BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10748
(98 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VLV5|RUXE_DROME Probable small nuclear ribonucleoprotein E OS=Drosophila
melanogaster GN=SmE PE=3 SV=1
Length = 94
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 81/90 (90%)
Query: 4 GFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAE 63
FK PKVQKVMVQPINLIFR+LQNRSRVQ+WLYEN++LRIEGHI+GFDEYMN+VL+ AE
Sbjct: 2 SFKGNPKVQKVMVQPINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAE 61
Query: 64 EYNIKSKTRKALGTIMLKGDNITLIQNLNP 93
E +K++ R+ LG IMLKGDNITLIQN++P
Sbjct: 62 EVYVKTRQRRNLGRIMLKGDNITLIQNVSP 91
>sp|A1XQR9|RUXE_PIG Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3
SV=1
Length = 92
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 77/85 (90%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
A KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 AQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSVS 91
>sp|P62305|RUXE_MOUSE Small nuclear ribonucleoprotein E OS=Mus musculus GN=Snrpe PE=2
SV=1
Length = 92
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 76/85 (89%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSVS 91
>sp|P62304|RUXE_HUMAN Small nuclear ribonucleoprotein E OS=Homo sapiens GN=SNRPE PE=1
SV=1
Length = 92
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 76/85 (89%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSVS 91
>sp|P62303|RUXE_CHICK Small nuclear ribonucleoprotein E OS=Gallus gallus GN=SNRPE PE=3
SV=1
Length = 92
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 76/85 (89%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSVS 91
>sp|A4FUI2|RUXE_BOVIN Small nuclear ribonucleoprotein E OS=Bos taurus GN=SNRPE PE=3
SV=1
Length = 92
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 76/85 (89%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 GQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSVS 91
>sp|Q7ZUG0|RUXE_DANRE Small nuclear ribonucleoprotein E OS=Danio rerio GN=snrpe PE=3
SV=1
Length = 92
Score = 132 bits (332), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 61/83 (73%), Positives = 75/83 (90%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNRSR+ +WLYE VN+RIEG I+GFDEYMN+VL+ AEE ++K+
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
K RK LG IMLKGDNITL+Q+++
Sbjct: 69 KNRKPLGRIMLKGDNITLLQSVS 91
>sp|A8XDT0|RUXE_CAEBR Probable small nuclear ribonucleoprotein E OS=Caenorhabditis
briggsae GN=snr-6 PE=3 SV=1
Length = 90
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/80 (68%), Positives = 70/80 (87%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K+QKVMVQP+NLIFR+LQNR+RVQIWLYE+V R+EG+I+GFDE+MN+V + AEE N+K+
Sbjct: 5 KIQKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKT 64
Query: 70 KTRKALGTIMLKGDNITLIQ 89
K R +G I+LKGDNITLI
Sbjct: 65 KGRNKIGRILLKGDNITLIH 84
>sp|Q9XTU6|RUXE_CAEEL Probable small nuclear ribonucleoprotein E OS=Caenorhabditis
elegans GN=snr-6 PE=3 SV=1
Length = 90
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/80 (67%), Positives = 69/80 (86%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K+ KVMVQP+NLIFR+LQNR+RVQIWLYE+V R+EG+I+GFDE+MN+V + AEE N+K+
Sbjct: 5 KLNKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKT 64
Query: 70 KTRKALGTIMLKGDNITLIQ 89
K R +G I+LKGDNITLI
Sbjct: 65 KGRNKIGRILLKGDNITLIH 84
>sp|Q9USZ3|RUXE_SCHPO Small nuclear ribonucleoprotein E OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sme1 PE=1 SV=1
Length = 84
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 63/83 (75%), Gaps = 1/83 (1%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ +VQKVM+ PIN IF+ LQ + V IWL+E ++R++G I GFDE+MNIVL+ A + +
Sbjct: 1 MSGRVQKVMIPPINFIFKLLQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVD 60
Query: 67 IKSKTRKALGTIMLKGDNITLIQ 89
K+ R+ LG I+LKGDNITLIQ
Sbjct: 61 AKNNKRE-LGRILLKGDNITLIQ 82
>sp|Q12330|RUXE_YEAST Small nuclear ribonucleoprotein E OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SME1 PE=1 SV=1
Length = 94
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 63/94 (67%), Gaps = 8/94 (8%)
Query: 7 MAPKVQ-KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY 65
M+ KV+ K MV PIN IF FLQ ++ V IWL+E + +RI+G I+GFDE+MN+V++ A E
Sbjct: 1 MSNKVKTKAMVPPINCIFNFLQQQTPVTIWLFEQIGIRIKGKIVGFDEFMNVVIDEAVEI 60
Query: 66 NIKSKTRK-------ALGTIMLKGDNITLIQNLN 92
+ S K LG I+LKGDNITLI + +
Sbjct: 61 PVNSADGKEDVEKGTPLGKILLKGDNITLITSAD 94
>sp|Q5R628|LSM5_PONAB U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii GN=LSM5
PE=3 SV=3
Length = 91
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + SR+ I + + I G +LGFD+++N+VLE E+ I + R+ L
Sbjct: 14 PLELVDKCIG--SRIHIVMKSDK--EIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 70 DQILLNGNNITML 82
>sp|P62322|LSM5_MOUSE U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus GN=Lsm5
PE=3 SV=2
Length = 91
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + SR+ I + + I G +LGFD+++N+VLE E+ I + R+ L
Sbjct: 14 PLELVDKCIG--SRIHIVMKSDK--EIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 70 DQILLNGNNITML 82
>sp|Q9Y4Y9|LSM5_HUMAN U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens GN=LSM5
PE=1 SV=3
Length = 91
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + SR+ I + + I G +LGFD+++N+VLE E+ I + R+ L
Sbjct: 14 PLELVDKCIG--SRIHIVMKSDK--EIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 70 DQILLNGNNITML 82
>sp|Q2HJH0|LSM5_BOVIN U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus GN=LSM5
PE=3 SV=3
Length = 91
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK--AL 75
P+ L+ + + SR+ I + + I G +LGFD+++N+VLE E+ I + R+ L
Sbjct: 14 PLELVDKCIG--SRIHIVMKSDK--EIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 70 DQILLNGNNITML 82
>sp|O82221|RUXG_ARATH Probable small nuclear ribonucleoprotein G OS=Arabidopsis
thaliana GN=At2g23930 PE=2 SV=1
Length = 80
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
++QI L N N + G + GFD++MN+V+++ E N KT +G ++++G++I ++
Sbjct: 17 KLQIKL--NANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKT--DIGMVVIRGNSIVTVEA 72
Query: 91 LNP 93
L P
Sbjct: 73 LEP 75
>sp|Q54HH8|SMDL_DICDI Small nuclear ribonucleoprotein Sm D-like protein OS=Dictyostelium
discoideum GN=DDB_G0289453 PE=3 SV=1
Length = 257
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 48/88 (54%), Gaps = 17/88 (19%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLR--IEGHILGFDEYMNIVLESA-EEYN-------- 66
P++L+ R L+++S++++ + +R G+I+ FD++MNI+L EEY+
Sbjct: 166 PLSLLKRALESKSKIKVMIRGTNCIRGYCRGYIIAFDKHMNIILRDVEEEYDLLKSLPST 225
Query: 67 ------IKSKTRKALGTIMLKGDNITLI 88
I+ K ++ G + +KGD + +
Sbjct: 226 RNQNQPIQPKIKRYYGQLFIKGDTVVSV 253
>sp|Q0W8R9|RUXX_UNCMA Putative snRNP Sm-like protein OS=Uncultured methanogenic
archaeon RC-I GN=UNCMA_29510 PE=3 SV=1
Length = 72
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
G + G+D +MN+VL++AEE +RK LGTI+++GD + +
Sbjct: 29 GELQGYDMHMNLVLDNAEELKENEASRK-LGTIIVRGDTVVYVS 71
>sp|O26745|RUXX_METTH Putative snRNP Sm-like protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_649 PE=1 SV=1
Length = 81
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
G + FD +MN+VL AEE TR+ LGT++++GDNI I
Sbjct: 38 GVLKSFDLHMNLVLNDAEELEDGEVTRR-LGTVLIRGDNIVYIS 80
>sp|P0CR24|LSM6_CRYNJ U6 snRNA-associated Sm-like protein LSm6 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=LSM6 PE=3 SV=1
Length = 88
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
Q V P + + R +V+I + G + D YMN+ LE AEE+ + KT
Sbjct: 11 QPVSGSPSEFLRNIVGKRVKVRI----GSGVDYTGLLTCLDGYMNVALEQAEEWAGEVKT 66
Query: 72 RKALGTIMLKGDNITLIQNL 91
A G L+G+N+ I L
Sbjct: 67 -AAYGDCFLRGNNVLYISAL 85
>sp|P0CR25|LSM6_CRYNB U6 snRNA-associated Sm-like protein LSm6 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=LSM6 PE=3 SV=1
Length = 88
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
Q V P + + R +V+I + G + D YMN+ LE AEE+ + KT
Sbjct: 11 QPVSGSPSEFLRNIVGKRVKVRI----GSGVDYTGLLTCLDGYMNVALEQAEEWAGEVKT 66
Query: 72 RKALGTIMLKGDNITLIQNL 91
A G L+G+N+ I L
Sbjct: 67 -AAYGDCFLRGNNVLYISAL 85
>sp|Q1DRN0|LSM6_COCIM U6 snRNA-associated Sm-like protein LSm6 OS=Coccidioides immitis
(strain RS) GN=LSM6 PE=3 SV=1
Length = 80
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 25 FLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDN 84
FL + + + N + +G + D YMNI LE +E+ + K RK+ G + ++G+N
Sbjct: 15 FLSGITGASVTVKLNSGVVYKGELQSIDGYMNIALEKTQEF-VNGKLRKSYGDVFVRGNN 73
Query: 85 ITLIQ 89
+ I
Sbjct: 74 VLYIS 78
>sp|Q55EX5|LSM5_DICDI Probable U6 snRNA-associated Sm-like protein LSm5
OS=Dictyostelium discoideum GN=lsm5 PE=3 SV=1
Length = 97
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P+ LI + + +R IW+ + G +LGFD Y+NI L+ EY + K L
Sbjct: 18 PLELIEKCIGSR----IWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYTPEGLKTVKL 73
Query: 76 GTIMLKGDNITLI 88
I+L G+++ L+
Sbjct: 74 DNILLNGNHVCLL 86
>sp|A6R363|LSM6_AJECN U6 snRNA-associated Sm-like protein LSm6 OS=Ajellomyces capsulata
(strain NAm1 / WU24) GN=LSM6 PE=3 SV=1
Length = 80
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 25 FLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDN 84
FL + + + N + +G + D YMNI LE EEY + K R++ G ++G+N
Sbjct: 15 FLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEY-VDGKLRRSYGDAFVRGNN 73
Query: 85 ITLIQ 89
+ I
Sbjct: 74 VLYIS 78
>sp|P40089|LSM5_YEAST U6 snRNA-associated Sm-like protein LSm5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM5 PE=1
SV=1
Length = 93
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 7/55 (12%)
Query: 41 NLRIEGHILGFDEYMNIVLESAEEYNI----KSKTRKAL---GTIMLKGDNITLI 88
N EG ++GFD+++N++LE A E+ I +S+ K + G ++L G+NI ++
Sbjct: 27 NREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRMLLSGNNIAIL 81
>sp|Q9YEQ5|RUXX_AERPE Putative snRNP Sm-like protein OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_0525a PE=3 SV=1
Length = 77
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 15 MVQPINL-IFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK 73
M PI L R + + + + LRI+G + +D+++NI+L AEE S R
Sbjct: 1 MSGPITLPTLRMMLDYVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEEIGETSIRR- 59
Query: 74 ALGTIMLKGDNITLI 88
LG +++GD++ +I
Sbjct: 60 -LGLTLVRGDSVVVI 73
>sp|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprotein G OS=Drosophila
melanogaster GN=SmG PE=3 SV=1
Length = 76
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
+ G + GFD +MN+VL+ E K T+ +G ++++G++I +++ L+
Sbjct: 27 VTGILRGFDPFMNVVLDDTVE-ECKDNTKNNIGMVVIRGNSIVMVEALD 74
>sp|Q9N4G9|RUXG_CAEEL Probable small nuclear ribonucleoprotein G OS=Caenorhabditis
elegans GN=snr-7 PE=3 SV=1
Length = 77
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
N N R+ G + GFD +MN+V++ A EY K LG +++G+++ +++
Sbjct: 22 NGNRRVSGILRGFDPFMNMVIDEAVEYQ-KDGGSVNLGMTVIRGNSVVIME 71
>sp|O42978|LSM5_SCHPO U6 snRNA-associated Sm-like protein LSm5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm5 PE=1 SV=2
Length = 80
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKAL 75
+ P+ LI + + + +W+ G ++GFD+Y+NIVL+ EY+ + +
Sbjct: 5 ILPLELIDKCIGS----NLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKH 60
Query: 76 GTIMLKGDNITLI 88
++L G+ + ++
Sbjct: 61 SEMLLNGNGMCML 73
>sp|A1DM27|LSM6_NEOFI U6 snRNA-associated Sm-like protein LSm6 OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=lsm6 PE=3 SV=2
Length = 80
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
N + G + D YMNI LE +EE+ + K R++ G ++G+N+ I
Sbjct: 29 NSGVVYRGELQSVDGYMNIALERSEEF-VDGKLRRSYGDAFIRGNNVLYIS 78
>sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G OS=Medicago sativa
GN=C29 PE=3 SV=1
Length = 81
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
Q+ + N I G + GFD++MN+V+++ E N + +G ++++G+++ ++ L
Sbjct: 17 QLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVN--GNEKNDIGMVVIRGNSVVTVEALE 74
Query: 93 P 93
P
Sbjct: 75 P 75
>sp|Q55A45|RSMB_DICDI Small nuclear ribonucleoprotein-associated protein B
OS=Dictyostelium discoideum GN=snrpb PE=3 SV=1
Length = 274
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 21/99 (21%)
Query: 9 PKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY-NI 67
PK K M+Q IN R RV I G L FD++MN+V+ AEE+ I
Sbjct: 5 PKSSK-MLQYINYRMRVTIQDGRV-----------IVGRFLAFDKHMNVVICDAEEFRRI 52
Query: 68 KSKT------RKALGTIMLKGDNIT--LIQNLNPDEVKV 98
+ K ++ LG I+++G+ + ++ P+E K+
Sbjct: 53 RQKGKEDREEKRTLGMILIRGETVVSMSVEAPPPEEAKL 91
>sp|O74966|RUXG_SCHPO Small nuclear ribonucleoprotein G OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=smg1 PE=1 SV=1
Length = 77
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
Q+++ N + ++ G + G+D ++NIVLE + E + + K +G++ ++G+++ +I+ L+
Sbjct: 16 QVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVK-IGSVAIRGNSVIMIETLD 74
>sp|B6YUU5|RUXX_THEON Putative snRNP Sm-like protein OS=Thermococcus onnurineus (strain
NA1) GN=TON_0644 PE=3 SV=1
Length = 78
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 17 QPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALG 76
+P+++I R L V + L + R G ++G+D ++NIVL AE + K G
Sbjct: 4 RPLDVIHRSLDKD--VLVILKKGFEFR--GKLIGYDIHLNIVLAGAEMIQ-DGEVVKKYG 58
Query: 77 TIMLKGDNITLIQNLN 92
I+++GDN+ I ++
Sbjct: 59 KIVIRGDNVLAISPVD 74
>sp|Q2HAN0|LSM6_CHAGB U6 snRNA-associated Sm-like protein LSm6 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=LSM6 PE=3 SV=2
Length = 82
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
N + +G + D YMNI LE EEY + R++ G ++G+N+ I
Sbjct: 31 NSGVVYKGELQSVDGYMNIALEKTEEY-VNGAKRRSYGDAFVRGNNVMYIS 80
>sp|C5A1H1|RUXX_THEGJ Putative snRNP Sm-like protein OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=TGAM_1738 PE=3
SV=1
Length = 76
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 17 QPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALG 76
+P+++I R L V + L R G ++G+D ++N+VL A +Y + K+ G
Sbjct: 4 RPLDVIHRSLDKD--VLVLLKRGGEFR--GKLIGYDIHLNVVLAGA-DYIQDGEVVKSYG 58
Query: 77 TIMLKGDNITLIQNLN 92
I+++GDN+ I ++
Sbjct: 59 KIVVRGDNVLAISPVD 74
>sp|A4RQ29|LSM6_MAGO7 U6 snRNA-associated Sm-like protein LSm6 OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=LSM6 PE=3
SV=1
Length = 83
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P + + + N V++ N + +G + D YMNI LE AEE+ + + +++ G
Sbjct: 14 PTSFLGEIIGNMVTVKL----NSGVIYKGELQSVDGYMNIALEKAEEW-VAGQKKRSYGD 68
Query: 78 IMLKGDNITLI 88
++G+N+ I
Sbjct: 69 AFVRGNNVMYI 79
>sp|Q12U30|RUXX_METBU Putative snRNP Sm-like protein OS=Methanococcoides burtonii
(strain DSM 6242) GN=Mbur_2181 PE=3 SV=1
Length = 72
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
G + G+D +MN+VL+ AEE RK +G ++++GDN+ +
Sbjct: 29 GVLQGYDVHMNLVLDEAEELKDGEIVRK-IGGVVIRGDNVVYVS 71
>sp|Q465S1|RUXX_METBF Putative snRNP Sm-like protein OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3500 PE=3 SV=1
Length = 72
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
G + G+D +MN+VL++AEE + + G+++++GDN+ +
Sbjct: 29 GELKGYDIHMNLVLDNAEELR-EGEVVSKFGSVVIRGDNVVYVS 71
>sp|O74016|RUXX_PYRHO Putative snRNP Sm-like protein OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 /
OT-3) GN=PH1518.2 PE=3 SV=1
Length = 75
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 17 QPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALG 76
+P+++I R L V + L + R G ++G+D ++N+VL AE + K G
Sbjct: 4 RPLDVIHRSLDKD--VLVILKKGFEFR--GRLIGYDIHLNVVLADAEMVQ-DGEVVKKYG 58
Query: 77 TIMLKGDNITLIQ 89
I+++GDN+ I
Sbjct: 59 KIVIRGDNVLAIS 71
>sp|Q4WNI0|LSM6_ASPFU U6 snRNA-associated Sm-like protein LSm6 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC
A1100) GN=lsm6 PE=3 SV=2
Length = 80
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
N + +G + D YMNI LE +EE+ + K +++ G ++G+N+ I
Sbjct: 29 NSGVVYKGELQSVDGYMNIALERSEEF-VDGKLKRSYGDAFIRGNNVLYIS 78
>sp|Q54W83|LSM1_DICDI Probable U6 snRNA-associated Sm-like protein LSm1
OS=Dictyostelium discoideum GN=lsm1 PE=3 SV=1
Length = 129
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 51 FDEYMNIVLESAEE--YNIKSKTRKALGTIMLKGDNITLIQNLNPDE 95
FD++ NIVL+ E Y + K LG ++GDN+ ++ ++PD+
Sbjct: 30 FDQFANIVLQDTIERIYVGDCYSDKNLGLFFIRGDNVVILGEIDPDK 76
>sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0360 PE=3 SV=2
Length = 83
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 41 NLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
N G + G+D YMN+VL++A E I + + I+++GDN+ +
Sbjct: 29 NREYSGILEGYDVYMNVVLQNASEI-INGENKGVFDRILVRGDNVIFVS 76
>sp|Q05856|RSMB_DROME Small nuclear ribonucleoprotein-associated protein B
OS=Drosophila melanogaster GN=SmB PE=1 SV=1
Length = 199
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 20/80 (25%)
Query: 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY-NIKSKT-- 71
M+Q +N R + SR I ++ FD++MN++L EE+ I+SK
Sbjct: 9 MIQHLNYRVRIVLQDSRTFIGTFKA-----------FDKHMNLILGDCEEFRKIRSKNSK 57
Query: 72 ------RKALGTIMLKGDNI 85
++ LG ++L+G+NI
Sbjct: 58 VPEREEKRVLGFVLLRGENI 77
>sp|Q9V0Y8|RUXX_PYRAB Putative snRNP Sm-like protein OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB06500 PE=1 SV=1
Length = 75
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 17 QPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALG 76
+P+++I R L V + L + R G ++G+D ++N+VL AE + K G
Sbjct: 4 RPLDVIHRSLDKD--VLVILKKGFEFR--GRLIGYDIHLNVVLADAEMIQ-DGEVVKRYG 58
Query: 77 TIMLKGDNITLIQ 89
I+++GDN+ I
Sbjct: 59 KIVIRGDNVLAIS 71
>sp|Q9P5Z8|RUXF_NEUCR Probable small nuclear ribonucleoprotein F OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=B2O8.190 PE=3 SV=1
Length = 90
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 46 GHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNPDEV 96
G ++ D YMNI L +EY I K ALG ++++ +N+ I+ + E
Sbjct: 33 GRLVSIDSYMNIQLSDTKEY-INRKFTGALGQVLIRCNNVLYIKKADEAET 82
>sp|Q10163|RSMB_SCHPO Small nuclear ribonucleoprotein-associated protein B
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=smb1 PE=1 SV=1
Length = 147
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 10/61 (16%)
Query: 46 GHILGFDEYMNIVLESAEEY------NIKSKT----RKALGTIMLKGDNITLIQNLNPDE 95
G +L FD +MN+VL +EY N+ S + ++ LG ++L+G+ I + P
Sbjct: 26 GQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRMLGLVILRGEFIVSLSVQGPPP 85
Query: 96 V 96
+
Sbjct: 86 M 86
>sp|A7F5M4|LSM6_SCLS1 U6 snRNA-associated Sm-like protein LSm6 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=lsm6
PE=3 SV=2
Length = 85
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 30 SRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
SRV + L N +L +G + D YMNI LE EE+ + K + G ++G+N+ I
Sbjct: 24 SRVIVKL--NNSLVFKGELQSVDGYMNIALEKCEEW-VHGKKKTVHGDAFVRGNNVMYIS 80
>sp|A5DRQ6|LSM6_LODEL U6 snRNA-associated Sm-like protein LSm6 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=LSM6 PE=3 SV=2
Length = 80
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 30 SRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
S V++ L+ V +G + D YMN+ LE+ +E I +K K G + L+G+N+ I
Sbjct: 22 SSVKVKLHNGV--EYQGDLQTIDGYMNVALENGKEV-IDNKVTKHYGDVFLRGNNVLYIS 78
>sp|P57670|RUXX_THEAC Putative snRNP Sm-like protein OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1240 PE=3 SV=1
Length = 83
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 41 NLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
N G + G+D YMNIVL++A E I + + ++++GDN+ +
Sbjct: 29 NREYSGILEGYDVYMNIVLQNASEI-INGENKGVYDRVLVRGDNVIFVS 76
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,706,060
Number of Sequences: 539616
Number of extensions: 1053202
Number of successful extensions: 2899
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 141
Number of HSP's that attempted gapping in prelim test: 2866
Number of HSP's gapped (non-prelim): 167
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)