Your job contains 1 sequence.
>psy10748
MSGGFKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLE
SAEEYNIKSKTRKALGTIMLKGDNITLIQNLNPDEVKV
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy10748
(98 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0261790 - symbol:SmE "Small ribonucleoprotein part... 365 1.5e-33 1
UNIPROTKB|A1XQR9 - symbol:SNRPE "Small nuclear ribonucleo... 335 2.3e-30 1
UNIPROTKB|P62303 - symbol:SNRPE "Small nuclear ribonucleo... 332 4.9e-30 1
UNIPROTKB|A4FUI2 - symbol:SNRPE "Small nuclear ribonucleo... 332 4.9e-30 1
UNIPROTKB|P62304 - symbol:SNRPE "Small nuclear ribonucleo... 332 4.9e-30 1
UNIPROTKB|I3LDW9 - symbol:SNRPE "Small nuclear ribonucleo... 332 4.9e-30 1
MGI|MGI:98346 - symbol:Snrpe "small nuclear ribonucleopro... 332 4.9e-30 1
RGD|2321675 - symbol:Snrpe "small nuclear ribonucleoprote... 332 4.9e-30 1
ZFIN|ZDB-GENE-040426-1112 - symbol:snrpe "small nuclear r... 329 1.0e-29 1
RGD|2318883 - symbol:LOC100362099 "small nuclear ribonucl... 328 1.3e-29 1
RGD|2319339 - symbol:LOC100361838 "small nuclear ribonucl... 328 1.3e-29 1
UNIPROTKB|F1ME11 - symbol:LOC100296197 "Uncharacterized p... 323 4.4e-29 1
UNIPROTKB|J9P098 - symbol:LOC100855941 "Uncharacterized p... 322 5.6e-29 1
UNIPROTKB|E1BHK8 - symbol:SNRPE "Small nuclear ribonucleo... 316 2.4e-28 1
TAIR|locus:2118781 - symbol:AT4G30330 "AT4G30330" species... 307 2.2e-27 1
TAIR|locus:2053989 - symbol:AT2G18740 "AT2G18740" species... 302 7.3e-27 1
UNIPROTKB|J9NSG1 - symbol:J9NSG1 "Uncharacterized protein... 298 1.9e-26 1
WB|WBGene00004919 - symbol:snr-6 species:6239 "Caenorhabd... 297 2.5e-26 1
UNIPROTKB|J9PAB3 - symbol:J9PAB3 "Uncharacterized protein... 294 5.2e-26 1
UNIPROTKB|F1N150 - symbol:F1N150 "Uncharacterized protein... 289 1.8e-25 1
GENEDB_PFALCIPARUM|MAL13P1.253 - symbol:MAL13P1.253 "smal... 269 2.3e-23 1
UNIPROTKB|Q8IDJ7 - symbol:MAL13P1.253 "Small nuclear ribo... 269 2.3e-23 1
UNIPROTKB|F1LYH0 - symbol:F1LYH0 "Uncharacterized protein... 257 4.3e-22 1
DICTYBASE|DDB_G0302414 - symbol:snrpE "small nuclear ribo... 242 1.7e-20 1
POMBASE|SPBC11G11.06c - symbol:sme1 "Sm snRNP core protei... 239 3.5e-20 1
ASPGD|ASPL0000007577 - symbol:AN6735 species:162425 "Emer... 215 1.2e-17 1
UNIPROTKB|G4MSI0 - symbol:MGG_01450 "Sm snRNP core protei... 215 1.2e-17 1
RGD|1564726 - symbol:Zfp341 "zinc finger protein 341" spe... 218 2.3e-17 1
SGD|S000005685 - symbol:SME1 "Core Sm protein Sm E" speci... 211 3.2e-17 1
UNIPROTKB|A6NHK2 - symbol:SNRPE "Small nuclear ribonucleo... 179 7.9e-14 1
GENEDB_PFALCIPARUM|PF14_0411 - symbol:PF14_0411 "small nu... 105 5.5e-06 1
UNIPROTKB|Q8IL38 - symbol:PF14_0411 "Small nuclear ribonu... 105 5.5e-06 1
ASPGD|ASPL0000026389 - symbol:AN5679 species:162425 "Emer... 104 7.0e-06 1
WB|WBGene00003079 - symbol:lsm-5 species:6239 "Caenorhabd... 103 9.0e-06 1
UNIPROTKB|O18694 - symbol:lsm-5 "Protein LSM-5" species:6... 103 9.0e-06 1
ZFIN|ZDB-GENE-070822-23 - symbol:zgc:171959 "zgc:171959" ... 103 9.0e-06 1
TAIR|locus:2061446 - symbol:SNRNP-G "AT2G23930" species:3... 102 1.1e-05 1
TAIR|locus:2156589 - symbol:SAD1 "SUPERSENSITIVE TO ABA A... 101 1.5e-05 1
UNIPROTKB|Q2HJH0 - symbol:LSM5 "U6 snRNA-associated Sm-li... 100 1.9e-05 1
UNIPROTKB|Q9Y4Y9 - symbol:LSM5 "U6 snRNA-associated Sm-li... 100 1.9e-05 1
MGI|MGI:1913623 - symbol:Lsm5 "LSM5 homolog, U6 small nuc... 100 1.9e-05 1
TAIR|locus:2080777 - symbol:AT3G11500 "AT3G11500" species... 100 1.9e-05 1
UNIPROTKB|G4MRX5 - symbol:MGG_02462 "U6 snRNA-associated ... 98 3.0e-05 1
GENEDB_PFALCIPARUM|MAL8P1.48 - symbol:MAL8P1.48 "small nu... 92 0.00013 1
FB|FBgn0035675 - symbol:CG6610 species:7227 "Drosophila m... 91 0.00017 1
SGD|S000000948 - symbol:LSM5 "Lsm (Like Sm) protein" spec... 90 0.00021 1
DICTYBASE|DDB_G0268716 - symbol:lsm5 "putative U6 small n... 89 0.00027 1
FB|FBgn0261791 - symbol:SmG "Small ribonucleoprotein part... 89 0.00027 1
GENEDB_PFALCIPARUM|MAL8P1.9 - symbol:MAL8P1.9 "u6 snRNA-a... 88 0.00035 1
UNIPROTKB|C0H4Y9 - symbol:MAL8P1.9 "U6 snRNA-associated S... 88 0.00035 1
UNIPROTKB|G4NHA4 - symbol:MGG_03895 "Small nuclear ribonu... 88 0.00035 1
POMBASE|SPBC4B4.05 - symbol:smg1 "U4/U6 x U5 tri-snRNP co... 88 0.00035 1
WB|WBGene00004920 - symbol:snr-7 species:6239 "Caenorhabd... 88 0.00035 1
GENEDB_PFALCIPARUM|PF14_0146 - symbol:PF14_0146 "ribonucl... 91 0.00039 1
UNIPROTKB|Q8ILU8 - symbol:PF14_0146 "Ribonucleoprotein, p... 91 0.00039 1
TAIR|locus:2080487 - symbol:LSM6A "AT3G59810" species:370... 85 0.00072 1
UNIPROTKB|G4MXF4 - symbol:MGG_10740 "Sm snRNP core protei... 84 0.00093 1
>FB|FBgn0261790 [details] [associations]
symbol:SmE "Small ribonucleoprotein particle protein SmE"
species:7227 "Drosophila melanogaster" [GO:0005634 "nucleus"
evidence=IDA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS;IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0000245 "spliceosomal complex assembly" evidence=ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR027078 INTERPRO:IPR001163 EMBL:AE014134 GO:GO:0003723
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K11097 PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 OMA:VQIWLYE EMBL:BT003597
RefSeq:NP_609162.1 UniGene:Dm.33848 ProteinModelPortal:Q9VLV5
SMR:Q9VLV5 DIP:DIP-18284N IntAct:Q9VLV5 MINT:MINT-342402
STRING:Q9VLV5 PaxDb:Q9VLV5 PRIDE:Q9VLV5 EnsemblMetazoa:FBtr0079560
GeneID:34080 KEGG:dme:Dmel_CG18591 UCSC:CG18591-RA CTD:34080
FlyBase:FBgn0261790 InParanoid:Q9VLV5 OrthoDB:EOG4R7STC
PhylomeDB:Q9VLV5 GenomeRNAi:34080 NextBio:786757 Bgee:Q9VLV5
GermOnline:CG18591 Uniprot:Q9VLV5
Length = 94
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 68/89 (76%), Positives = 81/89 (91%)
Query: 5 FKMAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEE 64
FK PKVQKVMVQPINLIFR+LQNRSRVQ+WLYEN++LRIEGHI+GFDEYMN+VL+ AEE
Sbjct: 3 FKGNPKVQKVMVQPINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEE 62
Query: 65 YNIKSKTRKALGTIMLKGDNITLIQNLNP 93
+K++ R+ LG IMLKGDNITLIQN++P
Sbjct: 63 VYVKTRQRRNLGRIMLKGDNITLIQNVSP 91
>UNIPROTKB|A1XQR9 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9823 "Sus scrofa" [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649
SMART:SM00651 KO:K11097 HOVERGEN:HBG003229 PANTHER:PTHR11193
EMBL:DQ629140 EMBL:DQ629141 RefSeq:NP_001090934.1 UniGene:Ssc.1070
UniGene:Ssc.75275 ProteinModelPortal:A1XQR9 GeneID:100038330
KEGG:ssc:100038330 Uniprot:A1XQR9
Length = 92
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 63/85 (74%), Positives = 77/85 (90%)
Query: 8 APKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNI 67
A KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE +
Sbjct: 7 AQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66
Query: 68 KSKTRKALGTIMLKGDNITLIQNLN 92
K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 67 KTKSRKQLGRIMLKGDNITLLQSVS 91
>UNIPROTKB|P62303 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9031 "Gallus gallus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005683 "U7 snRNP" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K11097 CTD:6635 HOVERGEN:HBG003229 OrthoDB:EOG4DBTGC
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 OMA:VQIWLYE
EMBL:X65702 EMBL:L19064 IPI:IPI00587414 RefSeq:NP_990581.1
UniGene:Gga.23395 ProteinModelPortal:P62303 SMR:P62303
MINT:MINT-124835 STRING:P62303 PRIDE:P62303
Ensembl:ENSGALT00000000190 GeneID:396180 KEGG:gga:396180
InParanoid:P62303 NextBio:20816234 Uniprot:P62303
Length = 92
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 62/83 (74%), Positives = 76/83 (91%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE + K+
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
K+RK LG IMLKGDNITL+Q+++
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSVS 91
>UNIPROTKB|A4FUI2 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9913 "Bos taurus" [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K11097 EMBL:BC114915
IPI:IPI00845188 RefSeq:NP_001076928.1 UniGene:Bt.36560
ProteinModelPortal:A4FUI2 SMR:A4FUI2 STRING:A4FUI2 PRIDE:A4FUI2
GeneID:531493 KEGG:bta:531493 CTD:6635 HOVERGEN:HBG003229
InParanoid:A4FUI2 OrthoDB:EOG4DBTGC NextBio:20875471
PANTHER:PTHR11193 Uniprot:A4FUI2
Length = 92
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 62/83 (74%), Positives = 76/83 (91%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE + K+
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
K+RK LG IMLKGDNITL+Q+++
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSVS 91
>UNIPROTKB|P62304 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=NAS]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IDA] [GO:0005683 "U7 snRNP" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0000387 "spliceosomal snRNP assembly" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR027078
INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005654 Reactome:REACT_1675
EMBL:CH471067 GO:GO:0003723 GO:GO:0000387 GO:GO:0034660
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Reactome:REACT_1788 GO:GO:0000245 GO:GO:0006369 Reactome:REACT_78
GO:GO:0005689 PDB:3S6N PDBsum:3S6N Pfam:PF01423 GO:GO:0008334
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K11097 PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1 PDB:3PGW
PDBsum:2Y9A PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D PDBsum:3CW1
PDBsum:3PGW CTD:6635 HOVERGEN:HBG003229 OrthoDB:EOG4DBTGC
PANTHER:PTHR11193 OMA:VQIWLYE EMBL:M37716 EMBL:M15919 EMBL:X12466
EMBL:AK312130 EMBL:BC002639 EMBL:BC090951 EMBL:M21258 EMBL:M21253
IPI:IPI00029266 PIR:A32127 RefSeq:NP_003085.1 UniGene:Hs.334612
UniGene:Hs.654418 ProteinModelPortal:P62304 SMR:P62304
DIP:DIP-31220N IntAct:P62304 MINT:MINT-225773 STRING:P62304
PhosphoSite:P62304 DMDM:61237380 PaxDb:P62304 PRIDE:P62304
DNASU:6635 Ensembl:ENST00000414487 GeneID:6635 KEGG:hsa:6635
UCSC:uc001hai.3 GeneCards:GC01P203834 HGNC:HGNC:11161 MIM:128260
neXtProt:NX_P62304 PharmGKB:PA36002 InParanoid:P62304 ChiTaRS:SNRPE
EvolutionaryTrace:P62304 GenomeRNAi:6635 NextBio:25849
ArrayExpress:P62304 Bgee:P62304 CleanEx:HS_SNRPE
Genevestigator:P62304 GermOnline:ENSG00000182004 Uniprot:P62304
Length = 92
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 62/83 (74%), Positives = 76/83 (91%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE + K+
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
K+RK LG IMLKGDNITL+Q+++
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSVS 91
>UNIPROTKB|I3LDW9 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9823 "Sus scrofa" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 OMA:VQIWLYE EMBL:FP312914
EMBL:FP565233 ProteinModelPortal:I3LDW9 SMR:I3LDW9 PRIDE:I3LDW9
Ensembl:ENSSSCT00000023057 Uniprot:I3LDW9
Length = 92
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 62/83 (74%), Positives = 76/83 (91%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE + K+
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
K+RK LG IMLKGDNITL+Q+++
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSVS 91
>MGI|MGI:98346 [details] [associations]
symbol:Snrpe "small nuclear ribonucleoprotein E" species:10090
"Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=ISO] [GO:0005689
"U12-type spliceosomal complex" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR027078
MGI:MGI:98346 INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005689 Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649
SMART:SM00651 KO:K11097 CTD:6635 HOVERGEN:HBG003229
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 OMA:VQIWLYE
EMBL:X65703 EMBL:X65704 EMBL:AK019462 EMBL:BC008262 EMBL:BC051207
EMBL:BC055765 IPI:IPI00133955 PIR:I48778 RefSeq:NP_033253.1
UniGene:Mm.249110 ProteinModelPortal:P62305 SMR:P62305
PhosphoSite:P62305 PRIDE:P62305 Ensembl:ENSMUST00000166915
GeneID:20643 KEGG:mmu:20643 UCSC:uc007cql.2 NextBio:299051
Bgee:P62305 CleanEx:MM_SNRPE Genevestigator:P62305 Uniprot:P62305
Length = 92
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 62/83 (74%), Positives = 76/83 (91%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE + K+
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
K+RK LG IMLKGDNITL+Q+++
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSVS 91
>RGD|2321675 [details] [associations]
symbol:Snrpe "small nuclear ribonucleoprotein polypeptide E"
species:10116 "Rattus norvegicus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA;ISO]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
InterPro:IPR027078 RGD:2321675 INTERPRO:IPR001163
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K11097 OrthoDB:EOG4DBTGC PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 OMA:VQIWLYE IPI:IPI00198418
RefSeq:XP_001064438.1 RefSeq:XP_002727191.1
Ensembl:ENSRNOT00000042614 GeneID:685587 KEGG:rno:685587 CTD:685587
NextBio:730016 Uniprot:D3ZSP1
Length = 92
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 62/83 (74%), Positives = 76/83 (91%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ AEE + K+
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
K+RK LG IMLKGDNITL+Q+++
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSVS 91
>ZFIN|ZDB-GENE-040426-1112 [details] [associations]
symbol:snrpe "small nuclear ribonucleoprotein
polypeptide E" species:7955 "Danio rerio" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR027078
INTERPRO:IPR001163 ZFIN:ZDB-GENE-040426-1112 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K11097 CTD:6635 HOVERGEN:HBG003229
OrthoDB:EOG4DBTGC PANTHER:PTHR11193 GeneTree:ENSGT00390000012818
HOGENOM:HOG000223543 OMA:VQIWLYE EMBL:BC049062 IPI:IPI00507764
RefSeq:NP_957298.1 UniGene:Dr.117027 ProteinModelPortal:Q7ZUG0
STRING:Q7ZUG0 PRIDE:Q7ZUG0 Ensembl:ENSDART00000050296 GeneID:393979
KEGG:dre:393979 InParanoid:Q7ZUG0 NextBio:20814949 Bgee:Q7ZUG0
Uniprot:Q7ZUG0
Length = 92
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 61/83 (73%), Positives = 75/83 (90%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNRSR+ +WLYE VN+RIEG I+GFDEYMN+VL+ AEE ++K+
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKT 68
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
K RK LG IMLKGDNITL+Q+++
Sbjct: 69 KNRKPLGRIMLKGDNITLLQSVS 91
>RGD|2318883 [details] [associations]
symbol:LOC100362099 "small nuclear ribonucleoprotein polypeptide
E-like" species:10116 "Rattus norvegicus" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] InterPro:IPR027078 RGD:2318883
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 OrthoDB:EOG4DBTGC
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 OMA:PPINCIY
IPI:IPI00368169 RefSeq:XP_002728814.1 RefSeq:XP_003753347.1
Ensembl:ENSRNOT00000040164 GeneID:100362099 KEGG:rno:100362099
UCSC:RGD:2318883 Uniprot:D4A8M5
Length = 92
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 61/83 (73%), Positives = 76/83 (91%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN++IEG I+GFDEYMN+VL+ AEE + K+
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
K+RK LG IMLKGDNITL+Q+++
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSVS 91
>RGD|2319339 [details] [associations]
symbol:LOC100361838 "small nuclear ribonucleoprotein E-like"
species:10116 "Rattus norvegicus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] InterPro:IPR027078 RGD:2319339 INTERPRO:IPR001163
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 OrthoDB:EOG4DBTGC PANTHER:PTHR11193 OMA:INIIFRY
IPI:IPI00363837 RefSeq:XP_001065908.1 Ensembl:ENSRNOT00000043934
GeneID:360844 KEGG:rno:360844 CTD:360844 NextBio:674328
Uniprot:D4AAS3
Length = 92
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 61/83 (73%), Positives = 76/83 (91%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE VN+RI+G I+GFDEYMN+VL+ AEE + K+
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNIRIKGCIIGFDEYMNLVLDDAEEIHSKT 68
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
K+RK LG IMLKGDNITL+Q+++
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSVS 91
>UNIPROTKB|F1ME11 [details] [associations]
symbol:LOC100296197 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR027078
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 OMA:VQIWLYE EMBL:DAAA02072295
IPI:IPI00905250 Ensembl:ENSBTAT00000057036 Uniprot:F1ME11
Length = 91
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 61/83 (73%), Positives = 74/83 (89%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNRS +Q+WLYE VN+RIEG I+GFDEY N+VL+ AEE + K+
Sbjct: 8 KVQKVMVQPINLIFRYLQNRSHIQVWLYEQVNMRIEGCIIGFDEYRNLVLDDAEEIHSKT 67
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
K+RK LG IMLKGDNITLIQ+++
Sbjct: 68 KSRKQLGRIMLKGDNITLIQSVS 90
>UNIPROTKB|J9P098 [details] [associations]
symbol:LOC100855941 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 PANTHER:PTHR11193 GeneTree:ENSGT00390000012818
OMA:VQIWLYE EMBL:AAEX03000616 Ensembl:ENSCAFT00000003298
Uniprot:J9P098
Length = 92
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 59/83 (71%), Positives = 76/83 (91%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNRSR+Q+WLYE +N+RIEG I+GFDEYM++VL+ A+E + K+
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIQVWLYEQINMRIEGCIIGFDEYMSLVLDDAKEIHSKT 68
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
K+RK LG IMLKGDNITL+Q+++
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSVS 91
>UNIPROTKB|E1BHK8 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9913 "Bos taurus" [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 EMBL:DAAA02049203 IPI:IPI00690390
Ensembl:ENSBTAT00000022848 OMA:PPINCIY NextBio:20929647
Uniprot:E1BHK8
Length = 92
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 59/83 (71%), Positives = 74/83 (89%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQNRSR+++WLYE VN+R EG I+GFDE MN+VL+ AEE + K+
Sbjct: 9 KVQKVMVQPINLIFRYLQNRSRIRVWLYEQVNMRTEGSIIGFDECMNLVLDDAEEIHSKT 68
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
K+RK LG IMLKGDNITL+Q+++
Sbjct: 69 KSRKQLGRIMLKGDNITLLQSVS 91
>TAIR|locus:2118781 [details] [associations]
symbol:AT4G30330 "AT4G30330" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005829 "cytosol"
evidence=RCA] [GO:0016925 "protein sumoylation" evidence=RCA]
InterPro:IPR027078 INTERPRO:IPR001163 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003676 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:O26745 eggNOG:COG1958 KO:K11097
PANTHER:PTHR11193 HOGENOM:HOG000223543 OMA:VQIWLYE EMBL:AY087756
EMBL:BT024534 EMBL:AK175112 EMBL:AK175313 EMBL:AK176788
IPI:IPI00542865 RefSeq:NP_567844.1 UniGene:At.31841
ProteinModelPortal:Q8LAK5 SMR:Q8LAK5 IntAct:Q8LAK5 STRING:Q8LAK5
PaxDb:Q8LAK5 PRIDE:Q8LAK5 EnsemblPlants:AT4G30330.1 GeneID:829156
KEGG:ath:AT4G30330 TAIR:At4g30330 InParanoid:Q8LAK5
PhylomeDB:Q8LAK5 ProtClustDB:CLSN2683057 Genevestigator:Q8LAK5
Uniprot:Q8LAK5
Length = 88
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 57/81 (70%), Positives = 70/81 (86%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQ++M QPINLIFRFLQ+++R+QIWL+E +LRIEG I GFDEYMN+VL+ AEE +IK
Sbjct: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKK 64
Query: 70 KTRKALGTIMLKGDNITLIQN 90
KTRK LG I+LKGDNITL+ N
Sbjct: 65 KTRKPLGRILLKGDNITLMMN 85
>TAIR|locus:2053989 [details] [associations]
symbol:AT2G18740 "AT2G18740" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003676 GO:GO:0030529
EMBL:AC005724 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HSSP:O26745 KO:K11097
PANTHER:PTHR11193 HOGENOM:HOG000223543 OMA:PPINCIY
ProtClustDB:CLSN2683057 EMBL:AY086369 EMBL:BT005662 EMBL:AK118809
IPI:IPI00523358 PIR:A84568 RefSeq:NP_179464.1 UniGene:At.39949
ProteinModelPortal:Q9ZV45 SMR:Q9ZV45 IntAct:Q9ZV45 STRING:Q9ZV45
PRIDE:Q9ZV45 EnsemblPlants:AT2G18740.1 GeneID:816389
KEGG:ath:AT2G18740 TAIR:At2g18740 InParanoid:Q9ZV45
PhylomeDB:Q9ZV45 ArrayExpress:Q9ZV45 Genevestigator:Q9ZV45
Uniprot:Q9ZV45
Length = 88
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 56/81 (69%), Positives = 69/81 (85%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQ++M QPINLIFRFLQ+++R+QIWL+E +LRIEG I GFDEYMN+VL+ AEE +IK
Sbjct: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKK 64
Query: 70 KTRKALGTIMLKGDNITLIQN 90
TRK LG I+LKGDNITL+ N
Sbjct: 65 NTRKPLGRILLKGDNITLMMN 85
>UNIPROTKB|J9NSG1 [details] [associations]
symbol:J9NSG1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR027078 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 EMBL:AAEX03005975
Ensembl:ENSCAFT00000028242 OMA:CLHRITL Uniprot:J9NSG1
Length = 92
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 56/80 (70%), Positives = 72/80 (90%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+ QNRSR+Q+WLY+ VN++IEG I+GF EYM++VL+ A+E++ K+
Sbjct: 9 KVQKVMVQPINLIFRYWQNRSRIQMWLYKQVNMQIEGCIIGFVEYMDLVLDDAKEFHSKT 68
Query: 70 KTRKALGTIMLKGDNITLIQ 89
K+RK LG IMLKGDNITL+Q
Sbjct: 69 KSRKQLGWIMLKGDNITLLQ 88
>WB|WBGene00004919 [details] [associations]
symbol:snr-6 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0032940
"secretion by cell" evidence=IMP] [GO:0018996 "molting cycle,
collagen and cuticulin-based cuticle" evidence=IMP] [GO:0040027
"negative regulation of vulval development" evidence=IMP]
[GO:0006997 "nucleus organization" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0009792
GO:GO:0040007 GO:GO:0006915 GO:GO:0002119 GO:GO:0032940
GO:GO:0008380 GO:GO:0018996 GO:GO:0006397 GO:GO:0040011
GO:GO:0003723 GO:GO:0007281 EMBL:Z98866 GO:GO:0040027
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006997 GO:GO:0043186
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K11097 PANTHER:PTHR11193 PIR:T27041 RefSeq:NP_499620.1
UniGene:Cel.9740 ProteinModelPortal:Q9XTU6 SMR:Q9XTU6
DIP:DIP-24866N IntAct:Q9XTU6 MINT:MINT-1060547 STRING:Q9XTU6
PaxDb:Q9XTU6 EnsemblMetazoa:Y49E10.15 GeneID:176668
KEGG:cel:CELE_Y49E10.15 UCSC:Y49E10.15 CTD:176668
WormBase:Y49E10.15 GeneTree:ENSGT00390000012818
HOGENOM:HOG000223543 InParanoid:Q9XTU6 OMA:VQIWLYE NextBio:893536
Uniprot:Q9XTU6
Length = 90
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 54/79 (68%), Positives = 69/79 (87%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K+ KVMVQP+NLIFR+LQNR+RVQIWLYE+V R+EG+I+GFDE+MN+V + AEE N+K+
Sbjct: 5 KLNKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKT 64
Query: 70 KTRKALGTIMLKGDNITLI 88
K R +G I+LKGDNITLI
Sbjct: 65 KGRNKIGRILLKGDNITLI 83
>UNIPROTKB|J9PAB3 [details] [associations]
symbol:J9PAB3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR027078 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 EMBL:AAEX03005679
Ensembl:ENSCAFT00000021768 OMA:INIIFRY Uniprot:J9PAB3
Length = 91
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 57/83 (68%), Positives = 73/83 (87%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K+QKVMVQ IN+IFR+LQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VL+ A E + K+
Sbjct: 9 KLQKVMVQSINIIFRYLQNRSRIQVWLYEPVNMRIEGCIIGFDEYMNLVLDDAVEIHSKT 68
Query: 70 KTRKALGTIMLKGDNITLIQNLN 92
K+RK LG IMLKGD ITL+Q+++
Sbjct: 69 KSRKQLGWIMLKGD-ITLLQSVS 90
>UNIPROTKB|F1N150 [details] [associations]
symbol:F1N150 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR027078 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 EMBL:DAAA02057271
IPI:IPI00826986 Ensembl:ENSBTAT00000011044 OMA:IFRCLQN
Uniprot:F1N150
Length = 92
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 55/82 (67%), Positives = 69/82 (84%)
Query: 11 VQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSK 70
VQK VQPINLIFR LQNRSR+Q+WLYE VN+ EG +GFDEYMN+VL+ AE+ + K+K
Sbjct: 10 VQKGQVQPINLIFRCLQNRSRIQVWLYEQVNMWTEGCTIGFDEYMNLVLDDAEDIHSKTK 69
Query: 71 TRKALGTIMLKGDNITLIQNLN 92
+RK LG IMLKGDNITL+Q+++
Sbjct: 70 SRKQLGRIMLKGDNITLLQSVS 91
>GENEDB_PFALCIPARUM|MAL13P1.253 [details] [associations]
symbol:MAL13P1.253 "small nuclear
ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0006396
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AL844509 GO:GO:0005732
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 KO:K11097
PANTHER:PTHR11193 HOGENOM:HOG000223543 OMA:VQIWLYE
RefSeq:XP_001350215.1 ProteinModelPortal:Q8IDJ7
EnsemblProtists:MAL13P1.253:mRNA GeneID:813814 KEGG:pfa:MAL13P1.253
EuPathDB:PlasmoDB:PF3D7_1350200 ProtClustDB:PTZ00138 Uniprot:Q8IDJ7
Length = 93
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 50/86 (58%), Positives = 66/86 (76%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K+QK+M QPIN IFRF N++ VQIWLY+ ++RIEG ILGFDEYMN+VL+ +E ++K
Sbjct: 7 KLQKIMTQPINQIFRFFTNKTVVQIWLYDKPDMRIEGIILGFDEYMNMVLDQTKEISVKK 66
Query: 70 KTRKALGTIMLKGDNITLIQNLNPDE 95
T+K LG I+LKGD ITLI + +E
Sbjct: 67 NTKKELGKILLKGDTITLIMEVKNEE 92
>UNIPROTKB|Q8IDJ7 [details] [associations]
symbol:MAL13P1.253 "Small nuclear ribonucleoprotein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISS]
[GO:0006396 "RNA processing" evidence=ISS] InterPro:IPR027078
INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0006396 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AL844509 GO:GO:0005732 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 KO:K11097 PANTHER:PTHR11193
HOGENOM:HOG000223543 OMA:VQIWLYE RefSeq:XP_001350215.1
ProteinModelPortal:Q8IDJ7 EnsemblProtists:MAL13P1.253:mRNA
GeneID:813814 KEGG:pfa:MAL13P1.253 EuPathDB:PlasmoDB:PF3D7_1350200
ProtClustDB:PTZ00138 Uniprot:Q8IDJ7
Length = 93
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 50/86 (58%), Positives = 66/86 (76%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
K+QK+M QPIN IFRF N++ VQIWLY+ ++RIEG ILGFDEYMN+VL+ +E ++K
Sbjct: 7 KLQKIMTQPINQIFRFFTNKTVVQIWLYDKPDMRIEGIILGFDEYMNMVLDQTKEISVKK 66
Query: 70 KTRKALGTIMLKGDNITLIQNLNPDE 95
T+K LG I+LKGD ITLI + +E
Sbjct: 67 NTKKELGKILLKGDTITLIMEVKNEE 92
>UNIPROTKB|F1LYH0 [details] [associations]
symbol:F1LYH0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
InterPro:IPR027078 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
PANTHER:PTHR11193 IPI:IPI00568830 Ensembl:ENSRNOT00000049351
OMA:IAFNEYM Uniprot:F1LYH0
Length = 92
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 50/76 (65%), Positives = 63/76 (82%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
+VQKV VQ I+LIFR LQNRSR+Q+W YE VN+RIEG I+ F+EYMN+VL+ AEE + K+
Sbjct: 9 RVQKVPVQTISLIFRHLQNRSRIQVWPYEQVNMRIEGCIIAFNEYMNLVLDGAEEIHSKT 68
Query: 70 KTRKALGTIMLKGDNI 85
K RK LG IML+GD+I
Sbjct: 69 KPRKQLGQIMLQGDSI 84
>DICTYBASE|DDB_G0302414 [details] [associations]
symbol:snrpE "small nuclear ribonucleoprotein E"
species:44689 "Dictyostelium discoideum" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISS] [GO:0005685 "U1 snRNP" evidence=ISS] [GO:0000375 "RNA
splicing, via transesterification reactions" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR027078
dictyBase:DDB_G0302414 INTERPRO:IPR001163 GenomeReviews:CM000154_GR
GO:GO:0003676 EMBL:AAFI02000109 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 GO:GO:0005685 KO:K11097 PANTHER:PTHR11193 OMA:VQIWLYE
RefSeq:XP_002649120.1 EnsemblProtists:DDB0302415 GeneID:8626537
KEGG:ddi:DDB_G0302414 Uniprot:C7G054
Length = 92
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 44/77 (57%), Positives = 63/77 (81%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
+ VM++PI LIF+FL ++ VQI L+EN ++RI+G I+G DEYMN+VL++A E +IK KT
Sbjct: 7 KSVMIKPITLIFKFLTQKTEVQIMLFENTDIRIQGVIIGLDEYMNLVLDNASELSIKKKT 66
Query: 72 RKALGTIMLKGDNITLI 88
+K LG I+LKGDNI+L+
Sbjct: 67 KKPLGQILLKGDNISLV 83
>POMBASE|SPBC11G11.06c [details] [associations]
symbol:sme1 "Sm snRNP core protein Sme1" species:4896
"Schizosaccharomyces pombe" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IC] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] InterPro:IPR027078 PomBase:SPBC11G11.06c
INTERPRO:IPR001163 GO:GO:0005829 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 GO:GO:0005685 GO:GO:0000395 KO:K11097
PANTHER:PTHR11193 HOGENOM:HOG000223543 OMA:VQIWLYE PIR:T39333
RefSeq:NP_595724.1 ProteinModelPortal:Q9USZ3 IntAct:Q9USZ3
STRING:Q9USZ3 EnsemblFungi:SPBC11G11.06c.1 GeneID:2539607
KEGG:spo:SPBC11G11.06c OrthoDB:EOG49GPSD NextBio:20800764
Uniprot:Q9USZ3
Length = 84
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 46/83 (55%), Positives = 63/83 (75%)
Query: 7 MAPKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN 66
M+ +VQKVM+ PIN IF+ LQ + V IWL+E ++R++G I GFDE+MNIVL+ A + +
Sbjct: 1 MSGRVQKVMIPPINFIFKLLQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVD 60
Query: 67 IKSKTRKALGTIMLKGDNITLIQ 89
K+ R+ LG I+LKGDNITLIQ
Sbjct: 61 AKNNKRE-LGRILLKGDNITLIQ 82
>ASPGD|ASPL0000007577 [details] [associations]
symbol:AN6735 species:162425 "Emericella nidulans"
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005682 "U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0003676
EMBL:BN001301 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR11193
HOGENOM:HOG000223543 OMA:VQIWLYE EnsemblFungi:CADANIAT00007528
Uniprot:C8V1X5
Length = 94
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 42/82 (51%), Positives = 59/82 (71%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKT 71
+K ++ PI+ IF+ LQ RS V IWLYE + RIEG I GFDE+MN+V++ A E + +K+
Sbjct: 10 RKTLLAPIHFIFKLLQQRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVIDDAVEVRLATKS 69
Query: 72 ----RKALGTIMLKGDNITLIQ 89
R+ LG I+LKGDN++LIQ
Sbjct: 70 EEEKRRPLGQILLKGDNVSLIQ 91
>UNIPROTKB|G4MSI0 [details] [associations]
symbol:MGG_01450 "Sm snRNP core protein Sme1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR027078
INTERPRO:IPR001163 EMBL:CM001232 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 KO:K11097
PANTHER:PTHR11193 RefSeq:XP_003714403.1 ProteinModelPortal:G4MSI0
EnsemblFungi:MGG_01450T0 GeneID:2679702 KEGG:mgr:MGG_01450
Uniprot:G4MSI0
Length = 95
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 43/85 (50%), Positives = 61/85 (71%)
Query: 12 QKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN--IKS 69
+K+++ PIN IF+ LQ+ + V IWLYE + +RIEG I GFDE+MN+V++ A E K
Sbjct: 10 RKILLPPINCIFKLLQSHATVSIWLYEQLGIRIEGKIRGFDEFMNLVIDDAIEVKQITKD 69
Query: 70 KT---RKALGTIMLKGDNITLIQNL 91
T R+ LG I+LKGDN++LIQ+L
Sbjct: 70 NTEEKRRPLGQILLKGDNVSLIQSL 94
>RGD|1564726 [details] [associations]
symbol:Zfp341 "zinc finger protein 341" species:10116 "Rattus
norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] Pfam:PF00096
InterPro:IPR007087 InterPro:IPR015880 InterPro:IPR027078
PROSITE:PS50157 SMART:SM00355 RGD:1564726 INTERPRO:IPR001163
GO:GO:0008270 GO:GO:0005622 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 PANTHER:PTHR11193 GeneTree:ENSGT00390000000546
EMBL:AY539896 IPI:IPI00421412 UniGene:Rn.198660 UniGene:Rn.202389
Ensembl:ENSRNOT00000047286 UCSC:RGD:1564726 HOGENOM:HOG000203964
NextBio:640958 Genevestigator:Q6QI63 Uniprot:Q6QI63
Length = 428
Score = 218 (81.8 bits), Expect = 2.3e-17, P = 2.3e-17
Identities = 49/85 (57%), Positives = 61/85 (71%)
Query: 10 KVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKS 69
KVQKVMVQPINLIFR+LQ+ SR+Q+WL E V+ +IEG I+GFDEYMN+V + AEE I S
Sbjct: 9 KVQKVMVQPINLIFRYLQSGSRIQVWLCEQVDAQIEGCIIGFDEYMNLVSDDAEE--IHS 66
Query: 70 KTRKALGTIMLKGDNITLIQNLNPD 94
KT G + K ++LI PD
Sbjct: 67 KTN---GPLKFK---VSLIHRQAPD 85
>SGD|S000005685 [details] [associations]
symbol:SME1 "Core Sm protein Sm E" species:4932
"Saccharomyces cerevisiae" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA;IPI] [GO:0005682 "U5 snRNP" evidence=IDA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0071004
"U2-type prespliceosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] InterPro:IPR027078
SGD:S000005685 INTERPRO:IPR001163 GO:GO:0005737 EMBL:BK006948
GO:GO:0005682 GO:GO:0003723 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0071004 EMBL:U55020
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
GO:GO:0005685 RefSeq:NP_014804.3 GeneID:854332 KEGG:sce:YOR161C
RefSeq:NP_014802.3 GeneID:854330 KEGG:sce:YOR159C KO:K11097
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 HOGENOM:HOG000223543
OMA:VQIWLYE OrthoDB:EOG49GPSD EMBL:X92449 EMBL:Z75067 EMBL:AY558029
PIR:S67047 ProteinModelPortal:Q12330 SMR:Q12330 DIP:DIP-1633N
IntAct:Q12330 MINT:MINT-396862 STRING:Q12330 PaxDb:Q12330
EnsemblFungi:YOR159C CYGD:YOR159c NextBio:976384
Genevestigator:Q12330 GermOnline:YOR159C Uniprot:Q12330
Length = 94
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 46/90 (51%), Positives = 61/90 (67%)
Query: 7 MAPKVQ-KVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEY 65
M+ KV+ K MV PIN IF FLQ ++ V IWL+E + +RI+G I+GFDE+MN+V++ A E
Sbjct: 1 MSNKVKTKAMVPPINCIFNFLQQQTPVTIWLFEQIGIRIKGKIVGFDEFMNVVIDEAVEI 60
Query: 66 NIKSKTRKA-------LGTIMLKGDNITLI 88
+ S K LG I+LKGDNITLI
Sbjct: 61 PVNSADGKEDVEKGTPLGKILLKGDNITLI 90
>UNIPROTKB|A6NHK2 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9606 "Homo sapiens" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 EMBL:AC114402
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 PANTHER:PTHR11193 HGNC:HGNC:11161 ChiTaRS:SNRPE
EMBL:AC118554 IPI:IPI00647942 ProteinModelPortal:A6NHK2 SMR:A6NHK2
STRING:A6NHK2 PRIDE:A6NHK2 Ensembl:ENST00000367208
HOGENOM:HOG000293268 ArrayExpress:A6NHK2 Bgee:A6NHK2 Uniprot:A6NHK2
Length = 52
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 34/51 (66%), Positives = 45/51 (88%)
Query: 42 LRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
+RIEG I+GFDEYMN+VL+ AEE + K+K+RK LG IMLKGDNITL+Q+++
Sbjct: 1 MRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 51
>GENEDB_PFALCIPARUM|PF14_0411 [details] [associations]
symbol:PF14_0411 "small nuclear ribonuclear
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0003676 EMBL:AE014187 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005732 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12624 OMA:CIGSRIW ProtClustDB:CLSZ2431478 HOGENOM:HOG000223547
HSSP:Q8ZYG5 RefSeq:XP_001348585.1 ProteinModelPortal:Q8IL38
SMR:Q8IL38 EnsemblProtists:PF14_0411:mRNA GeneID:811993
KEGG:pfa:PF14_0411 EuPathDB:PlasmoDB:PF3D7_1443300 Uniprot:Q8IL38
Length = 101
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--LGTIMLKGDNITLI 88
+IW+ + I G ++GFDEY+N+VLE EY + +K + ++L G NIT++
Sbjct: 23 KIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTEYTYANNVKKVNKIKKLLLNGLNITIM 80
>UNIPROTKB|Q8IL38 [details] [associations]
symbol:PF14_0411 "Small nuclear ribonucleoprotein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0003676
EMBL:AE014187 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005732
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 KO:K12624 OMA:CIGSRIW
ProtClustDB:CLSZ2431478 HOGENOM:HOG000223547 HSSP:Q8ZYG5
RefSeq:XP_001348585.1 ProteinModelPortal:Q8IL38 SMR:Q8IL38
EnsemblProtists:PF14_0411:mRNA GeneID:811993 KEGG:pfa:PF14_0411
EuPathDB:PlasmoDB:PF3D7_1443300 Uniprot:Q8IL38
Length = 101
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--LGTIMLKGDNITLI 88
+IW+ + I G ++GFDEY+N+VLE EY + +K + ++L G NIT++
Sbjct: 23 KIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTEYTYANNVKKVNKIKKLLLNGLNITIM 80
>ASPGD|ASPL0000026389 [details] [associations]
symbol:AN5679 species:162425 "Emericella nidulans"
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005688 "U6 snRNP"
evidence=IEA] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] INTERPRO:IPR001163
GO:GO:0003676 EMBL:BN001305 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000223547 EnsemblFungi:CADANIAT00003386 Uniprot:C8VFR4
Length = 129
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 26/80 (32%), Positives = 45/80 (56%)
Query: 9 PKVQKVMVQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIK 68
PK+ ++ P+ LI + + +R IW+ + G +LGFD+Y+N+VLE E++
Sbjct: 45 PKMASQLL-PLELIDKCVGSR----IWIIMKNDKEFSGTLLGFDDYVNMVLEDVTEFDYT 99
Query: 69 SKTRKALGTIMLKGDNITLI 88
K L I+L G+NI ++
Sbjct: 100 GAQVK-LPKILLNGNNICML 118
>WB|WBGene00003079 [details] [associations]
symbol:lsm-5 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] INTERPRO:IPR001163 GO:GO:0009792
GO:GO:0006915 GO:GO:0000003 GO:GO:0042127 GO:GO:0040020
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z81071 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HSSP:O26745 eggNOG:COG1958
GeneTree:ENSGT00390000001455 KO:K12624 OMA:CIGSRIW
HOGENOM:HOG000223547 PIR:T21508 RefSeq:NP_506870.1
ProteinModelPortal:O18694 SMR:O18694 IntAct:O18694 STRING:O18694
PaxDb:O18694 EnsemblMetazoa:F28F8.3.1 EnsemblMetazoa:F28F8.3.2
GeneID:180047 KEGG:cel:CELE_F28F8.3 UCSC:F28F8.3.1 CTD:180047
WormBase:F28F8.3 InParanoid:O18694 NextBio:907884 Uniprot:O18694
Length = 91
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN--IKSKTRKAL 75
P+ LI + + ++ IW+ + I G + GFD+Y+N+VLE EY K L
Sbjct: 14 PLELIDKCIGSK----IWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKL 69
Query: 76 GTIMLKGDNITLI 88
TI+L G++IT++
Sbjct: 70 DTILLNGNHITML 82
>UNIPROTKB|O18694 [details] [associations]
symbol:lsm-5 "Protein LSM-5" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
INTERPRO:IPR001163 GO:GO:0009792 GO:GO:0006915 GO:GO:0000003
GO:GO:0042127 GO:GO:0040020 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:Z81071 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O26745 eggNOG:COG1958 GeneTree:ENSGT00390000001455 KO:K12624
OMA:CIGSRIW HOGENOM:HOG000223547 PIR:T21508 RefSeq:NP_506870.1
ProteinModelPortal:O18694 SMR:O18694 IntAct:O18694 STRING:O18694
PaxDb:O18694 EnsemblMetazoa:F28F8.3.1 EnsemblMetazoa:F28F8.3.2
GeneID:180047 KEGG:cel:CELE_F28F8.3 UCSC:F28F8.3.1 CTD:180047
WormBase:F28F8.3 InParanoid:O18694 NextBio:907884 Uniprot:O18694
Length = 91
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYN--IKSKTRKAL 75
P+ LI + + ++ IW+ + I G + GFD+Y+N+VLE EY K L
Sbjct: 14 PLELIDKCIGSK----IWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKL 69
Query: 76 GTIMLKGDNITLI 88
TI+L G++IT++
Sbjct: 70 DTILLNGNHITML 82
>ZFIN|ZDB-GENE-070822-23 [details] [associations]
symbol:zgc:171959 "zgc:171959" species:7955 "Danio
rerio" [GO:0003674 "molecular_function" evidence=ND]
INTERPRO:IPR001163 ZFIN:ZDB-GENE-070822-23 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 GeneTree:ENSGT00390000001455 HOVERGEN:HBG107310
KO:K12624 OMA:CIGSRIW OrthoDB:EOG48D0WX HOGENOM:HOG000223547
EMBL:BX571950 EMBL:BC150414 IPI:IPI00609349 RefSeq:NP_001093908.1
UniGene:Dr.117231 STRING:A7E2L8 Ensembl:ENSDART00000105903
GeneID:563948 KEGG:dre:563948 NextBio:20885150 Uniprot:A7E2L8
Length = 91
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P+ L+ + + SR+ I + +N + I G +LGFD+++N+VLE E+ I + R+ L
Sbjct: 14 PLELVDKCIG--SRIHI-VMKN-DKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 70 DQILLNGNNITML 82
>TAIR|locus:2061446 [details] [associations]
symbol:SNRNP-G "AT2G23930" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AC005170 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 EMBL:BT002035 EMBL:BT006498 EMBL:AY088256
IPI:IPI00541782 PIR:E84630 RefSeq:NP_179971.1 UniGene:At.27766
ProteinModelPortal:O82221 SMR:O82221 STRING:O82221 PRIDE:O82221
EnsemblPlants:AT2G23930.1 GeneID:816925 KEGG:ath:AT2G23930
GeneFarm:4625 TAIR:At2g23930 HOGENOM:HOG000223546 InParanoid:O82221
KO:K11099 OMA:DLFLNVV PhylomeDB:O82221 ProtClustDB:CLSN2683015
Genevestigator:O82221 GermOnline:AT2G23930 Uniprot:O82221
Length = 80
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 21/63 (33%), Positives = 40/63 (63%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
++QI L N N + G + GFD++MN+V+++ E N KT +G ++++G++I ++
Sbjct: 17 KLQIKL--NANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTD--IGMVVIRGNSIVTVEA 72
Query: 91 LNP 93
L P
Sbjct: 73 LEP 75
>TAIR|locus:2156589 [details] [associations]
symbol:SAD1 "SUPERSENSITIVE TO ABA AND DROUGHT 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009414 "response to water deprivation" evidence=IMP]
[GO:0009737 "response to abscisic acid stimulus" evidence=IMP]
INTERPRO:IPR001163 GO:GO:0009737 EMBL:CP002688 GO:GO:0009414
GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AB012242
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 KO:K12624 OMA:CIGSRIW
UniGene:At.49146 UniGene:At.6838 HSSP:O29885 EMBL:AY034896
EMBL:BT025700 IPI:IPI00538376 RefSeq:NP_199698.1
ProteinModelPortal:Q9FKB0 SMR:Q9FKB0 STRING:Q9FKB0 PRIDE:Q9FKB0
EnsemblPlants:AT5G48870.1 GeneID:834945 KEGG:ath:AT5G48870
TAIR:At5g48870 InParanoid:Q9FKB0 PhylomeDB:Q9FKB0
ProtClustDB:CLSN2686781 Genevestigator:Q9FKB0 Uniprot:Q9FKB0
Length = 88
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--LGTIMLKGDNIT-LIQ 89
+IW+ + + G + GFD Y+N+VLE EY I ++ R+ L I+L G+NI L+
Sbjct: 21 KIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVP 80
Query: 90 NLNPDE 95
+P++
Sbjct: 81 GGSPED 86
>UNIPROTKB|Q2HJH0 [details] [associations]
symbol:LSM5 "U6 snRNA-associated Sm-like protein LSm5"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
EMBL:BC105404 IPI:IPI00700036 RefSeq:NP_001040018.1
UniGene:Bt.43458 ProteinModelPortal:Q2HJH0 SMR:Q2HJH0 STRING:Q2HJH0
Ensembl:ENSBTAT00000003010 GeneID:615136 KEGG:bta:615136 CTD:23658
GeneTree:ENSGT00390000001455 HOVERGEN:HBG107310 InParanoid:Q2HJH0
KO:K12624 OMA:CIGSRIW OrthoDB:EOG48D0WX NextBio:20899463
Uniprot:Q2HJH0
Length = 91
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P+ L+ + + SR+ I + + I G +LGFD+++N+VLE E+ I + R+ L
Sbjct: 14 PLELVDKCIG--SRIHIVMKSDKE--IVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 70 DQILLNGNNITML 82
>UNIPROTKB|Q9Y4Y9 [details] [associations]
symbol:LSM5 "U6 snRNA-associated Sm-like protein LSm5"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
EMBL:AJ238097 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0043928 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 CTD:23658
HOVERGEN:HBG107310 KO:K12624 OMA:CIGSRIW OrthoDB:EOG48D0WX
EMBL:AF182291 EMBL:AC018641 EMBL:BC005938 EMBL:BF701546
IPI:IPI00220493 IPI:IPI00908769 RefSeq:NP_001124182.1
RefSeq:NP_001132971.1 RefSeq:NP_036454.1 UniGene:Hs.424908
ProteinModelPortal:Q9Y4Y9 SMR:Q9Y4Y9 DIP:DIP-31162N IntAct:Q9Y4Y9
STRING:Q9Y4Y9 PhosphoSite:Q9Y4Y9 DMDM:10720081 PaxDb:Q9Y4Y9
PRIDE:Q9Y4Y9 DNASU:23658 Ensembl:ENST00000409292
Ensembl:ENST00000409782 Ensembl:ENST00000409909
Ensembl:ENST00000409952 Ensembl:ENST00000410044
Ensembl:ENST00000450169 GeneID:23658 KEGG:hsa:23658 UCSC:uc003tct.2
GeneCards:GC07M032524 HGNC:HGNC:17162 HPA:HPA019054 MIM:607285
neXtProt:NX_Q9Y4Y9 PharmGKB:PA134881171 InParanoid:Q9Y4Y9
PhylomeDB:Q9Y4Y9 GenomeRNAi:23658 NextBio:46501 ArrayExpress:Q9Y4Y9
Bgee:Q9Y4Y9 CleanEx:HS_LSM5 Genevestigator:Q9Y4Y9
GermOnline:ENSG00000106355 Uniprot:Q9Y4Y9
Length = 91
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P+ L+ + + SR+ I + + I G +LGFD+++N+VLE E+ I + R+ L
Sbjct: 14 PLELVDKCIG--SRIHIVMKSDKE--IVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 70 DQILLNGNNITML 82
>MGI|MGI:1913623 [details] [associations]
symbol:Lsm5 "LSM5 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=ISO] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] MGI:MGI:1913623 INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 CTD:23658 GeneTree:ENSGT00390000001455
HOVERGEN:HBG107310 KO:K12624 OMA:CIGSRIW EMBL:AK009617
EMBL:AK011218 EMBL:BC048459 EMBL:BC061085 EMBL:BC132626
EMBL:BC132628 IPI:IPI00119813 RefSeq:NP_079796.1
RefSeq:XP_003946397.1 UniGene:Mm.25642 ProteinModelPortal:P62322
SMR:P62322 IntAct:P62322 PhosphoSite:P62322 PRIDE:P62322
Ensembl:ENSMUST00000170382 GeneID:100044729 GeneID:66373
KEGG:mmu:100044729 KEGG:mmu:66373 UCSC:uc009cbj.2 NextBio:458218
Bgee:P62322 Genevestigator:P62322 GermOnline:ENSMUSG00000054264
Uniprot:P62322
Length = 91
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P+ L+ + + SR+ I + + I G +LGFD+++N+VLE E+ I + R+ L
Sbjct: 14 PLELVDKCIG--SRIHIVMKSDKE--IVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 69
Query: 76 GTIMLKGDNITLI 88
I+L G+NIT++
Sbjct: 70 DQILLNGNNITML 82
>TAIR|locus:2080777 [details] [associations]
symbol:AT3G11500 "AT3G11500" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
INTERPRO:IPR001163 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0005730 GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AC008153 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:O29386 HOGENOM:HOG000223546 KO:K11099
ProtClustDB:CLSN2683015 EMBL:AY062818 EMBL:BT001203 IPI:IPI00542169
RefSeq:NP_187757.1 UniGene:At.27222 ProteinModelPortal:Q9CAX7
SMR:Q9CAX7 STRING:Q9CAX7 PRIDE:Q9CAX7 DNASU:820323
EnsemblPlants:AT3G11500.1 GeneID:820323 KEGG:ath:AT3G11500
TAIR:At3g11500 InParanoid:Q9CAX7 OMA:NIGMVEI PhylomeDB:Q9CAX7
ArrayExpress:Q9CAX7 Genevestigator:Q9CAX7 Uniprot:Q9CAX7
Length = 79
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 21/63 (33%), Positives = 40/63 (63%)
Query: 31 RVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQN 90
++QI L N N + G + GFD++MN+V+++ E N KT +G ++++G++I ++
Sbjct: 17 KLQIKL--NANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTD--IGMVVIRGNSIVTVEA 72
Query: 91 LNP 93
L P
Sbjct: 73 LEP 75
>UNIPROTKB|G4MRX5 [details] [associations]
symbol:MGG_02462 "U6 snRNA-associated Sm-like protein LSm5"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 EMBL:CM001231
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K12624 RefSeq:XP_003709256.1
ProteinModelPortal:G4MRX5 SMR:G4MRX5 EnsemblFungi:MGG_02462T0
GeneID:2681559 KEGG:mgr:MGG_02462 Uniprot:G4MRX5
Length = 82
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGT 77
P+ LI + + +R IW+ + G ++GFD+Y+N+VLE E++ K +
Sbjct: 7 PLELIDKCVGSR----IWVIMKGDKEFSGLLVGFDDYVNMVLEDVTEFDYSGNHTK-MSK 61
Query: 78 IMLKGDNITLI 88
I+L G+NI ++
Sbjct: 62 ILLNGNNICML 72
>GENEDB_PFALCIPARUM|MAL8P1.48 [details] [associations]
symbol:MAL8P1.48 "small nuclear
ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AL844507 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000223546 KO:K11099
OMA:DLFLNVV HSSP:O29885 RefSeq:XP_001349302.1
ProteinModelPortal:Q8IB57 EnsemblProtists:MAL8P1.48:mRNA
GeneID:2655346 KEGG:pfa:MAL8P1.48 EuPathDB:PlasmoDB:PF3D7_0822300
ProtClustDB:CLSZ2432380 Uniprot:Q8IB57
Length = 83
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 22/74 (29%), Positives = 47/74 (63%)
Query: 24 RFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGD 83
+F++ R +QI+L N N ++ G + G+D +MN+VL++ E IK + +G ++++G+
Sbjct: 16 KFMEKR--LQIYL--NGNRQVVGILRGYDTFMNLVLDNTME--IKKDEQIDIGVVVIRGN 69
Query: 84 NITLIQNLNPDEVK 97
+I+ + L+ +K
Sbjct: 70 SISYWECLDKVNIK 83
>FB|FBgn0035675 [details] [associations]
symbol:CG6610 species:7227 "Drosophila melanogaster"
[GO:0005688 "U6 snRNP" evidence=NAS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0005681 "spliceosomal
complex" evidence=ISS] INTERPRO:IPR001163 EMBL:AE014296
GO:GO:0005681 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O26745 eggNOG:COG1958 GeneTree:ENSGT00390000001455 KO:K12624
OMA:CIGSRIW EMBL:AY113521 RefSeq:NP_648022.1 UniGene:Dm.14483
SMR:Q9VRT7 IntAct:Q9VRT7 MINT:MINT-768745 STRING:Q9VRT7
EnsemblMetazoa:FBtr0077048 EnsemblMetazoa:FBtr0332059
EnsemblMetazoa:FBtr0332060 GeneID:38693 KEGG:dme:Dmel_CG6610
UCSC:CG6610-RA FlyBase:FBgn0035675 InParanoid:Q9VRT7
OrthoDB:EOG43TXC6 GenomeRNAi:38693 NextBio:809911 Uniprot:Q9VRT7
Length = 91
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 23/75 (30%), Positives = 45/75 (60%)
Query: 16 VQPINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA- 74
+ P+ L+ + + SR+ I + +N + + G +LGFD+++N++L+ EY R+
Sbjct: 13 LMPLELVDKCIG--SRIHI-IMKN-DKEMVGTLLGFDDFVNMLLDDVTEYENTPDGRRIT 68
Query: 75 -LGTIMLKGDNITLI 88
L I+L G+NIT++
Sbjct: 69 KLDQILLNGNNITML 83
>SGD|S000000948 [details] [associations]
symbol:LSM5 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA]
[GO:0005688 "U6 snRNP" evidence=IDA;TAS] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA;IPI]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=IPI] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=TAS]
SGD:S000000948 INTERPRO:IPR001163 GO:GO:0005730 GO:GO:0003723
EMBL:BK006939 GO:GO:0008033 GO:GO:0000956 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:U18917 GO:GO:0006364
GO:GO:0046540 GO:GO:0005732 GO:GO:0005688 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
GeneTree:ENSGT00390000001455 KO:K12624 OMA:CIGSRIW
HOGENOM:HOG000223547 OrthoDB:EOG4FN7TK EMBL:AY557783 PIR:S50649
RefSeq:NP_011073.1 ProteinModelPortal:P40089 SMR:P40089
DIP:DIP-1417N IntAct:P40089 MINT:MINT-383516 STRING:P40089
PaxDb:P40089 EnsemblFungi:YER146W GeneID:856889 KEGG:sce:YER146W
CYGD:YER146w NextBio:983290 Genevestigator:P40089
GermOnline:YER146W Uniprot:P40089
Length = 93
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 19/55 (34%), Positives = 35/55 (63%)
Query: 41 NLRIEGHILGFDEYMNIVLESAEEYNI----KSKTRKAL---GTIMLKGDNITLI 88
N EG ++GFD+++N++LE A E+ I +S+ K + G ++L G+NI ++
Sbjct: 27 NREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRMLLSGNNIAIL 81
>DICTYBASE|DDB_G0268716 [details] [associations]
symbol:lsm5 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0268716
INTERPRO:IPR001163 GenomeReviews:CM000150_GR GO:GO:0005730
EMBL:AAFI02000004 GO:GO:0003723 GO:GO:0006402 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HSSP:Q5CXX3 KO:K12624 OMA:CIGSRIW RefSeq:XP_646895.1
ProteinModelPortal:Q55EX5 SMR:Q55EX5 STRING:Q55EX5
EnsemblProtists:DDB0233383 GeneID:8616580 KEGG:ddi:DDB_G0268716
ProtClustDB:CLSZ2431478 Uniprot:Q55EX5
Length = 97
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 18 PINLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKA--L 75
P+ LI + + +R IW+ + G +LGFD Y+NI L+ EY + K L
Sbjct: 18 PLELIEKCIGSR----IWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYTPEGLKTVKL 73
Query: 76 GTIMLKGDNITLI 88
I+L G+++ L+
Sbjct: 74 DNILLNGNHVCLL 86
>FB|FBgn0261791 [details] [associations]
symbol:SmG "Small ribonucleoprotein particle protein SmG"
species:7227 "Drosophila melanogaster" [GO:0005634 "nucleus"
evidence=IDA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS;IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0000245 "spliceosomal complex assembly" evidence=ISS]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] INTERPRO:IPR001163
GO:GO:0007052 EMBL:AE014298 GO:GO:0003723 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K11099 GeneTree:ENSGT00510000046985 OMA:VVIMEPK
EMBL:AY070698 EMBL:AY113538 RefSeq:NP_001138209.1
RefSeq:NP_573139.1 UniGene:Dm.19721 ProteinModelPortal:Q9VXE0
SMR:Q9VXE0 DIP:DIP-20715N IntAct:Q9VXE0 MINT:MINT-288468
STRING:Q9VXE0 PaxDb:Q9VXE0 PRIDE:Q9VXE0 EnsemblMetazoa:FBtr0074377
EnsemblMetazoa:FBtr0112993 GeneID:32636 KEGG:dme:Dmel_CG9742
CTD:32636 FlyBase:FBgn0261791 InParanoid:Q9VXE0 OrthoDB:EOG4GXD4H
PhylomeDB:Q9VXE0 ChiTaRS:SAMD4A GenomeRNAi:32636 NextBio:779578
Bgee:Q9VXE0 GermOnline:CG9742 Uniprot:Q9VXE0
Length = 76
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 15/49 (30%), Positives = 32/49 (65%)
Query: 44 IEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
+ G + GFD +MN+VL+ E K T+ +G ++++G++I +++ L+
Sbjct: 27 VTGILRGFDPFMNVVLDDTVE-ECKDNTKNNIGMVVIRGNSIVMVEALD 74
>GENEDB_PFALCIPARUM|MAL8P1.9 [details] [associations]
symbol:MAL8P1.9 "u6 snRNA-associated sm-like
protein, putative" species:5833 "Plasmodium falciparum" [GO:0017070
"U6 snRNA binding" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] INTERPRO:IPR001163
GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0017070
GO:GO:0005732 EMBL:AL844507 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223549 KO:K12627 RefSeq:XP_002808886.1
ProteinModelPortal:C0H4Y9 EnsemblProtists:MAL8P1.9:mRNA
GeneID:2655440 KEGG:pfa:MAL8P1.9 EuPathDB:PlasmoDB:PF3D7_0829300
ProtClustDB:CLSZ2734129 Uniprot:C0H4Y9
Length = 95
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 25/77 (32%), Positives = 41/77 (53%)
Query: 19 INLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK-ALGT 77
IN I +L+N +I + N + G + GFD+ NI+L + E K K +LG
Sbjct: 4 IN-IESYLEN----EILVITNDSRIFTGKLKGFDQTTNIILGNCHERIYKESMEKISLGV 58
Query: 78 IMLKGDNITLIQNLNPD 94
+++GD +TLI ++ D
Sbjct: 59 YIIRGDTVTLIGEIDED 75
>UNIPROTKB|C0H4Y9 [details] [associations]
symbol:MAL8P1.9 "U6 snRNA-associated Sm-like protein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=ISS] [GO:0017070 "U6
snRNA binding" evidence=ISS] INTERPRO:IPR001163 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0017070 GO:GO:0005732
EMBL:AL844507 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000223549 KO:K12627 RefSeq:XP_002808886.1
ProteinModelPortal:C0H4Y9 EnsemblProtists:MAL8P1.9:mRNA
GeneID:2655440 KEGG:pfa:MAL8P1.9 EuPathDB:PlasmoDB:PF3D7_0829300
ProtClustDB:CLSZ2734129 Uniprot:C0H4Y9
Length = 95
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 25/77 (32%), Positives = 41/77 (53%)
Query: 19 INLIFRFLQNRSRVQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRK-ALGT 77
IN I +L+N +I + N + G + GFD+ NI+L + E K K +LG
Sbjct: 4 IN-IESYLEN----EILVITNDSRIFTGKLKGFDQTTNIILGNCHERIYKESMEKISLGV 58
Query: 78 IMLKGDNITLIQNLNPD 94
+++GD +TLI ++ D
Sbjct: 59 YIIRGDTVTLIGEIDED 75
>UNIPROTKB|G4NHA4 [details] [associations]
symbol:MGG_03895 "Small nuclear ribonucleoprotein F"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR016487
PIRSF:PIRSF006609 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0003676
GO:GO:0006396 GO:GO:0030529 EMBL:CM001236 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K11098 RefSeq:XP_003719981.1 ProteinModelPortal:G4NHA4
EnsemblFungi:MGG_03895T0 GeneID:2677482 KEGG:mgr:MGG_03895
Uniprot:G4NHA4
Length = 88
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 45 EGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLNPDE 95
+G ++ D YMNI L +A+EY I K LG I+++ +N+ +++ DE
Sbjct: 32 KGRLVSIDSYMNIQLSNAQEY-IDQKLEGDLGQILIRCNNVLWVRSAATDE 81
>POMBASE|SPBC4B4.05 [details] [associations]
symbol:smg1 "U4/U6 x U5 tri-snRNP complex Sm snRNP core
protein Smg1" species:4896 "Schizosaccharomyces pombe" [GO:0000395
"mRNA 5'-splice site recognition" evidence=IC] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IC] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=ISS]
PomBase:SPBC4B4.05 INTERPRO:IPR001163 GO:GO:0005829 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0003723
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 GO:GO:0005685
GO:GO:0000395 HOGENOM:HOG000223546 KO:K11099 OMA:DLFLNVV PIR:T40477
RefSeq:NP_596422.1 ProteinModelPortal:O74966 IntAct:O74966
STRING:O74966 EnsemblFungi:SPBC4B4.05.1 GeneID:2540855
KEGG:spo:SPBC4B4.05 OrthoDB:EOG4XWK7N NextBio:20801971
Uniprot:O74966
Length = 77
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 16/60 (26%), Positives = 40/60 (66%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQNLN 92
Q+++ N + ++ G + G+D ++NIVLE + E + + K +G++ ++G+++ +I+ L+
Sbjct: 16 QVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVK-IGSVAIRGNSVIMIETLD 74
>WB|WBGene00004920 [details] [associations]
symbol:snr-7 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0040027
"negative regulation of vulval development" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0043186 "P
granule" evidence=IDA] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0006915 GO:GO:0002119 GO:GO:0016246 GO:GO:0008380
GO:GO:0006397 GO:GO:0040011 GO:GO:0000003 GO:GO:0003723
GO:GO:0040027 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0043186
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
EMBL:FO081276 HOGENOM:HOG000223546 KO:K11099
GeneTree:ENSGT00510000046985 EMBL:AF303264 RefSeq:NP_491032.1
UniGene:Cel.19416 ProteinModelPortal:Q9N4G9 SMR:Q9N4G9
IntAct:Q9N4G9 STRING:Q9N4G9 PaxDb:Q9N4G9 EnsemblMetazoa:Y71F9B.4.1
EnsemblMetazoa:Y71F9B.4.2 GeneID:171834 KEGG:cel:CELE_Y71F9B.4
UCSC:Y71F9B.4 CTD:171834 WormBase:Y71F9B.4 InParanoid:Q9N4G9
OMA:VVIMEPK NextBio:872901 Uniprot:Q9N4G9
Length = 77
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 39 NVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKGDNITLIQ 89
N N R+ G + GFD +MN+V++ A EY K LG +++G+++ +++
Sbjct: 22 NGNRRVSGILRGFDPFMNMVIDEAVEYQ-KDGGSVNLGMTVIRGNSVVIME 71
>GENEDB_PFALCIPARUM|PF14_0146 [details] [associations]
symbol:PF14_0146 "ribonucleoprotein, putative"
species:5833 "Plasmodium falciparum" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] INTERPRO:IPR001163
GO:GO:0008380 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:P14678 KO:K11086 HOGENOM:HOG000188899
RefSeq:XP_001348319.1 ProteinModelPortal:Q8ILU8
EnsemblProtists:PF14_0146:mRNA GeneID:811727 KEGG:pfa:PF14_0146
EuPathDB:PlasmoDB:PF3D7_1414800 ProtClustDB:CLSZ2431968
Uniprot:Q8ILU8
Length = 201
Score = 91 (37.1 bits), Expect = 0.00039, P = 0.00039
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 30 SRVQIWLYENVNLRIE------GHILGFDEYMNIVLESAEEYN-IKSKT------RKALG 76
SR++ WL V + I G L +D +MNIVL AEE+ +KS+ ++ +G
Sbjct: 5 SRLETWLQYRVRVTISDTRYFVGTFLSYDRHMNIVLVDAEEFRKVKSQENSLKEIKRVVG 64
Query: 77 TIMLKGDNI 85
I+++G+NI
Sbjct: 65 LILIRGENI 73
>UNIPROTKB|Q8ILU8 [details] [associations]
symbol:PF14_0146 "Ribonucleoprotein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0005681 GO:GO:0003676
EMBL:AE014187 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HSSP:P14678 KO:K11086
HOGENOM:HOG000188899 RefSeq:XP_001348319.1
ProteinModelPortal:Q8ILU8 EnsemblProtists:PF14_0146:mRNA
GeneID:811727 KEGG:pfa:PF14_0146 EuPathDB:PlasmoDB:PF3D7_1414800
ProtClustDB:CLSZ2431968 Uniprot:Q8ILU8
Length = 201
Score = 91 (37.1 bits), Expect = 0.00039, P = 0.00039
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 30 SRVQIWLYENVNLRIE------GHILGFDEYMNIVLESAEEYN-IKSKT------RKALG 76
SR++ WL V + I G L +D +MNIVL AEE+ +KS+ ++ +G
Sbjct: 5 SRLETWLQYRVRVTISDTRYFVGTFLSYDRHMNIVLVDAEEFRKVKSQENSLKEIKRVVG 64
Query: 77 TIMLKGDNI 85
I+++G+NI
Sbjct: 65 LILIRGENI 73
>TAIR|locus:2080487 [details] [associations]
symbol:LSM6A "AT3G59810" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] INTERPRO:IPR001163
EMBL:CP002686 EMBL:AL138647 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:P54999 KO:K12625
OMA:YISTSTK ProtClustDB:CLSN2683093 EMBL:BT002850 EMBL:BT004433
IPI:IPI00517943 PIR:T47805 RefSeq:NP_191540.1 UniGene:At.34551
ProteinModelPortal:Q9M1Z3 SMR:Q9M1Z3 IntAct:Q9M1Z3 STRING:Q9M1Z3
PRIDE:Q9M1Z3 EnsemblPlants:AT3G59810.1 GeneID:825150
KEGG:ath:AT3G59810 TAIR:At3g59810 InParanoid:Q9M1Z3
PhylomeDB:Q9M1Z3 ArrayExpress:Q9M1Z3 Genevestigator:Q9M1Z3
Uniprot:Q9M1Z3
Length = 91
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 25 FLQN-RSR-VQIWLYENVNLRIEGHILGFDEYMNIVLESAEEYNIKSKTRKALGTIMLKG 82
FL++ R R V + L V+ R G + D YMNI +E EEY + + + G ++G
Sbjct: 18 FLKSIRGRPVVVKLNSGVDYR--GTLTCLDGYMNIAMEQTEEY-VNGQLKNKYGDAFIRG 74
Query: 83 DNITLIQNLN 92
+N+ I +N
Sbjct: 75 NNVLYISTVN 84
>UNIPROTKB|G4MXF4 [details] [associations]
symbol:MGG_10740 "Sm snRNP core protein Smg1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 EMBL:CM001232
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K11099 RefSeq:XP_003713291.1
ProteinModelPortal:G4MXF4 EnsemblFungi:MGG_10740T0 GeneID:2676245
KEGG:mgr:MGG_10740 Uniprot:G4MXF4
Length = 88
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 16/58 (27%), Positives = 40/58 (68%)
Query: 33 QIWLYENVNLRIEGHILGFDEYMNIVLESA-EEYNIKSKTRKALGTIMLKGDNITLIQ 89
++++ N + ++ G + G+D ++NIVLE A EE + K + +GT++++G+++ +++
Sbjct: 15 KVFVQLNGSRKVVGVVRGYDVFLNIVLEDAFEEKDGGEKVK--IGTVVIRGNSVVMLE 70
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.139 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 98 98 0.00091 102 3 11 22 0.37 30
29 0.45 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 57
No. of states in DFA: 506 (54 KB)
Total size of DFA: 100 KB (2071 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 9.70u 0.08s 9.78t Elapsed: 00:01:08
Total cpu time: 9.71u 0.08s 9.79t Elapsed: 00:01:09
Start: Thu Aug 15 14:08:51 2013 End: Thu Aug 15 14:10:00 2013