL
Sbjct: 1 VNPVNPK-PFLQDLTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQ-DGKSNGAL 58
Query: 76 GTIMLKGDNITLIQNLNPD 94
G + ++ +N+ I+ P+
Sbjct: 59 GEVFIRCNNVLYIREAPPE 77
>gi|327401554|ref|YP_004342393.1| Sm ribonucleoprotein-like protein [Archaeoglobus veneficus SNP6]
gi|327317062|gb|AEA47678.1| Like-Sm ribonucleoprotein core [Archaeoglobus veneficus SNP6]
Length = 74
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
G + D+YMNI + +A EY K R LG ++L+G+N+ LIQ
Sbjct: 28 GRLESVDDYMNIYMSNAVEYKNGEKLRN-LGNLVLRGNNVILIQ 70
>gi|356505386|ref|XP_003521472.1| PREDICTED: probable small nuclear ribonucleoprotein G [Glycine
max]
gi|356572580|ref|XP_003554446.1| PREDICTED: probable small nuclear ribonucleoprotein G-like
[Glycine max]
gi|255625815|gb|ACU13252.1| unknown [Glycine max]
Length = 79
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
++QI L N N + G + GFD++MN+V+++ E N K +G ++++G+++ ++
Sbjct: 17 KLQIKL--NANRMVVGTLRGFDQFMNLVVDNTVEVNGNEKN--DIGMVVIRGNSVVTVEA 72
Query: 91 LNP 93
L P
Sbjct: 73 LEP 75
>gi|340370971|ref|XP_003384019.1| PREDICTED: probable small nuclear ribonucleoprotein G-like
[Amphimedon queenslandica]
Length = 78
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
R+Q+ L N N I G + GFD YMN+VL+ E S + +G ++++G+++ LI+
Sbjct: 17 RLQLRL--NGNRTITGILRGFDPYMNVVLDDCVEER-SSHQKFNIGMVVVRGNSVVLIEA 73
Query: 91 L 91
L
Sbjct: 74 L 74
>gi|134080970|emb|CAK41484.1| unnamed protein product [Aspergillus niger]
Length = 59
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 43 RIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
G +LGFD+Y+N+VLE E++ S ++ L I+L G+N+ ++
Sbjct: 4 EFAGTLLGFDDYVNMVLEDVTEFDY-SGSQVKLPKILLNGNNVCML 48
>gi|452824595|gb|EME31597.1| small nuclear ribonucleoprotein B and B' [Galdieria sulphuraria]
Length = 214
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 13/76 (17%)
Query: 33 QIWLYENVNLRIE--------GHILGFDEYMNIVLESAEEYNIKSKT----RKALGTIML 80
++ Y N LR+ G +L FD+++N+VL EE+ K ++ALG ++L
Sbjct: 8 KLLQYINYRLRVSLDDQRVIVGQLLAFDKHLNLVLNDCEEFRKLKKQDKEEKRALGLVLL 67
Query: 81 KGDN-ITLIQNLNPDE 95
+G++ IT+ P E
Sbjct: 68 RGESVITMTVESPPPE 83
>gi|407461851|ref|YP_006773168.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045473|gb|AFS80226.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
Length = 75
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 41 NLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNPDE 95
N I+G + FD +MN+ LE+AE+ + + LG ++L+GDNI I PDE
Sbjct: 24 NKTIQGVLQDFDIHMNLTLENAED--VSEEKPDPLGKVLLRGDNILAIS--LPDE 74
>gi|384483289|gb|EIE75469.1| hypothetical protein RO3G_00173 [Rhizopus delemar RA 99-880]
Length = 202
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 22/91 (24%)
Query: 19 INLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY-NIKSKT------ 71
+N R + SRV + G +L FD++MN+VL EE+ +KSK
Sbjct: 13 VNYRLRVTMSDSRV-----------LTGQMLAFDKHMNLVLADCEEFRKVKSKAKSNNPT 61
Query: 72 ----RKALGTIMLKGDNITLIQNLNPDEVKV 98
++ LG ++L+G+ I I P +
Sbjct: 62 EQEMKRTLGLVILRGETIISISIDGPPPPSI 92
>gi|299747331|ref|XP_001836960.2| small nuclear riboprotein F [Coprinopsis cinerea okayama7#130]
gi|298407471|gb|EAU84577.2| small nuclear riboprotein F [Coprinopsis cinerea okayama7#130]
Length = 81
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKAL 75
V P+N FLQ + +++ L +G ++ D YMN+ L + EE+ K+ AL
Sbjct: 3 VNPVNPK-PFLQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQ-DGKSNGAL 60
Query: 76 GTIMLKGDNITLIQNLNPDE 95
G + ++ +N+ I+ P++
Sbjct: 61 GEVFIRCNNVLYIREAPPED 80
>gi|156843124|ref|XP_001644631.1| hypothetical protein Kpol_526p26 [Vanderwaltozyma polyspora DSM
70294]
gi|156115278|gb|EDO16773.1| hypothetical protein Kpol_526p26 [Vanderwaltozyma polyspora DSM
70294]
Length = 86
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 34 IWLYENVNLRIEGHILGFDEYMNIVLESAEEY-----NIKSKTRKALGTIMLKGDNITLI 88
+W+ N G ++GFD+++N+++E A EY N + G ++L G+NI ++
Sbjct: 21 VWIILQSNREFTGKLVGFDDFVNVIIEDAVEYITDNHNQCDTELRHHGRMLLSGNNIAML 80
>gi|124484977|ref|YP_001029593.1| hypothetical protein Mlab_0149 [Methanocorpusculum labreanum Z]
gi|124362518|gb|ABN06326.1| Like-Sm ribonucleoprotein, core [Methanocorpusculum labreanum Z]
Length = 75
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 17 QPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALG 76
+P+ ++ + L NR V I L +R G + G+D +MN+VL+ AEE +LG
Sbjct: 4 RPLEILDQVL-NRQPVIISLKGGREIR--GVLQGYDVHMNLVLDKAEEEGENGTV--SLG 58
Query: 77 TIMLKGDNITLIQ 89
T++++GDN+ I
Sbjct: 59 TLIVRGDNVIYIS 71
>gi|346976539|gb|EGY19991.1| LSM domain-containing protein [Verticillium dahliae VdLs.17]
Length = 79
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 45 EGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
+G ++ D YMNI L AEEY I K ALG ++++ +N+ I+
Sbjct: 22 KGRLVSIDSYMNIQLSGAEEY-IDQKMTGALGQVLIRCNNVLWIR 65
>gi|170291130|ref|YP_001737946.1| like-Sm ribonucleoprotein core [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175210|gb|ACB08263.1| Like-Sm ribonucleoprotein core [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 78
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Query: 43 RIEGHILGFDEYMNIVLESAEEYNIKS-KTRKALGTIMLKGDNITLI 88
+I G ++ +DE MN+VL+SA E + S + ++++GT+ ++G+N+ +
Sbjct: 29 QIVGKLIVYDEMMNLVLDSAREVDPASGEVKRSVGTLFIRGNNVLFV 75
>gi|145517276|ref|XP_001444521.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145518840|ref|XP_001445292.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124411943|emb|CAK77124.1| unnamed protein product [Paramecium tetraurelia]
gi|124412736|emb|CAK77895.1| unnamed protein product [Paramecium tetraurelia]
Length = 81
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 25 FLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDN 84
FL+ +R QI + + G + D+YMN+ + + EEY + K+R LG ++++ +N
Sbjct: 12 FLEEITRKQIIVRLKWGWELRGVLKSSDQYMNLHMLNTEEY-VDGKSRGILGEVLVRCNN 70
Query: 85 ITLIQNLNPDE 95
+ I+ PDE
Sbjct: 71 VLYIRQC-PDE 80
>gi|156405713|ref|XP_001640876.1| predicted protein [Nematostella vectensis]
gi|156228012|gb|EDO48813.1| predicted protein [Nematostella vectensis]
Length = 77
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
++ L N + G + G+D +MN+VL+ A E N+ + A+G ++++G++I ++ L+
Sbjct: 16 KLSLKLNGGRHVSGVLRGYDPFMNLVLDDAVE-NVSGNEKHAIGMVVIRGNSIVTMEALD 74
>gi|6320994|ref|NP_011073.1| Lsm5p [Saccharomyces cerevisiae S288c]
gi|731523|sp|P40089.1|LSM5_YEAST RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|603386|gb|AAB64673.1| Yer146wp [Saccharomyces cerevisiae]
gi|45269457|gb|AAS56109.1| YER146W [Saccharomyces cerevisiae]
gi|151944864|gb|EDN63123.1| snRNP protein [Saccharomyces cerevisiae YJM789]
gi|190405705|gb|EDV08972.1| snRNP protein [Saccharomyces cerevisiae RM11-1a]
gi|256272052|gb|EEU07064.1| Lsm5p [Saccharomyces cerevisiae JAY291]
gi|259146073|emb|CAY79333.1| Lsm5p [Saccharomyces cerevisiae EC1118]
gi|285811779|tpg|DAA07807.1| TPA: Lsm5p [Saccharomyces cerevisiae S288c]
gi|349577808|dbj|GAA22976.1| K7_Lsm5p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392299849|gb|EIW10941.1| Lsm5p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 93
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 7/55 (12%)
Query: 41 NLRIEGHILGFDEYMNIVLESAEEYNI----KSKTRKAL---GTIMLKGDNITLI 88
N EG ++GFD+++N++LE A E+ I +S+ K + G ++L G+NI ++
Sbjct: 27 NREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRMLLSGNNIAIL 81
>gi|14600779|ref|NP_147300.1| small nucleolar RNP protein Sm [Aeropyrum pernix K1]
gi|10720267|sp|Q9YEQ5.1|RUXX_AERPE RecName: Full=Putative snRNP Sm-like protein
gi|5104175|dbj|BAA79491.1| small nucleolar RNP protein Sm [Aeropyrum pernix K1]
Length = 77
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 15 MVQPINL-IFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK 73
M PI L R + + + + LRI+G + +D+++NI+L AEE S R
Sbjct: 1 MSGPITLPTLRMMLDYVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEEIGETSIRR- 59
Query: 74 ALGTIMLKGDNITLI 88
LG +++GD++ +I
Sbjct: 60 -LGLTLVRGDSVVVI 73
>gi|402861349|ref|XP_003895059.1| PREDICTED: small nuclear ribonucleoprotein G-like [Papio anubis]
Length = 76
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNL 91
++ L N R++G + GFD +MN+V++ E I S + +G ++++G+NI +++ L
Sbjct: 16 KLSLKLNGGRRVQGILQGFDPFMNLVIDECVEMAI-SGQQNNIGMVVIRGNNIIMLEAL 73
>gi|50290221|ref|XP_447542.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526852|emb|CAG60479.1| unnamed protein product [Candida glabrata]
Length = 90
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKAL---------GTIMLKGD 83
Q+ + N G ++GFDE++N++LE EY + L G ++L G+
Sbjct: 19 QVHIILQSNREFSGKLVGFDEFVNVILEDPIEYTTEITANDGLKSEVVMEHHGRMLLSGN 78
Query: 84 NITLI 88
NIT++
Sbjct: 79 NITML 83
>gi|284162105|ref|YP_003400728.1| Sm ribonucleoprotein-like protein [Archaeoglobus profundus DSM
5631]
gi|284012102|gb|ADB58055.1| Like-Sm ribonucleoprotein core [Archaeoglobus profundus DSM 5631]
Length = 74
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 50 GFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
G+D +MNIVLE+AEE RK LG+++++GD + +
Sbjct: 33 GYDIHMNIVLENAEEIQNGEVVRK-LGSVVIRGDTVVFVS 71
>gi|310800295|gb|EFQ35188.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 89
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 45 EGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNPDE 95
+G ++ D YMN+ L AEEY I K ALG ++++ +N+ I+ E
Sbjct: 32 KGKLVSIDSYMNVQLSGAEEY-IDQKMTGALGQVLIRCNNVLWIRGAKQGE 81
>gi|412991296|emb|CCO16141.1| U6 snRNA-associated Sm-like protein LSm8 [Bathycoccus prasinos]
Length = 96
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 34 IWLYENVNLRIEGHILGFDEYMNIVLESAEE--YNIKSKTRKA-LGTIMLKGDNITLIQN 90
I + N I GH+ GFD+ N+++E+ E Y++++ A LG +++GDN+ L+ +
Sbjct: 13 ISIITNDGRHIVGHLRGFDQQTNLIVENCHERVYSMENGVEMAPLGLYVVRGDNVALVGD 72
Query: 91 LN 92
++
Sbjct: 73 VD 74
>gi|212543325|ref|XP_002151817.1| U6 snRNA-associated Sm-like protein LSm6, putative [Talaromyces
marneffei ATCC 18224]
gi|210066724|gb|EEA20817.1| U6 snRNA-associated Sm-like protein LSm6, putative [Talaromyces
marneffei ATCC 18224]
Length = 80
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 25 FLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDN 84
FL + + + N + +G + D YMNI LE EEY + + R++ G ++G+N
Sbjct: 15 FLSEITGAPVTVKLNSGVVYQGELQSVDGYMNIALEKTEEY-VNGQLRRSYGDAFVRGNN 73
Query: 85 ITLIQ 89
+ I
Sbjct: 74 VLYIS 78
>gi|443924956|gb|ELU43898.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 183
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 13/74 (17%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY-NIKSKT----------RKALGTIM 79
R++I L N + G +L FD++MN+VL EE+ +KSK ++ LG I+
Sbjct: 19 RLKITL--NDGRALTGQMLAFDKHMNLVLADCEEFRRVKSKKSDQGGVEQELKRTLGLII 76
Query: 80 LKGDNITLIQNLNP 93
L+G+ + I P
Sbjct: 77 LRGETVVSISVEGP 90
>gi|303390224|ref|XP_003073343.1| U6 snRNA-associated Sm-like protein [Encephalitozoon intestinalis
ATCC 50506]
gi|303302489|gb|ADM11983.1| U6 snRNA-associated Sm-like protein [Encephalitozoon intestinalis
ATCC 50506]
Length = 88
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 44 IEGHILGFDEYMNIVLESAEEY----NIKSKTRKALGTIMLKGDNITLIQNLNPDE 95
+EG +L DE +N+VL+ +EE+ K R+ LG +M +GD + I+ L+ E
Sbjct: 23 MEGTMLSVDEDVNVVLDDSEEFRNARGSKEPRRRVLGLVMARGDFVMDIEILSKPE 78
>gi|148642242|ref|YP_001272755.1| small nuclear ribonucleoprotein [Methanobrevibacter smithii ATCC
35061]
gi|222444586|ref|ZP_03607101.1| hypothetical protein METSMIALI_00198 [Methanobrevibacter smithii
DSM 2375]
gi|261350875|ref|ZP_05976292.1| like-Sm ribonucleoprotein, core [Methanobrevibacter smithii DSM
2374]
gi|148551259|gb|ABQ86387.1| snRNP Sm-like protein [Methanobrevibacter smithii ATCC 35061]
gi|222434151|gb|EEE41316.1| LSM domain protein [Methanobrevibacter smithii DSM 2375]
gi|288860212|gb|EFC92510.1| like-Sm ribonucleoprotein, core [Methanobrevibacter smithii DSM
2374]
Length = 76
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
G + FD +MN+VL AEE TR+ LG ++++GDNI I
Sbjct: 33 GILKSFDLHMNLVLNDAEELQDGEVTRR-LGVVLIRGDNIVYIS 75
>gi|295665420|ref|XP_002793261.1| small nuclear ribonucleoprotein SmG [Paracoccidioides sp.
'lutzii' Pb01]
gi|226278175|gb|EEH33741.1| small nuclear ribonucleoprotein SmG [Paracoccidioides sp.
'lutzii' Pb01]
Length = 78
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 44/69 (63%), Gaps = 7/69 (10%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVL-ESAEEYNIKSKTRKALGTIMLKG 82
++++ R VQI N N ++ G + G+D +MNIVL E+ EE + K R LG ++++G
Sbjct: 10 KYMEKRLFVQI----NGNRKVIGILRGYDVFMNIVLDEAVEEKSGGEKVR--LGMVVIRG 63
Query: 83 DNITLIQNL 91
+++ +++ L
Sbjct: 64 NSVVMLEAL 72
>gi|333986739|ref|YP_004519346.1| snRNP Sm-like protein [Methanobacterium sp. SWAN-1]
gi|333824883|gb|AEG17545.1| snRNP Sm-like protein [Methanobacterium sp. SWAN-1]
Length = 80
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 17 QPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALG 76
+P++++ + L S+V I L R G + FD +MN+VL AEE +R+ LG
Sbjct: 11 RPLDVLGKSLN--SQVLIKLKGGREFR--GVLNSFDMHMNLVLNDAEELESGESSRR-LG 65
Query: 77 TIMLKGDNITLIQ 89
++++GDNI I
Sbjct: 66 VVLIRGDNIVYIS 78
>gi|325959826|ref|YP_004291292.1| snRNP Sm-like protein [Methanobacterium sp. AL-21]
gi|325331258|gb|ADZ10320.1| snRNP Sm-like protein [Methanobacterium sp. AL-21]
Length = 80
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 17 QPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALG 76
+P++++ + L S+V I L R G + FD +MN+VL AEE + +T K LG
Sbjct: 11 RPLDVLGKSLN--SQVLIELKGGREFR--GLLKSFDMHMNLVLNEAEELD-GLETAKRLG 65
Query: 77 TIMLKGDNITLIQ 89
++++GDNI I
Sbjct: 66 IVLIRGDNIVYIS 78
>gi|294901095|ref|XP_002777232.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239884763|gb|EER09048.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
Length = 171
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 18/86 (20%)
Query: 30 SRVQIWLYENVNLRIE------GHILGFDEYMNIVLESAEEY-NIKSK----------TR 72
+++Q WL V + + G + FD++MN+VL EE+ ++SK +
Sbjct: 8 TKMQQWLNYRVRVTLHDGRIMIGQFMAFDKHMNLVLADTEEFRKVRSKGESGLGEEREVK 67
Query: 73 KALGTIMLKGDN-ITLIQNLNPDEVK 97
+ LG ++L+G+N I++ P VK
Sbjct: 68 RMLGLLILRGENIISMTAEAPPPNVK 93
>gi|58382854|ref|XP_312222.2| AGAP002706-PA [Anopheles gambiae str. PEST]
gi|170033098|ref|XP_001844416.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|55242066|gb|EAA07689.2| AGAP002706-PA [Anopheles gambiae str. PEST]
gi|167873530|gb|EDS36913.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 76
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 34/50 (68%), Gaps = 3/50 (6%)
Query: 44 IEGHILGFDEYMNIVL-ESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
+ G + GFD +MN+V+ ES EE K TR +G ++++G++I +++ L+
Sbjct: 27 VSGILRGFDPFMNVVVDESIEE--CKDGTRNNIGMVVIRGNSIIMVEALD 74
>gi|225679289|gb|EEH17573.1| conserved hypothetical protein [Paracoccidioides brasiliensis
Pb03]
Length = 78
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 44/69 (63%), Gaps = 7/69 (10%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVL-ESAEEYNIKSKTRKALGTIMLKG 82
++++ R VQI N N ++ G + G+D +MNIVL E+ EE + K R LG ++++G
Sbjct: 10 KYMEKRLFVQI----NGNRKVIGILRGYDVFMNIVLDEAVEEKSGGEKVR--LGMVVIRG 63
Query: 83 DNITLIQNL 91
+++ +++ L
Sbjct: 64 NSVVMLEAL 72
>gi|323309313|gb|EGA62531.1| Lsm5p [Saccharomyces cerevisiae FostersO]
Length = 116
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 7/55 (12%)
Query: 41 NLRIEGHILGFDEYMNIVLESAEEYNI----KSKTRKAL---GTIMLKGDNITLI 88
N EG ++GFD+++N++LE A E+ I +S+ K + G ++L G+NI ++
Sbjct: 27 NREFEGTLVGFDDFVNVILEDAVEWLIDPEXESRNEKVMQHHGRMLLSGNNIAIL 81
>gi|294872496|ref|XP_002766300.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239867057|gb|EEQ99017.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
Length = 172
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 18/86 (20%)
Query: 30 SRVQIWLYENVNLRIE------GHILGFDEYMNIVLESAEEY-NIKSK----------TR 72
+++Q WL V + + G + FD++MN+VL EE+ ++SK +
Sbjct: 8 TKMQQWLNYRVRVTLHDGRIMIGQFMAFDKHMNLVLADTEEFRKVRSKGESGLGEEREVK 67
Query: 73 KALGTIMLKGDN-ITLIQNLNPDEVK 97
+ LG ++L+G+N I++ P VK
Sbjct: 68 RMLGLLILRGENIISMTAEAPPPNVK 93
>gi|295672880|ref|XP_002796986.1| LSM domain-containing protein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226282358|gb|EEH37924.1| LSM domain-containing protein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 84
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 25 FLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDN 84
FL + + + N + +G + D YMNI LE EEY + K R++ G ++G+N
Sbjct: 14 FLTEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEY-VDGKLRRSYGDAFVRGNN 72
Query: 85 IT 86
T
Sbjct: 73 ET 74
>gi|145489729|ref|XP_001430866.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124397967|emb|CAK63468.1| unnamed protein product [Paramecium tetraurelia]
Length = 77
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKAL 75
+ P+ L+ + + +R +W+ + EG + GFD++ N+VLE+ E + K + L
Sbjct: 4 ILPLGLLDKAISSR----VWILMKDDREFEGTLRGFDDFFNMVLENVIELDGGKKNK--L 57
Query: 76 GTIMLKGDNITLI 88
+I+L G I LI
Sbjct: 58 ESILLNGTQICLI 70
>gi|294885961|ref|XP_002771488.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239875192|gb|EER03304.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
Length = 171
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 18/86 (20%)
Query: 30 SRVQIWLYENVNLRIE------GHILGFDEYMNIVLESAEEY-NIKSK----------TR 72
+++Q WL V + + G + FD++MN+VL EE+ ++SK +
Sbjct: 8 TKMQQWLNYRVRVTLHDGRIMIGQFMAFDKHMNLVLADTEEFRKVRSKGESGLGEEREVK 67
Query: 73 KALGTIMLKGDN-ITLIQNLNPDEVK 97
+ LG ++L+G+N I++ P VK
Sbjct: 68 RMLGLLILRGENIISMTAEAPPPNVK 93
>gi|159479232|ref|XP_001697697.1| small nuclear riboprotein F [Chlamydomonas reinhardtii]
gi|158274065|gb|EDO99849.1| small nuclear riboprotein F [Chlamydomonas reinhardtii]
Length = 85
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 25 FLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDN 84
FLQ+ + Q+ + + +G+++ D YMN+ L S EEY I + LG ++++ +N
Sbjct: 12 FLQDLTGKQVIVKLKWGMEYKGYLVSTDSYMNLQLASTEEY-IDGQFTGQLGEVLIRCNN 70
Query: 85 ITLIQNLNPDE 95
+ ++ + P+E
Sbjct: 71 VMYLRGV-PEE 80
>gi|392580035|gb|EIW73162.1| hypothetical protein TREMEDRAFT_24108, partial [Tremella
mesenterica DSM 1558]
Length = 79
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
+ G + GFD+ MN+V++ E ++LG ++L+G NITLI
Sbjct: 29 VTGTLKGFDQLMNLVMDDVVEEFENGMPSRSLGLVVLRGPNITLI 73
>gi|163845331|ref|YP_001622986.1| hypothetical protein BSUIS_B1229 [Brucella suis ATCC 23445]
gi|163676054|gb|ABY40164.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
Length = 605
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
RFL+N SR +WL V R+E F+E+ + VLE E
Sbjct: 177 RFLENVSRATVWLDRGVTRRLEQGFAHFEEWRDKVLEEEE 216
>gi|306844742|ref|ZP_07477327.1| ABC transporter, ATP-binding protein [Brucella inopinata BO1]
gi|306274914|gb|EFM56684.1| ABC transporter, ATP-binding protein [Brucella inopinata BO1]
Length = 605
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
RFL+N SR +WL V R+E F+E+ + VLE E
Sbjct: 177 RFLENVSRATVWLDRGVTRRLEQGFAHFEEWRDKVLEEEE 216
>gi|294850999|ref|ZP_06791675.1| molybdate-transporting ATPase [Brucella sp. NVSL 07-0026]
gi|294821642|gb|EFG38638.1| molybdate-transporting ATPase [Brucella sp. NVSL 07-0026]
Length = 605
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
RFL+N SR +WL V R+E F+E+ + VLE E
Sbjct: 177 RFLENVSRATVWLDRGVTRRLEQGFAHFEEWRDKVLEEEE 216
>gi|265984766|ref|ZP_06097501.1| ABC transporter [Brucella sp. 83/13]
gi|306839445|ref|ZP_07472253.1| ABC transporter, ATP-binding protein [Brucella sp. NF 2653]
gi|264663358|gb|EEZ33619.1| ABC transporter [Brucella sp. 83/13]
gi|306405390|gb|EFM61661.1| ABC transporter, ATP-binding protein [Brucella sp. NF 2653]
Length = 605
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
RFL+N SR +WL V R+E F+E+ + VLE E
Sbjct: 177 RFLENVSRATVWLDRGVTRRLEQGFAHFEEWRDKVLEEEE 216
>gi|261750905|ref|ZP_05994614.1| ABC transporter [Brucella suis bv. 5 str. 513]
gi|261740658|gb|EEY28584.1| ABC transporter [Brucella suis bv. 5 str. 513]
Length = 605
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
RFL+N SR +WL V R+E F+E+ + VLE E
Sbjct: 177 RFLENVSRATVWLDRGVTRRLEQGFAHFEEWRDKVLEEEE 216
>gi|156098737|ref|XP_001615384.1| U6 snRNA-associated Sm-like protein LSm6 [Plasmodium vivax Sal-1]
gi|148804258|gb|EDL45657.1| U6 snRNA-associated Sm-like protein LSm6, putative [Plasmodium
vivax]
Length = 86
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 42 LRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
+ +G++ FD YMNI L +AEE+ I + + LG I L+ +NI I+
Sbjct: 30 MEYKGNLKSFDAYMNIRLANAEEW-IHGEYKGTLGEIFLRCNNILYIR 76
>gi|342326346|gb|AEL23088.1| small nuclear ribonucleoprotein polypeptide G [Cherax
quadricarinatus]
Length = 77
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
+EG + GFD +MN+V++ E K+ R +G ++++G +I +++ L+
Sbjct: 27 VEGTLRGFDPFMNLVVDDGVEAR-KTGDRVRIGVVVIRGSSIIMLEALD 74
>gi|302837345|ref|XP_002950232.1| hypothetical protein VOLCADRAFT_109070 [Volvox carteri f.
nagariensis]
gi|300264705|gb|EFJ48900.1| hypothetical protein VOLCADRAFT_109070 [Volvox carteri f.
nagariensis]
Length = 95
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRS-RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY 65
+APK P +L+ L +R ++W+ + I G + GFD Y+N+VLE E
Sbjct: 2 IAPKKGNYEGNPSHLLPSELIDRCIGSRMWVIMKGDKEIVGTLRGFDVYVNMVLEDVTEI 61
Query: 66 NIKSKTRK--ALGTIMLKGDNIT-LIQNLNPD 94
+ +K L I+L G+NI L+ PD
Sbjct: 62 EDSPEGKKLTKLDQILLNGNNIAILVPGGKPD 93
>gi|301107352|ref|XP_002902758.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262097876|gb|EEY55928.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 62
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKA--LGTIMLKGDNITLI 88
G + GFD+Y+N+VL+ EY I + ++ L ++L G+N+ L+
Sbjct: 9 GTLRGFDDYVNMVLDDVTEYEITPEGKREVKLDQVLLNGNNVCLL 53
>gi|23502610|ref|NP_698737.1| ABC transporter ATP-binding protein [Brucella suis 1330]
gi|148559041|ref|YP_001259601.1| ABC transporter ATP-binding protein [Brucella ovis ATCC 25840]
gi|376281405|ref|YP_005155411.1| ABC transporter ATP-binding protein [Brucella suis VBI22]
gi|384225397|ref|YP_005616561.1| ABC transporter ATP-binding protein [Brucella suis 1330]
gi|23348614|gb|AAN30652.1| ABC transporter, ATP-binding protein [Brucella suis 1330]
gi|148370298|gb|ABQ60277.1| ABC transporter, ATP-binding protein [Brucella ovis ATCC 25840]
gi|343383577|gb|AEM19069.1| ABC transporter, ATP-binding protein [Brucella suis 1330]
gi|358259004|gb|AEU06739.1| ABC transporter, ATP-binding protein [Brucella suis VBI22]
Length = 605
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
RFL+N SR +WL V R+E F+E+ + VLE E
Sbjct: 177 RFLENVSRATVWLDRGVTRRLEQGFAHFEEWRDKVLEEEE 216
>gi|256370160|ref|YP_003107671.1| ABC transporter ATP-binding protein [Brucella microti CCM 4915]
gi|256000323|gb|ACU48722.1| ABC transporter, ATP-binding protein [Brucella microti CCM 4915]
Length = 605
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
RFL+N SR +WL V R+E F+E+ + VLE E
Sbjct: 177 RFLENVSRATVWLDRGVTRRLEQGFAHFEEWRDKVLEEEE 216
>gi|261219337|ref|ZP_05933618.1| ABC transporter [Brucella ceti M13/05/1]
gi|261222873|ref|ZP_05937154.1| ABC transporter [Brucella ceti B1/94]
gi|261316254|ref|ZP_05955451.1| ABC transporter [Brucella pinnipedialis B2/94]
gi|261322398|ref|ZP_05961595.1| ABC transporter [Brucella ceti M644/93/1]
gi|261757402|ref|ZP_06001111.1| ABC transporter [Brucella sp. F5/99]
gi|265987318|ref|ZP_06099875.1| ABC transporter [Brucella pinnipedialis M292/94/1]
gi|265998832|ref|ZP_06111389.1| ABC transporter [Brucella ceti M490/95/1]
gi|340791351|ref|YP_004756816.1| ABC transporter ATP-binding protein [Brucella pinnipedialis B2/94]
gi|260921457|gb|EEX88110.1| ABC transporter [Brucella ceti B1/94]
gi|260924426|gb|EEX90994.1| ABC transporter [Brucella ceti M13/05/1]
gi|261295088|gb|EEX98584.1| ABC transporter [Brucella ceti M644/93/1]
gi|261295477|gb|EEX98973.1| ABC transporter [Brucella pinnipedialis B2/94]
gi|261737386|gb|EEY25382.1| ABC transporter [Brucella sp. F5/99]
gi|262553521|gb|EEZ09290.1| ABC transporter [Brucella ceti M490/95/1]
gi|264659515|gb|EEZ29776.1| ABC transporter [Brucella pinnipedialis M292/94/1]
gi|340559810|gb|AEK55048.1| ABC transporter, ATP-binding protein [Brucella pinnipedialis B2/94]
Length = 605
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
RFL+N SR +WL V R+E F+E+ + VLE E
Sbjct: 177 RFLENVSRATVWLDRGVTRRLEQGFAHFEEWRDKVLEEEE 216
>gi|261315884|ref|ZP_05955081.1| ABC transporter [Brucella pinnipedialis M163/99/10]
gi|261304910|gb|EEY08407.1| ABC transporter [Brucella pinnipedialis M163/99/10]
Length = 605
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
RFL+N SR +WL V R+E F+E+ + VLE E
Sbjct: 177 RFLENVSRATVWLDRGVTRRLEQGFAHFEEWRDKVLEEEE 216
>gi|161619679|ref|YP_001593566.1| ABC transporter [Brucella canis ATCC 23365]
gi|260568832|ref|ZP_05839300.1| ABC transporter [Brucella suis bv. 4 str. 40]
gi|376275645|ref|YP_005116084.1| ABC transporter [Brucella canis HSK A52141]
gi|161336490|gb|ABX62795.1| ABC transporter related [Brucella canis ATCC 23365]
gi|260154216|gb|EEW89298.1| ABC transporter [Brucella suis bv. 4 str. 40]
gi|363404212|gb|AEW14507.1| ABC transporter [Brucella canis HSK A52141]
Length = 605
Score = 36.6 bits (83), Expect = 2.2, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
RFL+N SR +WL V R+E F+E+ + VLE E
Sbjct: 177 RFLENVSRATVWLDRGVTRRLEQGFAHFEEWRDKVLEEEE 216
>gi|261325789|ref|ZP_05964986.1| ABC transporter [Brucella neotomae 5K33]
gi|261301769|gb|EEY05266.1| ABC transporter [Brucella neotomae 5K33]
Length = 605
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
RFL+N SR +WL V R+E F+E+ + VLE E
Sbjct: 177 RFLENVSRATVWLDRGVTRRLEQGFAHFEEWRDKVLEEEE 216
>gi|261214719|ref|ZP_05929000.1| ABC transporter [Brucella abortus bv. 3 str. Tulya]
gi|260916326|gb|EEX83187.1| ABC transporter [Brucella abortus bv. 3 str. Tulya]
Length = 605
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
RFL+N SR +WL V R+E F+E+ + VLE E
Sbjct: 177 RFLENVSRATVWLDRGVTRRLEQGFAHFEEWRDKVLEEEE 216
>gi|260755449|ref|ZP_05867797.1| ABC transporter [Brucella abortus bv. 6 str. 870]
gi|260675557|gb|EEX62378.1| ABC transporter [Brucella abortus bv. 6 str. 870]
Length = 605
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
RFL+N SR +WL V R+E F+E+ + VLE E
Sbjct: 177 RFLENVSRATVWLDRGVTRRLEQGFAHFEEWRDKVLEEEE 216
>gi|406861634|gb|EKD14688.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 80
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 45 EGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNPD 94
+G ++ D YMNI L AEE+ I + LG ++++ +N+ IQ N +
Sbjct: 22 KGRLVSIDSYMNIQLSGAEEW-IDQEMTSVLGQVLIRCNNVLWIQGANQN 70
>gi|260884466|ref|ZP_05896080.1| ABC transporter [Brucella abortus bv. 9 str. C68]
gi|297249018|ref|ZP_06932726.1| molybdate-transporting ATPase [Brucella abortus bv. 5 str. B3196]
gi|260873994|gb|EEX81063.1| ABC transporter [Brucella abortus bv. 9 str. C68]
gi|297174151|gb|EFH33508.1| molybdate-transporting ATPase [Brucella abortus bv. 5 str. B3196]
Length = 605
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
RFL+N SR +WL V R+E F+E+ + VLE E
Sbjct: 177 RFLENVSRATVWLDRGVTRRLEQGFAHFEEWRDKVLEEEE 216
>gi|265991783|ref|ZP_06104340.1| ABC transporter [Brucella melitensis bv. 1 str. Rev.1]
gi|263002739|gb|EEZ15142.1| ABC transporter [Brucella melitensis bv. 1 str. Rev.1]
Length = 605
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
RFL+N SR +WL V R+E F+E+ + VLE E
Sbjct: 177 RFLENVSRATVWLDRGVTRRLEQGFAHFEEWRDKVLEEEE 216
>gi|237816126|ref|ZP_04595122.1| ABC transporter, ATP-binding protein [Brucella abortus str. 2308 A]
gi|237788789|gb|EEP63001.1| ABC transporter, ATP-binding protein [Brucella abortus str. 2308 A]
Length = 609
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
RFL+N SR +WL V R+E F+E+ + VLE E
Sbjct: 181 RFLENVSRATVWLDRGVTRRLEQGFAHFEEWRDKVLEEEE 220
>gi|225628318|ref|ZP_03786352.1| ABC transporter, ATP-binding protein [Brucella ceti str. Cudo]
gi|225616164|gb|EEH13212.1| ABC transporter, ATP-binding protein [Brucella ceti str. Cudo]
Length = 609
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
RFL+N SR +WL V R+E F+E+ + VLE E
Sbjct: 181 RFLENVSRATVWLDRGVTRRLEQGFAHFEEWRDKVLEEEE 220
>gi|114050793|ref|NP_001040405.1| small nuclear ribonucleoprotein G [Bombyx mori]
gi|95102770|gb|ABF51326.1| small nuclear ribonucleoprotein G [Bombyx mori]
Length = 76
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 39 NVNLRIEGHILGFDEYMNIVL-ESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
N + G + GFD +MN+VL ES EE K R +G ++++G++I ++++L+
Sbjct: 22 NAGRAVTGVLRGFDPFMNLVLDESVEE--CKDGQRNNVGMVVIRGNSIIMLESLD 74
>gi|62290624|ref|YP_222417.1| ABC transporter ATP-binding protein [Brucella abortus bv. 1 str.
9-941]
gi|82700540|ref|YP_415114.1| H+-transporting two-sector ATPase subunit A [Brucella melitensis
biovar Abortus 2308]
gi|189024838|ref|YP_001935606.1| ABC transporter ATP-binding protein [Brucella abortus S19]
gi|260547137|ref|ZP_05822875.1| ABC transporter [Brucella abortus NCTC 8038]
gi|260758671|ref|ZP_05871019.1| ABC transporter [Brucella abortus bv. 4 str. 292]
gi|260762504|ref|ZP_05874841.1| ABC transporter [Brucella abortus bv. 2 str. 86/8/59]
gi|376272521|ref|YP_005151099.1| ABC transporter ATP-binding protein [Brucella abortus A13334]
gi|423169351|ref|ZP_17156052.1| hypothetical protein M17_03039 [Brucella abortus bv. 1 str. NI435a]
gi|423172499|ref|ZP_17159172.1| hypothetical protein M19_03030 [Brucella abortus bv. 1 str. NI474]
gi|423175635|ref|ZP_17162303.1| hypothetical protein M1A_03030 [Brucella abortus bv. 1 str. NI486]
gi|423178806|ref|ZP_17165449.1| hypothetical protein M1E_03045 [Brucella abortus bv. 1 str. NI488]
gi|423181938|ref|ZP_17168577.1| hypothetical protein M1G_03036 [Brucella abortus bv. 1 str. NI010]
gi|423185060|ref|ZP_17171695.1| hypothetical protein M1I_03027 [Brucella abortus bv. 1 str. NI016]
gi|423188214|ref|ZP_17174826.1| hypothetical protein M1K_03030 [Brucella abortus bv. 1 str. NI021]
gi|423191354|ref|ZP_17177961.1| hypothetical protein M1M_03033 [Brucella abortus bv. 1 str. NI259]
gi|62196756|gb|AAX75056.1| ABC transporter, ATP-binding protein [Brucella abortus bv. 1 str.
9-941]
gi|82616641|emb|CAJ11722.1| H+-transporting two-sector ATPase, A subunit:ATP/GTP-binding site
motif A (P-loop):ABC transporter:AAA ATPase [Brucella
melitensis biovar Abortus 2308]
gi|189020410|gb|ACD73132.1| ABC transporter, ATP-binding protein [Brucella abortus S19]
gi|260095502|gb|EEW79380.1| ABC transporter [Brucella abortus NCTC 8038]
gi|260668989|gb|EEX55929.1| ABC transporter [Brucella abortus bv. 4 str. 292]
gi|260672930|gb|EEX59751.1| ABC transporter [Brucella abortus bv. 2 str. 86/8/59]
gi|363400127|gb|AEW17097.1| ABC transporter, ATP-binding protein [Brucella abortus A13334]
gi|374535069|gb|EHR06596.1| hypothetical protein M1A_03030 [Brucella abortus bv. 1 str. NI486]
gi|374535262|gb|EHR06788.1| hypothetical protein M19_03030 [Brucella abortus bv. 1 str. NI474]
gi|374535537|gb|EHR07059.1| hypothetical protein M17_03039 [Brucella abortus bv. 1 str. NI435a]
gi|374544569|gb|EHR16039.1| hypothetical protein M1E_03045 [Brucella abortus bv. 1 str. NI488]
gi|374544860|gb|EHR16325.1| hypothetical protein M1G_03036 [Brucella abortus bv. 1 str. NI010]
gi|374545037|gb|EHR16501.1| hypothetical protein M1I_03027 [Brucella abortus bv. 1 str. NI016]
gi|374552865|gb|EHR24287.1| hypothetical protein M1K_03030 [Brucella abortus bv. 1 str. NI021]
gi|374553059|gb|EHR24480.1| hypothetical protein M1M_03033 [Brucella abortus bv. 1 str. NI259]
Length = 605
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
RFL+N SR +WL V R+E F+E+ + VLE E
Sbjct: 177 RFLENVSRATVWLDRGVTRRLEQGFAHFEEWRDKVLEEEE 216
>gi|350416213|ref|XP_003490876.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm11-like [Bombus
impatiens]
Length = 223
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLR--IEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
P+ ++ ++++R+RV+++ +R +E ++ FD++ N+ LE E + RKA
Sbjct: 113 PLGMLHGYMESRTRVKVYTRNARGIRGHVEAYVAAFDKHWNLALEDCFEVWTRKVKRKA 171
>gi|326427782|gb|EGD73352.1| LSM domain-containing protein [Salpingoeca sp. ATCC 50818]
Length = 77
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 25 FLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDN 84
FL+ R ++ + N + G + D +MN+ LE EEY + K G ++G+N
Sbjct: 8 FLKKIHRQKVVVKLNSGITFTGRLAALDAFMNVALEDTEEY-VNGKQTAKYGDAFVRGNN 66
Query: 85 ITLIQNLNPDE 95
+ I +E
Sbjct: 67 VLYISPAEEEE 77
>gi|225853205|ref|YP_002733438.1| ABC transporter [Brucella melitensis ATCC 23457]
gi|256263304|ref|ZP_05465836.1| ABC transporter [Brucella melitensis bv. 2 str. 63/9]
gi|265995623|ref|ZP_06108180.1| ABC transporter [Brucella melitensis bv. 3 str. Ether]
gi|384212113|ref|YP_005601196.1| ABC transporter [Brucella melitensis M5-90]
gi|384409216|ref|YP_005597837.1| ABC transporter-like protein [Brucella melitensis M28]
gi|384445769|ref|YP_005604488.1| ABC transporter [Brucella melitensis NI]
gi|225641570|gb|ACO01484.1| ABC transporter related protein [Brucella melitensis ATCC 23457]
gi|262766907|gb|EEZ12525.1| ABC transporter [Brucella melitensis bv. 3 str. Ether]
gi|263093274|gb|EEZ17371.1| ABC transporter [Brucella melitensis bv. 2 str. 63/9]
gi|326409763|gb|ADZ66828.1| ABC transporter-like protein [Brucella melitensis M28]
gi|326539477|gb|ADZ87692.1| ABC transporter related protein [Brucella melitensis M5-90]
gi|349743758|gb|AEQ09301.1| ABC transporter related protein [Brucella melitensis NI]
Length = 605
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
RFL+N SR +WL V R+E F+E+ + VLE E
Sbjct: 177 RFLENVSRATVWLDRGVTRRLEQGFAHFEEWRDKVLEEEE 216
>gi|357619057|gb|EHJ71789.1| small nuclear ribonucleoprotein G [Danaus plexippus]
Length = 76
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 39 NVNLRIEGHILGFDEYMNIVL-ESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
N + G + GFD +MN+VL ES EE K R +G ++++G++I ++++L+
Sbjct: 22 NAGRAVTGVLRGFDPFMNLVLDESVEE--CKDGQRNNIGMVVIRGNSIIMLESLD 74
>gi|294950648|ref|XP_002786721.1| Small nuclear ribonucleoprotein G, putative [Perkinsus marinus
ATCC 50983]
gi|239901040|gb|EER18517.1| Small nuclear ribonucleoprotein G, putative [Perkinsus marinus
ATCC 50983]
Length = 87
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGD 83
RF++ R V++ N + + G + G+D++MN+VL++A E +++ R+ +G +++G+
Sbjct: 19 RFMEKRIDVKL----NADRHVVGVVRGYDQFMNLVLDNAVELVSRTEKRE-IGMAVIRGN 73
Query: 84 NITLIQNLN 92
+I + + L+
Sbjct: 74 SILMWECLD 82
>gi|18860007|ref|NP_573139.1| small ribonucleoprotein particle protein SmG, isoform A
[Drosophila melanogaster]
gi|221372123|ref|NP_001138209.1| small ribonucleoprotein particle protein SmG, isoform B
[Drosophila melanogaster]
gi|195351500|ref|XP_002042272.1| GM13382 [Drosophila sechellia]
gi|195567140|ref|XP_002107128.1| GD15738 [Drosophila simulans]
gi|29428065|sp|Q9VXE0.1|RUXG_DROME RecName: Full=Probable small nuclear ribonucleoprotein G;
Short=snRNP-G; AltName: Full=Sm protein G; Short=Sm-G;
Short=SmG
gi|7293253|gb|AAF48634.1| small ribonucleoprotein particle protein SmG, isoform A
[Drosophila melanogaster]
gi|17944563|gb|AAL48169.1| RH35475p [Drosophila melanogaster]
gi|194124115|gb|EDW46158.1| GM13382 [Drosophila sechellia]
gi|194204529|gb|EDX18105.1| GD15738 [Drosophila simulans]
gi|220901796|gb|ACL82939.1| small ribonucleoprotein particle protein SmG, isoform B
[Drosophila melanogaster]
gi|220952224|gb|ACL88655.1| SmG-PA [synthetic construct]
Length = 76
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
+ G + GFD +MN+VL+ E K T+ +G ++++G++I +++ L+
Sbjct: 27 VTGILRGFDPFMNVVLDDTVE-ECKDNTKNNIGMVVIRGNSIVMVEALD 74
>gi|384497931|gb|EIE88422.1| hypothetical protein RO3G_13133 [Rhizopus delemar RA 99-880]
Length = 76
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVL-ESAEEYNIKSKTRKALGTIMLKGDNITLIQNL 91
+I L N N ++ G + G+D +MNIVL E+ EE + R +G ++++G++I +++ L
Sbjct: 16 RISLQLNGNRKVTGVLRGYDPFMNIVLDETVEE--VSPTERNNIGMVVIRGNSIAIMEAL 73
>gi|169602875|ref|XP_001794859.1| hypothetical protein SNOG_04441 [Phaeosphaeria nodorum SN15]
gi|160706278|gb|EAT88201.2| hypothetical protein SNOG_04441 [Phaeosphaeria nodorum SN15]
Length = 84
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 44/70 (62%), Gaps = 7/70 (10%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESA-EEYNIKSKTRKALGTIMLKG 82
++L+ R VQ+ N + ++ G + G+D Y+NIVL+ A EE KTR +G ++++G
Sbjct: 10 KYLEKRVLVQL----NGSRKVMGILRGYDVYLNIVLDEALEEKAGGEKTR--IGMVVIRG 63
Query: 83 DNITLIQNLN 92
+ + +++ L+
Sbjct: 64 NAVVMLEALD 73
>gi|340711443|ref|XP_003394285.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm11-like [Bombus
terrestris]
Length = 223
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLR--IEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
P+ ++ ++++R+RV+++ +R +E ++ FD++ N+ LE E + RKA
Sbjct: 113 PLGMLHGYMESRTRVKVYTRNARGIRGHVEAYVAAFDKHWNLALEDCFEVWTRKVKRKA 171
>gi|331214923|ref|XP_003320142.1| hypothetical protein PGTG_01054 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309299132|gb|EFP75723.1| hypothetical protein PGTG_01054 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 197
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 32/99 (32%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
MAPK Q M+ IN R N SR + G +L FD ++N+VL EE+
Sbjct: 1 MAPK-QSKMLALINYRLRVTLNDSRT-----------LTGQMLAFDRHLNLVLADCEEFR 48
Query: 67 -IKSKTRK-------------------ALGTIMLKGDNI 85
IK K +K ALG ++L+G+ I
Sbjct: 49 FIKQKKKKGGLAANSNVEENEELEMKRALGLVILRGETI 87
>gi|297841127|ref|XP_002888445.1| hypothetical protein ARALYDRAFT_315605 [Arabidopsis lyrata subsp.
lyrata]
gi|297334286|gb|EFH64704.1| hypothetical protein ARALYDRAFT_315605 [Arabidopsis lyrata subsp.
lyrata]
Length = 590
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 22/94 (23%)
Query: 23 FRFLQNRSRVQIW-LYENVNLRIE------------------GHILGFDEYMNIVLESAE 63
FRF N+ + +W +Y N +E G + GFD+ NI+L+ +
Sbjct: 477 FRFESNKGHIVLWTVYMATNTGLEDLVNQIISVITNDGRNIVGVLKGFDQATNIILDESH 536
Query: 64 EYNIKSK---TRKALGTIMLKGDNITLIQNLNPD 94
E +K + LG +++GDNI +I L+ +
Sbjct: 537 ERVFSTKEGVQQHVLGLYIIRGDNIGVIGELDEE 570
>gi|221056272|ref|XP_002259274.1| small nuclear ribonucleoprotein f [Plasmodium knowlesi strain H]
gi|193809345|emb|CAQ40047.1| small nuclear ribonucleoprotein f, putative [Plasmodium knowlesi
strain H]
Length = 86
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 42 LRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
+ +G++ FD YMNI L +AEE+ I + + LG I L+ +NI I+
Sbjct: 30 MEYKGNLKSFDAYMNIRLANAEEW-IHGEYKGTLGEIFLRCNNILYIR 76
>gi|46124883|ref|XP_386995.1| hypothetical protein FG06819.1 [Gibberella zeae PH-1]
Length = 89
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVN------LRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
P+ LI + + +R IW+ + G ++GFD+Y+N+VLE E++
Sbjct: 7 PLELIDKCVGSR----IWVIMKGDKGKMSLAEFSGTLVGFDDYVNMVLEDVTEFDYSGNH 62
Query: 72 RKALGTIMLKGDNITLI 88
K L I+L G+NI ++
Sbjct: 63 TK-LPKILLNGNNICML 78
>gi|356538387|ref|XP_003537685.1| PREDICTED: probable small nuclear ribonucleoprotein G [Glycine
max]
gi|255630063|gb|ACU15385.1| unknown [Glycine max]
Length = 79
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
++QI L N N I G + GFD++MN+V+++ E N K +G ++++G+++ ++
Sbjct: 17 KLQIKL--NGNRMIVGTLRGFDQFMNLVVDNTVEVNGNEKN--DIGMVVIRGNSVVTVEA 72
Query: 91 LNP 93
L P
Sbjct: 73 LEP 75
>gi|124512338|ref|XP_001349302.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
gi|23499071|emb|CAD51151.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
Length = 83
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 49/80 (61%), Gaps = 6/80 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P + +F++ R+QI+L N N ++ G + G+D +MN+VL++ E IK + +G
Sbjct: 10 PASDFRKFME--KRLQIYL--NGNRQVVGILRGYDTFMNLVLDNTME--IKKDEQIDIGV 63
Query: 78 IMLKGDNITLIQNLNPDEVK 97
++++G++I+ + L+ +K
Sbjct: 64 VVIRGNSISYWECLDKVNIK 83
>gi|443924091|gb|ELU43165.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 81
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK 73
V P+N FLQ + +++ L +G+++ D YMN+ L + EE+ K+
Sbjct: 2 ATVAPVNPK-PFLQELTGKPVFVRLKWGLEYKGYLVSTDSYMNLQLANTEEFE-DGKSNG 59
Query: 74 ALGTIMLKGDNITLIQNLNPD 94
ALG + ++ +N+ I+ D
Sbjct: 60 ALGEVFIRCNNVLYIREAPSD 80
>gi|401625995|gb|EJS43964.1| lsm5p [Saccharomyces arboricola H-6]
Length = 93
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Query: 41 NLRIEGHILGFDEYMNIVLESAEEYNIK-------SKTRKALGTIMLKGDNITLI 88
N EG ++GFD+++N++LE A E+ I K + G ++L G+NI ++
Sbjct: 27 NREFEGTLVGFDDFVNVILEDAVEWLIDPEDETRNEKVMQHHGRMLLSGNNIAIL 81
>gi|194891288|ref|XP_001977464.1| GG18240 [Drosophila erecta]
gi|195479283|ref|XP_002100833.1| GE15956 [Drosophila yakuba]
gi|190649113|gb|EDV46391.1| GG18240 [Drosophila erecta]
gi|194188357|gb|EDX01941.1| GE15956 [Drosophila yakuba]
Length = 76
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
+ G + GFD +MN+VL+ E K T+ +G ++++G++I +++ L+
Sbjct: 27 VTGILRGFDPFMNVVLDDTVE-ECKDNTKNNIGMVVIRGNSIVMVEALD 74
>gi|392577759|gb|EIW70888.1| hypothetical protein TREMEDRAFT_29158 [Tremella mesenterica DSM
1558]
Length = 85
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSK--TRKALGTIMLKGDNITLI 88
G ++GFD+Y+N+VL +EY + LG +L G+NI ++
Sbjct: 31 GTLMGFDDYVNMVLRDVKEYQVTPGGIIETPLGQTLLNGNNIVML 75
>gi|302686860|ref|XP_003033110.1| hypothetical protein SCHCODRAFT_67091 [Schizophyllum commune
H4-8]
gi|300106804|gb|EFI98207.1| hypothetical protein SCHCODRAFT_67091 [Schizophyllum commune
H4-8]
Length = 179
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 13/65 (20%)
Query: 46 GHILGFDEYMNIVLESAEEY-NIKSK------------TRKALGTIMLKGDNITLIQNLN 92
G +L FD +MN+VL EE+ I+ K ++ALG ++L+G+ + + +
Sbjct: 31 GQMLAFDRHMNLVLAECEEFRRIRPKKKPGQETQPEQEVKRALGLVILRGETVVSLSVES 90
Query: 93 PDEVK 97
P V+
Sbjct: 91 PPPVQ 95
>gi|52548448|gb|AAU82297.1| small nuclear riboprotein-like protein [uncultured archaeon
GZfos13E1]
Length = 74
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
+EG + D+Y+N+ L A E + R+ LG+++++G+N+ LI +N
Sbjct: 26 LEGVLTSVDDYLNLHLSGANELE-NGERRRLLGSVVVRGNNVVLIHPMN 73
>gi|300176167|emb|CBK23478.2| unnamed protein product [Blastocystis hominis]
Length = 234
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 17/80 (21%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY-NIKSKT--------------RKAL 75
R+++ + EN L G ++ FD++MN++L EE+ I+SK+ + L
Sbjct: 8 RMRVVIRENRVL--VGTLMAFDKHMNLILGDCEEFRKIRSKSGVAVVNGVIEEREEKNTL 65
Query: 76 GTIMLKGDNITLIQNLNPDE 95
G ++L+G+NI +Q P
Sbjct: 66 GLVLLRGENIVSLQIEGPPP 85
>gi|399217705|emb|CCF74592.1| unnamed protein product [Babesia microti strain RI]
Length = 79
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 7/69 (10%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGD 83
RF++ R + +Y N + I G + G+D +MNIVL++A + ++ LGT++L+G+
Sbjct: 13 RFMEKR----LDIYLNGHRHIVGVLRGYDTFMNIVLDNALKI---GDEKEELGTVVLRGN 65
Query: 84 NITLIQNLN 92
+I + L+
Sbjct: 66 SIVCWECLD 74
>gi|242786335|ref|XP_002480785.1| U6 snRNA-associated Sm-like protein LSm6, putative [Talaromyces
stipitatus ATCC 10500]
gi|218720932|gb|EED20351.1| U6 snRNA-associated Sm-like protein LSm6, putative [Talaromyces
stipitatus ATCC 10500]
Length = 80
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
N + +G + D YMNI LE EEY + + R++ G ++G+N+ I
Sbjct: 29 NSGVVYQGELQSVDGYMNIALEKTEEY-VNGQLRRSYGDTFVRGNNVLYI 77
>gi|346978373|gb|EGY21825.1| LSM domain-containing protein [Verticillium dahliae VdLs.17]
Length = 84
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 1 MSGGFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLE 60
M G AP Q P + + + N V++ N + +G + D YMNI LE
Sbjct: 1 MENGNPSAP--QGEGKDPSSFLSDIIGNAVTVKL----NSGVVYKGELQSVDGYMNIALE 54
Query: 61 SAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
EEY + R++ G ++G+N+ I
Sbjct: 55 KTEEY-VNGTKRRSYGDAFVRGNNVMYIS 82
>gi|336272660|ref|XP_003351086.1| hypothetical protein SMAC_05965 [Sordaria macrospora k-hell]
Length = 189
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 5/55 (9%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNI 85
R+++ L N ++ G +L FD++MN+VL AEE+ + +T LG +++G +I
Sbjct: 17 RMRVTL--NDGRQMTGQMLAFDKHMNLVLADAEEFRQEKRT---LGLTIIRGAHI 66
>gi|305662480|ref|YP_003858768.1| Sm ribonucleoprotein-like protein [Ignisphaera aggregans DSM
17230]
gi|304377049|gb|ADM26888.1| Like-Sm ribonucleoprotein core [Ignisphaera aggregans DSM 17230]
Length = 78
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
+ G + +D ++NIVL+ AEE + + + LGT++++G+N+ +I
Sbjct: 32 VRGKLRSYDLHLNIVLDDAEE-ELSDGSWRKLGTVLIRGENVVVIS 76
>gi|393215720|gb|EJD01211.1| like-Sm ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 77
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNL 91
+++++ ++ G + GFD ++N+VL+ A E ++ + +G ++++G+++TL++ L
Sbjct: 16 KLFVHLQGGRKVSGTLRGFDIFLNLVLDDAIEETTPAQ-KSPIGNVVIRGNSVTLMETL 73
>gi|313215037|emb|CBY41217.1| unnamed protein product [Oikopleura dioica]
Length = 69
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + SR+ I + + I G +LGFDE++N+VLE EY S +K L
Sbjct: 7 PLELVDKCIG--SRIHIIMRNDK--EIVGTLLGFDEFVNMVLEDVTEYEATSDGKKITKL 62
Query: 76 GTIMLKG 82
I+L G
Sbjct: 63 EQILLNG 69
>gi|170088114|ref|XP_001875280.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650480|gb|EDR14721.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 82
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK 73
V P+N FLQ + +++ L +G ++ D YMN+ L + EEY ++
Sbjct: 2 AAVNPVNPK-PFLQELTGKPVFVRLKWGLEYKGFLVSTDGYMNLQLANTEEYQ-DGQSNG 59
Query: 74 ALGTIMLKGDNITLIQNLNPD 94
ALG + ++ +N+ I+ P+
Sbjct: 60 ALGEVFIRCNNVLYIREAPPE 80
>gi|71003313|ref|XP_756337.1| hypothetical protein UM00190.1 [Ustilago maydis 521]
gi|46096342|gb|EAK81575.1| hypothetical protein UM00190.1 [Ustilago maydis 521]
Length = 117
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 21/90 (23%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMN--------------IVLES 61
+ P+ LI + + + IW+ + G +LGFD+Y+N +VLE
Sbjct: 22 ILPLELIDKCIGS----SIWVIMKTDREFSGTLLGFDDYVNAMIDNHSSLAVHADMVLED 77
Query: 62 AEEYNIKSKTRK---ALGTIMLKGDNITLI 88
EY +K LG +L G+NI ++
Sbjct: 78 VTEYETTPDGKKKKTKLGQTLLNGNNICML 107
>gi|307353828|ref|YP_003894879.1| small nuclear riboprotein-like protein [Methanoplanus
petrolearius DSM 11571]
gi|307157061|gb|ADN36441.1| Like-Sm ribonucleoprotein core [Methanoplanus petrolearius DSM
11571]
Length = 78
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA 74
+V PI ++ + ++ V+I E LR G ++ DE++NI ++ A EY + + R
Sbjct: 5 IVLPIKKVYALIDSKIIVEIK-DEPKTLR--GRLVAVDEHLNIHMDQACEYEGEERGRN- 60
Query: 75 LGTIMLKGDNITLI 88
LGT++++G NI I
Sbjct: 61 LGTLVIRGSNILTI 74
>gi|195588134|ref|XP_002083813.1| GD13932 [Drosophila simulans]
gi|194195822|gb|EDX09398.1| GD13932 [Drosophila simulans]
Length = 55
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRK--ALGTIMLKGDNITLI 88
G +LGFD+++N++L+ EY R+ L I+L G+NIT++
Sbjct: 3 GTLLGFDDFVNMLLDDVTEYENTPDGRRITKLDQILLNGNNITML 47
>gi|195374175|ref|XP_002046059.1| GM26694 [Drosophila sechellia]
gi|194123247|gb|EDW45290.1| GM26694 [Drosophila sechellia]
Length = 61
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRK--ALGTIMLKGDNITLI 88
G +LGFD+++N++L+ EY R+ L I+L G+NIT++
Sbjct: 9 GTLLGFDDFVNMLLDDVTEYENTPDGRRITKLDQILLNGNNITML 53
>gi|194763519|ref|XP_001963880.1| GF21254 [Drosophila ananassae]
gi|190618805|gb|EDV34329.1| GF21254 [Drosophila ananassae]
Length = 101
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
++ L N + G + GFD +MN+VL+ E K T+ +G ++++G++I +++ L+
Sbjct: 41 RMMLKLNGGRAVTGILRGFDPFMNVVLDDTVE-ECKDNTKNNIGMVVIRGNSIVMVEALD 99
>gi|308808123|ref|XP_003081372.1| Ypt/Rab GTPase activating protein (ISS) [Ostreococcus tauri]
gi|116059834|emb|CAL55541.1| Ypt/Rab GTPase activating protein (ISS) [Ostreococcus tauri]
Length = 836
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 42 LRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNPDE 95
+ G ++ D YMN+ L S EEY I + + ALG ++++ +N+ ++ + +E
Sbjct: 784 MEYRGFLVSTDAYMNLQLASTEEY-IDGELQGALGEVLIRCNNVMYLRGVEEEE 836
>gi|341882586|gb|EGT38521.1| hypothetical protein CAEBREN_25112 [Caenorhabditis brenneri]
gi|341895108|gb|EGT51043.1| hypothetical protein CAEBREN_10134 [Caenorhabditis brenneri]
Length = 77
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
N N + G + GFD +MN+V++ A EY KS LG +++G+++ +++
Sbjct: 22 NGNRHVSGILRGFDPFMNMVIDEAVEYT-KSGASVNLGMTVIRGNSVVIME 71
>gi|339260352|ref|XP_003368450.1| putative LSM domain protein [Trichinella spiralis]
gi|316964864|gb|EFV49782.1| putative LSM domain protein [Trichinella spiralis]
Length = 62
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 41 NLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--LGTIMLKGDNITLI 88
N + G +LGFD+Y+NIVLE EY ++ ++ L I+L G +I ++
Sbjct: 4 NKELVGTLLGFDDYVNIVLEDVIEYETTTEGKRITRLDQILLNGTHIAML 53
>gi|306841470|ref|ZP_07474170.1| ABC transporter, ATP-binding protein [Brucella sp. BO2]
gi|306288434|gb|EFM59790.1| ABC transporter, ATP-binding protein [Brucella sp. BO2]
Length = 578
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
RFL+N SR +WL V R+E F+E+ + VLE E
Sbjct: 150 RFLENVSRATVWLDRGVTRRLEQGFAYFEEWRDKVLEEEE 189
>gi|308806167|ref|XP_003080395.1| Sm-like protein (ISS) [Ostreococcus tauri]
gi|116058855|emb|CAL54562.1| Sm-like protein (ISS) [Ostreococcus tauri]
Length = 95
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALG- 76
P L+ R + + +W+ + G + GFD Y+N+VLE EY + + R G
Sbjct: 17 PSELVERCVGS----PLWVLMKGEKEMTGTLRGFDVYVNMVLEDVTEYEMTANGRVETGR 72
Query: 77 --TIMLKGDNITLI 88
I+L G+N+ ++
Sbjct: 73 MDQILLNGNNVAIL 86
>gi|393219456|gb|EJD04943.1| U6 snRNA-associated Sm-like protein LSm7 [Fomitiporia mediterranea
MF3/22]
Length = 134
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 4 GFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
G + A + K + I + +++ R RV+ V G + G+D+ +N+VL+ E
Sbjct: 35 GAQGAQQADKPKREAILDLQKYMNERIRVKFTGGREVT----GILKGYDQLLNLVLDDVE 90
Query: 64 EYNIKSKTRK-ALGTIMLKGDNITLIQNLNP 93
E + + RK +LG ++L+G ITL LNP
Sbjct: 91 EQLHEPEPRKRSLGLVVLRGPTITL---LNP 118
>gi|288554595|ref|YP_003426530.1| aminotransferase NifS protein [Bacillus pseudofirmus OF4]
gi|288545755|gb|ADC49638.1| aminotransferase required for NAD biosynthesis (NifS protein)
[Bacillus pseudofirmus OF4]
Length = 382
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 3 GGFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFD-EYMNIVLES 61
GG ++A + +V+ + N + F + +W Y+N + + I GF E + ++ +
Sbjct: 35 GGHQLAERAGRVIQEARNELAAFFNAPNGKHVWFYQNATMALNQAISGFPFEEGDHIVTT 94
Query: 62 AEEYNIKSKTRKALGTIMLKGDNITLIQNLNPDE 95
A E+N S R L+G ++T IQ PDE
Sbjct: 95 AFEHN--SVLRPLHQAAKLRGISVTYIQ---PDE 123
>gi|391336578|ref|XP_003742656.1| PREDICTED: uncharacterized protein LOC100908975 [Metaseiulus
occidentalis]
Length = 406
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLR--IEGHILGFDEYMNIVLESAEE 64
PI+++ + L N+ RV++W+ + +R + G + FD+++N+ L +E
Sbjct: 127 PISILHKALTNKLRVKVWVRSHSTVRSILTGFVAAFDKHLNLALVDVDE 175
>gi|308806556|ref|XP_003080589.1| Small Nuclear ribonucleoprotein splicing factor (ISS)
[Ostreococcus tauri]
gi|116059050|emb|CAL54757.1| Small Nuclear ribonucleoprotein splicing factor (ISS)
[Ostreococcus tauri]
Length = 110
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEE--YNIKSKTRKA-LGTIMLKGDNITL 87
++ + N + G + GFD+ N++LE E Y+ +S +A LG M++GDN+ +
Sbjct: 13 HARVHVLTNDGRHVVGTLRGFDQVTNVILEDCAERVYSSESGVEEAPLGVYMIRGDNVCV 72
>gi|50545437|ref|XP_500256.1| YALI0A19756p [Yarrowia lipolytica]
gi|49646121|emb|CAG84194.1| YALI0A19756p [Yarrowia lipolytica CLIB122]
Length = 131
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNPDEV 96
+ GH+L D +MN+ L+ EE++ + + ++G NI +Q PDE+
Sbjct: 27 LRGHLLKCDHWMNLTLKEVEEFSASGENTATVSEYYVRGSNIKALQ--LPDEL 77
>gi|323305294|gb|EGA59041.1| Lsm5p [Saccharomyces cerevisiae FostersB]
Length = 116
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 7/55 (12%)
Query: 41 NLRIEGHILGFDEYMNIVLESAEEYNI----KSKTRKAL---GTIMLKGDNITLI 88
N EG ++GFD+++N++LE A E+ I +S+ K + G ++L G+NI ++
Sbjct: 27 NREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNGKVMQHHGRMLLSGNNIAIL 81
>gi|354459632|pdb|3SWN|A Chain A, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
gi|354459635|pdb|3SWN|D Chain D, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
gi|354459638|pdb|3SWN|P Chain P, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
gi|354459641|pdb|3SWN|S Chain S, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
Length = 82
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKAL 75
+ P+ LI + + + +W+ G ++GFD+Y+NIVL+ EY+ + +
Sbjct: 7 ILPLELIDKCIGS----NLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKH 62
Query: 76 GTIMLKGDNITLI 88
++L G+ + ++
Sbjct: 63 SEMLLNGNGMCML 75
>gi|268324345|emb|CBH37933.1| conserved hypothetical protein, containing LSM domain [uncultured
archaeon]
Length = 74
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKA-LGTIMLKGDNITLI 88
+EG + D+Y+N+ L SA E I++ RK LG+++L+G+N+ LI
Sbjct: 26 LEGILTSVDDYLNLHLSSASE--IQNGVRKRLLGSVILRGNNVVLI 69
>gi|389583811|dbj|GAB66545.1| small nuclear ribonucleoprotein F [Plasmodium cynomolgi strain B]
Length = 57
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 42 LRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
+ +G++ FD YMNI L +AEE+ I + + LG I L+ +NI I+
Sbjct: 1 MEYKGNLKSFDAYMNIRLANAEEW-IHGEYKGTLGEIFLRCNNILYIR 47
>gi|221484764|gb|EEE23058.1| hypothetical protein TGGT1_039230 [Toxoplasma gondii GT1]
Length = 117
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK 73
+ V P+N FL + + Q+ + + +G++ FDEYMN+ L++ EE+ + +
Sbjct: 32 LQVTPVNPK-PFLTSLTGRQVMVKLKWGIEYKGYLKSFDEYMNLQLQNTEEW-VDGSFKG 89
Query: 74 ALGTIMLKGDNITLIQNL 91
LG ++L+ +N+ ++ +
Sbjct: 90 HLGEVLLRCNNVLYLRQV 107
>gi|17510511|ref|NP_491032.1| Protein SNR-7 [Caenorhabditis elegans]
gi|29428018|sp|Q9N4G9.1|RUXG_CAEEL RecName: Full=Probable small nuclear ribonucleoprotein G;
Short=snRNP-G; AltName: Full=Sm protein G; Short=Sm-G;
Short=SmG
gi|12276019|gb|AAG50222.1|AF303264_1 SM protein G [Caenorhabditis elegans]
gi|351062434|emb|CCD70411.1| Protein SNR-7 [Caenorhabditis elegans]
Length = 77
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
N N R+ G + GFD +MN+V++ A EY K LG +++G+++ +++
Sbjct: 22 NGNRRVSGILRGFDPFMNMVIDEAVEYQ-KDGGSVNLGMTVIRGNSVVIME 71
>gi|50546793|ref|XP_500866.1| YALI0B14058p [Yarrowia lipolytica]
gi|49646732|emb|CAG83117.1| YALI0B14058p [Yarrowia lipolytica CLIB122]
Length = 85
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 9 PKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIK 68
P+V +++ P+ L+ + + ++ I + + G ++GFD+++N+VLE E N K
Sbjct: 7 PQVSQIL--PLELVDKCIGSK----ILVLVKSKVEFTGTLVGFDDFVNMVLEDVTEVNTK 60
Query: 69 SKTRKALGTIMLKGDNITLI 88
+ ++L G +I ++
Sbjct: 61 TGKETNHSKLLLSGKSIYML 80
>gi|354544771|emb|CCE41496.1| hypothetical protein CPAR2_800480 [Candida parapsilosis]
Length = 79
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 30 SRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLI 88
S V++ LY V R G + D YMN+VLE+ +E+ IK + G + L+G+ + I
Sbjct: 21 SPVKVKLYSGVEYR--GDLQTIDGYMNVVLENGKEF-IKDTMTRDYGDLFLRGNTVLYI 76
>gi|195447608|ref|XP_002071290.1| GK25208 [Drosophila willistoni]
gi|194167375|gb|EDW82276.1| GK25208 [Drosophila willistoni]
Length = 76
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
+ G + GFD +MN+VL+ E K T+ +G ++++G++I +++ L+
Sbjct: 27 VNGILRGFDPFMNVVLDDTIE-ECKDNTKNNIGMVVIRGNSIVMVEALD 74
>gi|392575745|gb|EIW68877.1| hypothetical protein TREMEDRAFT_39244 [Tremella mesenterica DSM
1558]
Length = 94
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 32 VQIWLYENVNLRIEGHILGFDEYMNIVLESA--EEYNIKSKTRKALGTIMLKGDNITLIQ 89
VQ+ LY+ I G + G+D N++L EY+++ LG M+KGDN+ +I
Sbjct: 12 VQVILYDG--RVIVGKLRGYDPRTNLILSDCVEREYSLEGVEMVPLGLYMIKGDNVAIIG 69
Query: 90 NLNPD 94
++ D
Sbjct: 70 EMDED 74
>gi|329765753|ref|ZP_08257322.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329137819|gb|EGG42086.1| like-Sm ribonucleoprotein core [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 76
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 27 QNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNIT 86
N+++V + N N + G + FD +MN+ L++AE+ I +LG I+L+GDNI
Sbjct: 11 NNKNKVILLRLRN-NKSVRGSLQDFDIHMNLTLDNAED--ISDNKVVSLGRILLRGDNIL 67
Query: 87 LIQNLNPDE 95
+ PDE
Sbjct: 68 AVS--LPDE 74
>gi|330802101|ref|XP_003289059.1| hypothetical protein DICPUDRAFT_88331 [Dictyostelium purpureum]
gi|325080893|gb|EGC34430.1| hypothetical protein DICPUDRAFT_88331 [Dictyostelium purpureum]
Length = 250
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 9/64 (14%)
Query: 44 IEGHILGFDEYMNIVLESAEEY-NIKSKT------RKALGTIMLKGDNIT--LIQNLNPD 94
I G L FD++MN+V+ AEE+ IK K ++ LG ++++G+ + ++ P+
Sbjct: 28 IVGRFLAFDKHMNVVICDAEEFRRIKQKGKEDREEKRTLGMLLIRGETVVSMSVEAPPPE 87
Query: 95 EVKV 98
E K+
Sbjct: 88 EAKL 91
>gi|213404670|ref|XP_002173107.1| small nuclear ribonucleoprotein [Schizosaccharomyces japonicus
yFS275]
gi|212001154|gb|EEB06814.1| small nuclear ribonucleoprotein [Schizosaccharomyces japonicus
yFS275]
Length = 77
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA-LGTIMLKGDNITLIQNL 91
Q+++ N + ++ G + G+D ++NIV+E A Y KS KA +G+ ++G+++ +I+ L
Sbjct: 16 QVFVQLNGSRKVYGVLRGYDIFLNIVVEDA--YEEKSTGEKAPIGSAAIRGNSVIMIEAL 73
Query: 92 N 92
+
Sbjct: 74 D 74
>gi|19113165|ref|NP_596373.1| U6 snRNP-associated protein Lsm5 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74626712|sp|O42978.2|LSM5_SCHPO RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|4539252|emb|CAA16849.2| U6 snRNP-associated protein Lsm5 (predicted) [Schizosaccharomyces
pombe]
Length = 80
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKAL 75
+ P+ LI + + + +W+ G ++GFD+Y+NIVL+ EY+ + +
Sbjct: 5 ILPLELIDKCIGS----NLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKH 60
Query: 76 GTIMLKGDNITLI 88
++L G+ + ++
Sbjct: 61 SEMLLNGNGMCML 73
>gi|328858459|gb|EGG07571.1| hypothetical protein MELLADRAFT_71607 [Melampsora larici-populina
98AG31]
Length = 114
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN-IKSKTRKALGT 77
R+++ L ++ L G +L FD ++N+VL EE+ IK K RK L T
Sbjct: 8 RLRVTLNDSRTL--TGQMLAFDRHLNLVLADCEEFRFIKQKKRKGLST 53
>gi|123977181|ref|XP_001330763.1| Sm protein [Trichomonas vaginalis G3]
gi|121912574|gb|EAY17394.1| Sm protein [Trichomonas vaginalis G3]
Length = 107
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 42 LRIEGHILGFDEYMNIVLESAEEYNIKSKTR--KALGTIMLKGDNITLIQNLNPDEVKV 98
L +G ++ +DE+MN+VL EE ++ R K +G ++++G N++ ++ + E+ V
Sbjct: 24 LSFQGILMNYDEHMNLVLRQVEEIPQDNQQREPKRIGLMVMRGCNVSTVEAVQLPEITV 82
>gi|430813244|emb|CCJ29390.1| unnamed protein product [Pneumocystis jirovecii]
Length = 76
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNL 91
+++L N + ++ G + G+D ++NIVL+ A E + + A+GT++++G+++ +++ L
Sbjct: 16 KVFLMLNGSRKVIGVLRGYDVFLNIVLDEAFEEK-EGGEKCAIGTVVIRGNSVVMVEAL 73
>gi|353237612|emb|CCA69581.1| hypothetical protein PIIN_03520 [Piriformospora indica DSM 11827]
Length = 98
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSK---TRKALGTIMLKGDNITLIQNLNP 93
I G+++G+D+ NIVL E + T ALG M+KGD I L+ ++
Sbjct: 22 IMGNLVGWDQRSNIVLADCVERRFSQESGATDSALGVYMVKGDQICLVGEVDA 74
>gi|187610687|gb|ACD13592.1| small nuclear ribonucleoprotein polypeptide G [Penaeus monodon]
gi|408842889|gb|AFU93450.1| small nuclear ribonucleoprotein polypeptide G [Litopenaeus
vannamei]
Length = 77
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
+EG + GFD +MN+V++ E +S R +G ++++G +I +++ L+
Sbjct: 27 VEGTLRGFDPFMNLVVDDGVEVR-RSGDRVRVGFVVIRGSSIIMLEALD 74
>gi|189028850|sp|A1DM27.2|LSM6_NEOFI RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 80
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
N + G + D YMNI LE +EE+ + K R++ G ++G+N+ I
Sbjct: 29 NSGVVYRGELQSVDGYMNIALERSEEF-VDGKLRRSYGDAFIRGNNVLYIS 78
>gi|429859545|gb|ELA34324.1| u6 snrna-associated sm-like protein lsm6 [Colletotrichum
gloeosporioides Nara gc5]
Length = 83
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
N + +G + D YMNI LE EEY + R+A G ++G+N+ I
Sbjct: 31 NSGVVYKGELQSVDGYMNIALEKTEEY-VNGVKRRAYGDAFVRGNNVMYIS 80
>gi|336373399|gb|EGO01737.1| hypothetical protein SERLA73DRAFT_132214 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386230|gb|EGO27376.1| hypothetical protein SERLADRAFT_382079 [Serpula lacrymans var.
lacrymans S7.9]
Length = 80
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKAL 75
V P+N F+Q + +++ L +G ++ D YMN+ L + EE+ K+ AL
Sbjct: 4 VNPVNPK-PFMQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQ-DGKSNGAL 61
Query: 76 GTIMLKGDNITLIQNLNPD 94
G + ++ +N+ I+ P+
Sbjct: 62 GEVFIRCNNVLYIREAPPE 80
>gi|134126|sp|P24715.1|RUXG_MEDSA RecName: Full=Probable small nuclear ribonucleoprotein G;
Short=snRNP-G; AltName: Full=Sm protein G; Short=Sm-G;
Short=SmG
gi|19573|emb|CAA44975.1| snRNP-related protein [Medicago sativa]
Length = 81
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
Q+ + N I G + GFD++MN+V+++ E N + +G ++++G+++ ++ L
Sbjct: 17 QLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVN--GNEKNDIGMVVIRGNSVVTVEALE 74
Query: 93 P 93
P
Sbjct: 75 P 75
>gi|168067143|ref|XP_001785484.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662891|gb|EDQ49691.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 77
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNL 91
N + G + GFD++MN+VL++ E N R +G ++++G+++ +I+ L
Sbjct: 23 NAGRNVVGVLRGFDQFMNLVLDNTVEIN--GADRNEIGMVVIRGNSVVMIEAL 73
>gi|427782609|gb|JAA56756.1| Putative small nuclear ribonucleoprotein-associated protein b and
b' [Rhipicephalus pulchellus]
Length = 239
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 21/81 (25%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY-NIKSKT-- 71
M+Q IN R + SR+ I ++ FD++MN++L EE+ +K K+
Sbjct: 9 MLQHINYRMRVILQDSRIFIGTFKA-----------FDKHMNLILGDCEEFRKVKGKSQA 57
Query: 72 -------RKALGTIMLKGDNI 85
++ LG ++L+G+NI
Sbjct: 58 RHGDREEKRVLGLVLLRGENI 78
>gi|425770038|gb|EKV08513.1| hypothetical protein PDIP_68050 [Penicillium digitatum Pd1]
gi|425771729|gb|EKV10166.1| hypothetical protein PDIG_58570 [Penicillium digitatum PHI26]
Length = 80
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
N + +G + D YMNI LE EEY + K R+ G ++G+N+ I +
Sbjct: 29 NSGVVYKGELQSVDGYMNIALEKTEEY-VNGKLRRNYGDAFVRGNNVLYISS 79
>gi|294495046|ref|YP_003541539.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
gi|292666045|gb|ADE35894.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
Length = 72
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
G + G+D +MN+VL+ AEE RK +G+++++GDN+ +
Sbjct: 29 GTLQGYDVHMNLVLDEAEEIKEGEIIRK-IGSVVVRGDNVVYVS 71
>gi|254586103|ref|XP_002498619.1| ZYRO0G14696p [Zygosaccharomyces rouxii]
gi|238941513|emb|CAR29686.1| ZYRO0G14696p [Zygosaccharomyces rouxii]
Length = 86
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 34 IWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTR-----KALGTIMLKGDNITLI 88
+W+ N G ++GFD+++N+++E A+E + + + + G ++L G++I ++
Sbjct: 20 VWIVLQSNREFTGTLIGFDDFVNVIVEDAKEVTVGADLQDIPVMQHKGRMLLSGNSIAML 79
>gi|302666925|ref|XP_003025057.1| small nuclear ribonucleoprotein SmF, putative [Trichophyton
verrucosum HKI 0517]
gi|291189139|gb|EFE44446.1| small nuclear ribonucleoprotein SmF, putative [Trichophyton
verrucosum HKI 0517]
Length = 86
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 25 FLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDN 84
FL + + + N + +G + D YMNI LE EEY + K R++ G ++G+N
Sbjct: 15 FLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEY-VNGKMRRSYGDAFVRGNN 73
>gi|225680789|gb|EEH19073.1| conserved hypothetical protein [Paracoccidioides brasiliensis
Pb03]
gi|226292484|gb|EEH47904.1| LSM domain-containing protein [Paracoccidioides brasiliensis
Pb18]
Length = 94
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 25 FLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDN 84
FL + + + N + +G + D YMNI LE EEY + K R++ G ++G+N
Sbjct: 14 FLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEY-VDGKLRRSYGDAFVRGNN 72
>gi|66823569|ref|XP_645139.1| hypothetical protein DDB_G0272320 [Dictyostelium discoideum AX4]
gi|74857874|sp|Q55A45.1|RSMB_DICDI RecName: Full=Small nuclear ribonucleoprotein-associated protein
B; Short=snRNP-B; AltName: Full=Sm protein B;
Short=Sm-B; Short=SmB
gi|60473366|gb|EAL71312.1| hypothetical protein DDB_G0272320 [Dictyostelium discoideum AX4]
Length = 274
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 21/99 (21%)
Query: 9 PKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY-NI 67
PK K M+Q IN R RV I G L FD++MN+V+ AEE+ I
Sbjct: 5 PKSSK-MLQYINYRMRVTIQDGRV-----------IVGRFLAFDKHMNVVICDAEEFRRI 52
Query: 68 KSKT------RKALGTIMLKGDNIT--LIQNLNPDEVKV 98
+ K ++ LG I+++G+ + ++ P+E K+
Sbjct: 53 RQKGKEDREEKRTLGMILIRGETVVSMSVEAPPPEEAKL 91
>gi|237843565|ref|XP_002371080.1| small nuclear ribonucleoprotein F, putative [Toxoplasma gondii
ME49]
gi|211968744|gb|EEB03940.1| small nuclear ribonucleoprotein F, putative [Toxoplasma gondii
ME49]
gi|221504941|gb|EEE30606.1| small nuclear ribonucleoprotein F, putative [Toxoplasma gondii
VEG]
Length = 87
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK 73
V P+N FL + + Q+ + + +G++ FDEYMN+ L++ EE+ + +
Sbjct: 2 ATVTPVNPK-PFLTSLTGRQVMVKLKWGIEYKGYLKSFDEYMNLQLQNTEEW-VDGSFKG 59
Query: 74 ALGTIMLKGDNITLIQNLNPDE 95
LG ++L+ +N+ ++ + ++
Sbjct: 60 HLGEVLLRCNNVLYLRQVKGED 81
>gi|402217602|gb|EJT97682.1| small nuclear ribo protein F [Dacryopinax sp. DJM-731 SS1]
Length = 89
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKAL 75
V P+N F+Q+ + Q+ + +G+++ D +MN+ L + EE+ K+ AL
Sbjct: 8 VTPVNPK-PFIQDLTGKQVLVRLKWGFEYKGYLVSTDGFMNLQLANTEEFQ-DGKSNGAL 65
Query: 76 GTIMLKGDNITLIQNLNPDEVKV 98
G + ++ +N+ I+ +EV +
Sbjct: 66 GEVFIRCNNVLYIREAPAEEVAM 88
>gi|315046146|ref|XP_003172448.1| small nuclear ribonucleoprotein SmG [Arthroderma gypseum CBS
118893]
gi|327305055|ref|XP_003237219.1| small nuclear ribonucleoprotein SmG [Trichophyton rubrum CBS
118892]
gi|311342834|gb|EFR02037.1| small nuclear ribonucleoprotein SmG [Arthroderma gypseum CBS
118893]
gi|326460217|gb|EGD85670.1| small nuclear ribonucleoprotein SmG [Trichophyton rubrum CBS
118892]
gi|326472004|gb|EGD96013.1| small nuclear ribonucleoprotein SmG [Trichophyton tonsurans CBS
112818]
gi|326477131|gb|EGE01141.1| small nuclear ribonucleoprotein SmG [Trichophyton equinum CBS
127.97]
Length = 78
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 43/69 (62%), Gaps = 7/69 (10%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESA-EEYNIKSKTRKALGTIMLKG 82
++++ R VQ+ N N ++ G + G+D +MNIVL+ A EE N K LG ++++G
Sbjct: 10 KYMEKRLFVQL----NGNRKVIGVLRGYDVFMNIVLDDAVEEKNGGEKV--PLGMVVIRG 63
Query: 83 DNITLIQNL 91
+++ +++ L
Sbjct: 64 NSVVMLEAL 72
>gi|19113214|ref|NP_596422.1| U4/U6 x U5 tri-snRNP complex Sm snRNP core protein Smg1
[Schizosaccharomyces pombe 972h-]
gi|6094213|sp|O74966.1|RUXG_SCHPO RecName: Full=Small nuclear ribonucleoprotein G; Short=snRNP-G;
AltName: Full=Sm protein G; Short=Sm-G; Short=SmG
gi|3169092|emb|CAA19285.1| U4/U6 x U5 tri-snRNP complex Sm snRNP core protein Smg1
[Schizosaccharomyces pombe]
Length = 77
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
Q+++ N + ++ G + G+D ++NIVLE + E + + K +G++ ++G+++ +I+ L+
Sbjct: 16 QVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVK-IGSVAIRGNSVIMIETLD 74
>gi|337284247|ref|YP_004623721.1| small nuclear ribonucleoprotein [Pyrococcus yayanosii CH1]
gi|334900181|gb|AEH24449.1| small nuclear ribonucleoprotein [Pyrococcus yayanosii CH1]
Length = 82
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 3 GGFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESA 62
GG +MA + P+++I R L V + L + R G ++G+D ++N+VL A
Sbjct: 5 GGRRMAER-------PLDVIHRSLDKD--VLVILKKGFEFR--GKLIGYDIHLNVVLADA 53
Query: 63 EEYNIKSKTRKALGTIMLKGDNITLIQ 89
E + K G I+++GDN+ I
Sbjct: 54 EMIQ-DGEVVKKYGKIVIRGDNVLAIS 79
>gi|323449072|gb|EGB04963.1| hypothetical protein AURANDRAFT_9330 [Aureococcus
anophagefferens]
Length = 72
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ L+ + + +R IW+ + + G + GFDEY VL+ EY +KT+ L
Sbjct: 4 PLELVDKCIGSR----IWVIMKGDKEVVGTLRGFDEY---VLDDVTEYCDGAKTQ--LDQ 54
Query: 78 IMLKGDNITLI 88
I+L G+N++++
Sbjct: 55 ILLNGNNVSMM 65
>gi|161527857|ref|YP_001581683.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|160339158|gb|ABX12245.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
Length = 80
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 41 NLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
N ++G + FD +MN+ LE+AE+ + + +G ++L+GDNI I
Sbjct: 27 NKTVQGTLKDFDIHMNLTLENAED--VSEEKPNPIGKVLLRGDNILAIS 73
>gi|348673586|gb|EGZ13405.1| hypothetical protein PHYSODRAFT_316685 [Phytophthora sojae]
Length = 122
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSK--TRKALGTIMLKGDNITLIQNLNPDEVK 97
G++ FD+Y NI+LE E ++ LG +++GDNI L+ L+ D+ +
Sbjct: 31 GYLRSFDQYSNIILEDTYERHVAGGLFCDIELGLNIIRGDNIVLLGELDSDKER 84
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.139 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,363,976,383
Number of Sequences: 23463169
Number of extensions: 43252197
Number of successful extensions: 118940
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 767
Number of HSP's that attempted gapping in prelim test: 118120
Number of HSP's gapped (non-prelim): 1274
length of query: 98
length of database: 8,064,228,071
effective HSP length: 67
effective length of query: 31
effective length of database: 6,492,195,748
effective search space: 201258068188
effective search space used: 201258068188
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)