Query psy10748
Match_columns 98
No_of_seqs 110 out of 1084
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 17:31:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s6n_E Small nuclear ribonucle 100.0 1.2E-29 4E-34 165.3 8.3 83 10-92 9-91 (92)
2 4emk_A U6 snRNA-associated SM- 99.9 1.9E-25 6.5E-30 146.0 10.4 78 12-93 15-92 (94)
3 1i8f_A Putative snRNP SM-like 99.9 2.2E-25 7.5E-30 141.3 9.1 81 7-93 1-81 (81)
4 1ljo_A Archaeal SM-like protei 99.9 8.7E-25 3E-29 137.1 9.6 75 14-93 2-77 (77)
5 3bw1_A SMX4 protein, U6 snRNA- 99.9 1.5E-24 5.1E-29 141.7 9.0 82 12-97 5-92 (96)
6 1i4k_A Putative snRNP SM-like 99.9 2.7E-24 9.1E-29 134.7 9.6 75 16-95 3-77 (77)
7 3s6n_F Small nuclear ribonucle 99.9 1.1E-23 3.6E-28 135.3 10.3 77 15-96 4-80 (86)
8 1h64_1 SnRNP SM-like protein; 99.9 9E-24 3.1E-28 131.8 9.6 73 16-93 3-75 (75)
9 2fwk_A U6 snRNA-associated SM- 99.9 1.9E-24 6.5E-29 146.3 6.8 81 11-95 22-116 (121)
10 4emk_B U6 snRNA-associated SM- 99.9 6.9E-24 2.4E-28 132.6 7.8 73 16-93 3-75 (75)
11 1th7_A SnRNP-2, small nuclear 99.9 1.5E-23 5.2E-28 132.7 8.9 74 15-93 7-80 (81)
12 1d3b_A Protein (small nuclear 99.9 2.3E-23 7.9E-28 130.6 9.5 72 16-92 4-75 (75)
13 1mgq_A SM-like protein; LSM, R 99.9 2.2E-23 7.7E-28 132.6 9.2 75 11-90 9-83 (83)
14 4emk_C U6 snRNA-associated SM- 99.9 5.8E-23 2E-27 138.0 8.8 77 16-96 22-104 (113)
15 1n9r_A SMF, small nuclear ribo 99.9 6.2E-23 2.1E-27 133.6 8.5 77 12-93 16-93 (93)
16 4emg_A Probable U6 snRNA-assoc 99.9 1E-22 3.5E-27 132.4 9.3 74 14-91 6-91 (93)
17 4emh_A Probable U6 snRNA-assoc 99.9 7.4E-23 2.5E-27 136.0 8.3 81 11-95 10-90 (105)
18 3s6n_G Small nuclear ribonucle 99.9 1.1E-22 3.7E-27 127.6 7.9 72 17-93 4-75 (76)
19 1b34_B Protein (small nuclear 99.9 3.5E-22 1.2E-26 134.6 9.6 79 14-96 24-117 (118)
20 1b34_A Protein (small nuclear 99.9 3.5E-22 1.2E-26 135.0 9.0 74 17-95 2-75 (119)
21 1d3b_B Protein (small nuclear 99.9 3.2E-22 1.1E-26 128.8 6.6 75 17-95 4-87 (91)
22 2y9a_D Small nuclear ribonucle 99.8 3.2E-21 1.1E-25 131.7 8.9 75 16-95 4-78 (126)
23 3pgw_B SM B; protein-RNA compl 99.8 7.6E-20 2.6E-24 135.5 10.3 74 16-93 3-85 (231)
24 1m5q_A SMAP3, small nuclear ri 99.8 1.1E-18 3.6E-23 119.7 7.5 66 20-94 3-68 (130)
25 1y96_A Gemin6, SIP2, GEM-assoc 98.4 1.7E-06 5.9E-11 55.3 7.6 67 17-95 8-75 (86)
26 1u1s_A HFQ protein; SM-like ba 97.6 0.00016 5.5E-09 45.7 5.5 39 20-61 10-48 (82)
27 2y90_A Protein HFQ; RNA-bindin 97.4 0.00026 8.8E-09 46.6 5.5 39 20-61 12-50 (104)
28 3sb2_A Protein HFQ; SM-like, R 97.4 0.00032 1.1E-08 44.0 5.5 58 20-93 11-68 (79)
29 3ahu_A Protein HFQ; SM-like mo 97.4 0.00023 7.9E-09 44.6 4.8 38 20-60 14-51 (78)
30 2ylb_A Protein HFQ; RNA-bindin 97.4 0.00026 8.7E-09 43.9 4.8 59 20-94 12-70 (74)
31 1kq1_A HFQ, HOST factor for Q 97.4 0.0003 1E-08 43.9 4.9 38 20-60 10-47 (77)
32 2qtx_A Uncharacterized protein 97.3 0.00028 9.5E-09 43.5 3.9 37 21-60 17-53 (71)
33 3hfn_A ASL2047 protein; HFQ, S 95.7 0.15 5E-06 31.3 8.7 60 17-90 10-70 (72)
34 1ycy_A Conserved hypothetical 95.4 0.048 1.6E-06 33.0 5.6 62 20-91 9-70 (71)
35 2vxe_A CG10686-PA; EDC3, CAR-1 95.3 0.19 6.4E-06 31.9 8.4 68 24-95 10-86 (88)
36 3hfo_A SSR3341 protein; HFQ, S 95.0 0.055 1.9E-06 33.0 5.1 43 16-61 7-50 (70)
37 2fb7_A SM-like protein, LSM-14 93.5 0.18 6.2E-06 32.4 5.3 71 18-92 10-89 (95)
38 2vc8_A Enhancer of mRNA-decapp 86.8 2.2 7.4E-05 26.8 5.7 62 24-93 6-69 (84)
39 4a53_A EDC3; RNA binding prote 84.0 4.3 0.00015 27.1 6.5 55 22-92 7-63 (125)
40 1y96_B Gemin7, SIP3, GEM-assoc 80.6 8.3 0.00028 24.1 6.9 62 19-90 21-83 (85)
41 1ib8_A Conserved protein SP14. 76.5 3.1 0.00011 28.5 4.0 36 20-60 97-136 (164)
42 3rux_A BIRA bifunctional prote 64.4 9.6 0.00033 27.7 4.6 26 37-62 230-255 (270)
43 2xk0_A Polycomb protein PCL; t 64.2 21 0.00071 21.4 5.2 34 34-67 22-56 (69)
44 1bia_A BIRA bifunctional prote 54.2 23 0.0008 26.0 5.2 39 39-82 280-318 (321)
45 3rkx_A Biotin-[acetyl-COA-carb 44.2 27 0.00091 26.0 4.2 23 39-61 286-308 (323)
46 2eay_A Biotin [acetyl-COA-carb 42.7 50 0.0017 23.2 5.3 38 39-82 195-232 (233)
47 2rm4_A CG6311-PB, DM EDC3; enh 42.5 65 0.0022 20.6 7.9 63 24-95 9-74 (103)
48 4hcz_A PHD finger protein 1; p 35.5 50 0.0017 19.1 3.5 33 34-66 10-45 (58)
49 2e12_A SM-like motif, hypothet 32.3 74 0.0025 20.1 4.2 29 19-49 18-46 (101)
50 3by7_A Uncharacterized protein 31.8 99 0.0034 19.6 7.3 55 36-92 8-76 (100)
51 1x4r_A PARP14 protein; WWE dom 31.7 2.2 7.4E-05 27.5 -3.1 18 46-63 35-52 (99)
52 2qqr_A JMJC domain-containing 31.6 51 0.0017 21.5 3.5 24 26-53 8-31 (118)
53 1ky9_A Protease DO, DEGP, HTRA 29.2 83 0.0028 24.2 4.9 29 34-62 113-141 (448)
54 4a8c_A Periplasmic PH-dependen 27.1 89 0.0031 23.8 4.7 28 35-62 91-118 (436)
55 2ej9_A Putative biotin ligase; 24.9 91 0.0031 21.9 4.1 31 26-61 191-221 (237)
56 2eqj_A Metal-response element- 24.9 94 0.0032 18.3 3.5 20 35-54 21-40 (66)
57 3stj_A Protease DEGQ; serine p 22.6 1.2E+02 0.0042 22.3 4.7 28 34-61 90-117 (345)
58 2dxu_A Biotin--[acetyl-COA-car 22.3 64 0.0022 22.7 2.9 18 44-61 200-217 (235)
59 2qs8_A XAA-Pro dipeptidase; am 20.4 1.3E+02 0.0043 21.8 4.3 42 50-91 2-43 (418)
60 3pv2_A DEGQ; trypsin fold, PDZ 20.3 1.1E+02 0.0038 23.5 4.1 29 34-62 104-132 (451)
No 1
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.96 E-value=1.2e-29 Score=165.32 Aligned_cols=83 Identities=75% Similarity=1.201 Sum_probs=73.8
Q ss_pred cceeeeeCcHHHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEeceEEEEecCceeeeeCeEEEeCCcEEEEE
Q psy10748 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89 (98)
Q Consensus 10 ~~~~~~~~Pl~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~~~~~~~lg~vliRG~~I~~I~ 89 (98)
++|+.|.+|+++|.+|++++++|++|+++++|++|+|+|.|||+|||++|+||+|+..++++.+++|.++|||+||++|+
T Consensus 9 ~~~~~m~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~iRG~nV~~i~ 88 (92)
T 3s6n_E 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQ 88 (92)
T ss_dssp -----CCCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSCCEEEEEEEEECGGGEEEEE
T ss_pred ccceeccCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCCceeEcCeEEEeCCEEEEEE
Confidence 88999999999999999999999999999999999999999999999999999999866667889999999999999999
Q ss_pred ecC
Q psy10748 90 NLN 92 (98)
Q Consensus 90 ~~~ 92 (98)
+++
T Consensus 89 ~~~ 91 (92)
T 3s6n_E 89 SVS 91 (92)
T ss_dssp EC-
T ss_pred eCC
Confidence 876
No 2
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.93 E-value=1.9e-25 Score=145.98 Aligned_cols=78 Identities=22% Similarity=0.538 Sum_probs=66.8
Q ss_pred eeeeeCcHHHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEeceEEEEecCceeeeeCeEEEeCCcEEEEEec
Q psy10748 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNL 91 (98)
Q Consensus 12 ~~~~~~Pl~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~~~~~~~lg~vliRG~~I~~I~~~ 91 (98)
+..+.+|+++|.++++++ |+|++++|++|+|+|+|||+||||+|+||+|+..++++.+.+|.++|||+||++|.+.
T Consensus 15 ~~~~~~Pl~lL~~~l~k~----V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~IRG~nI~~i~p~ 90 (94)
T 4emk_A 15 MSMTILPLELIDKCIGSN----LWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCMLIPG 90 (94)
T ss_dssp -----CHHHHHHHTTTSE----EEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTCCEEEEEEEEECSTTEEEEEEC
T ss_pred ccccccCHHHHHHHcCCe----EEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCCcEeEcCEEEEcCCEEEEEEeC
Confidence 567889999999999998 4668999999999999999999999999999985566788999999999999999987
Q ss_pred CC
Q psy10748 92 NP 93 (98)
Q Consensus 92 ~~ 93 (98)
.+
T Consensus 91 ~~ 92 (94)
T 4emk_A 91 GK 92 (94)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 3
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.92 E-value=2.2e-25 Score=141.29 Aligned_cols=81 Identities=22% Similarity=0.312 Sum_probs=65.9
Q ss_pred CcccceeeeeCcHHHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEeceEEEEecCceeeeeCeEEEeCCcEE
Q psy10748 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNIT 86 (98)
Q Consensus 7 ~~~~~~~~~~~Pl~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~~~~~~~lg~vliRG~~I~ 86 (98)
|+.+.|+.+..|+.+|.++++++++ +++++|++|+|+|.|||+|||++|+||+|+ ++...+.+|.++|||+||+
T Consensus 1 m~~~~~~~~~~P~~~L~~~~~~~V~----V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~--~~~~~~~lg~v~iRG~~I~ 74 (81)
T 1i8f_A 1 MASDISKCFATLGATLQDSIGKQVL----VKLRDSHEIRGILRSFDQHVNLLLEDAEEI--IDGNVYKRGTMVVRGENVL 74 (81)
T ss_dssp ---------CCHHHHHHTTTTSEEE----EEEGGGEEEEEEEEEECTTCCEEEEEEEEE--ETTEEEEEEEEEECGGGEE
T ss_pred CCcccCccccchHHHHHHHCCCeEE----EEEcCCcEEEEEEEEEcCCCeeEEccEEEE--cCCcccCCCEEEECCCEEE
Confidence 5667889999999999999999843 468999999999999999999999999998 4667899999999999999
Q ss_pred EEEecCC
Q psy10748 87 LIQNLNP 93 (98)
Q Consensus 87 ~I~~~~~ 93 (98)
+|.++|.
T Consensus 75 ~i~~~dg 81 (81)
T 1i8f_A 75 FISPVPG 81 (81)
T ss_dssp EEEECC-
T ss_pred EEEeCCC
Confidence 9999873
No 4
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.92 E-value=8.7e-25 Score=137.14 Aligned_cols=75 Identities=29% Similarity=0.490 Sum_probs=66.9
Q ss_pred eeeCcHHHHHHHhcCcceEEEEEEecCC-eEEEEEEEEEcccCCeEEeceEEEEecCceeeeeCeEEEeCCcEEEEEecC
Q psy10748 14 VMVQPINLIFRFLQNRSRVQIWLYENVN-LRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92 (98)
Q Consensus 14 ~~~~Pl~~L~~~i~k~vrV~V~v~l~~g-~~i~G~L~gfD~~mNlvL~d~~e~~~~~~~~~~lg~vliRG~~I~~I~~~~ 92 (98)
.|..|+.+|.++++++++ +++++| ++|+|+|.|||+|||++|+||+|++ +++..+.+|.++|||+||++|.++|
T Consensus 2 ~m~~P~~~L~~~~~~~v~----V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~-~~~~~~~lg~v~iRG~nI~~i~~~d 76 (77)
T 1ljo_A 2 AMVLPNQMVKSMVGKIIR----VEMKGEENQLVGKLEGVDDYMNLYLTNAMECK-GEEKVRSLGEIVLRGNNVVLIQPQE 76 (77)
T ss_dssp CCCCHHHHHHHTTTSEEE----EEETTCSSEEEEEEEEECTTCCEEEEEEEEEE-TTEEEEEEEEEEECGGGEEEEEEC-
T ss_pred CccchHHHHHHHCCCEEE----EEEeCCCEEEEEEEEEECCcceEEEeeEEEEe-cCCcEeECCeEEEeCCeEEEEEeCC
Confidence 367999999999999944 367999 9999999999999999999999997 5667889999999999999999987
Q ss_pred C
Q psy10748 93 P 93 (98)
Q Consensus 93 ~ 93 (98)
.
T Consensus 77 e 77 (77)
T 1ljo_A 77 E 77 (77)
T ss_dssp -
T ss_pred C
Confidence 3
No 5
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.5e-24 Score=141.68 Aligned_cols=82 Identities=26% Similarity=0.363 Sum_probs=68.8
Q ss_pred eeeeeCcHHHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEeceEEEEec------CceeeeeCeEEEeCCcE
Q psy10748 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIK------SKTRKALGTIMLKGDNI 85 (98)
Q Consensus 12 ~~~~~~Pl~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~------~~~~~~lg~vliRG~~I 85 (98)
..-|+.|+.+|.++++++++ |++++|++|+|+|+|||+||||+|+||+|++.+ ....+.+|.++|||+||
T Consensus 5 ~~~~~~p~~~L~~~i~k~V~----V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nV 80 (96)
T 3bw1_A 5 HHHMETPLDLLKLNLDERVY----IKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTV 80 (96)
T ss_dssp -CCCCCHHHHHGGGTTSEEE----EEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGE
T ss_pred chhhhhHHHHHHHHCCCeEE----EEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEE
Confidence 35689999999999999944 478999999999999999999999999999864 24578899999999999
Q ss_pred EEEEecCCCccc
Q psy10748 86 TLIQNLNPDEVK 97 (98)
Q Consensus 86 ~~I~~~~~~~~~ 97 (98)
++|.+++..++.
T Consensus 81 v~I~~~d~~~d~ 92 (96)
T 3bw1_A 81 TLISTPSEDDDG 92 (96)
T ss_dssp EEEECCC-----
T ss_pred EEEEecCccccc
Confidence 999999887653
No 6
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.91 E-value=2.7e-24 Score=134.67 Aligned_cols=75 Identities=23% Similarity=0.431 Sum_probs=66.1
Q ss_pred eCcHHHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEeceEEEEecCceeeeeCeEEEeCCcEEEEEecCCCc
Q psy10748 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNPDE 95 (98)
Q Consensus 16 ~~Pl~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~~~~~~~lg~vliRG~~I~~I~~~~~~~ 95 (98)
..|+.+|.++++++++ +++++|++|+|+|.|||+|||++|+||+|++ .+...+.+|.++|||+||++|.++|..|
T Consensus 3 ~~P~~~L~~~~~~~V~----V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~-~~~~~~~lg~v~iRG~~I~~i~~~d~~~ 77 (77)
T 1i4k_A 3 PRPLDVLNRSLKSPVI----VRLKGGREFRGTLDGYDIHMNLVLLDAEEIQ-NGEVVRKVGSVVIRGDTVVFVSPAPGGE 77 (77)
T ss_dssp CCHHHHHHTTTTSEEE----EEETTSCEEEEEEEEECTTCCEEEEEEEEEE-TTEEEEEEEEEEECGGGEEEEEECC---
T ss_pred ccHHHHHHHhCCCEEE----EEEcCCCEEEEEEEEEcCCCCeEEeeEEEEe-cCCcEeECCEEEECCCEEEEEEeCCCCC
Confidence 4799999999999943 4789999999999999999999999999997 4567889999999999999999999875
No 7
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.90 E-value=1.1e-23 Score=135.29 Aligned_cols=77 Identities=19% Similarity=0.380 Sum_probs=66.5
Q ss_pred eeCcHHHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEeceEEEEecCceeeeeCeEEEeCCcEEEEEecCCC
Q psy10748 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNPD 94 (98)
Q Consensus 15 ~~~Pl~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~~~~~~~lg~vliRG~~I~~I~~~~~~ 94 (98)
...|+.+|.+++++++ .+++++|++|+|+|.|||+|||++|+||+|+. +++..+.++.++|||+||++|.++|..
T Consensus 4 ~~~P~~~L~~~~~k~V----~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~-~g~~~~~lg~v~IRG~nI~~i~~~d~~ 78 (86)
T 3s6n_F 4 PLNPKPFLNGLTGKPV----MVKLKWGMEYKGYLVSVDGYMNMQLANTEEYI-DGALSGHLGEVLIRCNNVLYIRGVEEE 78 (86)
T ss_dssp CCCHHHHHHHHTTSEE----EEEETTSCEEEEEEEEECTTCCEEEEEEEEEE-TTEEEEEESSEEECGGGEEEEEECC--
T ss_pred CcCcHHHHHHhCCCeE----EEEEcCCeEEEEEEEEEcCceEEEEeeEEEEc-CCceeeEccEEEEeCCeEEEEEeCCcc
Confidence 3579999999999994 44789999999999999999999999999986 566778999999999999999999876
Q ss_pred cc
Q psy10748 95 EV 96 (98)
Q Consensus 95 ~~ 96 (98)
+.
T Consensus 79 ~~ 80 (86)
T 3s6n_F 79 EE 80 (86)
T ss_dssp --
T ss_pred cc
Confidence 53
No 8
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.90 E-value=9e-24 Score=131.79 Aligned_cols=73 Identities=26% Similarity=0.501 Sum_probs=65.1
Q ss_pred eCcHHHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEeceEEEEecCceeeeeCeEEEeCCcEEEEEecCC
Q psy10748 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNP 93 (98)
Q Consensus 16 ~~Pl~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~~~~~~~lg~vliRG~~I~~I~~~~~ 93 (98)
..|+.+|.+++++++ .+++++|++|+|+|.|||+|||++|+||+|++ .+...+.+|.++|||+||++|.+++.
T Consensus 3 ~~P~~~L~~~~~~~V----~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~-~~~~~~~lg~v~iRG~~I~~i~~~~e 75 (75)
T 1h64_1 3 ERPLDVIHRSLDKDV----LVILKKGFEFRGRLIGYDIHLNVVLADAEMIQ-DGEVVKRYGKIVIRGDNVLAISPTEE 75 (75)
T ss_dssp CCHHHHHHTTTTSEE----EEEETTSEEEEEEEEEECTTCCEEEEEEEEEE-TTEEEEEEEEEEECGGGEEEEEEC--
T ss_pred chHHHHHHHHCCCEE----EEEECCCCEEEEEEEEEeCCCCeEEeeEEEEe-eCCceeECCEEEECCCEEEEEEeCCC
Confidence 479999999999994 34789999999999999999999999999997 45678899999999999999999863
No 9
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.90 E-value=1.9e-24 Score=146.35 Aligned_cols=81 Identities=30% Similarity=0.540 Sum_probs=68.3
Q ss_pred ceeeeeCcHHHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEeceEEEEec---------Cce-----eeeeC
Q psy10748 11 VQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIK---------SKT-----RKALG 76 (98)
Q Consensus 11 ~~~~~~~Pl~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~---------~~~-----~~~lg 76 (98)
.+..+..|+++|.+++++++ +|++++|++|+|+|+|||+||||+|+||+|++.+ ++. .+.+|
T Consensus 22 ~~~~~~~Pl~lL~~~l~k~V----~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG 97 (121)
T 2fwk_A 22 KGGNIILPLALIDKCIGNRI----YVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLE 97 (121)
T ss_dssp --CCCCCHHHHHHHTBTSBC----EEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCS
T ss_pred ccccccCcHHHHHHHcCCeE----EEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcc
Confidence 45688999999999999994 4578999999999999999999999999999843 223 68899
Q ss_pred eEEEeCCcEEEEEecCCCc
Q psy10748 77 TIMLKGDNITLIQNLNPDE 95 (98)
Q Consensus 77 ~vliRG~~I~~I~~~~~~~ 95 (98)
.++|||++|++|.+.++-+
T Consensus 98 ~v~IRG~nVv~I~~~~~~~ 116 (121)
T 2fwk_A 98 TILLSGNNVAMLVPGGDPD 116 (121)
T ss_dssp EEEECGGGEEEEESSSCC-
T ss_pred eEEECCCEEEEEEecCCCC
Confidence 9999999999999987654
No 10
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.90 E-value=6.9e-24 Score=132.65 Aligned_cols=73 Identities=22% Similarity=0.472 Sum_probs=65.1
Q ss_pred eCcHHHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEeceEEEEecCceeeeeCeEEEeCCcEEEEEecCC
Q psy10748 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNP 93 (98)
Q Consensus 16 ~~Pl~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~~~~~~~lg~vliRG~~I~~I~~~~~ 93 (98)
..|+.+|.+++++++ .+++++|++|+|+|.|||+|||++|+||+|+. +++..+++|.++|||+||++|.+.|+
T Consensus 3 ~~P~~~L~~~~~k~V----~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~-~~~~~~~lg~v~iRG~~I~~i~~~~~ 75 (75)
T 4emk_B 3 SSPNEFLNKVIGKKV----LIRLSSGVDYKGILSCLDGYMNLALERTEEYV-NGKKTNVYGDAFIRGNNVLYVSALDD 75 (75)
T ss_dssp SHHHHHHHHTTTSEE----EEECTTSCEEEEEEEEECTTCEEEEEEEEEEE-TTEEEEEEEEEEEEGGGSSEEEEC--
T ss_pred CchHHHHHHhCCCeE----EEEEcCCcEEEEEEEEEcCcceEEEccEEEEe-cCCcccEecEEEEcCCeEEEEEecCC
Confidence 479999999999994 44789999999999999999999999999986 56678899999999999999999864
No 11
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.90 E-value=1.5e-23 Score=132.67 Aligned_cols=74 Identities=30% Similarity=0.445 Sum_probs=65.5
Q ss_pred eeCcHHHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEeceEEEEecCceeeeeCeEEEeCCcEEEEEecCC
Q psy10748 15 MVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNP 93 (98)
Q Consensus 15 ~~~Pl~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~~~~~~~lg~vliRG~~I~~I~~~~~ 93 (98)
...|+.+|.+++++++ .+++++|++|+|+|.|||+|||++|+||+|++. +...+.+|.++|||+||++|.++++
T Consensus 7 ~~~P~~~L~~~~~~~V----~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~-~~~~~~lg~v~iRG~~I~~i~~~~~ 80 (81)
T 1th7_A 7 AETAHKVLAESLNNLV----LVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQS-DGSGKKLGTIVIRGDNVILISPLQT 80 (81)
T ss_dssp CHHHHHHHHHHTTSEE----EEEETTTEEEEEEEEEECTTCCEEEEEEEEECS-SSCEEEEEEEEECGGGEEEEEEC--
T ss_pred ccchHHHHHHhCCCeE----EEEEcCCcEEEEEEEEEcCCCCEEEccEEEEec-CCceeECCEEEECCCEEEEEEecCC
Confidence 3589999999999994 347899999999999999999999999999973 5678899999999999999999875
No 12
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.90 E-value=2.3e-23 Score=130.55 Aligned_cols=72 Identities=13% Similarity=0.142 Sum_probs=65.3
Q ss_pred eCcHHHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEeceEEEEecCceeeeeCeEEEeCCcEEEEEecC
Q psy10748 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92 (98)
Q Consensus 16 ~~Pl~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~~~~~~~lg~vliRG~~I~~I~~~~ 92 (98)
..|+++|+++++++ |++++++|++|+|+|.|||+|||++|+||+|+.. +...+.++.++|||+||.+|..||
T Consensus 4 ~~P~~~L~~~~g~~----V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~-~~~~~~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 4 GVPIKVLHEAEGHI----VTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYR-DGRVAQLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp CCHHHHHHHTTTSE----EEEEETTSCEEEEEEEEECTTCCEEEEEEEEECT-TSCEEEEEEEEECGGGEEEEEECC
T ss_pred cCHHHHHHHhCCCE----EEEEECCCcEEEEEEEEEccceeEEEEeEEEECC-CCcEEEcCeEEEeCCEEEEEEcCC
Confidence 47999999999999 3458899999999999999999999999999873 446889999999999999999886
No 13
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.90 E-value=2.2e-23 Score=132.63 Aligned_cols=75 Identities=27% Similarity=0.431 Sum_probs=66.4
Q ss_pred ceeeeeCcHHHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEeceEEEEecCceeeeeCeEEEeCCcEEEEEe
Q psy10748 11 VQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90 (98)
Q Consensus 11 ~~~~~~~Pl~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~~~~~~~lg~vliRG~~I~~I~~ 90 (98)
.+.....|+.+|.+++++++ .+++++|++|+|+|.|||+|||++|+||+|++ .+...+.+|.++|||+||++|.+
T Consensus 9 ~~~~~~~P~~~L~~~~~~~V----~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~-~~~~~~~lg~v~IRG~~I~~i~p 83 (83)
T 1mgq_A 9 QRVNVQRPLDALGNSLNSPV----IIKLKGDREFRGVLKSFDLHMNLVLNDAEELE-DGEVTRRLGTVLIRGDNIVYISP 83 (83)
T ss_dssp -CCCTTCTTHHHHHTTTSEE----EEEETTTEEEEEEEEEECTTCCEEEEEEEEEE-TTEEEEEEEEEEECGGGEEEEEC
T ss_pred ccccCcChHHHHHHhCCCEE----EEEEcCCcEEEEEEEEECCCceeEEccEEEEe-cCCcccCCCEEEECCCEEEEEEC
Confidence 44557899999999999984 34789999999999999999999999999997 45678899999999999999975
No 14
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.89 E-value=5.8e-23 Score=137.96 Aligned_cols=77 Identities=26% Similarity=0.407 Sum_probs=55.8
Q ss_pred eCcHHHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEeceEEEEecC------ceeeeeCeEEEeCCcEEEEE
Q psy10748 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS------KTRKALGTIMLKGDNITLIQ 89 (98)
Q Consensus 16 ~~Pl~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~~------~~~~~lg~vliRG~~I~~I~ 89 (98)
..|+..|.+|++++++ |++++|++|+|+|.|||+||||+|+||+|++.++ ...+.+|.++|||+||++|.
T Consensus 22 ke~i~~L~~~l~k~V~----V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~ 97 (113)
T 4emk_C 22 KESILDLSRYQDQRIQ----ATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIA 97 (113)
T ss_dssp ----------CCSEEE----EEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEE
T ss_pred cchHHHHHHHcCCcEE----EEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEE
Confidence 4678999999999954 4789999999999999999999999999997542 35789999999999999999
Q ss_pred ecCCCcc
Q psy10748 90 NLNPDEV 96 (98)
Q Consensus 90 ~~~~~~~ 96 (98)
++|..|.
T Consensus 98 ~~d~~ee 104 (113)
T 4emk_C 98 PMDGSEE 104 (113)
T ss_dssp ECC----
T ss_pred ecCcccc
Confidence 9987764
No 15
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.89 E-value=6.2e-23 Score=133.58 Aligned_cols=77 Identities=23% Similarity=0.400 Sum_probs=61.0
Q ss_pred eeeeeCcHHHHHHHhcCcceEEEEEEecCC-eEEEEEEEEEcccCCeEEeceEEEEecCceeeeeCeEEEeCCcEEEEEe
Q psy10748 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVN-LRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90 (98)
Q Consensus 12 ~~~~~~Pl~~L~~~i~k~vrV~V~v~l~~g-~~i~G~L~gfD~~mNlvL~d~~e~~~~~~~~~~lg~vliRG~~I~~I~~ 90 (98)
......|+.+|.+++++++ .|++++| ++|+|+|.|||+|||++|+||+|++ +++..+.+|.++|||+||++|.+
T Consensus 16 ~~~~~~P~~~L~~~i~k~V----~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~-~~~~~~~lg~v~IRG~nI~~I~~ 90 (93)
T 1n9r_A 16 AMQPVNPKPFLKGLVNHRV----GVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFV-AGVSHGTLGEIFIRCNNVLYIRE 90 (93)
T ss_dssp ----------CGGGTTSEE----EEEESSTTEEEEEEEEECCTTTCEEEEEEEEEE-TTEEEEECCSEEECGGGEEEEEE
T ss_pred ccccCChHHHHHHhCCCEE----EEEEcCCCEEEEEEEEEEccccEEEEeeEEEEc-CCCeEeEcCEEEEcCCeEEEEEe
Confidence 3455789999999999994 3478999 9999999999999999999999996 56678899999999999999998
Q ss_pred cCC
Q psy10748 91 LNP 93 (98)
Q Consensus 91 ~~~ 93 (98)
++.
T Consensus 91 ~~~ 93 (93)
T 1n9r_A 91 LPN 93 (93)
T ss_dssp CCC
T ss_pred CCC
Confidence 863
No 16
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.88 E-value=1e-22 Score=132.40 Aligned_cols=74 Identities=24% Similarity=0.394 Sum_probs=63.3
Q ss_pred eeeCcHHHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEeceEEEEec----C--------ceeeeeCeEEEe
Q psy10748 14 VMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIK----S--------KTRKALGTIMLK 81 (98)
Q Consensus 14 ~~~~Pl~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~----~--------~~~~~lg~vliR 81 (98)
.+..|+++|+.+++++++ +++++|++|+|+|.|||+||||+|+||+|++.. + ...+.+|.++||
T Consensus 6 ~~~~Pl~lL~~~~~~~V~----V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iR 81 (93)
T 4emg_A 6 AVAEPLDLVRLSLDEIVY----VKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVR 81 (93)
T ss_dssp ---CTTHHHHTTTTSEEE----EEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEEC
T ss_pred ccCCCHHHHHHhCCCEEE----EEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEEC
Confidence 356999999999999944 478999999999999999999999999999852 2 247899999999
Q ss_pred CCcEEEEEec
Q psy10748 82 GDNITLIQNL 91 (98)
Q Consensus 82 G~~I~~I~~~ 91 (98)
|+||++|+++
T Consensus 82 G~nVv~I~p~ 91 (93)
T 4emg_A 82 GDSVILIAPP 91 (93)
T ss_dssp GGGEEEEECC
T ss_pred CCeEEEEEec
Confidence 9999999986
No 17
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.88 E-value=7.4e-23 Score=135.98 Aligned_cols=81 Identities=16% Similarity=0.168 Sum_probs=55.1
Q ss_pred ceeeeeCcHHHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEeceEEEEecCceeeeeCeEEEeCCcEEEEEe
Q psy10748 11 VQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90 (98)
Q Consensus 11 ~~~~~~~Pl~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~~~~~~~lg~vliRG~~I~~I~~ 90 (98)
+++-.-.|+.+|.+++++++ .|++++|++|+|+|.|||+|||++|+||+|+..+++..+.++.++|||+||.+|..
T Consensus 10 ~~~~~~~p~~lL~~~igk~V----~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~IRG~nI~~I~~ 85 (105)
T 4emh_A 10 HSQDPMLPLTLLNATQGRPI----LVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRI 85 (105)
T ss_dssp ----------------CCEE----EEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEECGGGEEEEEC
T ss_pred ccCCCCcHHHHHHHhCCCEE----EEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEEeCCeEEEEec
Confidence 45556689999999999994 44789999999999999999999999999987666678899999999999999999
Q ss_pred cCCCc
Q psy10748 91 LNPDE 95 (98)
Q Consensus 91 ~~~~~ 95 (98)
+|...
T Consensus 86 pd~l~ 90 (105)
T 4emh_A 86 QDEVL 90 (105)
T ss_dssp -----
T ss_pred CHHHh
Confidence 98654
No 18
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.88 E-value=1.1e-22 Score=127.59 Aligned_cols=72 Identities=22% Similarity=0.487 Sum_probs=51.0
Q ss_pred CcHHHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEeceEEEEecCceeeeeCeEEEeCCcEEEEEecCC
Q psy10748 17 QPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNP 93 (98)
Q Consensus 17 ~Pl~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~~~~~~~lg~vliRG~~I~~I~~~~~ 93 (98)
.|..+|.++++++++ +++++|++|+|+|.|||+|||++|+||+|+.. +.+.+.+|.++|||+||++|++.|+
T Consensus 4 ~~~~~L~~~~~k~V~----V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~-~~~~~~lg~v~iRG~~I~~i~~~d~ 75 (76)
T 3s6n_G 4 AHPPELKKFMDKKLS----LKLNGGRHVQGILRGFDPFMNLVIDECVEMAT-SGQQNNIGMVVIRGNSIIMLEALER 75 (76)
T ss_dssp ----------CCEEE----EEETTTEEEEEEEEEECTTCCEEEEEEEECCC-C----CBSSEEECSSSEEEEEC---
T ss_pred cchHHHHHhCCCeEE----EEECCCcEEEEEEEEECCcceEEEeceEEEcc-CCcEeEcCEEEECCCeEEEEEeccC
Confidence 467899999999944 47899999999999999999999999999874 4567899999999999999999875
No 19
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.87 E-value=3.5e-22 Score=134.58 Aligned_cols=79 Identities=18% Similarity=0.318 Sum_probs=63.9
Q ss_pred eeeCcHHHHHHHhc--CcceEEEEEEecCCeEEEEEEEEEcccCCeEEeceEEEEecC-------------ceeeeeCeE
Q psy10748 14 VMVQPINLIFRFLQ--NRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS-------------KTRKALGTI 78 (98)
Q Consensus 14 ~~~~Pl~~L~~~i~--k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~~-------------~~~~~lg~v 78 (98)
.+..|+.+|.++++ ++ | .|++++|++|.|+|+|||+||||+|+||+|++... ...+.+|.+
T Consensus 24 ~~~~Pl~lL~~~~~~~k~--V--~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v 99 (118)
T 1b34_B 24 FNTGPLSVLTQSVKNNTQ--V--LINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKM 99 (118)
T ss_dssp --CCHHHHHHHHHHHTCE--E--EEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEE
T ss_pred cccChHHHHHHHhcCCcE--E--EEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeE
Confidence 36799999999996 77 3 34789999999999999999999999999987321 125679999
Q ss_pred EEeCCcEEEEEecCCCcc
Q psy10748 79 MLKGDNITLIQNLNPDEV 96 (98)
Q Consensus 79 liRG~~I~~I~~~~~~~~ 96 (98)
+|||+||++|.+++..-+
T Consensus 100 ~IRG~nVv~I~~~~~~~~ 117 (118)
T 1b34_B 100 FLRGDSVIVVLRNPLIAG 117 (118)
T ss_dssp EECGGGEEEEEECCCCCC
T ss_pred EEcCCEEEEEEeCchhhc
Confidence 999999999999987644
No 20
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.87 E-value=3.5e-22 Score=134.96 Aligned_cols=74 Identities=18% Similarity=0.257 Sum_probs=66.7
Q ss_pred CcHHHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEeceEEEEecCceeeeeCeEEEeCCcEEEEEecCCCc
Q psy10748 17 QPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNPDE 95 (98)
Q Consensus 17 ~Pl~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~~~~~~~lg~vliRG~~I~~I~~~~~~~ 95 (98)
.|+.+|.+++++++ +|+|++|++|+|+|.|||+||||+|+||+|+. ++.+.++++.++|||+||.+|.++|..+
T Consensus 2 ~p~~~L~~~~gk~V----~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~-~~~~~~~lg~v~IRG~nI~~I~~pd~l~ 75 (119)
T 1b34_A 2 KLVRFLMKLSHETV----TIELKNGTQVHGTITGVDVSMNTHLKAVKMTL-KNREPVQLETLSIRGNNIRYFILPDSLP 75 (119)
T ss_dssp CHHHHHHTCTTCEE----EEEETTCCEEEEEEEEECTTCCEEEEEEEEEC-TTSCCEEEEEEEECGGGEEEEECCTTCC
T ss_pred ChHHHHHHhCCCEE----EEEEcCCCEEEEEEEEEcccceEEeccEEEec-CCCceeEcceEEEcCCeEEEEEeccccc
Confidence 79999999999993 44789999999999999999999999999986 4556789999999999999999998753
No 21
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.86 E-value=3.2e-22 Score=128.76 Aligned_cols=75 Identities=20% Similarity=0.393 Sum_probs=62.6
Q ss_pred CcHHHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEeceEEEEe---------cCceeeeeCeEEEeCCcEEE
Q psy10748 17 QPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI---------KSKTRKALGTIMLKGDNITL 87 (98)
Q Consensus 17 ~Pl~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~---------~~~~~~~lg~vliRG~~I~~ 87 (98)
.|..+|.++++++++ |++++|++|+|+|+|||+||||+|+||+|++. .+...+.+|.++|||+||++
T Consensus 4 ~~~~~L~~~~~k~V~----V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~ 79 (91)
T 1d3b_B 4 GKSSKMLQHIDYRMR----CILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVS 79 (91)
T ss_dssp ---CCCGGGTTSEEE----EEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEE
T ss_pred ChhHHHHHHcCCcEE----EEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEE
Confidence 577889999999954 47899999999999999999999999999753 13457899999999999999
Q ss_pred EEecCCCc
Q psy10748 88 IQNLNPDE 95 (98)
Q Consensus 88 I~~~~~~~ 95 (98)
|.++++-+
T Consensus 80 i~~~~~~~ 87 (91)
T 1d3b_B 80 MTVEGPPP 87 (91)
T ss_dssp EEEEECCC
T ss_pred EEcCCCCC
Confidence 99886543
No 22
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.85 E-value=3.2e-21 Score=131.66 Aligned_cols=75 Identities=12% Similarity=0.130 Sum_probs=66.8
Q ss_pred eCcHHHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEeceEEEEecCceeeeeCeEEEeCCcEEEEEecCCCc
Q psy10748 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNPDE 95 (98)
Q Consensus 16 ~~Pl~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~~~~~~~lg~vliRG~~I~~I~~~~~~~ 95 (98)
..|+++|+++++++ |+|+|++|++|+|+|.+||+|||++|+|++|+..+ .+...++.++|||+||.+|..+|...
T Consensus 4 ~~P~~~L~~~~gk~----V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~-g~~~~l~~v~IRGnnI~~I~lpd~l~ 78 (126)
T 2y9a_D 4 GVPIKVLHEAEGHI----VTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRD-GRVAQLEQVYIRGSKIRFLILPDMLK 78 (126)
T ss_dssp CCSHHHHHSCSSCE----EEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTT-SCCEEEEEEEECGGGEEEEECCSSCS
T ss_pred ccHHHHHHHhCCCE----EEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCC-CcEeecccEEEeCCEEEEEEcccccc
Confidence 57999999999999 34588999999999999999999999999998643 35789999999999999999887653
No 23
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.82 E-value=7.6e-20 Score=135.48 Aligned_cols=74 Identities=22% Similarity=0.425 Sum_probs=64.3
Q ss_pred eCcHHHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEeceEEEEe---------cCceeeeeCeEEEeCCcEE
Q psy10748 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI---------KSKTRKALGTIMLKGDNIT 86 (98)
Q Consensus 16 ~~Pl~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~---------~~~~~~~lg~vliRG~~I~ 86 (98)
+.+-..|.+|++++++| ++++|++|+|+|++||+||||+|+||+|++. +.++.+++++++|||+||+
T Consensus 3 v~k~~kL~klIdKrV~V----~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV 78 (231)
T 3pgw_B 3 VGKSSKMLQHIDYRMRC----ILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLV 78 (231)
T ss_pred cCchHHHHHhcCCeEEE----EECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEE
Confidence 46778999999999544 6899999999999999999999999999873 1246889999999999999
Q ss_pred EEEecCC
Q psy10748 87 LIQNLNP 93 (98)
Q Consensus 87 ~I~~~~~ 93 (98)
+|+..+.
T Consensus 79 ~Isve~p 85 (231)
T 3pgw_B 79 SMTVEGP 85 (231)
T ss_pred EEEecCC
Confidence 9997644
No 24
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.76 E-value=1.1e-18 Score=119.73 Aligned_cols=66 Identities=15% Similarity=0.155 Sum_probs=59.0
Q ss_pred HHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEeceEEEEecCceeeeeCeEEEeCCcEEEEEecCCC
Q psy10748 20 NLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNPD 94 (98)
Q Consensus 20 ~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~~~~~~~lg~vliRG~~I~~I~~~~~~ 94 (98)
.+|.+++++++ .+++++|++|+|+|.|||+|||++|+||+|+. .+.+|.++|||+||++|.+++..
T Consensus 3 ~~L~~~igk~V----~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~-----~~~lg~v~IRG~nI~~I~~~d~~ 68 (130)
T 1m5q_A 3 AELNNLLGREV----QVVLSNGEVYKGVLHAVDNQLNIVLANASNKA-----GEKFNRVFIMYRYIVHIDSTERR 68 (130)
T ss_dssp HHHHHTTTSEE----EEEETTSCEEEEEEEEECTTCCEEEEEEECTT-----CCEEEEEEECGGGEEEEEECCCC
T ss_pred hHHHHhCCCeE----EEEECCCcEEEEEEEEEcccceeEEeeEEEEc-----CCEeceEEEeCCeEEEEEcCCcc
Confidence 58999999994 44789999999999999999999999999862 26789999999999999999865
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.38 E-value=1.7e-06 Score=55.29 Aligned_cols=67 Identities=18% Similarity=0.280 Sum_probs=54.0
Q ss_pred CcHHHHHHHhcCcceEEEEEEecCCeEEEEEEEEEc-ccCCeEEeceEEEEecCceeeeeCeEEEeCCcEEEEEecCCCc
Q psy10748 17 QPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFD-EYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNPDE 95 (98)
Q Consensus 17 ~Pl~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD-~~mNlvL~d~~e~~~~~~~~~~lg~vliRG~~I~~I~~~~~~~ 95 (98)
.|+ .|..+++|+|+| .+.+|++|+|.|.+|| .-.|++|.|+. ++ .....++|-|..|..|...+..+
T Consensus 8 ~p~-el~~li~KeV~V----~l~dg~~y~G~l~tvDp~s~sIvL~n~~----~~---~~~~~~iI~G~aI~eI~v~~~~~ 75 (86)
T 1y96_A 8 GPL-EWQDYIYKEVRV----TASEKNEYKGWVLTTDPVSANIVLVNFL----ED---GSMSVTGIMGHAVQTVETMNEGD 75 (86)
T ss_dssp CHH-HHHHTTTCEEEE----EETTTEEEEEEEEEECTTTCCEEEEEEC----TT---SCEEEEEECGGGEEEEEEEECCC
T ss_pred CHH-HHHhhcCCEEEE----EEcCCCEEEEEEEEECCCceEEEEeecc----cC---CeEEEEEEecceEEEEEEecchh
Confidence 344 688999999554 6899999999999999 99999999982 22 22478899999999988765543
No 26
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=97.56 E-value=0.00016 Score=45.75 Aligned_cols=39 Identities=26% Similarity=0.544 Sum_probs=32.9
Q ss_pred HHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEec
Q psy10748 20 NLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLES 61 (98)
Q Consensus 20 ~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d 61 (98)
.+|+....+++.|+| .|.||..++|.+.|||+|+ +.|++
T Consensus 10 ~fLn~lrk~~~~Vtv--~L~NG~~l~G~I~~fD~ft-VlL~~ 48 (82)
T 1u1s_A 10 PYLNTLRKERVPVSI--YLVNGIKLQGQIESFDQFV-ILLKN 48 (82)
T ss_dssp HHHHHHHHTTCCEEE--EETTSCEEEEEEEEECSSE-EEEES
T ss_pred HHHHHHHHcCCcEEE--EEeCCcEEEEEEEEEcceE-EEEec
Confidence 478888888888766 6799999999999999999 66653
No 27
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=97.44 E-value=0.00026 Score=46.59 Aligned_cols=39 Identities=26% Similarity=0.558 Sum_probs=33.6
Q ss_pred HHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEec
Q psy10748 20 NLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLES 61 (98)
Q Consensus 20 ~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d 61 (98)
.+|+.+..+++.|+| +|.||..++|.+.+||+|+ +.|++
T Consensus 12 ~fLn~lrk~k~~VtI--~LvNG~~L~G~I~~fD~f~-VlL~~ 50 (104)
T 2y90_A 12 PFLNALRRERVPVSI--YLVNGIKLQGQIESFDQFV-ILLKN 50 (104)
T ss_dssp HHHHHHHHTTCCEEE--EETTSCEEEEEEEEECSSE-EEEES
T ss_pred HHHHHHHhcCCcEEE--EEeCCCEEEEEEEEECCcE-EEEEC
Confidence 488899999988765 7899999999999999999 66654
No 28
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=97.42 E-value=0.00032 Score=44.05 Aligned_cols=58 Identities=21% Similarity=0.415 Sum_probs=42.8
Q ss_pred HHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEeceEEEEecCceeeeeCeEEEeCCcEEEEEecCC
Q psy10748 20 NLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNP 93 (98)
Q Consensus 20 ~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~~~~~~~lg~vliRG~~I~~I~~~~~ 93 (98)
.+|+.+..++..|+| +|.||..++|.+.+||+|+ +.|++ + ...+|==..|.+|.|..+
T Consensus 11 ~fLn~lrk~k~~VtI--~LvnG~~L~G~I~~fD~f~-VlL~~-------g------~~qLIYKhAISTI~P~~~ 68 (79)
T 3sb2_A 11 PFLNALRKEHVPVSI--YLVNGIKLQGHVESFDQYV-VLLRN-------T------VTQMVYKHAISTVVPARA 68 (79)
T ss_dssp HHHHHHHHTTCCEEE--EETTSCEEEEEEEEECSSE-EEEES-------S------SEEEEEGGGEEEEEESSC
T ss_pred HHHHHHHhcCCeEEE--EEeCCCEEEEEEEEECCcE-EEEEC-------C------ceEEEEeeeEEEEeecCc
Confidence 478889999988765 7899999999999999999 55542 2 123455556666666544
No 29
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=97.41 E-value=0.00023 Score=44.60 Aligned_cols=38 Identities=18% Similarity=0.534 Sum_probs=31.7
Q ss_pred HHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEe
Q psy10748 20 NLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLE 60 (98)
Q Consensus 20 ~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~ 60 (98)
.+|+.+..+++.|+| .|.||..++|.+.|||+|+ +.|+
T Consensus 14 ~fLn~lrk~~~~Vtv--~L~nG~~l~G~I~~fD~f~-VlL~ 51 (78)
T 3ahu_A 14 QFLNQIRKENTYVTV--FLLNGFQLRGQVKGFDNFT-VLLE 51 (78)
T ss_dssp HHHHHHHHHTCCEEE--EETTSCEEEEEEEEECSSE-EEEE
T ss_pred HHHHHHHHcCCcEEE--EEeCCeEEEEEEEEEcceE-EEEE
Confidence 477788878877765 6799999999999999999 5555
No 30
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=97.40 E-value=0.00026 Score=43.93 Aligned_cols=59 Identities=22% Similarity=0.413 Sum_probs=44.7
Q ss_pred HHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEeceEEEEecCceeeeeCeEEEeCCcEEEEEecCCC
Q psy10748 20 NLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNPD 94 (98)
Q Consensus 20 ~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~~~~~~~lg~vliRG~~I~~I~~~~~~ 94 (98)
.+|+.+..++..|+| .|.||..++|.+.+||+|+ +.|++. ...+|-=..|.+|.+..+.
T Consensus 12 ~~L~~lrk~k~~Vti--~L~nG~~l~G~I~~fD~f~-vlL~~~-------------~~~LIYKhAIsTI~p~~~v 70 (74)
T 2ylb_A 12 PFLNALRRERVPVSI--YLVNGIKLQGQIESFDQFV-ILLKNT-------------VSQMVYKHAISTVVPSRPV 70 (74)
T ss_dssp HHHHHHHHHTCCEEE--EETTSCEEEEEEEEECSSE-EEEESS-------------SEEEEEGGGEEEEEESSCC
T ss_pred HHHHHHHhcCCcEEE--EEeCCCEEEEEEEEECCcE-EEEECC-------------ceEEEEeeeEEEEeEcccc
Confidence 478888888877755 7899999999999999998 666541 3345666677777776543
No 31
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=97.37 E-value=0.0003 Score=43.90 Aligned_cols=38 Identities=21% Similarity=0.468 Sum_probs=32.0
Q ss_pred HHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEe
Q psy10748 20 NLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLE 60 (98)
Q Consensus 20 ~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~ 60 (98)
.+|+.+..++..|+| .|.||..++|.+.+||+|+ +.|+
T Consensus 10 ~fLn~lrk~k~~VtI--~L~nG~~l~G~I~~fD~f~-VlL~ 47 (77)
T 1kq1_A 10 KALENFKANQTEVTV--FFLNGFQMKGVIEEYDKYV-VSLN 47 (77)
T ss_dssp HHHHHHHHHTCEEEE--EETTSCEEEEEEEEECSSE-EEEE
T ss_pred HHHHHHHhcCCeEEE--EEeCCCEEEEEEEEECCcE-EEEE
Confidence 478888888877755 7899999999999999999 5555
No 32
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=97.27 E-value=0.00028 Score=43.52 Aligned_cols=37 Identities=16% Similarity=0.344 Sum_probs=30.1
Q ss_pred HHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEe
Q psy10748 21 LIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLE 60 (98)
Q Consensus 21 ~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~ 60 (98)
+|+....+++.|+| .|.||..++|.+.|||+|+ +.|+
T Consensus 17 fLn~~r~~~~~Vtv--~L~NG~~l~G~I~~fD~ft-Vll~ 53 (71)
T 2qtx_A 17 FEYARRLNGKKVKI--FLRNGEVLDAEVTGVSNYE-IMVK 53 (71)
T ss_dssp CCGGGGGTTCEEEE--EETTSCEEEEEEEEECSSE-EEEE
T ss_pred HHHHHHHcCCcEEE--EEeCCeEEEEEEEEEcceE-EEEE
Confidence 55666778877765 6799999999999999999 5554
No 33
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=95.70 E-value=0.15 Score=31.27 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=44.5
Q ss_pred Cc-HHHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEeceEEEEecCceeeeeCeEEEeCCcEEEEEe
Q psy10748 17 QP-INLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90 (98)
Q Consensus 17 ~P-l~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~~~~~~~lg~vliRG~~I~~I~~ 90 (98)
.| +..|..++..+..| .+++.+|..++|.+.-+|.|. +-|.+... ...+|.-..|++|.+
T Consensus 10 lPsvR~lQ~~Ik~k~~V--~I~L~tGd~l~G~i~WQD~~c-l~L~~~~~-----------~~~LI~R~AI~~Ikp 70 (72)
T 3hfn_A 10 LPSIRQLQNLIKQAAPV--EIKLVTGDAITGRVLWQDPTC-VCIADENS-----------RQTTIWKQAIAYLQP 70 (72)
T ss_dssp HHHHHHHHHHHSSCCEE--EEEETTSCEEEEEEEEECSSE-EEEEC--------------CEEEEEGGGEEEEEE
T ss_pred CCcHHHHHHHHhhCceE--EEEecCCCEEEEEEEEECCCE-EEEEcCCC-----------CeEEEEeeeeEEEEe
Confidence 45 77999999999776 558999999999999999998 55554321 235566666777655
No 34
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=95.43 E-value=0.048 Score=32.98 Aligned_cols=62 Identities=16% Similarity=0.268 Sum_probs=43.5
Q ss_pred HHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEeceEEEEecCceeeeeCeEEEeCCcEEEEEec
Q psy10748 20 NLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNL 91 (98)
Q Consensus 20 ~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~~~~~~~lg~vliRG~~I~~I~~~ 91 (98)
..|.++-++|+.|.| .+...++|+|.-||+-. +.|+|++.+. + .+-..++++=+.|-.|...
T Consensus 9 ktL~~WKg~rvAv~v----g~ehSFtGiledFDeEv-iLL~dV~D~~--G---Nk~k~liv~idDinWimL~ 70 (71)
T 1ycy_A 9 KVLKEWKGHKVAVSV----GGDHSFTGTLEDFDEEV-ILLKDVVDVI--G---NRGKQMLIGLEDINWIMLL 70 (71)
T ss_dssp HHHHHHTTSEEEEEE----C----CEEEEEEECSSE-EEEEEEEETT--E---EEEEEEEEEGGGEEEEEEC
T ss_pred HHHHHhCCcEEEEEe----cCcceeeeehhhcCcce-eehhhHHHHh--c---cccceeEEEeccceEEEee
Confidence 368899999976644 77789999999999998 8899998654 2 2235677777777766543
No 35
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=95.27 E-value=0.19 Score=31.92 Aligned_cols=68 Identities=22% Similarity=0.383 Sum_probs=51.5
Q ss_pred HHhcCcceEEEEEEecCCeEEEEEEEEEcccC-CeEEeceEEEEecCc--------eeeeeCeEEEeCCcEEEEEecCCC
Q psy10748 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYM-NIVLESAEEYNIKSK--------TRKALGTIMLKGDNITLIQNLNPD 94 (98)
Q Consensus 24 ~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~m-NlvL~d~~e~~~~~~--------~~~~lg~vliRG~~I~~I~~~~~~ 94 (98)
.|++++ |.+..+.+..|+|+|..+|..= -+.|+|+..+-.++. ...-...++.||+.|.-+...+..
T Consensus 10 ~yIGs~----iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~~~ 85 (88)
T 2vxe_A 10 PELGSK----ISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVNNH 85 (88)
T ss_dssp CCTTCE----EEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECCCC
T ss_pred cccCCe----EEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEeccC
Confidence 478899 4557899999999999999763 478899887754331 123457799999999998877654
Q ss_pred c
Q psy10748 95 E 95 (98)
Q Consensus 95 ~ 95 (98)
+
T Consensus 86 p 86 (88)
T 2vxe_A 86 T 86 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 36
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=94.98 E-value=0.055 Score=33.02 Aligned_cols=43 Identities=14% Similarity=0.037 Sum_probs=35.7
Q ss_pred eCc-HHHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEec
Q psy10748 16 VQP-INLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLES 61 (98)
Q Consensus 16 ~~P-l~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d 61 (98)
..| +..|..++..+..| .+++.+|..++|.+.-+|.|. +-|.+
T Consensus 7 ~lPsvR~lQ~~ik~k~~V--~I~L~tG~~l~G~i~WQD~~c-l~L~~ 50 (70)
T 3hfo_A 7 GLPSVRQVQLLIKDQTPV--EIKLLTGDSLFGTIRWQDTDG-LGLVD 50 (70)
T ss_dssp SCHHHHHHHHHHHHTCEE--EEEETTSCEEEEEEEEECSSE-EEEEC
T ss_pred CCCcHHHHHHHHhhCceE--EEEecCCCEEEEEEEEeCCCE-EEEEc
Confidence 356 78999999999776 558999999999999999998 55554
No 37
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=93.47 E-value=0.18 Score=32.43 Aligned_cols=71 Identities=14% Similarity=0.279 Sum_probs=48.7
Q ss_pred cHHHHHHHhcCcceEEEEEEecCCeEEEEEEEEEccc-CCeEEeceEEEEecCc--------eeeeeCeEEEeCCcEEEE
Q psy10748 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEY-MNIVLESAEEYNIKSK--------TRKALGTIMLKGDNITLI 88 (98)
Q Consensus 18 Pl~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~-mNlvL~d~~e~~~~~~--------~~~~lg~vliRG~~I~~I 88 (98)
|-.--..|+|++ |.+..+.+..|+|+|-.+|.- --+.|+|+..+-+++. ...-...++.||+.|..+
T Consensus 10 ~~~~~~~~IGs~----ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL 85 (95)
T 2fb7_A 10 DPSGGTPYIGSK----ISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDL 85 (95)
T ss_dssp ------CCSSEE----EEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEE
T ss_pred CCCccCcccCCe----EEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceE
Confidence 444556789999 456789999999999999954 3477888776544321 123457899999999988
Q ss_pred EecC
Q psy10748 89 QNLN 92 (98)
Q Consensus 89 ~~~~ 92 (98)
...+
T Consensus 86 ~V~e 89 (95)
T 2fb7_A 86 TVCE 89 (95)
T ss_dssp EESC
T ss_pred EEec
Confidence 7654
No 38
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=86.85 E-value=2.2 Score=26.77 Aligned_cols=62 Identities=15% Similarity=0.204 Sum_probs=46.5
Q ss_pred HHhcCcceEEEEEEecCCe-EEEEEEEEEccc-CCeEEeceEEEEecCceeeeeCeEEEeCCcEEEEEecCC
Q psy10748 24 RFLQNRSRVQIWLYENVNL-RIEGHILGFDEY-MNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNP 93 (98)
Q Consensus 24 ~~i~k~vrV~V~v~l~~g~-~i~G~L~gfD~~-mNlvL~d~~e~~~~~~~~~~lg~vliRG~~I~~I~~~~~ 93 (98)
+|+++. |.+..+++. .|.|.|..+|.. -||.|.++.. +.-+-....+.+|+.-|.-+..++.
T Consensus 6 ~~iGs~----VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f~----NG~~~~s~eVtls~~DI~~L~ii~~ 69 (84)
T 2vc8_A 6 DWLGSI----VSINCGDSLGVYQGRVSAVDQVSQTISLTRPFH----NGVKCLVPEVTFRAGDITELKILEI 69 (84)
T ss_dssp TTTTCE----EEEECCTTTCEEEEEEEEEETTTTEEEEEEEEE----TTEECSSSEEEEEGGGCSEEEEEEC
T ss_pred cccCCE----EEEEECCCceEEEEEEEEeccCCCeEEEehhhh----CCCCCCCcEEEEEecChhheEEEec
Confidence 688888 455789987 999999999976 4799999852 3334444678899988877666543
No 39
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=84.00 E-value=4.3 Score=27.14 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=39.8
Q ss_pred HHHHhcCcceEEEEEEecCCeEEEEEEEEEcccCCeEE--eceEEEEecCceeeeeCeEEEeCCcEEEEEecC
Q psy10748 22 IFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVL--ESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92 (98)
Q Consensus 22 L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL--~d~~e~~~~~~~~~~lg~vliRG~~I~~I~~~~ 92 (98)
...|++.. |.|.|++|..++|++..+|. =+|.| .+|...+. -|+.+.|.-+..++
T Consensus 7 ~sqFlGy~----V~v~LkDgs~~qG~I~~vd~-k~LtL~~~~a~~s~~-----------~I~asdI~DLkVl~ 63 (125)
T 4a53_A 7 VADFYGSN----VEVLLNNDSKARGVITNFDS-SNSILQLRLANDSTK-----------SIVTKDIKDLRILP 63 (125)
T ss_dssp HHHHTTCE----EEEEETTSCEEEEEEEEEET-TTTEEEEEETTTEEE-----------EEEGGGEEEEEECC
T ss_pred HHHhcCce----EEEEECCCCEeeEEEEeecC-CeeEEeccccccccc-----------eeecccccceeeee
Confidence 35789999 34578999999999999985 45888 88864431 46666666555443
No 40
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=80.55 E-value=8.3 Score=24.11 Aligned_cols=62 Identities=10% Similarity=0.153 Sum_probs=44.8
Q ss_pred HHHHHHHhcCcceEEEEEEecCCeEEEEEEEEEcccC-CeEEeceEEEEecCceeeeeCeEEEeCCcEEEEEe
Q psy10748 19 INLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYM-NIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90 (98)
Q Consensus 19 l~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~gfD~~m-NlvL~d~~e~~~~~~~~~~lg~vliRG~~I~~I~~ 90 (98)
|.+|....+++ |.+.+..+.+..|...++|... |+..++-. .+ .-..+..++|++-|++++.
T Consensus 21 Lr~l~~m~~~~----v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~----TP--iGv~~eAlLR~~Dii~~sF 83 (85)
T 1y96_B 21 LRSLLAMVGHQ----VSFTLHEGVRVAAHFGATDLDVANFYVSQLQ----TP--IGVQAEALLRCSDIISYTF 83 (85)
T ss_dssp HHHHHHHTTSE----EEEEEGGGCEEEEEEEEECTTCCEEEEEEEC----CT--TCCEEEEEEEGGGEEEEEE
T ss_pred HHHHHHhCCCc----eEEEEeCCeEEEEEEEecCcccceeEhhhcC----CC--cccchhhhhhcCCEEEEEe
Confidence 56777788888 3457899999999999999754 44444422 11 1125788999999999875
No 41
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=76.51 E-value=3.1 Score=28.46 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=25.6
Q ss_pred HHHHHHhcCcceEEEEEEe----cCCeEEEEEEEEEcccCCeEEe
Q psy10748 20 NLIFRFLQNRSRVQIWLYE----NVNLRIEGHILGFDEYMNIVLE 60 (98)
Q Consensus 20 ~~L~~~i~k~vrV~V~v~l----~~g~~i~G~L~gfD~~mNlvL~ 60 (98)
..+.+|+|+.++| ++ .+.+.++|+|.++|.-. +.|.
T Consensus 97 ~df~r~~G~~V~V----~l~~~~~g~k~~~G~L~~~~~~~-v~l~ 136 (164)
T 1ib8_A 97 DAVAGAVGKYIHV----GLYQAIDKQKVFEGTLLAFEEDE-LTME 136 (164)
T ss_dssp HHHHHHCSEEEEE----ECSSCSSSCSEEEEEEEEEETTE-EEEE
T ss_pred HHHHHhCCcEEEE----EEecccCCceEEEEEEEEEeCCE-EEEE
Confidence 3566889999543 55 45589999999998753 4443
No 42
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=64.39 E-value=9.6 Score=27.73 Aligned_cols=26 Identities=12% Similarity=0.054 Sum_probs=22.4
Q ss_pred EecCCeEEEEEEEEEcccCCeEEece
Q psy10748 37 YENVNLRIEGHILGFDEYMNIVLESA 62 (98)
Q Consensus 37 ~l~~g~~i~G~L~gfD~~mNlvL~d~ 62 (98)
...++..++|+..|+|+.=.|++++.
T Consensus 230 ~~~~~~~~~G~~~gId~~G~L~v~~~ 255 (270)
T 3rux_A 230 ELPGGQDVVGIARDIDDQGRLCLDVG 255 (270)
T ss_dssp ECTTSCEEEEEEEEECTTSCEEEEET
T ss_pred EECCCeEEEEEEEEECCCCeEEEEEC
Confidence 45678899999999999999999753
No 43
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=64.18 E-value=21 Score=21.44 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=23.2
Q ss_pred EEEEecCCeEEEEEEEEEcccCCeEE-eceEEEEe
Q psy10748 34 IWLYENVNLRIEGHILGFDEYMNIVL-ESAEEYNI 67 (98)
Q Consensus 34 V~v~l~~g~~i~G~L~gfD~~mNlvL-~d~~e~~~ 67 (98)
|.++..+|+-|-|+++...+.-=+|. +|-.+.+.
T Consensus 22 VL~rw~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv 56 (69)
T 2xk0_A 22 VFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWC 56 (69)
T ss_dssp EEEECTTSCEEEEEEEEECSSCEEEEETTCCEEEE
T ss_pred EEEEecCCCEEEEEEEecCCceEEEEecCCcceee
Confidence 45689999999999976665444443 55555553
No 44
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=54.19 E-value=23 Score=26.01 Aligned_cols=39 Identities=23% Similarity=0.141 Sum_probs=26.4
Q ss_pred cCCeEEEEEEEEEcccCCeEEeceEEEEecCceeeeeCeEEEeC
Q psy10748 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKG 82 (98)
Q Consensus 39 ~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~~~~~~~lg~vliRG 82 (98)
.++..++|+..|+|+.=.|++++... ...-..|.+.+|.
T Consensus 280 ~~~~~~~G~~~gid~~G~L~v~~~~g-----~~~~~~Gev~~r~ 318 (321)
T 1bia_A 280 IGDKEIFGISRGIDKQGALLLEQDGI-----IKPWMGGEISLRS 318 (321)
T ss_dssp ETTEEEEEEEEEECTTSCEEEEETTE-----EEEESSCEEEEC-
T ss_pred ECCcEEEEEEEEECCCCeEEEEECCC-----EEEEEeeeEEEec
Confidence 45678999999999999999975321 1122346666664
No 45
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=44.24 E-value=27 Score=25.96 Aligned_cols=23 Identities=9% Similarity=0.252 Sum_probs=19.6
Q ss_pred cCCeEEEEEEEEEcccCCeEEec
Q psy10748 39 NVNLRIEGHILGFDEYMNIVLES 61 (98)
Q Consensus 39 ~~g~~i~G~L~gfD~~mNlvL~d 61 (98)
.++..++|+..|+|+.=.|++++
T Consensus 286 ~~~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 286 ENDKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp CC-CEEEEEEEEECTTSCEEEEE
T ss_pred ECCeEEEEEEEEECCCCEEEEEE
Confidence 46678999999999999999974
No 46
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=42.69 E-value=50 Score=23.17 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=25.0
Q ss_pred cCCeEEEEEEEEEcccCCeEEeceEEEEecCceeeeeCeEEEeC
Q psy10748 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKG 82 (98)
Q Consensus 39 ~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~~~~~~~lg~vliRG 82 (98)
.++. ++|+..|+|+.=.|++++... ...-..|.+.+|+
T Consensus 195 ~~~~-~~G~~~gId~~G~L~v~~~~G-----~~~~~~Gev~~r~ 232 (233)
T 2eay_A 195 GEGK-ITGKLVGLSEKGGALILTEEG-----IKEILSGEFSLRR 232 (233)
T ss_dssp TEEE-EEEEEEEECTTSCEEEEETTE-----EEEECSCCEEEC-
T ss_pred ECCe-EEEEEEEECCCCeEEEEECCC-----eEEEEEeEEEEec
Confidence 3445 999999999999999975321 1122336666664
No 47
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=42.45 E-value=65 Score=20.58 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=46.7
Q ss_pred HHhcCcceEEEEEEecCCe-EEEEEEEEEcccCCeEEeceEEEEecCce--eeeeCeEEEeCCcEEEEEecCCCc
Q psy10748 24 RFLQNRSRVQIWLYENVNL-RIEGHILGFDEYMNIVLESAEEYNIKSKT--RKALGTIMLKGDNITLIQNLNPDE 95 (98)
Q Consensus 24 ~~i~k~vrV~V~v~l~~g~-~i~G~L~gfD~~mNlvL~d~~e~~~~~~~--~~~lg~vliRG~~I~~I~~~~~~~ 95 (98)
+|+|+-+. +...+.. .|.|.+..+|+ -+|.|.++.. +.- +.....+.+|..-|..+..++.-+
T Consensus 9 dwiG~~VS----I~C~d~LGVyQG~I~~V~~-~~ItL~kaFr----NGiplk~~~~EVtLsa~DI~~L~IIe~~~ 74 (103)
T 2rm4_A 9 DWIGCAVS----IACDEVLGVFQGLIKQISA-EEITIVRAFR----NGVPLRKQNAEVVLKCTDIRSIDLIEPAK 74 (103)
T ss_dssp GGTTCEEE----EEECTTTCEEEEEEEEEET-TEEEEEEEEE----TTEECSCSSSCEEEETTTEEEEEEEECCC
T ss_pred ceeceEEE----EeeCCcceEeeEEEEEccc-ceeEEhhhhh----cCcCcCCCCceEEEEecchhheeeecccc
Confidence 78898843 3567664 99999999996 4499988874 223 345578899999998888775543
No 48
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=35.50 E-value=50 Score=19.07 Aligned_cols=33 Identities=15% Similarity=0.083 Sum_probs=23.4
Q ss_pred EEEEecCCeEEEEEEEEEcccC---CeEEeceEEEE
Q psy10748 34 IWLYENVNLRIEGHILGFDEYM---NIVLESAEEYN 66 (98)
Q Consensus 34 V~v~l~~g~~i~G~L~gfD~~m---NlvL~d~~e~~ 66 (98)
|.++..+|+-|=|+++.+|..- =+..+|..+.+
T Consensus 10 VLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W 45 (58)
T 4hcz_A 10 VLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFL 45 (58)
T ss_dssp EEEECTTSCEEEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred EEEEecCCCEEeEEEEEEecCCCEEEEEEcCCCeEE
Confidence 4568899999999999998763 13334544444
No 49
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=32.35 E-value=74 Score=20.11 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=22.1
Q ss_pred HHHHHHHhcCcceEEEEEEecCCeEEEEEEE
Q psy10748 19 INLIFRFLQNRSRVQIWLYENVNLRIEGHIL 49 (98)
Q Consensus 19 l~~L~~~i~k~vrV~V~v~l~~g~~i~G~L~ 49 (98)
|+-+...++-..+|.+ .+.+|..+.||+-
T Consensus 18 Le~~~~~LdGq~~v~i--~l~DGs~l~GTva 46 (101)
T 2e12_A 18 LEHWVKLLDGQERVRI--ELDDGSMIAGTVA 46 (101)
T ss_dssp HHHHHHTSCTTCEEEE--EETTSCEEEEEES
T ss_pred HHHHHHhhCCeeEEEE--EEcCCCeEeeeec
Confidence 5556667777777655 7899999999873
No 50
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=31.83 E-value=99 Score=19.57 Aligned_cols=55 Identities=13% Similarity=0.036 Sum_probs=40.6
Q ss_pred EEecCCeEEEEEEEEEcccCCeEEeceEEEEecCc--------------eeeeeCeEEEeCCcEEEEEecC
Q psy10748 36 LYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK--------------TRKALGTIMLKGDNITLIQNLN 92 (98)
Q Consensus 36 v~l~~g~~i~G~L~gfD~~mNlvL~d~~e~~~~~~--------------~~~~lg~vliRG~~I~~I~~~~ 92 (98)
+++++|.++-|.+.-=|.. +.++|..+.+.... ....-..++||.+.|+++....
T Consensus 8 iRlvSGEEIia~v~et~~~--i~i~nPv~V~~~~~e~gk~~gigF~pW~plsde~~~ii~~~~ViT~~e~~ 76 (100)
T 3by7_A 8 MRLVTGEDIIGNISESQGL--ITIKKAFVIIPMQATPGKPVQLVLSPWQPYTDDKEIVIDDSKVITITSPK 76 (100)
T ss_dssp EEETTSCEEEEEEEEETTE--EEEEEEEEEEEEC-----CCEEEEEESCTTBCCSEEEEEGGGEEEEECBC
T ss_pred EEecCccceeEEEEecCce--EEEECCEEEEEeecCCCcceeEeeecccccCcCceEEEchhhEEEEEeCC
Confidence 5899999999999976654 77888887764211 0122467999999999998764
No 51
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.69 E-value=2.2 Score=27.45 Aligned_cols=18 Identities=33% Similarity=0.287 Sum_probs=16.6
Q ss_pred EEEEEEcccCCeEEeceE
Q psy10748 46 GHILGFDEYMNIVLESAE 63 (98)
Q Consensus 46 G~L~gfD~~mNlvL~d~~ 63 (98)
|+...||.-.|+.|++|.
T Consensus 35 ~~~~~FDk~TNl~LEeA~ 52 (99)
T 1x4r_A 35 NITQCFDKMTNMKLEVAW 52 (99)
T ss_dssp SCEEECCTTHHHHHHHHH
T ss_pred CeEeechHHHHHHHHHHH
Confidence 779999999999999876
No 52
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=31.61 E-value=51 Score=21.51 Aligned_cols=24 Identities=0% Similarity=-0.032 Sum_probs=18.9
Q ss_pred hcCcceEEEEEEecCCeEEEEEEEEEcc
Q psy10748 26 LQNRSRVQIWLYENVNLRIEGHILGFDE 53 (98)
Q Consensus 26 i~k~vrV~V~v~l~~g~~i~G~L~gfD~ 53 (98)
+|++ |+.+.+||+.|.|++.+...
T Consensus 8 vGq~----V~akh~ngryy~~~V~~~~~ 31 (118)
T 2qqr_A 8 AGQK----VISKHKNGRFYQCEVVRLTT 31 (118)
T ss_dssp TTCE----EEEECTTSSEEEEEEEEEEE
T ss_pred cCCE----EEEECCCCCEEeEEEEEEee
Confidence 4556 45699999999999988653
No 53
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=29.15 E-value=83 Score=24.19 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=23.8
Q ss_pred EEEEecCCeEEEEEEEEEcccCCeEEece
Q psy10748 34 IWLYENVNLRIEGHILGFDEYMNIVLESA 62 (98)
Q Consensus 34 V~v~l~~g~~i~G~L~gfD~~mNlvL~d~ 62 (98)
+.+.+.+|+++.+.++++|....|.|=..
T Consensus 113 i~V~~~dg~~~~a~vv~~d~~~DlAvlkv 141 (448)
T 1ky9_A 113 IKVQLSDGRKFDAKMVGKDPRSDIALIQI 141 (448)
T ss_dssp EEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCEEEEEEEEEcCCCCEEEEEe
Confidence 34467999999999999999999876443
No 54
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=27.15 E-value=89 Score=23.79 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=23.5
Q ss_pred EEEecCCeEEEEEEEEEcccCCeEEece
Q psy10748 35 WLYENVNLRIEGHILGFDEYMNIVLESA 62 (98)
Q Consensus 35 ~v~l~~g~~i~G~L~gfD~~mNlvL~d~ 62 (98)
.+.+.+|+++.+.++++|...+|.|=..
T Consensus 91 ~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 91 SIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred EEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 4467999999999999999998877544
No 55
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=24.94 E-value=91 Score=21.85 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=22.6
Q ss_pred hcCcceEEEEEEecCCeEEEEEEEEEcccCCeEEec
Q psy10748 26 LQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLES 61 (98)
Q Consensus 26 i~k~vrV~V~v~l~~g~~i~G~L~gfD~~mNlvL~d 61 (98)
++++++ + ...++..++|+..|+|+.=.|+ ++
T Consensus 191 ~g~~V~--v--~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 191 IGKQVK--I--LLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp TTCEEE--E--EETTSCEEEEEEEEECSSEEEE-EE
T ss_pred cCCEEE--E--EECCCeEEEEEEEEECCCCeEE-Ec
Confidence 456633 2 4566555999999999999998 64
No 56
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=24.92 E-value=94 Score=18.31 Aligned_cols=20 Identities=15% Similarity=-0.075 Sum_probs=17.2
Q ss_pred EEEecCCeEEEEEEEEEccc
Q psy10748 35 WLYENVNLRIEGHILGFDEY 54 (98)
Q Consensus 35 ~v~l~~g~~i~G~L~gfD~~ 54 (98)
.....+|+-|.|+++.+|+.
T Consensus 21 LA~wtDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 21 LARWSDGLFYLGTIKKINIL 40 (66)
T ss_dssp EEECTTSCEEEEEEEEEETT
T ss_pred EEEEccCcEEEeEEEEEccC
Confidence 44679999999999999974
No 57
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=22.59 E-value=1.2e+02 Score=22.29 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=23.2
Q ss_pred EEEEecCCeEEEEEEEEEcccCCeEEec
Q psy10748 34 IWLYENVNLRIEGHILGFDEYMNIVLES 61 (98)
Q Consensus 34 V~v~l~~g~~i~G~L~gfD~~mNlvL~d 61 (98)
+.+.+.+|+.+.+.++++|....|.|=.
T Consensus 90 i~V~~~dg~~~~a~vv~~d~~~DlAlLk 117 (345)
T 3stj_A 90 ISIQLNDGREFDAKLIGSDDQSDIALLQ 117 (345)
T ss_dssp EEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred EEEEeCCCcEEEEEEEEEcCCCCEEEEE
Confidence 3457799999999999999998877643
No 58
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=22.32 E-value=64 Score=22.71 Aligned_cols=18 Identities=17% Similarity=0.423 Sum_probs=17.1
Q ss_pred EEEEEEEEcccCCeEEec
Q psy10748 44 IEGHILGFDEYMNIVLES 61 (98)
Q Consensus 44 i~G~L~gfD~~mNlvL~d 61 (98)
++|+..|+|+.=.|++++
T Consensus 200 ~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 200 FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CEEEEEEECTTSCEEEEC
T ss_pred EEEEEEEECCCCEEEEEE
Confidence 999999999999999975
No 59
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Probab=20.43 E-value=1.3e+02 Score=21.78 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=25.5
Q ss_pred EEcccCCeEEeceEEEEecCceeeeeCeEEEeCCcEEEEEec
Q psy10748 50 GFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNL 91 (98)
Q Consensus 50 gfD~~mNlvL~d~~e~~~~~~~~~~lg~vliRG~~I~~I~~~ 91 (98)
+.|..|.+++.++.....++.....-+.++|+|.-|..|.+.
T Consensus 2 ~~~~~~~~li~n~~v~~~~~~~~~~~~~v~I~~g~I~~vg~~ 43 (418)
T 2qs8_A 2 SLDVDSKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKG 43 (418)
T ss_dssp -----CCEEEEEEEECCSSCSSCEEEEEEEEETTEEEEEEES
T ss_pred CCCCCccEEEEeeEEEeCCCCccccCcEEEEECCEEEEEeCC
Confidence 467778888888776543222222336899999999999763
No 60
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=20.33 E-value=1.1e+02 Score=23.50 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=24.0
Q ss_pred EEEEecCCeEEEEEEEEEcccCCeEEece
Q psy10748 34 IWLYENVNLRIEGHILGFDEYMNIVLESA 62 (98)
Q Consensus 34 V~v~l~~g~~i~G~L~gfD~~mNlvL~d~ 62 (98)
+.+.+.+|+++.+.++++|...+|.|=..
T Consensus 104 i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 132 (451)
T 3pv2_A 104 ITVTLQDGRRLKARLIGGDSETDLAVLKI 132 (451)
T ss_dssp EEEECTTSCEEECEEEEEETTTTEEEEEC
T ss_pred EEEEEcCCCEEEEEEEecCcCCcEEEEEE
Confidence 34577999999999999999998876443
Done!