Query psy1075
Match_columns 624
No_of_seqs 393 out of 2020
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 17:34:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1075.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1075hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4266|consensus 100.0 2E-169 5E-174 1358.5 29.3 458 84-575 191-812 (1033)
2 cd07479 Peptidases_S8_SKI-1_li 99.8 3.2E-20 6.9E-25 188.7 6.8 52 87-138 1-52 (255)
3 cd05562 Peptidases_S53_like Pe 99.7 8.1E-19 1.7E-23 180.9 5.7 61 142-207 212-274 (275)
4 PTZ00262 subtilisin-like prote 99.7 3E-18 6.5E-23 192.8 7.7 64 140-208 550-614 (639)
5 cd07489 Peptidases_S8_5 Peptid 99.7 1.3E-17 2.8E-22 173.0 5.4 64 140-208 224-299 (312)
6 cd07476 Peptidases_S8_thiazoli 99.7 7.6E-17 1.7E-21 165.5 6.2 51 140-191 205-255 (267)
7 cd07474 Peptidases_S8_subtilis 99.6 3.1E-16 6.8E-21 160.3 6.8 60 141-205 230-295 (295)
8 cd04077 Peptidases_S8_PCSK9_Pr 99.6 4.2E-16 9.2E-21 156.8 5.4 53 86-138 17-70 (255)
9 cd04852 Peptidases_S8_3 Peptid 99.6 5.9E-16 1.3E-20 160.6 6.4 42 140-186 266-307 (307)
10 cd07480 Peptidases_S8_12 Pepti 99.6 7.2E-16 1.6E-20 159.4 6.8 51 88-138 2-53 (297)
11 cd05561 Peptidases_S8_4 Peptid 99.6 6.6E-16 1.4E-20 155.7 6.0 54 139-198 184-239 (239)
12 cd07494 Peptidases_S8_10 Pepti 99.6 1.3E-15 2.7E-20 158.9 7.6 51 143-198 245-295 (298)
13 cd04059 Peptidases_S8_Protein_ 99.6 1E-15 2.2E-20 156.9 6.0 41 141-186 257-297 (297)
14 cd07492 Peptidases_S8_8 Peptid 99.6 9.9E-16 2.1E-20 151.2 5.2 43 139-186 180-222 (222)
15 cd07497 Peptidases_S8_14 Pepti 99.6 3.3E-15 7.1E-20 157.0 5.9 46 140-185 265-311 (311)
16 cd07485 Peptidases_S8_Fervidol 99.5 5.8E-15 1.3E-19 150.6 6.1 41 140-184 233-273 (273)
17 cd07483 Peptidases_S8_Subtilis 99.5 7.2E-15 1.6E-19 152.2 5.0 42 140-186 250-291 (291)
18 cd07475 Peptidases_S8_C5a_Pept 99.5 8.7E-15 1.9E-19 153.5 5.2 65 142-207 270-346 (346)
19 cd07478 Peptidases_S8_CspA-lik 99.5 1.7E-14 3.7E-19 158.7 6.1 60 139-198 392-455 (455)
20 cd07484 Peptidases_S8_Thermita 99.5 2.1E-14 4.5E-19 144.8 5.4 43 140-188 217-259 (260)
21 cd07493 Peptidases_S8_9 Peptid 99.5 2.6E-14 5.7E-19 144.7 5.7 42 140-186 220-261 (261)
22 cd07481 Peptidases_S8_Bacillop 99.5 2.7E-14 5.8E-19 145.1 5.8 44 140-186 221-264 (264)
23 KOG4266|consensus 99.5 1.2E-14 2.6E-19 160.0 1.9 81 1-83 398-479 (1033)
24 cd04842 Peptidases_S8_Kp43_pro 99.4 7.9E-14 1.7E-18 142.3 6.2 45 142-186 246-293 (293)
25 cd07490 Peptidases_S8_6 Peptid 99.4 8.8E-14 1.9E-18 139.4 5.4 40 142-186 215-254 (254)
26 cd04843 Peptidases_S8_11 Pepti 99.4 1.1E-13 2.3E-18 143.2 6.0 46 141-186 232-277 (277)
27 cd07473 Peptidases_S8_Subtilis 99.4 1.3E-13 2.8E-18 138.6 5.6 42 140-186 218-259 (259)
28 cd07487 Peptidases_S8_1 Peptid 99.4 3E-13 6.5E-18 135.6 6.3 40 142-186 225-264 (264)
29 cd04847 Peptidases_S8_Subtilis 99.4 4.4E-13 9.6E-18 138.0 4.9 40 142-186 252-291 (291)
30 cd07477 Peptidases_S8_Subtilis 99.4 5.8E-13 1.3E-17 131.1 5.2 40 140-184 190-229 (229)
31 cd07498 Peptidases_S8_15 Pepti 99.3 6.4E-13 1.4E-17 132.5 5.3 39 141-184 204-242 (242)
32 cd04848 Peptidases_S8_Autotran 99.3 8.3E-13 1.8E-17 131.4 5.8 40 142-186 228-267 (267)
33 cd07496 Peptidases_S8_13 Pepti 99.3 1.8E-12 4E-17 133.1 5.3 39 141-184 247-285 (285)
34 PF00082 Peptidase_S8: Subtila 99.3 1.2E-12 2.5E-17 132.1 1.7 61 141-206 216-281 (282)
35 cd07482 Peptidases_S8_Lantibio 99.3 4.3E-12 9.3E-17 129.4 5.3 37 143-184 257-294 (294)
36 KOG1153|consensus 99.3 4E-12 8.7E-17 137.0 5.1 47 92-138 217-264 (501)
37 cd05562 Peptidases_S53_like Pe 99.2 1E-11 2.2E-16 128.4 6.2 62 3-69 212-274 (275)
38 cd07491 Peptidases_S8_7 Peptid 99.2 1.2E-11 2.5E-16 126.1 4.0 46 93-138 2-56 (247)
39 PTZ00262 subtilisin-like prote 99.0 6.4E-10 1.4E-14 126.2 6.3 68 2-74 551-618 (639)
40 cd07474 Peptidases_S8_subtilis 98.9 8.8E-10 1.9E-14 112.9 4.6 60 3-67 231-295 (295)
41 cd07489 Peptidases_S8_5 Peptid 98.8 2.7E-09 5.9E-14 111.1 5.5 71 2-76 225-305 (312)
42 KOG1114|consensus 98.8 1.3E-09 2.8E-14 125.4 3.3 73 2-75 491-563 (1304)
43 PF00082 Peptidase_S8: Subtila 98.8 2.3E-09 4.9E-14 108.3 4.3 62 3-69 217-282 (282)
44 cd07475 Peptidases_S8_C5a_Pept 98.8 5.1E-09 1.1E-13 110.1 5.2 66 3-69 270-346 (346)
45 cd07478 Peptidases_S8_CspA-lik 98.8 6.2E-09 1.3E-13 115.1 5.6 59 2-60 394-455 (455)
46 cd00306 Peptidases_S8_S53 Pept 98.7 2.3E-08 5E-13 96.5 5.5 39 141-184 203-241 (241)
47 KOG3526|consensus 98.6 1.9E-08 4.1E-13 107.0 2.1 54 85-138 152-215 (629)
48 cd07476 Peptidases_S8_thiazoli 98.5 7.5E-08 1.6E-12 99.3 5.0 47 3-50 207-253 (267)
49 cd07480 Peptidases_S8_12 Pepti 98.5 7.1E-08 1.5E-12 100.1 4.1 58 3-65 233-296 (297)
50 KOG1114|consensus 98.5 6E-07 1.3E-11 104.1 11.3 225 139-392 489-757 (1304)
51 cd04857 Peptidases_S8_Tripepti 98.4 1.7E-07 3.6E-12 102.7 3.1 49 139-188 364-412 (412)
52 COG1404 AprE Subtilisin-like s 98.1 7.8E-06 1.7E-10 87.0 8.5 63 140-206 355-419 (508)
53 cd07488 Peptidases_S8_2 Peptid 97.8 8.1E-06 1.8E-10 83.7 2.7 46 139-184 200-246 (247)
54 PF09822 ABC_transp_aux: ABC-t 97.3 0.001 2.2E-08 68.5 9.3 104 375-527 165-268 (271)
55 KOG1153|consensus 96.1 0.0028 6.1E-08 69.9 2.0 46 3-48 413-462 (501)
56 PF14258 DUF4350: Domain of un 96.1 0.02 4.3E-07 47.4 6.6 63 381-478 7-70 (70)
57 COG1404 AprE Subtilisin-like s 95.4 0.014 3E-07 62.3 3.9 63 2-69 356-420 (508)
58 TIGR03521 GldG gliding-associa 95.1 0.071 1.5E-06 61.0 8.7 78 439-529 231-313 (552)
59 cd04056 Peptidases_S53 Peptida 91.8 0.11 2.3E-06 56.3 2.6 23 3-25 276-298 (361)
60 KOG3526|consensus 89.2 0.099 2.1E-06 57.0 -0.4 68 3-75 380-463 (629)
61 cd04857 Peptidases_S8_Tripepti 88.7 0.33 7.2E-06 54.0 3.1 24 90-113 19-42 (412)
62 KOG3525|consensus 87.5 0.79 1.7E-05 51.3 5.2 55 84-138 23-87 (431)
63 cd04056 Peptidases_S53 Peptida 84.3 0.51 1.1E-05 51.1 1.7 27 139-165 273-299 (361)
64 PF08532 Glyco_hydro_42M: Beta 75.9 5.2 0.00011 39.9 5.5 60 380-477 31-90 (207)
65 KOG3861|consensus 74.4 11 0.00025 40.8 7.7 90 380-528 24-116 (438)
66 cd07488 Peptidases_S8_2 Peptid 74.3 1.2 2.6E-05 46.0 0.5 40 99-139 5-45 (247)
67 PF06280 DUF1034: Fn3-like dom 72.4 14 0.0003 33.3 6.9 53 268-329 56-111 (112)
68 cd03143 A4_beta-galactosidase_ 60.9 29 0.00063 32.5 6.9 56 379-471 26-81 (154)
69 CHL00123 rps6 ribosomal protei 52.4 20 0.00043 32.2 4.0 50 441-490 6-57 (97)
70 TIGR01689 EcbF-BcbF capsule bi 52.1 24 0.00052 33.2 4.7 88 437-540 5-103 (126)
71 cd03142 GATase1_ThuA Type 1 gl 50.9 36 0.00078 34.9 6.1 38 439-477 55-94 (215)
72 PF01974 tRNA_int_endo: tRNA i 45.6 87 0.0019 27.0 6.8 63 383-476 6-74 (85)
73 PTZ00331 alpha/beta hydrolase; 40.0 61 0.0013 32.7 5.7 51 432-484 3-64 (212)
74 KOG1263|consensus 38.3 87 0.0019 36.7 7.3 145 442-603 139-307 (563)
75 PLN02373 soluble inorganic pyr 38.0 37 0.0008 34.3 3.8 56 302-371 22-79 (188)
76 cd01015 CSHase N-carbamoylsarc 37.6 26 0.00056 33.9 2.6 40 445-484 1-53 (179)
77 PF03537 Glyco_hydro_114: Glyc 36.7 37 0.0008 29.0 3.1 30 441-476 25-54 (74)
78 cd05561 Peptidases_S8_4 Peptid 33.8 36 0.00079 34.6 3.1 35 25-60 204-239 (239)
79 COG0803 LraI ABC-type metal io 33.7 54 0.0012 34.9 4.5 42 449-490 219-260 (303)
80 COG5426 Uncharacterized membra 33.5 73 0.0016 32.8 5.0 94 344-483 21-122 (254)
81 cd01019 ZnuA Zinc binding prot 33.4 58 0.0013 34.2 4.6 45 446-490 203-247 (286)
82 cd00412 pyrophosphatase Inorga 32.3 3E+02 0.0066 27.0 9.0 23 348-371 33-57 (155)
83 PF00857 Isochorismatase: Isoc 32.0 74 0.0016 30.0 4.7 38 445-482 2-51 (174)
84 PLN02621 nicotinamidase 30.9 1.3E+02 0.0029 29.7 6.4 39 444-482 21-65 (197)
85 PRK11609 nicotinamidase/pyrazi 30.7 75 0.0016 31.6 4.7 40 445-484 4-56 (212)
86 PF01301 Glyco_hydro_35: Glyco 30.3 31 0.00067 37.2 2.0 120 343-479 11-180 (319)
87 PF14874 PapD-like: Flagellar- 30.0 2.4E+02 0.0052 24.4 7.3 51 270-333 51-101 (102)
88 COG4934 Predicted protease [Po 29.3 27 0.00058 43.8 1.4 22 4-25 476-497 (1174)
89 PRK01250 inorganic pyrophospha 28.8 76 0.0016 31.8 4.2 27 341-371 43-71 (176)
90 cd00763 Bacterial_PFK Phosphof 28.7 60 0.0013 35.2 3.8 38 444-481 184-223 (317)
91 PF01614 IclR: Bacterial trans 28.4 1.6E+02 0.0034 26.5 6.0 76 369-468 41-120 (129)
92 PF01297 TroA: Periplasmic sol 28.4 64 0.0014 32.9 3.8 41 449-489 177-217 (256)
93 PRK04302 triosephosphate isome 27.1 89 0.0019 31.6 4.5 43 437-479 78-122 (223)
94 TIGR02482 PFKA_ATP 6-phosphofr 26.3 69 0.0015 34.5 3.7 37 444-480 184-222 (301)
95 COG4934 Predicted protease [Po 26.1 34 0.00075 42.9 1.5 25 141-165 474-498 (1174)
96 PF12237 PCIF1_WW: Phosphoryla 25.4 1.3E+02 0.0029 30.2 5.2 95 383-490 51-155 (176)
97 TIGR02483 PFK_mixed phosphofru 25.1 89 0.0019 33.9 4.3 38 444-481 186-225 (324)
98 cd07494 Peptidases_S8_10 Pepti 25.0 92 0.002 33.0 4.3 20 31-50 267-286 (298)
99 PF06283 ThuA: Trehalose utili 24.7 1E+02 0.0022 30.7 4.4 39 438-477 48-87 (217)
100 PF00265 TK: Thymidine kinase; 24.7 64 0.0014 31.9 2.9 32 446-478 79-110 (176)
101 PRK14071 6-phosphofructokinase 24.3 76 0.0017 34.9 3.7 38 444-481 200-239 (360)
102 PRK09545 znuA high-affinity zi 24.1 1.3E+02 0.0027 32.3 5.2 42 449-490 230-271 (311)
103 PF07646 Kelch_2: Kelch motif; 24.0 42 0.00091 25.6 1.2 29 473-501 13-44 (49)
104 PF13964 Kelch_6: Kelch motif 23.9 43 0.00094 25.5 1.2 28 473-500 13-41 (50)
105 TIGR00166 S6 ribosomal protein 23.6 1.3E+02 0.0029 26.3 4.4 51 441-491 1-52 (93)
106 PRK00647 hypothetical protein; 23.4 1E+02 0.0022 28.1 3.7 37 281-317 3-41 (96)
107 cd00431 cysteine_hydrolases Cy 23.2 1.6E+02 0.0035 27.4 5.2 40 445-484 1-53 (161)
108 PF13940 Ldr_toxin: Toxin Ldr, 22.3 72 0.0016 23.9 2.0 15 9-23 14-28 (35)
109 TIGR03767 P_acnes_RR metalloph 21.9 6.7E+02 0.014 29.2 10.5 124 432-566 290-436 (496)
110 smart00002 PLP Myelin proteoli 21.9 39 0.00084 28.3 0.6 11 436-446 22-32 (60)
111 PRK00453 rpsF 30S ribosomal pr 21.6 1.2E+02 0.0026 27.3 3.8 77 441-520 2-80 (108)
112 cd06282 PBP1_GntR_like_2 Ligan 21.5 1.5E+02 0.0032 29.1 4.8 38 447-484 5-42 (266)
113 KOG4175|consensus 21.5 1E+02 0.0022 32.0 3.6 29 446-478 127-155 (268)
114 PLN02960 alpha-amylase 21.5 2.7E+02 0.0059 34.5 7.7 67 379-480 413-486 (897)
115 PF06030 DUF916: Bacterial pro 21.2 3.2E+02 0.0069 25.5 6.6 85 221-308 25-119 (121)
116 TIGR03614 RutB pyrimidine util 21.2 1.2E+02 0.0026 30.7 4.2 41 444-484 16-75 (226)
117 cd06314 PBP1_tmGBP Periplasmic 20.8 1E+02 0.0022 30.7 3.6 38 447-484 4-42 (271)
118 PF07443 HARP: HepA-related pr 20.1 47 0.001 27.4 0.8 21 481-501 7-32 (55)
119 PRK03202 6-phosphofructokinase 20.1 1.2E+02 0.0025 33.0 4.0 39 444-482 185-225 (320)
120 PF01250 Ribosomal_S6: Ribosom 20.1 95 0.0021 26.9 2.8 50 442-491 2-53 (92)
121 PRK13209 L-xylulose 5-phosphat 20.1 3.2E+02 0.007 28.0 7.1 57 378-478 20-77 (283)
No 1
>KOG4266|consensus
Probab=100.00 E-value=2.2e-169 Score=1358.53 Aligned_cols=458 Identities=58% Similarity=1.062 Sum_probs=445.0
Q ss_pred ccccccccccCccEEEEeecCCcccccccccccccccccCCCCccCCCCCcceee-------------------------
Q psy1075 84 SLFLPLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVA------------------------- 138 (624)
Q Consensus 84 ta~w~~G~tG~GV~VAVIDTGVd~~HPdf~~v~~~~~~t~~~~~~D~~GHGT~VA------------------------- 138 (624)
+.+|..|+||++|+|||+|||+.++||||+++.++++|+++.+.+|..||||+||
T Consensus 191 d~LWk~GyTGa~VkvAiFDTGl~~~HPHFrnvKERTNWTNE~tLdD~lgHGTFVAGvia~~~ec~gfa~d~e~~~frvft 270 (1033)
T KOG4266|consen 191 DHLWKKGYTGAKVKVAIFDTGLRADHPHFRNVKERTNWTNEDTLDDNLGHGTFVAGVIAGRNECLGFASDTEIYAFRVFT 270 (1033)
T ss_pred hhHHhccccCCceEEEEeecccccCCccccchhhhcCCcCccccccCcccceeEeeeeccchhhcccCCccceeEEEeec
Confidence 5689999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy1075 139 -------------------------------------------------------------------------------- 138 (624)
Q Consensus 139 -------------------------------------------------------------------------------- 138 (624)
T Consensus 271 ~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGPDfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVG 350 (1033)
T KOG4266|consen 271 DAQVSYTSWFLDAFNYAIATKIDVLNLSIGGPDFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVG 350 (1033)
T ss_pred cceeehhhHHHHHHHHHHhhhcceEeeccCCcccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeec
Confidence
Q ss_pred ----------------------------------------------ceeccCcccccchhHHHHHHHHHhcCCCCCCCCC
Q psy1075 139 ----------------------------------------------GCRTLSGTSVASPVVAGVVALLASGLKHRPAGHI 172 (624)
Q Consensus 139 ----------------------------------------------g~~~lSGTSmAAP~VAGaaALLlS~~P~~~~~~l 172 (624)
||+.+||||+|+|+|||+++||.|..- +..+.+
T Consensus 351 GIdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~~GCr~LSGTSVaSPVVAGav~LLvS~~~-qk~dl~ 429 (1033)
T KOG4266|consen 351 GIDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVSTGCRSLSGTSVASPVVAGAVCLLVSVEA-QKKDLL 429 (1033)
T ss_pred cccccchhhhhccCCcceeecCCcccccCCceEeeccccccCcccccchhccCCcccchhhhceeeeEeeehe-ehhhcc
Confidence 799999999999999999999999633 224689
Q ss_pred ChHhhhhhhhcccccCCCCC-Ccccceeeecccccee------------eeccccCccccCCCCCccCccCCcCeEeeee
Q psy1075 173 NPASMKQGPVSNITRPIGSR-VPFCAGELNVNPQSKV------------FYLDLTECQYMWPYCTQPLYHGAIPIIVNVT 239 (624)
Q Consensus 173 spaqVkq~L~~tA~~l~~~~-~~~G~G~lnl~~a~~~------------~~~dl~~cp~~wP~~~qpL~~~a~pv~~nlt 239 (624)
||++|||+|+++|.++++.+ ++||+|++|+.++.++ ..+|+++||||||||+||||+++||+++|+|
T Consensus 430 NPASmKQaLiegA~kLpg~NMfEQGaGkldLL~syqiL~SYkP~asl~PsylD~t~cpYmWPycsQPlYyG~mp~i~NvT 509 (1033)
T KOG4266|consen 430 NPASMKQALIEGAAKLPGPNMFEQGAGKLDLLESYQILKSYKPRASLFPSYLDYTDCPYMWPYCSQPLYYGAMPIIFNVT 509 (1033)
T ss_pred CHHHHHHHHHhHHhhCCCCchhhccCcchhHHHHHHHHHhcCCCceecchhcccccCcccCccccCccccCCcceEEEEE
Confidence 99999999999999999865 7999999999887643 3799999999999999999999999999999
Q ss_pred eccCcccceeeeeCCceeecCCCCCceeEEEEeccceeeeeceEEEEEEEEccCccCceeEEEEEEEEEEECCCCCCCCc
Q psy1075 240 ILNGMGVVGKILERPKWYPYLPHNGEFLEISMTYSDILWPWSGYLAVHISVSAAAAAWQGTVQGHIEVTVESPPLEGEEG 319 (624)
Q Consensus 240 ~~ng~~~~G~i~~~p~w~~~~~~~G~~l~v~~s~s~~~wP~~G~lav~~tv~~~~~~~~G~~~G~v~ltv~s~~~~~~~~ 319 (624)
|+|||+++|+|+.+|+|+|+..++|++|+|+|+||+++|||+|||+|+++|++++++|+|+++|+|+++|+||++.+++.
T Consensus 510 ILNGmgVtg~Iv~~P~W~P~~e~qG~~l~v~f~ys~viWPWtGyla~~i~vkkega~feG~~~G~vtv~v~Sp~~t~~~~ 589 (1033)
T KOG4266|consen 510 ILNGMGVTGYIVSPPTWHPANEEQGNLLSVHFKYSDVIWPWTGYLALHIQVKKEGAQFEGEIEGNVTVKVYSPPATGESG 589 (1033)
T ss_pred EecccceeeEecCCCCCccCccccCceEEEEEecCCcccccccceEEEEEeeeccccceeEeeeeEEEEEecCcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeEEEEEEEEeeecCCCccccceeeccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHhcceEEEEcC
Q psy1075 320 VRRSTVKLAVKANIIPTPPRHKRILWDQYHNLRYPQGYFPRDNLKMKNDPLDWNGDHVHTNFKDLYQHLRNIGYYIEVLG 399 (624)
Q Consensus 320 ~~~~~v~~p~~~~iip~Ppr~~Rilwdq~h~~~yP~gy~prD~l~~~~d~~dw~gDh~htNf~~~~~~lr~~g~~vevl~ 399 (624)
++++||.||+|+||||||||+|||||||||||||||||||||+|++|+|||||||||+|||||+||+|||++|||||||
T Consensus 590 ~~~stv~lplk~KviPtPPR~KRiLWDQyHslrYPPgYiPRD~L~vknDpLDW~gDHiHTNFrdMY~hLR~~GYyievL- 668 (1033)
T KOG4266|consen 590 PRRSTVSLPLKLKVIPTPPRAKRILWDQYHSLRYPPGYIPRDSLDVKNDPLDWHGDHIHTNFRDMYNHLRDAGYYIEVL- 668 (1033)
T ss_pred CceeEEeeeeEEEeccCCCcccchhhhhhccccCCCCCCCcccccccCCccccccccccccHHHHHHHHHhcceehhhh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccchhhhhhhhhcccceeecccCceeeeecCCCeeEEEEecCCCCCCHHHHHHHHHHHHhcCccEEEEee
Q psy1075 400 TPFTCFDARHYGVLLLDLYQHLRNIGYYIEVLGTPFTCFDARHYGVLLLVDPEEEYHREEIDKLRRDVEQDGLALIVLAD 479 (624)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tc~~~~~yg~llivD~E~e~~~~e~~~l~~~v~~~gl~~iv~~d 479 (624)
|+|||||||++||||||||+||+||||||+||++||...||+|+||+|
T Consensus 669 --------------------------------g~PfTCFdAsqYGtLLmVD~E~~yfpEEI~kLr~dV~n~GL~lVvF~d 716 (1033)
T KOG4266|consen 669 --------------------------------GSPFTCFDASQYGTLLMVDLEDDYFPEEIEKLRDDVINTGLGLVVFAD 716 (1033)
T ss_pred --------------------------------cCCceeccHhHCceEEEEccccccCHHHHHHHHHHHHhcCceEEEEec
Confidence 999999999999999999999999999999999999888999999999
Q ss_pred ecchhhhhhceecccccccceeccCCCCCcchhhhhhhhhcccccCeEEeeeEEeCCeeEEeecCCceeecCCCCeEEEE
Q psy1075 480 WYNTDVMRKIKFYDENTRQWWLPETGGSNIPALNELLAVHGIRLGDRVYEGSITMNDRTLQYMSGTSIVQFPTSGVLVGA 559 (624)
Q Consensus 480 Wy~~~~~~~~~f~d~nt~~~w~p~tgg~nvPalN~lL~~~~i~~g~~v~~g~~~~~~~~~~~~sg~~i~~fp~~~~~~~~ 559 (624)
|||++||+|||||||||||||+|+||||||||||+||++|||||||+++||+|+|++|+|||+|||+|++||+||+|+..
T Consensus 717 WYNt~vM~K~kFfDeNTRqWWtPdTGGANIPALN~LL~~fgiaFgD~i~eG~F~l~~h~myYASG~~IvkFP~~G~~~t~ 796 (1033)
T KOG4266|consen 717 WYNTDVMVKMKFFDENTRQWWTPDTGGANIPALNNLLASFGIAFGDKILEGDFSLDGHQMYYASGTNIVKFPAGGFLHTF 796 (1033)
T ss_pred cccceeeeeeeeeccCcceeccCCCCCcCcHhHHHHHhhhccccccceecceeeecCceeeeecCCeEEEccCCCEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccccccccCCCCCC
Q psy1075 560 KLNNQGKKGVNPNAPM 575 (624)
Q Consensus 560 ~l~~~~~~~~~~~~~~ 575 (624)
+|+|||.++++||++.
T Consensus 797 ~l~Dqgls~~~q~t~~ 812 (1033)
T KOG4266|consen 797 PLLDQGLSGATQNTLL 812 (1033)
T ss_pred eecccchhhhcccchh
Confidence 9999999999999854
No 2
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=99.80 E-value=3.2e-20 Score=188.71 Aligned_cols=52 Identities=69% Similarity=1.108 Sum_probs=48.4
Q ss_pred cccccccCccEEEEeecCCcccccccccccccccccCCCCccCCCCCcceee
Q psy1075 87 LPLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVA 138 (624)
Q Consensus 87 w~~G~tG~GV~VAVIDTGVd~~HPdf~~v~~~~~~t~~~~~~D~~GHGT~VA 138 (624)
|++|++|+||+|||+|+||+.+||+|+++....+|.++....|..|||||||
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~~~~~~~~~~~~~d~~gHGT~VA 52 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVKERTNWTNEKTLDDGLGHGTFVA 52 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccccccccCCCCCCCCCCCcHHHHH
Confidence 8999999999999999999999999998877788888777889999999999
No 3
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=99.75 E-value=8.1e-19 Score=180.94 Aligned_cols=61 Identities=25% Similarity=0.253 Sum_probs=54.6
Q ss_pred ccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcccccCCC--CCCcccceeeeccccce
Q psy1075 142 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNITRPIG--SRVPFCAGELNVNPQSK 207 (624)
Q Consensus 142 ~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~tA~~l~~--~~~~~G~G~lnl~~a~~ 207 (624)
.++|||||||||||++||++|.+| .+++++||++|+++|++++. ....+|||+||+.+|++
T Consensus 212 ~~sGTS~AaP~VaG~aALl~~~~p-----~lt~~~v~~~L~~tA~~~~~~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 212 NFFGTSAAAPHAAGVAALVLSANP-----GLTPADIRDALRSTALDMGEPGYDNASGSGLVDADRAVA 274 (275)
T ss_pred ecccchHHHHHHHHHHHHHHHhCC-----CCCHHHHHHHHHHhCcccCCCCCCCCcCcCcccHHHHhh
Confidence 457999999999999999999999 68899999999999998743 45689999999998864
No 4
>PTZ00262 subtilisin-like protease; Provisional
Probab=99.73 E-value=3e-18 Score=192.80 Aligned_cols=64 Identities=22% Similarity=0.246 Sum_probs=55.1
Q ss_pred eeccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcccccCCCCCCccc-ceeeecccccee
Q psy1075 140 CRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNITRPIGSRVPFC-AGELNVNPQSKV 208 (624)
Q Consensus 140 ~~~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~tA~~l~~~~~~~G-~G~lnl~~a~~~ 208 (624)
|..+||||||||||||++||++|.+| .++++||+++|+++|.+++......+ .|+||+.+|++.
T Consensus 550 Y~~~SGTSmAAP~VAGvAALLlS~~P-----~LT~~qV~~iL~~TA~~l~~~~n~~~wgG~LDa~kAV~~ 614 (639)
T PTZ00262 550 YRKLNGTSMAAPHVAAIASLILSINP-----SLSYEEVIRILKESIVQLPSLKNKVKWGGYLDIHHAVNL 614 (639)
T ss_pred eeecCCCchhHHHHHHHHHHHHhhCC-----CCCHHHHHHHHHHhCccCCCCCCccccCcEEcHHHHHHH
Confidence 44579999999999999999999999 78999999999999998876544344 489999999865
No 5
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.69 E-value=1.3e-17 Score=173.04 Aligned_cols=64 Identities=31% Similarity=0.291 Sum_probs=55.5
Q ss_pred eeccCcccccchhHHHHHHHHHhcC-CCCCCCCCChHhhhhhhhcccccCCCC-----------CCcccceeeeccccce
Q psy1075 140 CRTLSGTSVASPVVAGVVALLASGL-KHRPAGHINPASMKQGPVSNITRPIGS-----------RVPFCAGELNVNPQSK 207 (624)
Q Consensus 140 ~~~lSGTSmAAP~VAGaaALLlS~~-P~~~~~~lspaqVkq~L~~tA~~l~~~-----------~~~~G~G~lnl~~a~~ 207 (624)
+...+|||||||+|||++||++|++ | .+++.+|+++|..+|..+... ...+|+|++|+.+|++
T Consensus 224 ~~~~~GTS~Aap~vaG~~Al~~~~~~~-----~~~~~~v~~~l~~ta~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~a~~ 298 (312)
T cd07489 224 YAVLSGTSMATPYVAGAAALLIQARHG-----KLSPAELRDLLASTAKPLPWSDGTSALPDLAPVAQQGAGLVNAYKALY 298 (312)
T ss_pred eEeeccHHHHHHHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHhCccccccCCCccccCCCCHhhcCcceeeHHHHhc
Confidence 5567999999999999999999999 7 799999999999999875321 1467999999999986
Q ss_pred e
Q psy1075 208 V 208 (624)
Q Consensus 208 ~ 208 (624)
.
T Consensus 299 ~ 299 (312)
T cd07489 299 A 299 (312)
T ss_pred C
Confidence 5
No 6
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=99.66 E-value=7.6e-17 Score=165.46 Aligned_cols=51 Identities=29% Similarity=0.290 Sum_probs=44.7
Q ss_pred eeccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcccccCCCC
Q psy1075 140 CRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNITRPIGS 191 (624)
Q Consensus 140 ~~~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~tA~~l~~~ 191 (624)
+..++|||||||+|||++||++|.+|... ..++|++||++|+++|++++.+
T Consensus 205 ~~~~sGTS~AaP~vaG~aALl~s~~~~~~-~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 205 VVRRSGTSFAAAIVAGIAALLLSLQLRRG-APPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred eEEeccHHHHHHHHHHHHHHHHHhhhhhC-CCCCHHHHHHHHHHhCccCCCc
Confidence 66789999999999999999999998433 3589999999999999998653
No 7
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.63 E-value=3.1e-16 Score=160.28 Aligned_cols=60 Identities=30% Similarity=0.346 Sum_probs=52.7
Q ss_pred eccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcccccCCCC------CCcccceeeecccc
Q psy1075 141 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNITRPIGS------RVPFCAGELNVNPQ 205 (624)
Q Consensus 141 ~~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~tA~~l~~~------~~~~G~G~lnl~~a 205 (624)
...+|||||||+|||++||++|++| .+++++||++|+.+|.+.... ...+|+|+||+.+|
T Consensus 230 ~~~~GTS~AaP~vaG~aAll~~~~p-----~l~~~~v~~~L~~tA~~~~~~~~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 230 ARMSGTSMAAPHVAGAAALLKQAHP-----DWSPAQIKAALMNTAKPLYDSDGVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred EEeccHHHHHHHHHHHHHHHHhhCC-----CCCHHHHHHHHHhhCcccccCCCCcCChhccCcceeccccC
Confidence 4568999999999999999999999 789999999999999986432 25779999999876
No 8
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=99.61 E-value=4.2e-16 Score=156.82 Aligned_cols=53 Identities=36% Similarity=0.500 Sum_probs=42.9
Q ss_pred ccccccccCccEEEEeecCCccccccccc-ccccccccCCCCccCCCCCcceee
Q psy1075 86 FLPLGIRGSGVKVAVFDTGLSSGHTGFNN-VAERTDWTNENTLEDKLGHGTFVA 138 (624)
Q Consensus 86 ~w~~G~tG~GV~VAVIDTGVd~~HPdf~~-v~~~~~~t~~~~~~D~~GHGT~VA 138 (624)
++..+++|+||+|+|||+|++.+||+|.. +....++.......|..+||||||
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~~~~~~~~~~~~~~~d~~~HGT~vA 70 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGRAIWGADFVGGDPDSDCNGHGTHVA 70 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCCeeeeeecCCCCCCCCCCccHHHHH
Confidence 67888999999999999999999999984 333344444444678899999999
No 9
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.61 E-value=5.9e-16 Score=160.56 Aligned_cols=42 Identities=43% Similarity=0.526 Sum_probs=38.7
Q ss_pred eeccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcccc
Q psy1075 140 CRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNIT 186 (624)
Q Consensus 140 ~~~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~tA~ 186 (624)
|..++|||||||+|||++||++|.+| .++|.+||++|++||+
T Consensus 266 ~~~~sGTS~AaP~vaG~aALl~~~~p-----~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 266 FAFISGTSMASPHVAGVAALLKSAHP-----DWSPAAIKSALMTTAY 307 (307)
T ss_pred EEEeCcHHHHHHHHHHHHHHHHHHCC-----CCCHHHHHHHHHHhcC
Confidence 34578999999999999999999999 7899999999999985
No 10
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.60 E-value=7.2e-16 Score=159.38 Aligned_cols=51 Identities=33% Similarity=0.571 Sum_probs=41.0
Q ss_pred ccccccCccEEEEeecCCcccccccccc-cccccccCCCCccCCCCCcceee
Q psy1075 88 PLGIRGSGVKVAVFDTGLSSGHTGFNNV-AERTDWTNENTLEDKLGHGTFVA 138 (624)
Q Consensus 88 ~~G~tG~GV~VAVIDTGVd~~HPdf~~v-~~~~~~t~~~~~~D~~GHGT~VA 138 (624)
+.+++|+||+|+|+|+|++.+||+|... ....++.......|..|||||||
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~~~~~~~~~~~~~d~~gHGT~VA 53 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDITTKSFVGGEDVQDGHGHGTHCA 53 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCcccCcccCCCCCCCCCCCcHHHHH
Confidence 3578999999999999999999999843 33445555555678899999999
No 11
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.60 E-value=6.6e-16 Score=155.66 Aligned_cols=54 Identities=28% Similarity=0.348 Sum_probs=47.1
Q ss_pred ceeccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcccccCCCC--CCcccce
Q psy1075 139 GCRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNITRPIGS--RVPFCAG 198 (624)
Q Consensus 139 g~~~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~tA~~l~~~--~~~~G~G 198 (624)
+|..++|||||||||||++||++|++| ++++||+++|+++|.+++.+ ...+|||
T Consensus 184 ~~~~~sGTS~AaP~vaG~aAll~~~~p------~~~~~i~~~L~~ta~~~g~~~~d~~~G~G 239 (239)
T cd05561 184 GYRYVSGTSFAAPFVTAALALLLQASP------LAPDDARARLAATAKDLGPPGRDPVFGYG 239 (239)
T ss_pred CEEEeCCHHHHHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHhhccCCCCcCCCcCCC
Confidence 477889999999999999999999998 78999999999999988653 4456776
No 12
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.60 E-value=1.3e-15 Score=158.90 Aligned_cols=51 Identities=25% Similarity=0.266 Sum_probs=44.9
Q ss_pred cCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcccccCCCCCCcccce
Q psy1075 143 LSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNITRPIGSRVPFCAG 198 (624)
Q Consensus 143 lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~tA~~l~~~~~~~G~G 198 (624)
+||||||+|||||++||++|.+| .++++|||++|+++|+++...+..||-|
T Consensus 245 ~sGTS~Aap~vaG~aAll~~~~p-----~~~~~~v~~~l~~ta~~~~~~~~~~~~~ 295 (298)
T cd07494 245 FSGTSAAAPQVAGVCALMLQANP-----GLSPERARSLLNKTARDVTKGASAQGTS 295 (298)
T ss_pred eccchHHHHHHHHHHHHHHHhCC-----CCCHHHHHHHHHHhCcccCCCCCccCCC
Confidence 57999999999999999999999 7899999999999999987666555433
No 13
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=99.59 E-value=1e-15 Score=156.89 Aligned_cols=41 Identities=24% Similarity=0.324 Sum_probs=38.0
Q ss_pred eccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcccc
Q psy1075 141 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNIT 186 (624)
Q Consensus 141 ~~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~tA~ 186 (624)
..++|||||||+|||++||++|++| .+++.+||++|++||+
T Consensus 257 ~~~sGTS~AaP~VAG~aAll~~~~p-----~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 257 SSHNGTSAAAPLAAGVIALMLEANP-----NLTWRDVQHILALTAR 297 (297)
T ss_pred cccCCcchhhhhhHhHHHHhhccCC-----CCCHHHHHHHHHHhcC
Confidence 3568999999999999999999999 7999999999999985
No 14
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.58 E-value=9.9e-16 Score=151.16 Aligned_cols=43 Identities=35% Similarity=0.367 Sum_probs=39.9
Q ss_pred ceeccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcccc
Q psy1075 139 GCRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNIT 186 (624)
Q Consensus 139 g~~~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~tA~ 186 (624)
++..++|||||||+|||++||++|++| .+++.|||++|+++|+
T Consensus 180 ~~~~~~GTS~Aap~vaG~~All~~~~p-----~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 180 RYLTVSGNSFAAPHVTGMVALLLSEKP-----DIDANDLKRLLQRLAV 222 (222)
T ss_pred CEEEeccHHHHHHHHHHHHHHHHHhCC-----CCCHHHHHHHHHHhcC
Confidence 366789999999999999999999999 7899999999999985
No 15
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.55 E-value=3.3e-15 Score=156.96 Aligned_cols=46 Identities=33% Similarity=0.488 Sum_probs=40.2
Q ss_pred eeccCcccccchhHHHHHHHHHhcCCCCCC-CCCChHhhhhhhhccc
Q psy1075 140 CRTLSGTSVASPVVAGVVALLASGLKHRPA-GHINPASMKQGPVSNI 185 (624)
Q Consensus 140 ~~~lSGTSmAAP~VAGaaALLlS~~P~~~~-~~lspaqVkq~L~~tA 185 (624)
|..+||||||||||||++|||+|++|+... ..++|++||++|+++|
T Consensus 265 y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 265 FDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred eeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 345789999999999999999999986553 3689999999999987
No 16
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=99.54 E-value=5.8e-15 Score=150.62 Aligned_cols=41 Identities=34% Similarity=0.466 Sum_probs=36.8
Q ss_pred eeccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcc
Q psy1075 140 CRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSN 184 (624)
Q Consensus 140 ~~~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~t 184 (624)
+..++|||||||+|||++||++|++|+ .++|.|||++|++|
T Consensus 233 ~~~~sGTS~AaP~VaG~aAll~~~~~~----~~~~~~i~~~L~~T 273 (273)
T cd07485 233 YEYLSGTSMAAPHVSGVAALVLSKFPD----VFTPEQIRKLLEES 273 (273)
T ss_pred eEeeccHHHHHHHHHHHHHHHHHhCCC----CCCHHHHHHHHHhC
Confidence 456789999999999999999999993 39999999999875
No 17
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=99.52 E-value=7.2e-15 Score=152.15 Aligned_cols=42 Identities=38% Similarity=0.392 Sum_probs=39.1
Q ss_pred eeccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcccc
Q psy1075 140 CRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNIT 186 (624)
Q Consensus 140 ~~~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~tA~ 186 (624)
|..++|||||||+|||++||++|++| .+++.|||++|++||+
T Consensus 250 ~~~~sGTS~AaP~vaG~aAl~~s~~p-----~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 250 YETDSGTSMAAPVVSGVAALIWSYYP-----NLTAKEVKQIILESGV 291 (291)
T ss_pred eEeeccHHHHHHHHHHHHHHHHHHCC-----CCCHHHHHHHHHHhCC
Confidence 56788999999999999999999999 6899999999999984
No 18
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=99.51 E-value=8.7e-15 Score=153.52 Aligned_cols=65 Identities=32% Similarity=0.367 Sum_probs=48.3
Q ss_pred ccCcccccchhHHHHHHHHHhcCCCCCCCCCChHh----hhhhhhcccccCCC--------CCCcccceeeeccccce
Q psy1075 142 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPAS----MKQGPVSNITRPIG--------SRVPFCAGELNVNPQSK 207 (624)
Q Consensus 142 ~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaq----Vkq~L~~tA~~l~~--------~~~~~G~G~lnl~~a~~ 207 (624)
..+|||||||+|||++||++|+++... ..+++.+ ||++|+++|.+... ....+|+|+||+.+|++
T Consensus 270 ~~~GTS~AaP~VaG~aALl~~~~~~~~-p~l~~~~~~~~ik~~l~~ta~~~~~~~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 270 YMSGTSMASPHVAGASALVKQRLKEKY-PKLSGEELVDLVKNLLMNTATPPLDSEDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred eeCcHHHHHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHhcCCcccccCCCCccCCccccCcchhcHHHhhC
Confidence 357999999999999999999855332 1466655 78888899984211 12356999999999863
No 19
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=99.50 E-value=1.7e-14 Score=158.73 Aligned_cols=60 Identities=32% Similarity=0.292 Sum_probs=51.3
Q ss_pred ceeccCcccccchhHHHHHHHHHhcCCCCC-CCCCChHhhhhhhhcccccCCC---CCCcccce
Q psy1075 139 GCRTLSGTSVASPVVAGVVALLASGLKHRP-AGHINPASMKQGPVSNITRPIG---SRVPFCAG 198 (624)
Q Consensus 139 g~~~lSGTSmAAP~VAGaaALLlS~~P~~~-~~~lspaqVkq~L~~tA~~l~~---~~~~~G~G 198 (624)
+|..+||||||||||||++||++|+.|.+. ...+++++||++|+++|.+++. ++..+|||
T Consensus 392 ~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~~~~~pn~~~GyG 455 (455)
T cd07478 392 GYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRPGDEYPNPEWGYG 455 (455)
T ss_pred cEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhCccCCCCCCCCCCCCCC
Confidence 367899999999999999999999988654 3578999999999999999853 45677887
No 20
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=99.49 E-value=2.1e-14 Score=144.81 Aligned_cols=43 Identities=33% Similarity=0.378 Sum_probs=39.4
Q ss_pred eeccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcccccC
Q psy1075 140 CRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNITRP 188 (624)
Q Consensus 140 ~~~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~tA~~l 188 (624)
+..++|||||||+|||++||+++++| +++.+||++|+++|+++
T Consensus 217 ~~~~~GTS~Aap~vag~~Al~~~~~p------~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 217 YAYMSGTSMATPHVAGVAALLYSQGP------LSASEVRDALKKTADDI 259 (260)
T ss_pred EEEeeeHHHHHHHHHHHHHHHHhcCC------CCHHHHHHHHHHhCccC
Confidence 45678999999999999999999988 67999999999999976
No 21
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.48 E-value=2.6e-14 Score=144.73 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=38.8
Q ss_pred eeccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcccc
Q psy1075 140 CRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNIT 186 (624)
Q Consensus 140 ~~~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~tA~ 186 (624)
+..++|||||||+|||++||++|++| .+++.|||++|++||+
T Consensus 220 ~~~~sGTS~AaP~vaG~aAll~~~~p-----~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 220 ITYANGTSFSCPLIAGLIACLWQAHP-----NWTNLQIKEAILKSAS 261 (261)
T ss_pred EEeeCcHHHHHHHHHHHHHHHHHHCC-----CCCHHHHHHHHHHhcC
Confidence 35678999999999999999999999 7999999999999984
No 22
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=99.48 E-value=2.7e-14 Score=145.09 Aligned_cols=44 Identities=32% Similarity=0.224 Sum_probs=39.2
Q ss_pred eeccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcccc
Q psy1075 140 CRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNIT 186 (624)
Q Consensus 140 ~~~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~tA~ 186 (624)
+...+|||||||+|||++||++|++|.. .+++.||+++|++||+
T Consensus 221 ~~~~~GTS~AaP~vaG~aAll~~~~p~~---~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 221 YGSSSGTSMAAPHVAGVAALLWSANPSL---IGDVDATEAILTETAR 264 (264)
T ss_pred eEeeCcHHHHHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHhcC
Confidence 5568899999999999999999999931 2899999999999985
No 23
>KOG4266|consensus
Probab=99.46 E-value=1.2e-14 Score=159.98 Aligned_cols=81 Identities=67% Similarity=1.025 Sum_probs=76.8
Q ss_pred CcccCCcchhhHHHHHHHHHHHh-cccCCCCCCCCHHHHHHHHHhhcccCCCCcccccCccchhhhHHhhhhcccCCCCC
Q psy1075 1 CRTLSGTSVASPVVAGVVALLAS-GLKHRPAGHINPASMKQGLMASARRLPGVNMFEQGSGKIDLLRAYQILNSYTPQAS 79 (624)
Q Consensus 1 ~~~mSGTSMAaP~VAG~aALLls-~~~~~~~p~ltpaqIk~~L~~tA~~l~~~~~~~~G~G~INa~rAvq~l~s~tPqAS 79 (624)
||.+||||+|+|+|||+++||.| .++++ ..+||+.|||+|+++|.++++.+|++||+|++|+.++++++.+|+|+++
T Consensus 398 Cr~LSGTSVaSPVVAGav~LLvS~~~qk~--dl~NPASmKQaLiegA~kLpg~NMfEQGaGkldLL~syqiL~SYkP~as 475 (1033)
T KOG4266|consen 398 CRSLSGTSVASPVVAGAVCLLVSVEAQKK--DLLNPASMKQALIEGAAKLPGPNMFEQGAGKLDLLESYQILKSYKPRAS 475 (1033)
T ss_pred chhccCCcccchhhhceeeeEeeeheehh--hccCHHHHHHHHHhHHhhCCCCchhhccCcchhHHHHHHHHHhcCCCce
Confidence 99999999999999999999999 44444 6899999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy1075 80 LSPS 83 (624)
Q Consensus 80 lSPS 83 (624)
+.|+
T Consensus 476 l~Ps 479 (1033)
T KOG4266|consen 476 LFPS 479 (1033)
T ss_pred ecch
Confidence 9987
No 24
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=99.45 E-value=7.9e-14 Score=142.29 Aligned_cols=45 Identities=31% Similarity=0.315 Sum_probs=41.1
Q ss_pred ccCcccccchhHHHHHHHHHhcCCCCCCC---CCChHhhhhhhhcccc
Q psy1075 142 TLSGTSVASPVVAGVVALLASGLKHRPAG---HINPASMKQGPVSNIT 186 (624)
Q Consensus 142 ~lSGTSmAAP~VAGaaALLlS~~P~~~~~---~lspaqVkq~L~~tA~ 186 (624)
..+|||||||+|||++||++|++|++... .++++++|++|+++|+
T Consensus 246 ~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 246 SKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 36899999999999999999999988766 8899999999999985
No 25
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.43 E-value=8.8e-14 Score=139.38 Aligned_cols=40 Identities=43% Similarity=0.588 Sum_probs=37.1
Q ss_pred ccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcccc
Q psy1075 142 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNIT 186 (624)
Q Consensus 142 ~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~tA~ 186 (624)
..+|||||||+|||++||+++++| .+++.+||++|+.||.
T Consensus 215 ~~~GTS~AaP~vaG~aAl~~~~~p-----~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 215 RLSGTSMAAPHVAGVAALLAAAHP-----DLSPEQIKDALTETAY 254 (254)
T ss_pred ecccHHHHHHHHHHHHHHHHHHCC-----CCCHHHHHHHHHHhcC
Confidence 456999999999999999999999 6999999999999884
No 26
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.43 E-value=1.1e-13 Score=143.20 Aligned_cols=46 Identities=33% Similarity=0.413 Sum_probs=37.7
Q ss_pred eccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcccc
Q psy1075 141 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNIT 186 (624)
Q Consensus 141 ~~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~tA~ 186 (624)
..++|||||||+|||++||+++...+.....++|+|||++|.+|++
T Consensus 232 ~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 232 DSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred eeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 5689999999999999999987543222137999999999999874
No 27
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.42 E-value=1.3e-13 Score=138.58 Aligned_cols=42 Identities=38% Similarity=0.445 Sum_probs=38.9
Q ss_pred eeccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcccc
Q psy1075 140 CRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNIT 186 (624)
Q Consensus 140 ~~~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~tA~ 186 (624)
+..++|||||||+|||++||++|++| .+++.+||++|+++|+
T Consensus 218 ~~~~~GTS~AaP~vaG~~All~~~~~-----~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 218 YGYMSGTSMATPHVAGAAALLLSLNP-----NLTAAQIKDAILSSAD 259 (259)
T ss_pred EEEeccHhHHHHHHHHHHHHHHHhCC-----CCCHHHHHHHHHHhCC
Confidence 56678999999999999999999999 6899999999999884
No 28
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.39 E-value=3e-13 Score=135.61 Aligned_cols=40 Identities=35% Similarity=0.441 Sum_probs=37.2
Q ss_pred ccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcccc
Q psy1075 142 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNIT 186 (624)
Q Consensus 142 ~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~tA~ 186 (624)
..+|||||||+|||++||++|.+| .+++.+||++|+++|+
T Consensus 225 ~~~GTS~Aap~vaG~~All~~~~p-----~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 225 EMSGTSMATPHVSGAIALLLQANP-----ILTPDEVKCILRDTAT 264 (264)
T ss_pred eccccchHHHHHHHHHHHHHHHCc-----CCCHHHHHHHHHhhcC
Confidence 457999999999999999999999 7899999999999985
No 29
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.36 E-value=4.4e-13 Score=138.00 Aligned_cols=40 Identities=28% Similarity=0.419 Sum_probs=37.1
Q ss_pred ccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcccc
Q psy1075 142 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNIT 186 (624)
Q Consensus 142 ~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~tA~ 186 (624)
.++|||||||+|||++||+++++| .++|++||++|+++|+
T Consensus 252 ~~~GTS~AaP~Vag~aAll~~~~p-----~~t~~~ikalL~~sA~ 291 (291)
T cd04847 252 TVGGTSFAAPLAARLAAGLFAELP-----ELSPETIRALLIHSAE 291 (291)
T ss_pred ccccchHHHHHHHHHHHHHHHHCC-----CCCHHHHHHHHHhhcC
Confidence 457999999999999999999999 5899999999999884
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=99.35 E-value=5.8e-13 Score=131.08 Aligned_cols=40 Identities=40% Similarity=0.446 Sum_probs=36.8
Q ss_pred eeccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcc
Q psy1075 140 CRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSN 184 (624)
Q Consensus 140 ~~~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~t 184 (624)
+...+|||||||+|||++|+++|++| .++|.+||++|+.|
T Consensus 190 ~~~~~GTS~Aap~vag~~All~~~~~-----~~~~~~i~~~l~~t 229 (229)
T cd07477 190 YAYLSGTSMATPHVAGVAALVWSKRP-----ELTNAQVRQALNKT 229 (229)
T ss_pred EEEEccHHHHHHHHHHHHHHHHHhCC-----CCCHHHHHHHHHhC
Confidence 56689999999999999999999999 69999999999865
No 31
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.35 E-value=6.4e-13 Score=132.45 Aligned_cols=39 Identities=44% Similarity=0.562 Sum_probs=36.0
Q ss_pred eccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcc
Q psy1075 141 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSN 184 (624)
Q Consensus 141 ~~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~t 184 (624)
...+|||||||+|||++||++|.+| .+++.+||++|++|
T Consensus 204 ~~~~GTS~Aap~vaG~~All~~~~p-----~l~~~~i~~~L~~t 242 (242)
T cd07498 204 GSFSGTSFASPVAAGVAALILSANP-----NLTPAEVEDILTST 242 (242)
T ss_pred EeeCcHHHHHHHHHHHHHHHHHhCC-----CCCHHHHHHHHHhC
Confidence 3578999999999999999999999 79999999999865
No 32
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=99.34 E-value=8.3e-13 Score=131.44 Aligned_cols=40 Identities=35% Similarity=0.507 Sum_probs=37.4
Q ss_pred ccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcccc
Q psy1075 142 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNIT 186 (624)
Q Consensus 142 ~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~tA~ 186 (624)
..+|||||||+|||++||++|.+| .+++++||++|++||+
T Consensus 228 ~~~GTS~Aap~vaG~~Al~~~~~p-----~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 228 RVSGTSFAAPHVSGAAALLAQKFP-----WLTADQVRQTLLTTAT 267 (267)
T ss_pred ccceeEchHHHHHHHHHHHHHHCC-----CCCHHHHHHHHHhhcC
Confidence 358999999999999999999999 7899999999999985
No 33
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.30 E-value=1.8e-12 Score=133.09 Aligned_cols=39 Identities=41% Similarity=0.468 Sum_probs=36.2
Q ss_pred eccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcc
Q psy1075 141 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSN 184 (624)
Q Consensus 141 ~~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~t 184 (624)
...+|||||||+|||++||++|++| .+++.+||++|++|
T Consensus 247 ~~~sGTS~AaP~vaG~aAlv~~~~p-----~lt~~~v~~~L~~t 285 (285)
T cd07496 247 GFLQGTSMAAPHVAGVAALMKSVNP-----SLTPAQIESLLQST 285 (285)
T ss_pred EeeCcHHHHHHHHHHHHHHHHHhCC-----CCCHHHHHHHHHhC
Confidence 5679999999999999999999999 69999999999865
No 34
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=99.26 E-value=1.2e-12 Score=132.12 Aligned_cols=61 Identities=31% Similarity=0.374 Sum_probs=52.3
Q ss_pred eccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcccccCCC-----CCCcccceeeeccccc
Q psy1075 141 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNITRPIG-----SRVPFCAGELNVNPQS 206 (624)
Q Consensus 141 ~~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~tA~~l~~-----~~~~~G~G~lnl~~a~ 206 (624)
...+|||||||+|||++|+++|.+| .+++.+||++|+++|.+... ....+|+|++|+.+|+
T Consensus 216 ~~~~GTS~Aap~vag~~All~~~~p-----~~~~~~i~~~l~~ta~~~~~~~~~~~~~~~G~G~in~~~a~ 281 (282)
T PF00082_consen 216 TSFSGTSFAAPVVAGAAALLLSKYP-----NLTPAEIKALLINTADDLGSTNGEGYDNSYGWGLINAEKAL 281 (282)
T ss_dssp EEEESHHHHHHHHHHHHHHHHHHST-----TSHHHHHHHHHHHHSBESSETTSSSSHHHHTTSBE-HHHHH
T ss_pred cccCcCCchHHHHHHHHHHHHHHCC-----CCCHHHHHHHHHHhCcccCcCCCCCCCCCccCChhCHHHHh
Confidence 3478999999999999999999999 68999999999999999872 1235699999998875
No 35
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=99.25 E-value=4.3e-12 Score=129.43 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=33.9
Q ss_pred cCcccccchhHHHHHHHHHhcCCCCCCCCCCh-Hhhhhhhhcc
Q psy1075 143 LSGTSVASPVVAGVVALLASGLKHRPAGHINP-ASMKQGPVSN 184 (624)
Q Consensus 143 lSGTSmAAP~VAGaaALLlS~~P~~~~~~lsp-aqVkq~L~~t 184 (624)
++|||||||+|||++||++|++| .+++ .|||++|++|
T Consensus 257 ~~GTS~AaP~VaG~aAll~~~~p-----~~~~~~~v~~~L~~T 294 (294)
T cd07482 257 MYGTSLAAPKVSGALALIIDKNP-----LKKPPDEAIRILYNT 294 (294)
T ss_pred ecchhhhhHHHHHHHHHHHHHCC-----CCCcHHHHHHHHhhC
Confidence 47999999999999999999999 5777 9999999875
No 36
>KOG1153|consensus
Probab=99.25 E-value=4e-12 Score=137.01 Aligned_cols=47 Identities=36% Similarity=0.484 Sum_probs=39.4
Q ss_pred ccCccEEEEeecCCccccccccc-ccccccccCCCCccCCCCCcceee
Q psy1075 92 RGSGVKVAVFDTGLSSGHTGFNN-VAERTDWTNENTLEDKLGHGTFVA 138 (624)
Q Consensus 92 tG~GV~VAVIDTGVd~~HPdf~~-v~~~~~~t~~~~~~D~~GHGT~VA 138 (624)
.|+||+..|+||||+..||||.. ..........+...|++|||||||
T Consensus 217 aG~gvtaYv~DTGVni~H~dFegRa~wGa~i~~~~~~~D~nGHGTH~A 264 (501)
T KOG1153|consen 217 AGKGVTAYVLDTGVNIEHPDFEGRAIWGATIPPKDGDEDCNGHGTHVA 264 (501)
T ss_pred cCCCeEEEEecccccccccccccceecccccCCCCcccccCCCcceee
Confidence 79999999999999999999984 444445554566789999999999
No 37
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=99.22 E-value=1e-11 Score=128.42 Aligned_cols=62 Identities=34% Similarity=0.395 Sum_probs=55.6
Q ss_pred ccCCcchhhHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhcccCCC-CcccccCccchhhhHHhh
Q psy1075 3 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPG-VNMFEQGSGKIDLLRAYQ 69 (624)
Q Consensus 3 ~mSGTSMAaP~VAG~aALLls~~~~~~~p~ltpaqIk~~L~~tA~~l~~-~~~~~~G~G~INa~rAvq 69 (624)
.++|||||||||||++|||+|.+ |.++++|||++|+++|+++.. .....+|||+||+.+|++
T Consensus 212 ~~sGTS~AaP~VaG~aALl~~~~-----p~lt~~~v~~~L~~tA~~~~~~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 212 NFFGTSAAAPHAAGVAALVLSAN-----PGLTPADIRDALRSTALDMGEPGYDNASGSGLVDADRAVA 274 (275)
T ss_pred ecccchHHHHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCcccCCCCCCCCcCcCcccHHHHhh
Confidence 57999999999999999999976 899999999999999998842 244679999999999986
No 38
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.18 E-value=1.2e-11 Score=126.07 Aligned_cols=46 Identities=22% Similarity=0.253 Sum_probs=34.2
Q ss_pred cCccEEEEeecCCcccccccccc-cccccccCC--------CCccCCCCCcceee
Q psy1075 93 GSGVKVAVFDTGLSSGHTGFNNV-AERTDWTNE--------NTLEDKLGHGTFVA 138 (624)
Q Consensus 93 G~GV~VAVIDTGVd~~HPdf~~v-~~~~~~t~~--------~~~~D~~GHGT~VA 138 (624)
+++|+|||||||+|.+||+|+.. ....++... ....|..|||||||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vA 56 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKIIGGKSFSPYEGDGNKVSPYYVSADGHGTAMA 56 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccccccCCCCCCCCCCcccCCCCCCCCCCcHHHHH
Confidence 68999999999999999999853 333333221 12357889999999
No 39
>PTZ00262 subtilisin-like protease; Provisional
Probab=98.96 E-value=6.4e-10 Score=126.23 Aligned_cols=68 Identities=26% Similarity=0.297 Sum_probs=58.5
Q ss_pred cccCCcchhhHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhcccCCCCcccccCccchhhhHHhhhhccc
Q psy1075 2 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNMFEQGSGKIDLLRAYQILNSY 74 (624)
Q Consensus 2 ~~mSGTSMAaP~VAG~aALLls~~~~~~~p~ltpaqIk~~L~~tA~~l~~~~~~~~G~G~INa~rAvq~l~s~ 74 (624)
+.++|||||||||||+||||++.. |.++++||+++|.++|.++++.+....+.|+||+.+|++.+...
T Consensus 551 ~~~SGTSmAAP~VAGvAALLlS~~-----P~LT~~qV~~iL~~TA~~l~~~~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 551 RKLNGTSMAAPHVAAIASLILSIN-----PSLSYEEVIRILKESIVQLPSLKNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred eecCCCchhHHHHHHHHHHHHhhC-----CCCCHHHHHHHHHHhCccCCCCCCccccCcEEcHHHHHHHHHhc
Confidence 468999999999999999999986 99999999999999999987655443445899999999876544
No 40
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.91 E-value=8.8e-10 Score=112.94 Aligned_cols=60 Identities=43% Similarity=0.621 Sum_probs=52.9
Q ss_pred ccCCcchhhHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhcccCCCC-----cccccCccchhhhHH
Q psy1075 3 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGV-----NMFEQGSGKIDLLRA 67 (624)
Q Consensus 3 ~mSGTSMAaP~VAG~aALLls~~~~~~~p~ltpaqIk~~L~~tA~~l~~~-----~~~~~G~G~INa~rA 67 (624)
.++|||||||+|||++||+++++ |.+++++||++|++||++.... +..++|+|+||+.+|
T Consensus 231 ~~~GTS~AaP~vaG~aAll~~~~-----p~l~~~~v~~~L~~tA~~~~~~~~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 231 RMSGTSMAAPHVAGAAALLKQAH-----PDWSPAQIKAALMNTAKPLYDSDGVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred EeccHHHHHHHHHHHHHHHHhhC-----CCCCHHHHHHHHHhhCcccccCCCCcCChhccCcceeccccC
Confidence 57899999999999999999987 9999999999999999987431 236889999999875
No 41
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.84 E-value=2.7e-09 Score=111.09 Aligned_cols=71 Identities=35% Similarity=0.576 Sum_probs=59.9
Q ss_pred cccCCcchhhHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhcccCCC----------CcccccCccchhhhHHhhhh
Q psy1075 2 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPG----------VNMFEQGSGKIDLLRAYQIL 71 (624)
Q Consensus 2 ~~mSGTSMAaP~VAG~aALLls~~~~~~~p~ltpaqIk~~L~~tA~~l~~----------~~~~~~G~G~INa~rAvq~l 71 (624)
..++|||||||+|||++||+++++ + |.+++.+||++|+++|..+.. .+..++|+|+||+.+|++..
T Consensus 225 ~~~~GTS~Aap~vaG~~Al~~~~~--~--~~~~~~~v~~~l~~ta~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~a~~~~ 300 (312)
T cd07489 225 AVLSGTSMATPYVAGAAALLIQAR--H--GKLSPAELRDLLASTAKPLPWSDGTSALPDLAPVAQQGAGLVNAYKALYAT 300 (312)
T ss_pred EeeccHHHHHHHHHHHHHHHHHhc--C--CCCCHHHHHHHHHHhCccccccCCCccccCCCCHhhcCcceeeHHHHhcCC
Confidence 357999999999999999999985 2 789999999999999998742 13367899999999999976
Q ss_pred cccCC
Q psy1075 72 NSYTP 76 (624)
Q Consensus 72 ~s~tP 76 (624)
....+
T Consensus 301 ~~~~~ 305 (312)
T cd07489 301 TTLSP 305 (312)
T ss_pred ccccc
Confidence 65544
No 42
>KOG1114|consensus
Probab=98.84 E-value=1.3e-09 Score=125.41 Aligned_cols=73 Identities=34% Similarity=0.566 Sum_probs=67.8
Q ss_pred cccCCcchhhHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhcccCCCCcccccCccchhhhHHhhhhcccC
Q psy1075 2 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNMFEQGSGKIDLLRAYQILNSYT 75 (624)
Q Consensus 2 ~~mSGTSMAaP~VAG~aALLls~~~~~~~p~ltpaqIk~~L~~tA~~l~~~~~~~~G~G~INa~rAvq~l~s~t 75 (624)
+.|+|||||+|+++|.+|||+|+.++++ -.++|..||.+|++||.+++..+.+.||.|+|++.+|++.+.+..
T Consensus 491 qLMNGTSMsSP~acG~IAllLSgLKa~n-i~ytpysVrrAlenTa~~l~~id~faqG~GmlqVdkAyEyL~q~~ 563 (1304)
T KOG1114|consen 491 QLMNGTSMSSPSACGAIALLLSGLKAQN-IPYTPYSVRRALENTATKLGDIDSFAQGQGMLQVDKAYEYLAQSD 563 (1304)
T ss_pred hhhCCcccCCccccchHHHHHHHHHhcC-CCCcHHHHHHHHHhcccccCccchhccCcceeehhHHHHHHHHhh
Confidence 4799999999999999999999988776 889999999999999999988889999999999999999987653
No 43
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=98.83 E-value=2.3e-09 Score=108.30 Aligned_cols=62 Identities=40% Similarity=0.488 Sum_probs=53.8
Q ss_pred ccCCcchhhHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhcccCC---C-CcccccCccchhhhHHhh
Q psy1075 3 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLP---G-VNMFEQGSGKIDLLRAYQ 69 (624)
Q Consensus 3 ~mSGTSMAaP~VAG~aALLls~~~~~~~p~ltpaqIk~~L~~tA~~l~---~-~~~~~~G~G~INa~rAvq 69 (624)
..+|||||||+|||++||+++.. |.+++.+||++|+++|.+++ . .....+|+|++|+.+|++
T Consensus 217 ~~~GTS~Aap~vag~~All~~~~-----p~~~~~~i~~~l~~ta~~~~~~~~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 217 SFSGTSFAAPVVAGAAALLLSKY-----PNLTPAEIKALLINTADDLGSTNGEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp EEESHHHHHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHSBESSETTSSSSHHHHTTSBE-HHHHHH
T ss_pred ccCcCCchHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHhCcccCcCCCCCCCCCccCChhCHHHHhC
Confidence 47899999999999999999976 89999999999999999987 1 234567999999999974
No 44
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=98.78 E-value=5.1e-09 Score=110.13 Aligned_cols=66 Identities=36% Similarity=0.423 Sum_probs=53.1
Q ss_pred ccCCcchhhHHHHHHHHHHHhcccCCCCCCCCHHH----HHHHHHhhcccCCC-------CcccccCccchhhhHHhh
Q psy1075 3 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPAS----MKQGLMASARRLPG-------VNMFEQGSGKIDLLRAYQ 69 (624)
Q Consensus 3 ~mSGTSMAaP~VAG~aALLls~~~~~~~p~ltpaq----Ik~~L~~tA~~l~~-------~~~~~~G~G~INa~rAvq 69 (624)
.++|||||||+|||++||++|+++... |.+++.+ ||++|+++|.+... +...++|+|+||+.+|++
T Consensus 270 ~~~GTS~AaP~VaG~aALl~~~~~~~~-p~l~~~~~~~~ik~~l~~ta~~~~~~~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 270 YMSGTSMASPHVAGASALVKQRLKEKY-PKLSGEELVDLVKNLLMNTATPPLDSEDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred eeCcHHHHHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHhcCCcccccCCCCccCCccccCcchhcHHHhhC
Confidence 578999999999999999999865444 7888877 78888999984321 233467999999999974
No 45
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=98.77 E-value=6.2e-09 Score=115.06 Aligned_cols=59 Identities=37% Similarity=0.317 Sum_probs=50.5
Q ss_pred cccCCcchhhHHHHHHHHHHHhcccC-CCCCCCCHHHHHHHHHhhcccCC--CCcccccCcc
Q psy1075 2 RTLSGTSVASPVVAGVVALLASGLKH-RPAGHINPASMKQGLMASARRLP--GVNMFEQGSG 60 (624)
Q Consensus 2 ~~mSGTSMAaP~VAG~aALLls~~~~-~~~p~ltpaqIk~~L~~tA~~l~--~~~~~~~G~G 60 (624)
..++|||||||||||++|||+|.... .+.|.+++++||++|+++|+++. .+++.++|||
T Consensus 394 ~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~~~~~pn~~~GyG 455 (455)
T cd07478 394 TTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRPGDEYPNPEWGYG 455 (455)
T ss_pred EeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhCccCCCCCCCCCCCCCC
Confidence 46899999999999999999997532 23488999999999999999986 3577889998
No 46
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=98.67 E-value=2.3e-08 Score=96.50 Aligned_cols=39 Identities=51% Similarity=0.689 Sum_probs=35.4
Q ss_pred eccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcc
Q psy1075 141 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSN 184 (624)
Q Consensus 141 ~~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~t 184 (624)
..++|||||||+|||++|++++.+| .+++.++|++|+.+
T Consensus 203 ~~~~GTS~Aap~vaG~~Al~~~~~~-----~~~~~~~~~~l~~t 241 (241)
T cd00306 203 ATLSGTSMAAPIVAGVAALLLSANP-----DLTPAQVKAALLST 241 (241)
T ss_pred EeeccHHHHHHHHHHHHHHHHHHCC-----CCCHHHHHHHHhhC
Confidence 5667999999999999999999999 68999999999754
No 47
>KOG3526|consensus
Probab=98.58 E-value=1.9e-08 Score=107.05 Aligned_cols=54 Identities=28% Similarity=0.382 Sum_probs=40.1
Q ss_pred cccccccccCccEEEEeecCCccccccccccc---ccccc-cCCC----CccC--CCCCcceee
Q psy1075 85 LFLPLGIRGSGVKVAVFDTGLSSGHTGFNNVA---ERTDW-TNEN----TLED--KLGHGTFVA 138 (624)
Q Consensus 85 a~w~~G~tG~GV~VAVIDTGVd~~HPdf~~v~---~~~~~-t~~~----~~~D--~~GHGT~VA 138 (624)
.+|++|++||+|+++|+|.|||+-|||++... ...++ +++. .+.| -+.|||.||
T Consensus 152 ~awa~g~tgknvttaimddgvdymhpdlk~nynaeasydfssndpfpyprytddwfnshgtrca 215 (629)
T KOG3526|consen 152 EAWALGYTGKNVTTAIMDDGVDYMHPDLKSNYNAEASYDFSSNDPFPYPRYTDDWFNSHGTRCA 215 (629)
T ss_pred HHHhhcccCCCceEEeecCCchhcCcchhcccCceeecccccCCCCCCCcccchhhhccCcccc
Confidence 47999999999999999999999999998422 22222 2322 1223 368999999
No 48
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=98.53 E-value=7.5e-08 Score=99.29 Aligned_cols=47 Identities=34% Similarity=0.433 Sum_probs=41.6
Q ss_pred ccCCcchhhHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhcccCC
Q psy1075 3 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLP 50 (624)
Q Consensus 3 ~mSGTSMAaP~VAG~aALLls~~~~~~~p~ltpaqIk~~L~~tA~~l~ 50 (624)
.++|||||||||||++||++|.+.+.+ +.+++++||++|++||+++.
T Consensus 207 ~~sGTS~AaP~vaG~aALl~s~~~~~~-~~~~~~~vk~~L~~tA~~~~ 253 (267)
T cd07476 207 RRSGTSFAAAIVAGIAALLLSLQLRRG-APPDPLAVRRALLETATPCD 253 (267)
T ss_pred EeccHHHHHHHHHHHHHHHHHhhhhhC-CCCCHHHHHHHHHHhCccCC
Confidence 579999999999999999999874433 56999999999999999985
No 49
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.51 E-value=7.1e-08 Score=100.12 Aligned_cols=58 Identities=34% Similarity=0.444 Sum_probs=47.1
Q ss_pred ccCCcchhhHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHh------hcccCCCCcccccCccchhhh
Q psy1075 3 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMA------SARRLPGVNMFEQGSGKIDLL 65 (624)
Q Consensus 3 ~mSGTSMAaP~VAG~aALLls~~~~~~~p~ltpaqIk~~L~~------tA~~l~~~~~~~~G~G~INa~ 65 (624)
.++|||||||+|||++||++|.+ |.++..+++++|++ +....++.+..++|+|++++.
T Consensus 233 ~~sGTS~AaP~VaG~aAll~~~~-----p~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 233 SMSGTSMATPHVAGVAALWAEAL-----PKAGGRALAALLQARLTAARTTQFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred EeCcHHHHHHHHHHHHHHHHHhC-----cccCHHHHHHHHHHHHhhcccCCCCCCCChhhcCCceeecC
Confidence 57999999999999999999987 88888888888873 223344566778999998874
No 50
>KOG1114|consensus
Probab=98.49 E-value=6e-07 Score=104.10 Aligned_cols=225 Identities=21% Similarity=0.249 Sum_probs=132.4
Q ss_pred ceeccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcccccCCC-CCCcccceeeeccccceee-eccccCc
Q psy1075 139 GCRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNITRPIG-SRVPFCAGELNVNPQSKVF-YLDLTEC 216 (624)
Q Consensus 139 g~~~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~tA~~l~~-~~~~~G~G~lnl~~a~~~~-~~dl~~c 216 (624)
+...|+|||||+|+++|++||++|...+.. ...+|..||++|.+||.+++. ..+.||.|++++.+|.+.. +.+..
T Consensus 489 ~~qLMNGTSMsSP~acG~IAllLSgLKa~n-i~ytpysVrrAlenTa~~l~~id~faqG~GmlqVdkAyEyL~q~~~~-- 565 (1304)
T KOG1114|consen 489 NSQLMNGTSMSSPSACGAIALLLSGLKAQN-IPYTPYSVRRALENTATKLGDIDSFAQGQGMLQVDKAYEYLAQSDFS-- 565 (1304)
T ss_pred hhhhhCCcccCCccccchHHHHHHHHHhcC-CCCcHHHHHHHHHhcccccCccchhccCcceeehhHHHHHHHHhhhc--
Confidence 567899999999999999999999887433 468999999999999999876 5689999999999997431 22211
Q ss_pred cccCCCCCccCccCCcCeEeeeeeccCcccceeeee--------------CCceeecCCCCCce----eEEEEeccceee
Q psy1075 217 QYMWPYCTQPLYHGAIPIIVNVTILNGMGVVGKILE--------------RPKWYPYLPHNGEF----LEISMTYSDILW 278 (624)
Q Consensus 217 p~~wP~~~qpL~~~a~pv~~nlt~~ng~~~~G~i~~--------------~p~w~~~~~~~G~~----l~v~~s~s~~~w 278 (624)
+..+.-+ +++++-|..+..=.+.+ -|.|++....+-+. ++..+..+.. |
T Consensus 566 -----------f~~~l~f-~~v~VgN~~srGIyLRep~~~~~p~e~~i~VePiF~~~~e~~keki~Fe~~L~L~st~p-w 632 (1304)
T KOG1114|consen 566 -----------FPNALGF-INVNVGNSCSRGIYLREPTQVCSPSEHTIGVEPIFENGEENEKEKISFEVQLSLASTQP-W 632 (1304)
T ss_pred -----------CCcccee-EEEeeccccccceEecCCcccCCccccceeccccccCccccccccccceeeEeeecCCc-c
Confidence 1111111 34444454322212221 14444332222111 3333433333 2
Q ss_pred ee--------ceEEEEEEEEccCccCceeEEEEEEEEEEECCCCCCCCceeeeEEEEEEEEeeecCCCccccceeecccc
Q psy1075 279 PW--------SGYLAVHISVSAAAAAWQGTVQGHIEVTVESPPLEGEEGVRRSTVKLAVKANIIPTPPRHKRILWDQYHN 350 (624)
Q Consensus 279 P~--------~G~lav~~tv~~~~~~~~G~~~G~v~ltv~s~~~~~~~~~~~~~v~~p~~~~iip~Ppr~~Rilwdq~h~ 350 (624)
.= .+-=.+.|+|.+.+.. .|+--+. .+.+.... ..++.-.++||+| |.| +-+-=|||-.
T Consensus 633 Vq~p~~l~l~~~~R~i~VrVDpt~l~-~G~hy~e-V~gyD~~~-----p~~gplFrIPVTV-i~P-----~~v~~~~~t~ 699 (1304)
T KOG1114|consen 633 VQCPEYLMLANQGRGINVRVDPTGLA-PGVHYTE-VLGYDTAN-----PSRGPLFRIPVTV-IKP-----KVVANDQYTL 699 (1304)
T ss_pred eeCchhheeccCCceeEEEECCcCCC-CCcceEE-EEEeecCC-----cccCceEEeeeEE-Ecc-----ccccCCCCcc
Confidence 21 1222567888887654 4443222 23344322 2466678999993 444 3344566655
Q ss_pred CCCC----CCCCCCCCCCCCC------------CCCCCCCCCCCCcHHHHHHHHHhcc
Q psy1075 351 LRYP----QGYFPRDNLKMKN------------DPLDWNGDHVHTNFKDLYQHLRNIG 392 (624)
Q Consensus 351 ~~yP----~gy~prD~l~~~~------------d~~dw~gDh~htNf~~~~~~lr~~g 392 (624)
-+=+ ||-|-|+.+..-. +--+=+-=-+|||.-.--+.+|+.-
T Consensus 700 ~f~~~~F~pg~i~R~FievP~gATwAeitmrst~~e~~~rf~iht~q~~p~~~~r~~e 757 (1304)
T KOG1114|consen 700 RFVSVEFEPGLIERRFIEVPEGATWAEITMRSTSLESTNRFWIHTNQLIPQRKLREAE 757 (1304)
T ss_pred ccccccccCCceeeeeEecCCCcceEEEEEEecCccccceEEEEeeeecchhhccccc
Confidence 5544 8999999887553 2122233347888766666666543
No 51
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=98.37 E-value=1.7e-07 Score=102.74 Aligned_cols=49 Identities=33% Similarity=0.459 Sum_probs=42.4
Q ss_pred ceeccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhcccccC
Q psy1075 139 GCRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNITRP 188 (624)
Q Consensus 139 g~~~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~tA~~l 188 (624)
++..++|||||||||||++|||+|..++.. ..++|++||++|++||+++
T Consensus 364 ~~~~~sGTSmAaP~VAG~aALllSa~k~~~-~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 364 GSQLMNGTSMSSPNACGGIALLLSGLKAEG-IPYTPYSVRRALENTAKKL 412 (412)
T ss_pred CeEEecccHHHHHHHHHHHHHHHhhhhhcC-CCCCHHHHHHHHHHhCccC
Confidence 578899999999999999999999765332 3689999999999999864
No 52
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=7.8e-06 Score=86.96 Aligned_cols=63 Identities=32% Similarity=0.373 Sum_probs=48.9
Q ss_pred eeccCcccccchhHHHHHHHHHhcCCCCCCCCCChHhhhhhhhccccc--CCCCCCcccceeeeccccc
Q psy1075 140 CRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNITR--PIGSRVPFCAGELNVNPQS 206 (624)
Q Consensus 140 ~~~lSGTSmAAP~VAGaaALLlS~~P~~~~~~lspaqVkq~L~~tA~~--l~~~~~~~G~G~lnl~~a~ 206 (624)
+..++||||++|+|+|.+|++.+..|. .+.+.+++..+..++.. ........+.|..+.....
T Consensus 355 ~~~~~Gts~a~p~v~g~aal~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (508)
T COG1404 355 YVTLSGTSMAAPHVSGVAALVLSANPN----ELTPAQVRNLIVTTAGLTPLSGVDNLVGGGLANLDAAA 419 (508)
T ss_pred eEeeccccccccHHHHHHHHHHccCcc----cCCHHHHHHHHhhccccccCCccccccccCcccccccc
Confidence 688899999999999999999999983 47789999998888873 4334445566655555443
No 53
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.84 E-value=8.1e-06 Score=83.74 Aligned_cols=46 Identities=28% Similarity=0.351 Sum_probs=36.0
Q ss_pred ceeccCcccccchhHHHHHHHHHhcCCCCCC-CCCChHhhhhhhhcc
Q psy1075 139 GCRTLSGTSVASPVVAGVVALLASGLKHRPA-GHINPASMKQGPVSN 184 (624)
Q Consensus 139 g~~~lSGTSmAAP~VAGaaALLlS~~P~~~~-~~lspaqVkq~L~~t 184 (624)
++..+||||||||||||++|||++++|.+.+ ...+-.+++.+|..+
T Consensus 200 ~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 200 KDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred ceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 4778999999999999999999999997663 344446666665543
No 54
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=97.30 E-value=0.001 Score=68.53 Aligned_cols=104 Identities=24% Similarity=0.415 Sum_probs=78.5
Q ss_pred CCCCCcHHHHHHHHHhcceEEEEcCCCccccccccccchhhhhhhhhcccceeecccCceeeeecCCCeeEEEEecCCCC
Q psy1075 375 DHVHTNFKDLYQHLRNIGYYIEVLGTPFTCFDARHYGVLLLDLYQHLRNIGYYIEVLGTPFTCFDARHYGVLLLVDPEEE 454 (624)
Q Consensus 375 Dh~htNf~~~~~~lr~~g~~vevl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tc~~~~~yg~llivD~E~e 454 (624)
++.=+.+..+-+.|++. |=|+.+ .+ . .+. . +.++..|+|+.|..+
T Consensus 165 ~~~~~~~~~l~~~L~~~-y~V~~~--~l---------------~-------------~~~---I-P~~~d~Lvi~~P~~~ 209 (271)
T PF09822_consen 165 NSQSTSYSSLKSLLEKN-YDVEEL--NL---------------A-------------NEE---I-PDDADVLVIAGPKTD 209 (271)
T ss_pred ccCcchHHHHHHHHHhc-Cceeec--CC---------------c-------------ccc---c-CCCCCEEEEECCCCC
Confidence 33445778899999999 988888 11 0 111 1 467889999999999
Q ss_pred CCHHHHHHHHHHHHhcCccEEEEeeecchhhhhhceecccccccceeccCCCCCcchhhhhhhhhcccccCeE
Q psy1075 455 YHREEIDKLRRDVEQDGLALIVLADWYNTDVMRKIKFYDENTRQWWLPETGGSNIPALNELLAVHGIRLGDRV 527 (624)
Q Consensus 455 ~~~~e~~~l~~~v~~~gl~~iv~~dWy~~~~~~~~~f~d~nt~~~w~p~tgg~nvPalN~lL~~~~i~~g~~v 527 (624)
|.++|+.+|.+.+ .+|=+|+++.|.+..+.-.. |. +++..-+-||+||..|||.+.+.+
T Consensus 210 ls~~e~~~l~~yl-~~GG~ll~~~d~~~~~~~~~-----------~~--~~~~~~~~L~~lL~~~Gi~~~~~~ 268 (271)
T PF09822_consen 210 LSEEELYALDQYL-MNGGKLLILLDPFSVELQGL-----------WA--GGAQRDSNLNDLLEEYGIRINPGL 268 (271)
T ss_pred CCHHHHHHHHHHH-HcCCeEEEEECCcccccccc-----------cc--cccccccCHHHHHHHcCCEeCCCE
Confidence 9999999999999 68889999999996553211 11 111127889999999999998865
No 55
>KOG1153|consensus
Probab=96.08 E-value=0.0028 Score=69.86 Aligned_cols=46 Identities=35% Similarity=0.369 Sum_probs=34.3
Q ss_pred ccCCcchhhHHHHHHHHHHHhcccCCC----CCCCCHHHHHHHHHhhccc
Q psy1075 3 TLSGTSVASPVVAGVVALLASGLKHRP----AGHINPASMKQGLMASARR 48 (624)
Q Consensus 3 ~mSGTSMAaP~VAG~aALLls~~~~~~----~p~ltpaqIk~~L~~tA~~ 48 (624)
++||||||+|||||++|.+++...... +...++.++|..++.-..+
T Consensus 413 ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~~ 462 (501)
T KOG1153|consen 413 ILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKTQ 462 (501)
T ss_pred eeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhccccc
Confidence 689999999999999999999652110 0234788888877776654
No 56
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=96.07 E-value=0.02 Score=47.44 Aligned_cols=63 Identities=29% Similarity=0.445 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcceEEEEcCCCccccccccccchhhhhhhhhcccceeecccCceeeeecCCCeeEEEEecCCCCCC-HHH
Q psy1075 381 FKDLYQHLRNIGYYIEVLGTPFTCFDARHYGVLLLDLYQHLRNIGYYIEVLGTPFTCFDARHYGVLLLVDPEEEYH-REE 459 (624)
Q Consensus 381 f~~~~~~lr~~g~~vevl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tc~~~~~yg~llivD~E~e~~-~~e 459 (624)
.+.+|+.|++.|+-||.. ..|+.-.+ ..-+|||+++|...+. ++|
T Consensus 7 ~~a~~~~L~~~g~~v~~~---------------------------------~~~~~~l~-~~~~tll~i~~~~~~~~~~~ 52 (70)
T PF14258_consen 7 TYALYQLLEEQGVKVERW---------------------------------RKPYEALE-ADDGTLLVIGPDLRLSEPEE 52 (70)
T ss_pred HHHHHHHHHHCCCeeEEe---------------------------------cccHHHhC-CCCCEEEEEeCCCCCCchHH
Confidence 578999999999999988 22333222 3678999999998899 599
Q ss_pred HHHHHHHHHhcCccEEEEe
Q psy1075 460 IDKLRRDVEQDGLALIVLA 478 (624)
Q Consensus 460 ~~~l~~~v~~~gl~~iv~~ 478 (624)
++.|.+-| ++|=.|||.|
T Consensus 53 ~~~l~~~v-~~G~~lvl~a 70 (70)
T PF14258_consen 53 AEALLEWV-EAGNTLVLAA 70 (70)
T ss_pred HHHHHHHH-HcCCEEEEeC
Confidence 99999999 5886666543
No 57
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.014 Score=62.27 Aligned_cols=63 Identities=33% Similarity=0.324 Sum_probs=47.8
Q ss_pred cccCCcchhhHHHHHHHHHHHhcccCCCCC-CCCHHHHHHHHHhhccc-CCCCcccccCccchhhhHHhh
Q psy1075 2 RTLSGTSVASPVVAGVVALLASGLKHRPAG-HINPASMKQGLMASARR-LPGVNMFEQGSGKIDLLRAYQ 69 (624)
Q Consensus 2 ~~mSGTSMAaP~VAG~aALLls~~~~~~~p-~ltpaqIk~~L~~tA~~-l~~~~~~~~G~G~INa~rAvq 69 (624)
..++|||||+|||+|++||+++.. + .+++.+++..+..++.. .........+.|..+......
T Consensus 356 ~~~~Gts~a~p~v~g~aal~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 356 VTLSGTSMAAPHVSGVAALVLSAN-----PNELTPAQVRNLIVTTAGLTPLSGVDNLVGGGLANLDAAAT 420 (508)
T ss_pred EeeccccccccHHHHHHHHHHccC-----cccCCHHHHHHHHhhccccccCCccccccccCccccccccc
Confidence 468999999999999999999975 6 69999999999998874 222333455666655554433
No 58
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.10 E-value=0.071 Score=61.00 Aligned_cols=78 Identities=19% Similarity=0.359 Sum_probs=58.4
Q ss_pred cCCCeeEEEEecCCCCCCHHHHHHHHHHHHhcCccEEEEeeecchhhhhhceecccccccceeccCCCC----Ccchhhh
Q psy1075 439 DARHYGVLLLVDPEEEYHREEIDKLRRDVEQDGLALIVLADWYNTDVMRKIKFYDENTRQWWLPETGGS----NIPALNE 514 (624)
Q Consensus 439 ~~~~yg~llivD~E~e~~~~e~~~l~~~v~~~gl~~iv~~dWy~~~~~~~~~f~d~nt~~~w~p~tgg~----nvPalN~ 514 (624)
|++++-.|+|+.|.+.|.++|+.+|...+ .+|=++++|.|=.+.++- .+ .+..|+. .-+-|++
T Consensus 231 ~l~d~d~LvI~~P~~~ls~~e~~~Ldqfl-~~GG~ll~~~dp~~~~~~-~~-----------~~~~g~~~~~~~~~~L~~ 297 (552)
T TIGR03521 231 DLKKFDLIVIAKPTEAFSEREKYILDQYI-MNGGKALFLVDAVAMEMD-SL-----------YNGDGATFALPRDLNLDD 297 (552)
T ss_pred cccCcCEEEEeCCCccCCHHHHHHHHHHH-HcCCeEEEEecCcccccc-cc-----------cccCCccccCCCCCCHHH
Confidence 34688999999999999999999999999 799999999986543221 10 1111211 1267999
Q ss_pred hhhhhcccccCeE-Ee
Q psy1075 515 LLAVHGIRLGDRV-YE 529 (624)
Q Consensus 515 lL~~~~i~~g~~v-~~ 529 (624)
||..|||.+.+.+ +|
T Consensus 298 Ll~~~Gi~~~~~~V~D 313 (552)
T TIGR03521 298 LLFKYGIRINPDLVED 313 (552)
T ss_pred HHHHhCeEeCcCeEec
Confidence 9999999998655 44
No 59
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=91.83 E-value=0.11 Score=56.33 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=21.2
Q ss_pred ccCCcchhhHHHHHHHHHHHhcc
Q psy1075 3 TLSGTSVASPVVAGVVALLASGL 25 (624)
Q Consensus 3 ~mSGTSMAaP~VAG~aALLls~~ 25 (624)
...|||+|||++||++||+-+..
T Consensus 276 ~~gGTS~aaP~~Ag~~Al~n~~~ 298 (361)
T cd04056 276 LVGGTSAAAPLFAGLIALINQAR 298 (361)
T ss_pred eeCCccHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999965
No 60
>KOG3526|consensus
Probab=89.21 E-value=0.099 Score=57.02 Aligned_cols=68 Identities=24% Similarity=0.263 Sum_probs=52.7
Q ss_pred ccCCcchhhHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHhhcccCC---CC------------c-ccccCccchhhhH
Q psy1075 3 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLP---GV------------N-MFEQGSGKIDLLR 66 (624)
Q Consensus 3 ~mSGTSMAaP~VAG~aALLls~~~~~~~p~ltpaqIk~~L~~tA~~l~---~~------------~-~~~~G~G~INa~r 66 (624)
.-||||.|+|-.||+-||.+++. |.++=.+|..+-.-+..+.. +. . +...|+|.+|+..
T Consensus 380 ~hsgtsaaapeaagvfalalean-----p~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvldaga 454 (629)
T KOG3526|consen 380 SHSGTSAAAPEAAGVFALALEAN-----PSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGA 454 (629)
T ss_pred ccCCccccCccccceeeeeeccC-----CCcchhhhhheeeeecccchhhcccceEEEeccccceeeecccccccccHHH
Confidence 67999999999999999999986 88888888877666666642 11 1 1245999999998
Q ss_pred HhhhhcccC
Q psy1075 67 AYQILNSYT 75 (624)
Q Consensus 67 Avq~l~s~t 75 (624)
-+.+...+.
T Consensus 455 mv~lak~wk 463 (629)
T KOG3526|consen 455 MVMLAKAWK 463 (629)
T ss_pred HHHHHHHhc
Confidence 888776654
No 61
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=88.67 E-value=0.33 Score=53.99 Aligned_cols=24 Identities=38% Similarity=0.761 Sum_probs=22.2
Q ss_pred ccccCccEEEEeecCCcccccccc
Q psy1075 90 GIRGSGVKVAVFDTGLSSGHTGFN 113 (624)
Q Consensus 90 G~tG~GV~VAVIDTGVd~~HPdf~ 113 (624)
++-|+||+|||+|||||..||.|.
T Consensus 19 ~~dgr~v~iai~dtgvd~~~~~lq 42 (412)
T cd04857 19 EYDGRGVLIAILDTGVDPGAPGLQ 42 (412)
T ss_pred CCCCCCcEEEEecCCCCCCCCccc
Confidence 467999999999999999999995
No 62
>KOG3525|consensus
Probab=87.51 E-value=0.79 Score=51.33 Aligned_cols=55 Identities=27% Similarity=0.312 Sum_probs=38.7
Q ss_pred ccccccccccCccEEEEeecCCcccccccccccccccc------cC--CC--CccCCCCCcceee
Q psy1075 84 SLFLPLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDW------TN--EN--TLEDKLGHGTFVA 138 (624)
Q Consensus 84 ta~w~~G~tG~GV~VAVIDTGVd~~HPdf~~v~~~~~~------t~--~~--~~~D~~GHGT~VA 138 (624)
...|..+++|+++.|++.|.|+...||+.+........ .+ .. +......|||-||
T Consensus 23 ~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~~~~~~s~d~~~~~~~p~~~~~~~~~~~~g~~Ca 87 (431)
T KOG3525|consen 23 QNAWCKGYTGTRVSVTILDDGLECSHPDLRNNYDPLGSYDVNRHDNDPEPRCDGTNENKHGTRCA 87 (431)
T ss_pred eeccccCCCCCceEEEEeeccccccCcccccccCcceeEeeecCCCCcccccCCCCccccCCCCC
Confidence 34799999999999999999999999998854322111 11 11 1223578888888
No 63
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=84.29 E-value=0.51 Score=51.11 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=24.7
Q ss_pred ceeccCcccccchhHHHHHHHHHhcCC
Q psy1075 139 GCRTLSGTSVASPVVAGVVALLASGLK 165 (624)
Q Consensus 139 g~~~lSGTSmAAP~VAGaaALLlS~~P 165 (624)
.+....|||+|||++||++||+-+...
T Consensus 273 ~~~~~gGTS~aaP~~Ag~~Al~n~~~~ 299 (361)
T cd04056 273 QWYLVGGTSAAAPLFAGLIALINQARL 299 (361)
T ss_pred eEEeeCCccHHHHHHHHHHHHHHHHhh
Confidence 567789999999999999999999876
No 64
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=75.90 E-value=5.2 Score=39.92 Aligned_cols=60 Identities=27% Similarity=0.402 Sum_probs=33.6
Q ss_pred cHHHHHHHHHhcceEEEEcCCCccccccccccchhhhhhhhhcccceeecccCceeeeecCCCeeEEEEecCCCCCCHHH
Q psy1075 380 NFKDLYQHLRNIGYYIEVLGTPFTCFDARHYGVLLLDLYQHLRNIGYYIEVLGTPFTCFDARHYGVLLLVDPEEEYHREE 459 (624)
Q Consensus 380 Nf~~~~~~lr~~g~~vevl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tc~~~~~yg~llivD~E~e~~~~e 459 (624)
+++.+|..|+++|+=|++. +. .. |++.|-.|++-. -.-+.+++
T Consensus 31 ~~~~~y~al~~~gi~vDvv--~~-----------------------------~~-----dL~~Ykllv~P~-~~~l~~~~ 73 (207)
T PF08532_consen 31 QVRGWYRALRELGIPVDVV--SP-----------------------------DD-----DLSGYKLLVLPS-LYILSPEF 73 (207)
T ss_dssp HHHHHHHHHHTTT--EEEE---T-----------------------------TS-------TT-SEEEES---SC--HHH
T ss_pred HHHHHHHHHHHcCCceEEe--cC-----------------------------cC-----CcccCcEEEEee-EEEEChHH
Confidence 4678999999999999999 10 11 788898655443 35677888
Q ss_pred HHHHHHHHHhcCccEEEE
Q psy1075 460 IDKLRRDVEQDGLALIVL 477 (624)
Q Consensus 460 ~~~l~~~v~~~gl~~iv~ 477 (624)
.++|++.| ++|=.||+-
T Consensus 74 ~~~L~~yV-~~GG~li~~ 90 (207)
T PF08532_consen 74 AERLRAYV-ENGGTLILT 90 (207)
T ss_dssp ---HHHHH-T-SS-EEE-
T ss_pred HHHHHHHH-HCCCEEEEE
Confidence 89999999 666677754
No 65
>KOG3861|consensus
Probab=74.41 E-value=11 Score=40.84 Aligned_cols=90 Identities=24% Similarity=0.443 Sum_probs=68.5
Q ss_pred cHHHHHHHHHhcceEEEEcCCCccccccccccchhhhhhhhhcccceeecccCceeeeecCCCeeEEEEecCCCCCCHHH
Q psy1075 380 NFKDLYQHLRNIGYYIEVLGTPFTCFDARHYGVLLLDLYQHLRNIGYYIEVLGTPFTCFDARHYGVLLLVDPEEEYHREE 459 (624)
Q Consensus 380 Nf~~~~~~lr~~g~~vevl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tc~~~~~yg~llivD~E~e~~~~e 459 (624)
-||-|..+||+ .+-||+. ..+++---+...-.+++--|.+.|..+|
T Consensus 24 Gfr~m~rkLks-nw~ve~n---------------------------------~~ei~~e~L~~Vk~~i~agP~~~Ft~~E 69 (438)
T KOG3861|consen 24 GFRMMHRKLKS-NWNVEQN---------------------------------DAEIRMERLARVKIFILAGPQDRFTEDE 69 (438)
T ss_pred hHHHHHHHHhh-ccceeec---------------------------------cchhhhhhhcceeEEEecCcccccchhH
Confidence 48999999984 3667887 5666666677788899999999999999
Q ss_pred HHHHHHHHHhcCccEEEEeeecchhhhhhceecccccccceeccCCCCC--cchhhhhhhhhcccc-cCeEE
Q psy1075 460 IDKLRRDVEQDGLALIVLADWYNTDVMRKIKFYDENTRQWWLPETGGSN--IPALNELLAVHGIRL-GDRVY 528 (624)
Q Consensus 460 ~~~l~~~v~~~gl~~iv~~dWy~~~~~~~~~f~d~nt~~~w~p~tgg~n--vPalN~lL~~~~i~~-g~~v~ 528 (624)
++.|++.|+. |-+|+|..- -||-- --.+|.+|..|||.. ||.|.
T Consensus 70 fevlkkyve~-GGsl~vllG------------------------EGGE~rf~tnvNf~le~YGI~vN~DtVv 116 (438)
T KOG3861|consen 70 FEVLKKYVEV-GGSLVVLLG------------------------EGGEPRFNTNVNFFLEQYGIYVNGDTVV 116 (438)
T ss_pred HHHHHHHHhc-CCeEEEEec------------------------CCCCccccccHHHHHHHhCeEecCCcee
Confidence 9999999955 777777532 23321 145899999999965 55553
No 66
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=74.27 E-value=1.2 Score=46.05 Aligned_cols=40 Identities=20% Similarity=0.049 Sum_probs=26.8
Q ss_pred EEeecCCcccccccc-cccccccccCCCCccCCCCCcceeec
Q psy1075 99 AVFDTGLSSGHTGFN-NVAERTDWTNENTLEDKLGHGTFVAG 139 (624)
Q Consensus 99 AVIDTGVd~~HPdf~-~v~~~~~~t~~~~~~D~~GHGT~VAg 139 (624)
.++|.+....+|.+. .......+... ...|..||||||||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~HGThVAg 45 (247)
T cd07488 5 FLWDKNDSKNAPNTLAAVFIRNNPRFG-RNNTFDDHATLVAS 45 (247)
T ss_pred cccccccccCccceeeeeecccccccc-CCCCCCCHHHHHHH
Confidence 467888777777553 23344444444 56689999999994
No 67
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=72.39 E-value=14 Score=33.31 Aligned_cols=53 Identities=9% Similarity=0.132 Sum_probs=35.7
Q ss_pred EEEEeccceeeeeceEEEEEEEEccCc-cC--ceeEEEEEEEEEEECCCCCCCCceeeeEEEEEE
Q psy1075 268 EISMTYSDILWPWSGYLAVHISVSAAA-AA--WQGTVQGHIEVTVESPPLEGEEGVRRSTVKLAV 329 (624)
Q Consensus 268 ~v~~s~s~~~wP~~G~lav~~tv~~~~-~~--~~G~~~G~v~ltv~s~~~~~~~~~~~~~v~~p~ 329 (624)
.+.++-..+++|..+...|.++++... .. ...+++|+|.|+-... . .++.||+
T Consensus 56 ~~~~~~~~vTV~ag~s~~v~vti~~p~~~~~~~~~~~eG~I~~~~~~~-------~--~~lsIPy 111 (112)
T PF06280_consen 56 TVSFSPDTVTVPAGQSKTVTVTITPPSGLDASNGPFYEGFITFKSSDG-------E--PDLSIPY 111 (112)
T ss_dssp EEE---EEEEE-TTEEEEEEEEEE--GGGHHTT-EEEEEEEEEESSTT-------S--EEEEEEE
T ss_pred eEEeCCCeEEECCCCEEEEEEEEEehhcCCcccCCEEEEEEEEEcCCC-------C--EEEEeee
Confidence 688888999999999999999999944 33 2789999999964331 1 5677775
No 68
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=60.95 E-value=29 Score=32.55 Aligned_cols=56 Identities=29% Similarity=0.391 Sum_probs=43.2
Q ss_pred CcHHHHHHHHHhcceEEEEcCCCccccccccccchhhhhhhhhcccceeecccCceeeeecCCCeeEEEEecCCCCCCHH
Q psy1075 379 TNFKDLYQHLRNIGYYIEVLGTPFTCFDARHYGVLLLDLYQHLRNIGYYIEVLGTPFTCFDARHYGVLLLVDPEEEYHRE 458 (624)
Q Consensus 379 tNf~~~~~~lr~~g~~vevl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tc~~~~~yg~llivD~E~e~~~~ 458 (624)
--++..|..|++.|+-++++. | . -|++.|-.|++=+.. -..++
T Consensus 26 ~~~~~~~~~l~~~gi~~d~v~-~------------------------------~-----~~l~~y~~vi~P~~~-~~~~~ 68 (154)
T cd03143 26 DLALALYRALRELGIPVDVVP-P------------------------------D-----ADLSGYKLVVLPDLY-LLSDA 68 (154)
T ss_pred HHHHHHHHHHHHCCCCEEEEC-C------------------------------C-----CCcccCCEEEECchh-cCCHH
Confidence 357899999999999999990 1 1 234578888777765 36789
Q ss_pred HHHHHHHHHHhcC
Q psy1075 459 EIDKLRRDVEQDG 471 (624)
Q Consensus 459 e~~~l~~~v~~~g 471 (624)
+.++|++.|+..|
T Consensus 69 ~~~~l~~~v~~GG 81 (154)
T cd03143 69 TAAALRAYVENGG 81 (154)
T ss_pred HHHHHHHHHHCCC
Confidence 9999999997666
No 69
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=52.39 E-value=20 Score=32.17 Aligned_cols=50 Identities=20% Similarity=0.320 Sum_probs=40.1
Q ss_pred CCeeEEEEecCC--CCCCHHHHHHHHHHHHhcCccEEEEeeecchhhhhhce
Q psy1075 441 RHYGVLLLVDPE--EEYHREEIDKLRRDVEQDGLALIVLADWYNTDVMRKIK 490 (624)
Q Consensus 441 ~~yg~llivD~E--~e~~~~e~~~l~~~v~~~gl~~iv~~dWy~~~~~~~~~ 490 (624)
++|=+++|+||+ ||=..+.+++++.-+.++|-.++-+-+|=-.+++-.|+
T Consensus 6 r~YE~~~Il~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~ 57 (97)
T CHL00123 6 NKYETMYLLKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKIN 57 (97)
T ss_pred cceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcC
Confidence 679999999998 44455567778888889999999999998766666555
No 70
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=52.05 E-value=24 Score=33.23 Aligned_cols=88 Identities=18% Similarity=0.278 Sum_probs=56.3
Q ss_pred eecCCCeeEEEEecCC----CCCCHHHHHHHHHHHHhcCccEEEEeeecchhhhhhceecccccccceeccCCCCCcchh
Q psy1075 437 CFDARHYGVLLLVDPE----EEYHREEIDKLRRDVEQDGLALIVLADWYNTDVMRKIKFYDENTRQWWLPETGGSNIPAL 512 (624)
Q Consensus 437 c~~~~~yg~llivD~E----~e~~~~e~~~l~~~v~~~gl~~iv~~dWy~~~~~~~~~f~d~nt~~~w~p~tgg~nvPal 512 (624)
|+|. =|||+.-+.+ .+..++-+++|++.. +.|-.+++++-=--..+......++.+| .|..
T Consensus 5 ~~Di--DGTL~~~~~~~y~~~~~~~~~ie~L~~l~-~~G~~IiiaTGR~~~~~~~n~~~i~~~~------------~~~t 69 (126)
T TIGR01689 5 VMDL--DNTITLTENGDYANVAPILAVIEKLRHYK-ALGFEIVISSSRNMRTYEGNVGKINIHT------------LPII 69 (126)
T ss_pred EEeC--CCCcccCCCCcccccccCHHHHHHHHHHH-HCCCEEEEECCCCchhhhccccccchhh------------HHHH
Confidence 4555 3788532221 234566777777655 7888888877433333222233345555 7899
Q ss_pred hhhhhhhcccccCeEEeee-------EEeCCeeEE
Q psy1075 513 NELLAVHGIRLGDRVYEGS-------ITMNDRTLQ 540 (624)
Q Consensus 513 N~lL~~~~i~~g~~v~~g~-------~~~~~~~~~ 540 (624)
-++|..++|-+ |.++-|. |.+.|+.+.
T Consensus 70 ~~wL~k~~ipY-d~l~~~kp~~~~~~~~~dD~~ir 103 (126)
T TIGR01689 70 ILWLNQHNVPY-DEIYVGKPWCGHDGFYVDDRAIR 103 (126)
T ss_pred HHHHHHcCCCC-ceEEeCCCcCCCCCceecchhhC
Confidence 99999999999 8888776 667776544
No 71
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=50.85 E-value=36 Score=34.90 Aligned_cols=38 Identities=34% Similarity=0.469 Sum_probs=30.9
Q ss_pred cCCCeeEEEEe-cCC-CCCCHHHHHHHHHHHHhcCccEEEE
Q psy1075 439 DARHYGVLLLV-DPE-EEYHREEIDKLRRDVEQDGLALIVL 477 (624)
Q Consensus 439 ~~~~yg~lliv-D~E-~e~~~~e~~~l~~~v~~~gl~~iv~ 477 (624)
+++.|-.|++. +.- +++.++..++|++.| ++|.++|+.
T Consensus 55 ~L~~~D~lV~~~~~~~~~l~~eq~~~l~~~V-~~GgGlv~l 94 (215)
T cd03142 55 VLAETDVLLWWGHIAHDEVKDEIVERVHRRV-LDGMGLIVL 94 (215)
T ss_pred HHhcCCEEEEeCCCCcCcCCHHHHHHHHHHH-HcCCCEEEE
Confidence 46678777763 555 899999999999999 888888875
No 72
>PF01974 tRNA_int_endo: tRNA intron endonuclease, catalytic C-terminal domain; InterPro: IPR006677 This entry represents a 3-layer alpha/beta/alpha domain found as the catalytic domain at the C-terminal in homotetrameric tRNA-intron endonucleases [], and as domains 2 and 4 (C-terminal) in the homodimeric enzymes []. tRNA-intron endonucleases (3.1.27.9 from EC) remove tRNA introns by cleaving pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-hydroxyl termini []. These enzymes recognise a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp []. Although homotetrameric enzymes contain four active sites, only two participate in the cleavage, and should therefore, be considered as a dimer of dimers.; GO: 0000213 tRNA-intron endonuclease activity, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 3IEY_B 3IF0_X 2CV8_A 3P1Z_B 3AJV_B 2GJW_D 1R0V_A 3P1Y_C 1R11_B 1RLV_A ....
Probab=45.58 E-value=87 Score=26.98 Aligned_cols=63 Identities=24% Similarity=0.394 Sum_probs=38.2
Q ss_pred HHHHHHHhcceEEEEcCCCccccccccccchhhhhhhhhcccceeecccCceeeee--c----CCCeeEEEEecCCCCCC
Q psy1075 383 DLYQHLRNIGYYIEVLGTPFTCFDARHYGVLLLDLYQHLRNIGYYIEVLGTPFTCF--D----ARHYGVLLLVDPEEEYH 456 (624)
Q Consensus 383 ~~~~~lr~~g~~vevl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tc~--~----~~~yg~llivD~E~e~~ 456 (624)
..|.+||+.||+|--= .-| |..|.-. | -++|..++ ++.++++.
T Consensus 6 ~vY~dLr~rG~~v~~G-~kf-----------------------------G~df~vY~~~p~~~Hs~~~V~v-~~~~~~~~ 54 (85)
T PF01974_consen 6 AVYRDLRSRGYVVKPG-IKF-----------------------------GCDFLVYPGDPGRYHSSYLVHV-LSEDDPIS 54 (85)
T ss_dssp HHHHHHHHTT-EEEEE-GGG-----------------------------TSSEEEETSCTTSSSSSEEEEE-EETTSEEE
T ss_pred HHHHHHHHCCCEECcc-CcC-----------------------------CceEEEEeCCCCCcCceEEEEE-EcCCCccC
Confidence 5799999999999644 111 3333333 1 25566554 56677888
Q ss_pred HHHHHHHHHHHHhcCccEEE
Q psy1075 457 REEIDKLRRDVEQDGLALIV 476 (624)
Q Consensus 457 ~~e~~~l~~~v~~~gl~~iv 476 (624)
..|+..+-|-...-.-.+|+
T Consensus 55 ~~~l~~~~Rla~~v~K~~il 74 (85)
T PF01974_consen 55 WSDLIALVRLATSVKKELIL 74 (85)
T ss_dssp HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhhcCcEEEE
Confidence 88887776655555554444
No 73
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=39.96 E-value=61 Score=32.67 Aligned_cols=51 Identities=20% Similarity=0.396 Sum_probs=31.7
Q ss_pred CceeeeecCCCeeEEEEecCCCCCCH----------HHHHHHHHHHHhcCccEEEE-eeecchh
Q psy1075 432 GTPFTCFDARHYGVLLLVDPEEEYHR----------EEIDKLRRDVEQDGLALIVL-ADWYNTD 484 (624)
Q Consensus 432 ~~~~tc~~~~~yg~llivD~E~e~~~----------~e~~~l~~~v~~~gl~~iv~-~dWy~~~ 484 (624)
.+|.|+-..+. +|||||.-..|++ +-+..+++-++..+...|+| .||+...
T Consensus 3 ~~~~~~~~~~~--ALlVIDmQndF~~~g~l~~~~~~~iv~~i~~l~~~~~~~~Vi~~~d~h~~~ 64 (212)
T PTZ00331 3 TSCITVSSTND--ALIIVDVQNDFCKGGSLAVPDAEEVIPVINQVRQSHHFDLVVATQDWHPPN 64 (212)
T ss_pred ccccccCCCCC--EEEEEcCCCCCCCCCccCCCCHHHHHHHHHHHHHhcCCCEEEEecCcCCCC
Confidence 45666554433 9999999999984 23444555454334444554 4998664
No 74
>KOG1263|consensus
Probab=38.28 E-value=87 Score=36.70 Aligned_cols=145 Identities=19% Similarity=0.246 Sum_probs=88.0
Q ss_pred CeeEEEEecCCCCCCHHHHHHHHHHHHhcCccEEEEeeecchhhhhhceecccccccceeccCC----CCCcchhh----
Q psy1075 442 HYGVLLLVDPEEEYHREEIDKLRRDVEQDGLALIVLADWYNTDVMRKIKFYDENTRQWWLPETG----GSNIPALN---- 513 (624)
Q Consensus 442 ~yg~llivD~E~e~~~~e~~~l~~~v~~~gl~~iv~~dWy~~~~~~~~~f~d~nt~~~w~p~tg----g~nvPalN---- 513 (624)
-||.|+|-+++..-.|-+ ..++=-.|+++|||+....+.++-+.+.|+.+=.+..| |-+-+--|
T Consensus 139 ~~G~liI~~~~~~p~pf~--------~pd~E~~ill~dW~~~~~~~~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~~~~ 210 (563)
T KOG1263|consen 139 VFGALIINPRPGLPVPFP--------KPDKEFTILLGDWYKNLNHKNLKNFLDRTGALPNPSDGVLINGRSGFLYNCTPT 210 (563)
T ss_pred ceeEEEEcCCccCCCCCC--------CCCceeEEEeEeeccccCHHHHHHhhccCCCCCCCCCceEECCCCCcccCceeE
Confidence 499999999985332222 23333469999999975566666666666663331111 11101001
Q ss_pred --------hhhhhhcccccCeEEeeeEEeCCeeEEe--ecCCceeecCCCCeEEEEEccccccccc-CCCCCCCceeEEe
Q psy1075 514 --------ELLAVHGIRLGDRVYEGSITMNDRTLQY--MSGTSIVQFPTSGVLVGAKLNNQGKKGV-NPNAPMAGWSLRW 582 (624)
Q Consensus 514 --------~lL~~~~i~~g~~v~~g~~~~~~~~~~~--~sg~~i~~fp~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~ 582 (624)
=+|+-.+.++-..++ |.|++|+|.. +=|+.+..|..+.+.+.. -|.-.+| ..+.+. + -.|
T Consensus 211 l~v~pGktY~lRiiN~g~~~~l~---F~I~~H~ltvVe~Dg~y~~p~~~~~l~i~~---GQ~~~vLvtadq~~-~--~Y~ 281 (563)
T KOG1263|consen 211 LTVEPGKTYRLRIINAGLNTSLN---FSIANHQLTVVEVDGAYTKPFTTDSLDIHP---GQTYSVLLTADQSP-G--DYY 281 (563)
T ss_pred EEEcCCCEEEEEEEccccccceE---EEECCeEEEEEEecceEEeeeeeceEEEcC---CcEEEEEEeCCCCC-C--cEE
Confidence 133444445555555 9999998775 568999999988887765 4555554 333333 2 556
Q ss_pred eeeeeeEEE-----EEeccceeeeee
Q psy1075 583 LSTSWRFTV-----FVSGTGYTRYMS 603 (624)
Q Consensus 583 ~~~~~~~~~-----~~~~~~~~~~~~ 603 (624)
...+=||+- -+.++|..+|-.
T Consensus 282 i~~~~~~~~~~~~~~~t~~~~l~y~~ 307 (563)
T KOG1263|consen 282 IAASPYFDASNVPFNLTTTGILRYSG 307 (563)
T ss_pred EEEEeeeccCCcceeeeEEEEEEEeC
Confidence 666666652 577888888875
No 75
>PLN02373 soluble inorganic pyrophosphatase
Probab=37.96 E-value=37 Score=34.32 Aligned_cols=56 Identities=30% Similarity=0.476 Sum_probs=33.9
Q ss_pred EEEEEEEEECCCCCCCCceeeeEEEEEEEEeeecCCCccccceeeccccCCCCC--CCCCCCCCCCCCCCCC
Q psy1075 302 QGHIEVTVESPPLEGEEGVRRSTVKLAVKANIIPTPPRHKRILWDQYHNLRYPQ--GYFPRDNLKMKNDPLD 371 (624)
Q Consensus 302 ~G~v~ltv~s~~~~~~~~~~~~~v~~p~~~~iip~Ppr~~Rilwdq~h~~~yP~--gy~prD~l~~~~d~~d 371 (624)
.+.+.+.||.|.+...+-+-... +=.|++. |+| |.++.||- ||||+- +..++||||
T Consensus 22 ~~~v~vVIEIP~gs~~KyE~dk~-~g~i~~D---------r~l---~~~~~yP~nYGfIP~T-~~~DgDPLD 79 (188)
T PLN02373 22 PAIFNCVVEITKGSKVKYELDKK-TGLIKVD---------RVL---YSSVVYPHNYGFIPRT-LCEDNDPLD 79 (188)
T ss_pred CCEEEEEEEECCCCCeeEEEccC-CCCEEEe---------eec---ccCCcCCccccccccc-ccCCCCccE
Confidence 36678888887643321110000 0013332 554 67889997 999975 778889988
No 76
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=37.57 E-value=26 Score=33.93 Aligned_cols=40 Identities=25% Similarity=0.454 Sum_probs=32.7
Q ss_pred EEEEecCCCCCCHH-------------HHHHHHHHHHhcCccEEEEeeecchh
Q psy1075 445 VLLLVDPEEEYHRE-------------EIDKLRRDVEQDGLALIVLADWYNTD 484 (624)
Q Consensus 445 ~llivD~E~e~~~~-------------e~~~l~~~v~~~gl~~iv~~dWy~~~ 484 (624)
+||+||.-+.|.++ .|.+|-+..++.|+.||...+||..+
T Consensus 1 ALlvID~Q~~f~~~~~~~~~~~~~~~~ni~~l~~~ar~~~~~Vi~~~~~~~~~ 53 (179)
T cd01015 1 ALLVIDLVEGYTQPGSYLAPGIAAALENVQRLLAAARAAGVPVIHTTVVYDPD 53 (179)
T ss_pred CEEEEEeecceeCCCCccccchHHHHHHHHHHHHHHHHcCCCEEEEEeeECCc
Confidence 48899998888742 26788888889999999999999765
No 77
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=36.67 E-value=37 Score=28.96 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=18.5
Q ss_pred CCeeEEEEecCCCCCCHHHHHHHHHHHHhcCccEEE
Q psy1075 441 RHYGVLLLVDPEEEYHREEIDKLRRDVEQDGLALIV 476 (624)
Q Consensus 441 ~~yg~llivD~E~e~~~~e~~~l~~~v~~~gl~~iv 476 (624)
.+| .+++||+++ +..+||++|++ +|.-||+
T Consensus 25 ~~~-~v~~iD~~~-~~~~~I~~L~~----~G~~vic 54 (74)
T PF03537_consen 25 PDV-DVVVIDLFD-FSKEEIARLKA----QGKKVIC 54 (74)
T ss_dssp SS--SEEEE-SBS---HHHHHHHHH----TT-EEEE
T ss_pred CCC-CEEEECCcc-CCHHHHHHHHH----CCCEEEE
Confidence 445 467899996 88999999764 4766665
No 78
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=33.78 E-value=36 Score=34.58 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=26.5
Q ss_pred ccCCCCCCCCHHHHHHHHHhhcccCCC-CcccccCcc
Q psy1075 25 LKHRPAGHINPASMKQGLMASARRLPG-VNMFEQGSG 60 (624)
Q Consensus 25 ~~~~~~p~ltpaqIk~~L~~tA~~l~~-~~~~~~G~G 60 (624)
......| ++++|||++|+++|+++.. .....+|||
T Consensus 204 ll~~~~p-~~~~~i~~~L~~ta~~~g~~~~d~~~G~G 239 (239)
T cd05561 204 LLLQASP-LAPDDARARLAATAKDLGPPGRDPVFGYG 239 (239)
T ss_pred HHHhcCC-CCHHHHHHHHHHHhhccCCCCcCCCcCCC
Confidence 3445678 9999999999999998842 234567877
No 79
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=33.73 E-value=54 Score=34.88 Aligned_cols=42 Identities=14% Similarity=0.281 Sum_probs=39.0
Q ss_pred ecCCCCCCHHHHHHHHHHHHhcCccEEEEeeecchhhhhhce
Q psy1075 449 VDPEEEYHREEIDKLRRDVEQDGLALIVLADWYNTDVMRKIK 490 (624)
Q Consensus 449 vD~E~e~~~~e~~~l~~~v~~~gl~~iv~~dWy~~~~~~~~~ 490 (624)
+-+|.|-.+.++++|.+.++++++.+|.+-++.+...++.+.
T Consensus 219 ~~~~~e~s~~~l~~l~~~ik~~~i~~If~e~~~~~~~~~~la 260 (303)
T COG0803 219 ISPEAEPSPKDLAKLVDLIKKKNIKAIFVESNVSSKSAETLA 260 (303)
T ss_pred cCcccCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHH
Confidence 577999999999999999999999999999999999988765
No 80
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=33.48 E-value=73 Score=32.81 Aligned_cols=94 Identities=19% Similarity=0.351 Sum_probs=60.1
Q ss_pred eeeccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHhcceEEEEcCCCccccccccccchhhhhhhhhcc
Q psy1075 344 LWDQYHNLRYPQGYFPRDNLKMKNDPLDWNGDHVHTNFKDLYQHLRNIGYYIEVLGTPFTCFDARHYGVLLLDLYQHLRN 423 (624)
Q Consensus 344 lwdq~h~~~yP~gy~prD~l~~~~d~~dw~gDh~htNf~~~~~~lr~~g~~vevl~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (624)
-+|||-+..|-.| -..|...||.-+|=|.-+ | .|+|- ..+|+
T Consensus 21 GfDqF~s~~y~~G------------------------Ad~Ll~~Lr~g~~dv~yM--p--AH~~q---~~FPq------- 62 (254)
T COG5426 21 GFDQFTSVTYHEG------------------------ADPLLKALRGGEYDVTYM--P--AHDAQ---EKFPQ------- 62 (254)
T ss_pred ccccCcceecccC------------------------chHHHHHHhCCCcceEEe--c--hHHHH---Hhcch-------
Confidence 4788888888544 336888999999998888 3 22111 11121
Q ss_pred cceeecccCceeeeecC---CCeeEEEEecCCCCC-----CHHHHHHHHHHHHhcCccEEEEeeecch
Q psy1075 424 IGYYIEVLGTPFTCFDA---RHYGVLLLVDPEEEY-----HREEIDKLRRDVEQDGLALIVLADWYNT 483 (624)
Q Consensus 424 ~~~~~~~~~~~~tc~~~---~~yg~llivD~E~e~-----~~~e~~~l~~~v~~~gl~~iv~~dWy~~ 483 (624)
+-+.+.|.|+ |++|.=-+.=+-+-| -|.-.+.|++.| ++|=+|+.|+-.|+-
T Consensus 63 -------tme~L~~YDaivlSDiGsNt~LL~~~t~~~~k~~Pn~L~likdyV-~~GGGLLMiGGY~SF 122 (254)
T COG5426 63 -------TMEGLDAYDAIVLSDIGSNTLLLQPATWYHSKIVPNRLKLIKDYV-ENGGGLLMIGGYLSF 122 (254)
T ss_pred -------hhhhhcccceEEEeecCCceeeccccceeecccCccHHHHHHHHH-hcCCcEEEEccEEEE
Confidence 1245667776 666643222233333 356678888888 889999999887753
No 81
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=33.43 E-value=58 Score=34.24 Aligned_cols=45 Identities=13% Similarity=0.434 Sum_probs=41.1
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhcCccEEEEeeecchhhhhhce
Q psy1075 446 LLLVDPEEEYHREEIDKLRRDVEQDGLALIVLADWYNTDVMRKIK 490 (624)
Q Consensus 446 llivD~E~e~~~~e~~~l~~~v~~~gl~~iv~~dWy~~~~~~~~~ 490 (624)
++-+.+|.|-.+.++++|.+.++++++.+|+.....+.++++.|.
T Consensus 203 ~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia 247 (286)
T cd01019 203 VFTIDPEIDPGAKRLAKIRKEIKEKGATCVFAEPQFHPKIAETLA 247 (286)
T ss_pred eecCCCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHHHHHH
Confidence 344678999999999999999999999999999999999999885
No 82
>cd00412 pyrophosphatase Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.
Probab=32.31 E-value=3e+02 Score=27.00 Aligned_cols=23 Identities=43% Similarity=0.998 Sum_probs=17.7
Q ss_pred cccCCCCC--CCCCCCCCCCCCCCCC
Q psy1075 348 YHNLRYPQ--GYFPRDNLKMKNDPLD 371 (624)
Q Consensus 348 ~h~~~yP~--gy~prD~l~~~~d~~d 371 (624)
+.++.||- ||||+- +..+.||||
T Consensus 33 ~~~~~yP~nYGfiP~T-~~~DgDPlD 57 (155)
T cd00412 33 YSSMGYPWNYGFIPQT-LEDDGDPLD 57 (155)
T ss_pred ccCCcCcccccccCCc-ccCCCCceE
Confidence 34789997 999983 566778877
No 83
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=31.96 E-value=74 Score=29.98 Aligned_cols=38 Identities=21% Similarity=0.421 Sum_probs=29.6
Q ss_pred EEEEecCCCCCC---------H---HHHHHHHHHHHhcCccEEEEeeecc
Q psy1075 445 VLLLVDPEEEYH---------R---EEIDKLRRDVEQDGLALIVLADWYN 482 (624)
Q Consensus 445 ~llivD~E~e~~---------~---~e~~~l~~~v~~~gl~~iv~~dWy~ 482 (624)
+|||||..+.|. + +-|.+|-+..++.|..||..-+.+.
T Consensus 2 aLlvID~Q~~f~~~~~~~~~~~~~i~~i~~l~~~~r~~~~~Vi~~~~~~~ 51 (174)
T PF00857_consen 2 ALLVIDMQNDFINGSLAPPNAEAIIPNINRLLDAARAAGVPVIHTRDIHD 51 (174)
T ss_dssp EEEEES-BHHHHTSTTTSTTHHHHHHHHHHHHHHHHHTTEEEEEEEESBS
T ss_pred EEEEEeChhhhhcCCccccCHHHHHHHHHHHHHHHHHhCCCeEEEEeeec
Confidence 689999998888 2 2356777777889999888888888
No 84
>PLN02621 nicotinamidase
Probab=30.90 E-value=1.3e+02 Score=29.67 Aligned_cols=39 Identities=8% Similarity=0.110 Sum_probs=31.5
Q ss_pred eEEEEecCCCCCCH------HHHHHHHHHHHhcCccEEEEeeecc
Q psy1075 444 GVLLLVDPEEEYHR------EEIDKLRRDVEQDGLALIVLADWYN 482 (624)
Q Consensus 444 g~llivD~E~e~~~------~e~~~l~~~v~~~gl~~iv~~dWy~ 482 (624)
=+||+||--..|.+ +.+.+|-+..++.|..||..-||+.
T Consensus 21 ~aLlvID~Q~~f~~~~~~~v~~i~~Ll~~ar~~~~pVi~t~~~~~ 65 (197)
T PLN02621 21 AALLVIDMQNYFSSMAEPILPALLTTIDLCRRASIPVFFTRHSHK 65 (197)
T ss_pred EEEEEEeChhhhhhhHHHHHHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 48999999998875 2356777777789999999999984
No 85
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=30.74 E-value=75 Score=31.61 Aligned_cols=40 Identities=25% Similarity=0.508 Sum_probs=31.6
Q ss_pred EEEEecCCCCCCH-------------HHHHHHHHHHHhcCccEEEEeeecchh
Q psy1075 445 VLLLVDPEEEYHR-------------EEIDKLRRDVEQDGLALIVLADWYNTD 484 (624)
Q Consensus 445 ~llivD~E~e~~~-------------~e~~~l~~~v~~~gl~~iv~~dWy~~~ 484 (624)
+|||||.-..|.+ +.|.+|-+..++.|.-||..-||+..+
T Consensus 4 ALlvID~Qndf~~~g~l~~~~~~~~v~~i~~l~~~ar~~g~pVi~~~~~~~~~ 56 (212)
T PRK11609 4 ALLLVDLQNDFCAGGALAVPEGDSTIDVANRLIDWCQSRGIPVIASQDWHPAN 56 (212)
T ss_pred EEEEEeCCccCCCCCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeccCCCC
Confidence 6899999998874 224677777788999999999998654
No 86
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=30.35 E-value=31 Score=37.16 Aligned_cols=120 Identities=22% Similarity=0.411 Sum_probs=64.5
Q ss_pred ceeeccccCCCCCCCCCCCCCCCC-------------------CCCCCCCCCCCCCcHHHHHHHHHhcceEEEEc-CCCc
Q psy1075 343 ILWDQYHNLRYPQGYFPRDNLKMK-------------------NDPLDWNGDHVHTNFKDLYQHLRNIGYYIEVL-GTPF 402 (624)
Q Consensus 343 ilwdq~h~~~yP~gy~prD~l~~~-------------------~d~~dw~gDh~htNf~~~~~~lr~~g~~vevl-~~~~ 402 (624)
||==.+|..|+||.|-+.-=.++| .+-+||.|+ -|++.+.+.-++.|+|| +| --|.
T Consensus 11 ~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~---~dl~~f~~~a~~~gl~v-ilrpGpy 86 (319)
T PF01301_consen 11 ILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGN---RDLDRFLDLAQENGLYV-ILRPGPY 86 (319)
T ss_dssp EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGG---G-HHHHHHHHHHTT-EE-EEEEES-
T ss_pred EEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccch---hhHHHHHHHHHHcCcEE-Eecccce
Confidence 344579999999988774444444 345999887 46667777777999997 44 2222
Q ss_pred ccccccccc--chhhhhhhhhcccceeecccCceeeeec----------------------CCCeeEEEEecCCCCCC--
Q psy1075 403 TCFDARHYG--VLLLDLYQHLRNIGYYIEVLGTPFTCFD----------------------ARHYGVLLLVDPEEEYH-- 456 (624)
Q Consensus 403 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~tc~~----------------------~~~yg~llivD~E~e~~-- 456 (624)
..+-..+| |.|.--.. .-.+.+.| .++=|.+|+|=-|.||.
T Consensus 87 -i~aE~~~gG~P~Wl~~~~------------~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~~ 153 (319)
T PF01301_consen 87 -ICAEWDNGGLPAWLLRKP------------DIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGSY 153 (319)
T ss_dssp ---TTBGGGG--GGGGGST------------TS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGCT
T ss_pred -ecccccchhhhhhhhccc------------cccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCCC
Confidence 11222221 12221000 00111111 24559999999999998
Q ss_pred ---HHHHHHHHHHHHhcCcc-EEEEee
Q psy1075 457 ---REEIDKLRRDVEQDGLA-LIVLAD 479 (624)
Q Consensus 457 ---~~e~~~l~~~v~~~gl~-~iv~~d 479 (624)
.+=.+.|++..++.|.. ++.++.
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~ 180 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTT 180 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEE
T ss_pred cccHhHHHHHHHHHHHhhCccceeecc
Confidence 44455888888899987 555544
No 87
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=30.05 E-value=2.4e+02 Score=24.40 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=36.3
Q ss_pred EEeccceeeeeceEEEEEEEEccCccCceeEEEEEEEEEEECCCCCCCCceeeeEEEEEEEEee
Q psy1075 270 SMTYSDILWPWSGYLAVHISVSAAAAAWQGTVQGHIEVTVESPPLEGEEGVRRSTVKLAVKANI 333 (624)
Q Consensus 270 ~~s~s~~~wP~~G~lav~~tv~~~~~~~~G~~~G~v~ltv~s~~~~~~~~~~~~~v~~p~~~~i 333 (624)
++++..-..+-.....+.++..+. ...|.+.+.+.+..+. +.+.+||++++
T Consensus 51 ~v~~~~g~l~PG~~~~~~V~~~~~--~~~g~~~~~l~i~~e~-----------~~~~i~v~a~~ 101 (102)
T PF14874_consen 51 SVEPPSGFLAPGESVELEVTFSPT--KPLGDYEGSLVITTEG-----------GSFEIPVKAEV 101 (102)
T ss_pred EEECCCCEECCCCEEEEEEEEEeC--CCCceEEEEEEEEECC-----------eEEEEEEEEEE
Confidence 444544455667778788887742 3367899999987775 35999999987
No 88
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=29.32 E-value=27 Score=43.80 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=20.1
Q ss_pred cCCcchhhHHHHHHHHHHHhcc
Q psy1075 4 LSGTSVASPVVAGVVALLASGL 25 (624)
Q Consensus 4 mSGTSMAaP~VAG~aALLls~~ 25 (624)
-.|||.|+|+.||++|++-|..
T Consensus 476 ~GGTS~AtPltAGiiAdi~q~~ 497 (1174)
T COG4934 476 AGGTSLATPLTAGIIADIEQYI 497 (1174)
T ss_pred ecccccccchHHHHHHHHHHHh
Confidence 4699999999999999999965
No 89
>PRK01250 inorganic pyrophosphatase; Provisional
Probab=28.81 E-value=76 Score=31.78 Aligned_cols=27 Identities=41% Similarity=0.956 Sum_probs=21.1
Q ss_pred ccceeeccccCCCCC--CCCCCCCCCCCCCCCC
Q psy1075 341 KRILWDQYHNLRYPQ--GYFPRDNLKMKNDPLD 371 (624)
Q Consensus 341 ~Rilwdq~h~~~yP~--gy~prD~l~~~~d~~d 371 (624)
.|+| +.++.||- ||||+- +..++||||
T Consensus 43 dR~l---~~~~~yP~nYGfIP~T-~~~DgDPLD 71 (176)
T PRK01250 43 DRFL---YTAMFYPCNYGFIPHT-LSLDGDPVD 71 (176)
T ss_pred eecc---CCCCcCCcCcccCCCc-ccCCCCceE
Confidence 3665 56789997 999985 677888887
No 90
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=28.72 E-value=60 Score=35.18 Aligned_cols=38 Identities=32% Similarity=0.638 Sum_probs=29.8
Q ss_pred eEEEEecCCCCCCHHHH-HHHHHHHHh-cCccEEEEeeec
Q psy1075 444 GVLLLVDPEEEYHREEI-DKLRRDVEQ-DGLALIVLADWY 481 (624)
Q Consensus 444 g~llivD~E~e~~~~e~-~~l~~~v~~-~gl~~iv~~dWy 481 (624)
|+-+++=||++|..+++ ++|++...+ ++-.|||+++=.
T Consensus 184 ga~~iliPE~~~~~~~~~~~i~~~~~~g~~~~vivvaEG~ 223 (317)
T cd00763 184 GAEFIVIPEAEFDREEVANRIKAGIERGKKHAIVVVAEGV 223 (317)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEeCCC
Confidence 67788889999998887 557666654 678899998863
No 91
>PF01614 IclR: Bacterial transcriptional regulator This Pfam family contains some of the members of the iclR family; InterPro: IPR014757 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; PDB: 3MQ0_A 2IA2_D 3OBF_B 2G7U_C 3R4K_A 1TF1_D 1MKM_A 1YSP_A 3BJN_A 1TD5_A ....
Probab=28.38 E-value=1.6e+02 Score=26.49 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCcHHHHHHHHH---hcceEEEEcCCCccccccccccchhhhhhhhhcccceeecccCceeeeecCCCeeE
Q psy1075 369 PLDWNGDHVHTNFKDLYQHLR---NIGYYIEVLGTPFTCFDARHYGVLLLDLYQHLRNIGYYIEVLGTPFTCFDARHYGV 445 (624)
Q Consensus 369 ~~dw~gDh~htNf~~~~~~lr---~~g~~vevl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tc~~~~~yg~ 445 (624)
+++...++.-++...|.+.|+ +.||.+..- ...|++ ..-+.|+...+-.-.++
T Consensus 41 ~~~~~~~~~~~~~~~l~~~l~~ir~~Gya~~~~-------------~~~~gv-----------~~iA~Pi~~~~g~~~~a 96 (129)
T PF01614_consen 41 PLEPYTERTITDPEELRQELAEIRERGYAVSDG-------------EYEPGV-----------AAIAVPIFDPNGQVVAA 96 (129)
T ss_dssp TSSBSSTTSCCSHHHHHHHHHHHHHHTSEEEES-------------SSSTTE-----------EEEEEEEEETTSCEEEE
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHhcccccch-------------hccccc-----------ceEEEEEECCCCCEEEE
Confidence 566777777788888877776 889999876 011221 12245666666777899
Q ss_pred EEEecCCCCCCHHHHHH-HHHHHH
Q psy1075 446 LLLVDPEEEYHREEIDK-LRRDVE 468 (624)
Q Consensus 446 llivD~E~e~~~~e~~~-l~~~v~ 468 (624)
|=|+=|.+.|-+++..+ +...++
T Consensus 97 lsv~~~~~~~~~~~~~~~~~~~l~ 120 (129)
T PF01614_consen 97 LSVSGPSERFDEERLEERLAPALR 120 (129)
T ss_dssp EEEEEEGGGSHHHHHHHHHHHHHH
T ss_pred EEEeeEhHhCCHHHHHHHHHHHHH
Confidence 99999999999888777 655554
No 92
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=28.37 E-value=64 Score=32.88 Aligned_cols=41 Identities=12% Similarity=0.323 Sum_probs=35.8
Q ss_pred ecCCCCCCHHHHHHHHHHHHhcCccEEEEeeecchhhhhhc
Q psy1075 449 VDPEEEYHREEIDKLRRDVEQDGLALIVLADWYNTDVMRKI 489 (624)
Q Consensus 449 vD~E~e~~~~e~~~l~~~v~~~gl~~iv~~dWy~~~~~~~~ 489 (624)
+.+|.|..++++++|.+.+++++..+|+.-..++..+++.|
T Consensus 177 ~~~~~~ps~~~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~l 217 (256)
T PF01297_consen 177 ISPGEEPSPKDLAELIKLIKENKVKCIFTEPQFSSKLAEAL 217 (256)
T ss_dssp SSSSSSS-HHHHHHHHHHHHHTT-SEEEEETTS-THHHHHH
T ss_pred cccccCCCHHHHHHHHHHhhhcCCcEEEecCCCChHHHHHH
Confidence 58999999999999999999999999999999999988877
No 93
>PRK04302 triosephosphate isomerase; Provisional
Probab=27.13 E-value=89 Score=31.59 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=34.1
Q ss_pred eecCCCee--EEEEecCCCCCCHHHHHHHHHHHHhcCccEEEEee
Q psy1075 437 CFDARHYG--VLLLVDPEEEYHREEIDKLRRDVEQDGLALIVLAD 479 (624)
Q Consensus 437 c~~~~~yg--~llivD~E~e~~~~e~~~l~~~v~~~gl~~iv~~d 479 (624)
|-.+++.| .+||.|+|..+..+|++++.+..++.||.+|+...
T Consensus 78 ~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~ 122 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVN 122 (223)
T ss_pred HHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcC
Confidence 33344444 48999999999999999888888899999997654
No 94
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=26.29 E-value=69 Score=34.48 Aligned_cols=37 Identities=24% Similarity=0.524 Sum_probs=29.0
Q ss_pred eEEEEecCCCCCCHHHH-HHHHHHHHh-cCccEEEEeee
Q psy1075 444 GVLLLVDPEEEYHREEI-DKLRRDVEQ-DGLALIVLADW 480 (624)
Q Consensus 444 g~llivD~E~e~~~~e~-~~l~~~v~~-~gl~~iv~~dW 480 (624)
|+=+++=||++|..+++ +++++-.++ .+-.+||+++-
T Consensus 184 gad~iliPE~~~~~~~l~~~i~~r~~~g~~~~iIvvaEG 222 (301)
T TIGR02482 184 GAEIIIIPEFDYDIDELIQRLKEQHEAGKKHSIIIVAEG 222 (301)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 67788889999998887 445555544 67889999999
No 95
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=26.06 E-value=34 Score=42.90 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=21.9
Q ss_pred eccCcccccchhHHHHHHHHHhcCC
Q psy1075 141 RTLSGTSVASPVVAGVVALLASGLK 165 (624)
Q Consensus 141 ~~lSGTSmAAP~VAGaaALLlS~~P 165 (624)
...-|||.|+|+.||+.|++-|..-
T Consensus 474 ~~~GGTS~AtPltAGiiAdi~q~~~ 498 (1174)
T COG4934 474 YVAGGTSLATPLTAGIIADIEQYIG 498 (1174)
T ss_pred EEecccccccchHHHHHHHHHHHhc
Confidence 4456999999999999999999765
No 96
>PF12237 PCIF1_WW: Phosphorylated CTD interacting factor 1 WW domain; InterPro: IPR022035 This domain is found in bacteria and eukaryotes, and is approximately 180 amino acids in length. It is the WW domain of PCIF1. PCIF1 interacts with phosphorylated RNA polymerase II carboxy-terminal domain (CTD). The WW domain of PCIF1 can directly and preferentially bind to the phosphorylated CTD compared to the unphosphorylated CTD. PCIF1 binds to the hyperphosphorylated RNAP II (RNAP IIO) in vitro and in vivo. Double immunofluorescence labeling in HeLa cells demonstrated that PCIF1 and endogenous RNAP IIO are co-localized in the cell nucleus. Thus, PCIF1 may play a role in mRNA synthesis by modulating RNAP IIO activity.
Probab=25.38 E-value=1.3e+02 Score=30.17 Aligned_cols=95 Identities=18% Similarity=0.472 Sum_probs=62.2
Q ss_pred HHHHHHH-hcceEEEEcCCCccccccccccchhhhhhhhhcccceeecccCceeeeecCCCeeEEEEecCCCCCCHHHHH
Q psy1075 383 DLYQHLR-NIGYYIEVLGTPFTCFDARHYGVLLLDLYQHLRNIGYYIEVLGTPFTCFDARHYGVLLLVDPEEEYHREEID 461 (624)
Q Consensus 383 ~~~~~lr-~~g~~vevl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tc~~~~~yg~llivD~E~e~~~~e~~ 461 (624)
..|+.|+ ..|--.|.+.+||-|+ -.+|.-+.||.-..- ||-=..||-.-.+--.=++| +|-+|-|.
T Consensus 51 ~vf~~L~~~f~v~~EcFASPlN~~-~~~ycSaFpDtD~~F----------GS~GsFf~f~p~~Gsfe~NP--PF~~elm~ 117 (176)
T PF12237_consen 51 EVFDALHKRFGVSFECFASPLNCY-FRQYCSAFPDTDAYF----------GSLGSFFDFEPVSGSFEANP--PFDEELME 117 (176)
T ss_pred HHHHHHHHHcCCCEEEecChhhhh-HHHhcCcCcCccccc----------cCCcchhcccCCCCceeeCC--CCCHHHHH
Confidence 5788888 7888899999998776 477888888866654 44334555555555666777 55555554
Q ss_pred H----HHHHH----HhcCcc-EEEEeeecchhhhhhce
Q psy1075 462 K----LRRDV----EQDGLA-LIVLADWYNTDVMRKIK 490 (624)
Q Consensus 462 ~----l~~~v----~~~gl~-~iv~~dWy~~~~~~~~~ 490 (624)
+ +++.+ ...-|+ |||+-+|-+...+++++
T Consensus 118 ~~~~h~~~~L~~~~~~~~LsFvvvvP~w~~~~~~~~l~ 155 (176)
T PF12237_consen 118 RMVNHIERLLRAENSSEPLSFVVVVPEWRDPPAWERLE 155 (176)
T ss_pred HHHHHHHHHHHhccccCceEEEEEecCCCCcHHHHHHh
Confidence 4 44444 223455 45666798877755554
No 97
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=25.13 E-value=89 Score=33.95 Aligned_cols=38 Identities=21% Similarity=0.443 Sum_probs=29.1
Q ss_pred eEEEEecCCCCCCHHHH-HHHHHHHHh-cCccEEEEeeec
Q psy1075 444 GVLLLVDPEEEYHREEI-DKLRRDVEQ-DGLALIVLADWY 481 (624)
Q Consensus 444 g~llivD~E~e~~~~e~-~~l~~~v~~-~gl~~iv~~dWy 481 (624)
|+=+++=||++|-.+++ ++|++-.++ .+-.|||+++=.
T Consensus 186 ~a~~iliPE~~~~~~~l~~~v~~~~~~g~~~~vvvvsEG~ 225 (324)
T TIGR02483 186 GADVILIPEIPFDIDSVCEKVRERFARGKRFAIVVVAEGA 225 (324)
T ss_pred CCCEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEEecCc
Confidence 77788889999998877 556555545 677899998765
No 98
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=25.03 E-value=92 Score=33.01 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHhhcccCC
Q psy1075 31 GHINPASMKQGLMASARRLP 50 (624)
Q Consensus 31 p~ltpaqIk~~L~~tA~~l~ 50 (624)
|.++++|||++|+++|+++.
T Consensus 267 p~~~~~~v~~~l~~ta~~~~ 286 (298)
T cd07494 267 PGLSPERARSLLNKTARDVT 286 (298)
T ss_pred CCCCHHHHHHHHHHhCcccC
Confidence 99999999999999999884
No 99
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=24.71 E-value=1e+02 Score=30.75 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=28.5
Q ss_pred ecCCCeeEEEEecCC-CCCCHHHHHHHHHHHHhcCccEEEE
Q psy1075 438 FDARHYGVLLLVDPE-EEYHREEIDKLRRDVEQDGLALIVL 477 (624)
Q Consensus 438 ~~~~~yg~llivD~E-~e~~~~e~~~l~~~v~~~gl~~iv~ 477 (624)
-++++|=+|++..-- +++.++.++.|++.| ++|-++|++
T Consensus 48 ~~L~~~Dvvv~~~~~~~~l~~~~~~al~~~v-~~Ggglv~l 87 (217)
T PF06283_consen 48 ENLKGYDVVVFYNTGGDELTDEQRAALRDYV-ENGGGLVGL 87 (217)
T ss_dssp HCHCT-SEEEEE-SSCCGS-HHHHHHHHHHH-HTT-EEEEE
T ss_pred hHhcCCCEEEEECCCCCcCCHHHHHHHHHHH-HcCCCEEEE
Confidence 346778888777665 469999999999999 699999986
No 100
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=24.66 E-value=64 Score=31.85 Aligned_cols=32 Identities=22% Similarity=0.442 Sum_probs=27.2
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhcCccEEEEe
Q psy1075 446 LLLVDPEEEYHREEIDKLRRDVEQDGLALIVLA 478 (624)
Q Consensus 446 llivD~E~e~~~~e~~~l~~~v~~~gl~~iv~~ 478 (624)
.++|| |--||+++|..|-+.+.+.|..|+|++
T Consensus 79 vI~ID-EaQFf~~~i~~l~~~~~~~g~~Vi~~G 110 (176)
T PF00265_consen 79 VIGID-EAQFFDEQIVQLVEILANKGIPVICAG 110 (176)
T ss_dssp EEEES-SGGGSTTTHHHHHHHHHHTT-EEEEEE
T ss_pred EEEEe-chHhhHHHHHHHHHHHHhCCCeEEEEe
Confidence 56677 778888999999999999999999996
No 101
>PRK14071 6-phosphofructokinase; Provisional
Probab=24.29 E-value=76 Score=34.95 Aligned_cols=38 Identities=26% Similarity=0.493 Sum_probs=30.4
Q ss_pred eEEEEecCCCCCCHHHH-HHHHHHHHh-cCccEEEEeeec
Q psy1075 444 GVLLLVDPEEEYHREEI-DKLRRDVEQ-DGLALIVLADWY 481 (624)
Q Consensus 444 g~llivD~E~e~~~~e~-~~l~~~v~~-~gl~~iv~~dWy 481 (624)
|+-+|+=||.+|..+++ +++++...+ ++-.+||+++=.
T Consensus 200 ga~~iliPE~~~~~~~l~~~i~~~~~~~~~~~iivvsEG~ 239 (360)
T PRK14071 200 GADVILIPEIPYTLENVCKKIRERQEEGKNFCLVVVSEAV 239 (360)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEEEcCCC
Confidence 78889999999999987 556666554 678899998865
No 102
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=24.08 E-value=1.3e+02 Score=32.33 Aligned_cols=42 Identities=12% Similarity=0.300 Sum_probs=39.3
Q ss_pred ecCCCCCCHHHHHHHHHHHHhcCccEEEEeeecchhhhhhce
Q psy1075 449 VDPEEEYHREEIDKLRRDVEQDGLALIVLADWYNTDVMRKIK 490 (624)
Q Consensus 449 vD~E~e~~~~e~~~l~~~v~~~gl~~iv~~dWy~~~~~~~~~ 490 (624)
+.+|.|-.+.+|++|.+.+++++..+|++-..+|...++.|.
T Consensus 230 ~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~la 271 (311)
T PRK09545 230 VNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVIESVA 271 (311)
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCChHHHHHHH
Confidence 579999999999999999999999999999999999988775
No 103
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=24.02 E-value=42 Score=25.60 Aligned_cols=29 Identities=17% Similarity=0.373 Sum_probs=23.1
Q ss_pred cEEEEeee---cchhhhhhceeccccccccee
Q psy1075 473 ALIVLADW---YNTDVMRKIKFYDENTRQWWL 501 (624)
Q Consensus 473 ~~iv~~dW---y~~~~~~~~~f~d~nt~~~w~ 501 (624)
.++||+-+ -+......+.+||.+|.+|=.
T Consensus 13 kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~ 44 (49)
T PF07646_consen 13 KIYVFGGYGTDNGGSSSNDVWVFDTETNQWTE 44 (49)
T ss_pred EEEEECCcccCCCCcccceeEEEECCCCEEee
Confidence 57888888 566666788999999999853
No 104
>PF13964 Kelch_6: Kelch motif
Probab=23.90 E-value=43 Score=25.46 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=24.7
Q ss_pred cEEEEeeecc-hhhhhhceecccccccce
Q psy1075 473 ALIVLADWYN-TDVMRKIKFYDENTRQWW 500 (624)
Q Consensus 473 ~~iv~~dWy~-~~~~~~~~f~d~nt~~~w 500 (624)
.+.||+-+.+ ....+.+..||..|++|=
T Consensus 13 ~iyv~GG~~~~~~~~~~v~~yd~~t~~W~ 41 (50)
T PF13964_consen 13 KIYVFGGYDNSGKYSNDVERYDPETNTWE 41 (50)
T ss_pred EEEEECCCCCCCCccccEEEEcCCCCcEE
Confidence 7889999999 788899999999999874
No 105
>TIGR00166 S6 ribosomal protein S6. MRP17 protein is a component of the small ribosomal subunit in mitochondria, and is shown here to be an ortholog of S6.
Probab=23.57 E-value=1.3e+02 Score=26.35 Aligned_cols=51 Identities=24% Similarity=0.504 Sum_probs=39.0
Q ss_pred CCeeEEEEecCCCCC-CHHHHHHHHHHHHhcCccEEEEeeecchhhhhhcee
Q psy1075 441 RHYGVLLLVDPEEEY-HREEIDKLRRDVEQDGLALIVLADWYNTDVMRKIKF 491 (624)
Q Consensus 441 ~~yg~llivD~E~e~-~~~e~~~l~~~v~~~gl~~iv~~dWy~~~~~~~~~f 491 (624)
++|=+++|+||+..= ..+.++++++-+.++|=.++-+-+|=..+++-.|+=
T Consensus 1 ~~YE~~~Il~p~~~~~~~~~~~~~~~~i~~~gg~i~~~~~~G~r~LaY~I~k 52 (93)
T TIGR00166 1 RHYEIIFLVRPTLSEEVKGQIERYKKVITLNGAEIVRSEDWGKRRLAYPIKK 52 (93)
T ss_pred CceeEEEEECCCCcHHHHHHHHHHHHHHHhCCCEEEEEEeecceecceEcCC
Confidence 358899999996421 345566677778899999999999988888877773
No 106
>PRK00647 hypothetical protein; Validated
Probab=23.39 E-value=1e+02 Score=28.06 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=30.5
Q ss_pred ceEEEEEEEEccCcc--CceeEEEEEEEEEEECCCCCCC
Q psy1075 281 SGYLAVHISVSAAAA--AWQGTVQGHIEVTVESPPLEGE 317 (624)
Q Consensus 281 ~G~lav~~tv~~~~~--~~~G~~~G~v~ltv~s~~~~~~ 317 (624)
.|.+.|.|.|+|++. ...|+.+|.+.+.|..||.+|.
T Consensus 3 ~~~~~l~V~V~P~Ak~~~I~g~~~~~Lkvrv~ApPvdGK 41 (96)
T PRK00647 3 EGFWILEVKVTPKARENKIVGFEGGILKVRVTEVPEKGK 41 (96)
T ss_pred CCcEEEEEEEeeCCCcceeccccCCEEEEEEecCCCCCh
Confidence 366789999999887 4467888999999999998873
No 107
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=23.18 E-value=1.6e+02 Score=27.39 Aligned_cols=40 Identities=28% Similarity=0.547 Sum_probs=29.1
Q ss_pred EEEEecCCCCCCHHH-------------HHHHHHHHHhcCccEEEEeeecchh
Q psy1075 445 VLLLVDPEEEYHREE-------------IDKLRRDVEQDGLALIVLADWYNTD 484 (624)
Q Consensus 445 ~llivD~E~e~~~~e-------------~~~l~~~v~~~gl~~iv~~dWy~~~ 484 (624)
+|||||.-++|.... +.+|-+..+++|..||..-+++..+
T Consensus 1 aLliID~Q~~f~~~~~~~~~~~~~~~~~i~~l~~~ar~~~~~vi~~~~~~~~~ 53 (161)
T cd00431 1 ALLVVDMQNDFVPGGGLLLPGADELVPNINRLLAAARAAGIPVIFTRDWHPPD 53 (161)
T ss_pred CEEEEECcccCcCCCCCcCccHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCC
Confidence 489999999886532 5666777778898777776666544
No 108
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=22.26 E-value=72 Score=23.92 Aligned_cols=15 Identities=40% Similarity=0.817 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHHh
Q psy1075 9 VASPVVAGVVALLAS 23 (624)
Q Consensus 9 MAaP~VAG~aALLls 23 (624)
.|||.+||++|-+.-
T Consensus 14 LAAP~iagIi~s~iv 28 (35)
T PF13940_consen 14 LAAPIIAGIIASLIV 28 (35)
T ss_pred hHhHHHHHHHHHHHH
Confidence 589999999886543
No 109
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=21.93 E-value=6.7e+02 Score=29.24 Aligned_cols=124 Identities=17% Similarity=0.197 Sum_probs=77.5
Q ss_pred Cceeeeec-CCCeeEEEEecCCC-------CCCHHHHHHHHHHHHhcC-ccEEEEeeecchhhhhhceecccccccceec
Q psy1075 432 GTPFTCFD-ARHYGVLLLVDPEE-------EYHREEIDKLRRDVEQDG-LALIVLADWYNTDVMRKIKFYDENTRQWWLP 502 (624)
Q Consensus 432 ~~~~tc~~-~~~yg~llivD~E~-------e~~~~e~~~l~~~v~~~g-l~~iv~~dWy~~~~~~~~~f~d~nt~~~w~p 502 (624)
|..+.+|| ..+. .+|++|.-. .+-+++++-|++++.+.. =.+|||.- ++.-.+ ....-| ...|
T Consensus 290 G~~YYSFd~~ggv-rfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~a~~k~VVVf~H-HPp~s~-g~~~~D-----p~~p 361 (496)
T TIGR03767 290 GTGYYTFDIAGGV-RGISMDTTNRAGGDEGSLGQTQFKWIKDTLRASSDTLFVLFSH-HTSWSM-VNELTD-----PVDP 361 (496)
T ss_pred CCceEEEEeECCE-EEEEEeCCCcCCCcCCccCHHHHHHHHHHHhcCCCCCEEEEEC-CCCccc-cccccc-----cccc
Confidence 56667777 4443 777777743 467899999999997553 23666542 211000 000000 0012
Q ss_pred cCCCCCcchhhhhhhhh-cccccCeEEeeeEEeCCe-------------eEEeecCCceeecCCCCeEEEEEcccccc
Q psy1075 503 ETGGSNIPALNELLAVH-GIRLGDRVYEGSITMNDR-------------TLQYMSGTSIVQFPTSGVLVGAKLNNQGK 566 (624)
Q Consensus 503 ~tgg~nvPalN~lL~~~-~i~~g~~v~~g~~~~~~~-------------~~~~~sg~~i~~fp~~~~~~~~~l~~~~~ 566 (624)
...-.|...|=+||+.| +|.. ++.|+...+.. .++=.+=+|++.||.-.-++....+.+|.
T Consensus 362 g~~~~n~~eLldLL~~ypnV~a---VfsGHvH~n~i~~~~~~~~~~p~~gfweI~TaSlvdfPq~~Ri~Ei~~n~dgt 436 (496)
T TIGR03767 362 GEKRHLGTELVSLLLEHPNVLA---WVNGHTHSNKITAHRRVEGVGKDKGFWEINTASHIDFPQQGRIIELADNQDGT 436 (496)
T ss_pred cccccCHHHHHHHHhcCCCceE---EEECCcCCCccccccCCCCCCCcCCeEEEeccccccCCCCceEEEEEeCCCCc
Confidence 12234567888999998 6774 89999887662 22333456899999999999988888775
No 110
>smart00002 PLP Myelin proteolipid protein (PLP or lipophilin).
Probab=21.87 E-value=39 Score=28.32 Aligned_cols=11 Identities=64% Similarity=1.355 Sum_probs=10.1
Q ss_pred eeecCCCeeEE
Q psy1075 436 TCFDARHYGVL 446 (624)
Q Consensus 436 tc~~~~~yg~l 446 (624)
-|.|+++||.|
T Consensus 22 lC~D~RQyGil 32 (60)
T smart00002 22 LCVDARQYGIL 32 (60)
T ss_pred EEeechhccee
Confidence 49999999988
No 111
>PRK00453 rpsF 30S ribosomal protein S6; Reviewed
Probab=21.64 E-value=1.2e+02 Score=27.35 Aligned_cols=77 Identities=17% Similarity=0.324 Sum_probs=46.3
Q ss_pred CCeeEEEEecCC--CCCCHHHHHHHHHHHHhcCccEEEEeeecchhhhhhceecccccccceeccCCCCCcchhhhhhhh
Q psy1075 441 RHYGVLLLVDPE--EEYHREEIDKLRRDVEQDGLALIVLADWYNTDVMRKIKFYDENTRQWWLPETGGSNIPALNELLAV 518 (624)
Q Consensus 441 ~~yg~llivD~E--~e~~~~e~~~l~~~v~~~gl~~iv~~dWy~~~~~~~~~f~d~nt~~~w~p~tgg~nvPalN~lL~~ 518 (624)
.+|=+++|++|+ +|=..+.++++++-+.++|-.++-+-+|=-..+.-.|+=+.+-. -+.+-.. ++-.++++|-+.
T Consensus 2 ~~YE~~~il~~~~~~~~~~~~~~~~~~~i~~~gg~i~~~~~~G~r~LAY~I~k~~~G~-Y~~~~f~--~~~~~i~el~~~ 78 (108)
T PRK00453 2 RKYEIVFILRPDLSEEQVKALVERFKGVITENGGTIHKVEDWGRRRLAYPINKLRKGH-YVLLNFE--APPAAIAELERL 78 (108)
T ss_pred CceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEecccccccceEcCCCcEEE-EEEEEEE--eCHHHHHHHHHH
Confidence 468899999998 33333444455556667798888999998777777666433211 1111111 244566666554
Q ss_pred hc
Q psy1075 519 HG 520 (624)
Q Consensus 519 ~~ 520 (624)
+.
T Consensus 79 l~ 80 (108)
T PRK00453 79 FR 80 (108)
T ss_pred hC
Confidence 43
No 112
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=21.54 E-value=1.5e+02 Score=29.07 Aligned_cols=38 Identities=13% Similarity=0.313 Sum_probs=30.9
Q ss_pred EEecCCCCCCHHHHHHHHHHHHhcCccEEEEeeecchh
Q psy1075 447 LLVDPEEEYHREEIDKLRRDVEQDGLALIVLADWYNTD 484 (624)
Q Consensus 447 livD~E~e~~~~e~~~l~~~v~~~gl~~iv~~dWy~~~ 484 (624)
++-|.+.+||.+-++-+++..++.|+.|+++..-|+.+
T Consensus 5 v~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~ 42 (266)
T cd06282 5 VLPSLANPVFAECVQGIQEEARAAGYSLLLATTDYDAE 42 (266)
T ss_pred EeCCCCcchHHHHHHHHHHHHHHCCCEEEEeeCCCCHH
Confidence 33477889999999999999999999999887666653
No 113
>KOG4175|consensus
Probab=21.54 E-value=1e+02 Score=32.04 Aligned_cols=29 Identities=31% Similarity=0.628 Sum_probs=25.5
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHhcCccEEEEe
Q psy1075 446 LLLVDPEEEYHREEIDKLRRDVEQDGLALIVLA 478 (624)
Q Consensus 446 llivD~E~e~~~~e~~~l~~~v~~~gl~~iv~~ 478 (624)
+||||. -|||-.+||+..+++|+++|-..
T Consensus 127 fiivDl----PpEEa~~~Rne~~k~gislvpLv 155 (268)
T KOG4175|consen 127 FIIVDL----PPEEAETLRNEARKHGISLVPLV 155 (268)
T ss_pred eEeccC----ChHHHHHHHHHHHhcCceEEEee
Confidence 789984 58999999999999999998654
No 114
>PLN02960 alpha-amylase
Probab=21.53 E-value=2.7e+02 Score=34.53 Aligned_cols=67 Identities=24% Similarity=0.508 Sum_probs=41.9
Q ss_pred CcHHHH----HHHHHhcce-EEEEcCCCccccccccccchhhhhhhhhcccceeecccCceeeeecC--CCeeEEEEecC
Q psy1075 379 TNFKDL----YQHLRNIGY-YIEVLGTPFTCFDARHYGVLLLDLYQHLRNIGYYIEVLGTPFTCFDA--RHYGVLLLVDP 451 (624)
Q Consensus 379 tNf~~~----~~~lr~~g~-~vevl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tc~~~--~~yg~llivD~ 451 (624)
.+|+.+ -.||+++|| .||.+ |+..|. + ..+. |-.-++|-+ +.||+
T Consensus 413 gtf~~~~e~~LdYLk~LGvt~IeLm--Pv~e~~---------~----~~sw-------GY~~~~yfa~~~~yGt------ 464 (897)
T PLN02960 413 SSFKEFTQKVLPHVKKAGYNAIQLI--GVQEHK---------D----YSSV-------GYKVTNFFAVSSRFGT------ 464 (897)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEC--CcccCC---------C----CCCC-------CCCcccCCCcccccCC------
Confidence 467665 578999999 57776 653220 0 0001 212222222 56887
Q ss_pred CCCCCHHHHHHHHHHHHhcCccEEEEeee
Q psy1075 452 EEEYHREEIDKLRRDVEQDGLALIVLADW 480 (624)
Q Consensus 452 E~e~~~~e~~~l~~~v~~~gl~~iv~~dW 480 (624)
++|.+.|-++..++|+.||+ ||
T Consensus 465 -----p~dfk~LVd~aH~~GI~VIL--Dv 486 (897)
T PLN02960 465 -----PDDFKRLVDEAHGLGLLVFL--DI 486 (897)
T ss_pred -----HHHHHHHHHHHHHCCCEEEE--Ee
Confidence 58999999999899998875 55
No 115
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=21.23 E-value=3.2e+02 Score=25.51 Aligned_cols=85 Identities=18% Similarity=0.146 Sum_probs=54.7
Q ss_pred CCCCccC-----ccCCcCeEeeeeeccCccc-ceeeeeCCceeecC----CCCCceeEEEEeccceeeeeceEEEEEEEE
Q psy1075 221 PYCTQPL-----YHGAIPIIVNVTILNGMGV-VGKILERPKWYPYL----PHNGEFLEISMTYSDILWPWSGYLAVHISV 290 (624)
Q Consensus 221 P~~~qpL-----~~~a~pv~~nlt~~ng~~~-~G~i~~~p~w~~~~----~~~G~~l~v~~s~s~~~wP~~G~lav~~tv 290 (624)
|-..|.| +.+..++++++++.++..- .|.|.=.+.=.... ..-++++.+. ..++.|....-.|.++|
T Consensus 25 P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~---~~Vtl~~~~sk~V~~~i 101 (121)
T PF06030_consen 25 PGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIP---KEVTLPPNESKTVTFTI 101 (121)
T ss_pred CCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCC---cEEEECCCCEEEEEEEE
Confidence 4445555 7889999999998875432 35444211110000 0112223332 23899999999999999
Q ss_pred ccCccCceeEEEEEEEEE
Q psy1075 291 SAAAAAWQGTVQGHIEVT 308 (624)
Q Consensus 291 ~~~~~~~~G~~~G~v~lt 308 (624)
+-....|.|++-|-|.+.
T Consensus 102 ~~P~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 102 KMPKKAFDGIILGGIYFS 119 (121)
T ss_pred EcCCCCcCCEEEeeEEEE
Confidence 998889999999988874
No 116
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=21.18 E-value=1.2e+02 Score=30.71 Aligned_cols=41 Identities=22% Similarity=0.428 Sum_probs=33.3
Q ss_pred eEEEEecCCCCCCHH-------------------HHHHHHHHHHhcCccEEEEeeecchh
Q psy1075 444 GVLLLVDPEEEYHRE-------------------EIDKLRRDVEQDGLALIVLADWYNTD 484 (624)
Q Consensus 444 g~llivD~E~e~~~~-------------------e~~~l~~~v~~~gl~~iv~~dWy~~~ 484 (624)
-+|||||.-++|..+ -|.+|-+..++.|.-||.+-|+|..+
T Consensus 16 tALlvID~Qn~f~~~~~~~~~~~~~~~~~~~~i~~i~~l~~~aR~~g~pVI~~~~~~~~~ 75 (226)
T TIGR03614 16 TALIVVDMQNAYATPGGYLDLAGFDVSGTKPVIENIKKAVTAARAAGIQVIYFQNGWDND 75 (226)
T ss_pred EEEEEEechhhhhCCCcccccccCcchhHHHHHHHHHHHHHHHHHcCCEEEEEecccChh
Confidence 489999999988642 26788888889999999988888665
No 117
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=20.81 E-value=1e+02 Score=30.70 Aligned_cols=38 Identities=3% Similarity=0.085 Sum_probs=31.9
Q ss_pred EEecCCCCCCHHHHHHHHHHHHhcCccEEEEe-eecchh
Q psy1075 447 LLVDPEEEYHREEIDKLRRDVEQDGLALIVLA-DWYNTD 484 (624)
Q Consensus 447 livD~E~e~~~~e~~~l~~~v~~~gl~~iv~~-dWy~~~ 484 (624)
+|+|.+.+||.+-+.-+++..++.|..|+++. ..++.+
T Consensus 4 ~v~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~ 42 (271)
T cd06314 4 VVTNGASPFWKIAEAGVKAAGKELGVDVEFVVPQQGTVN 42 (271)
T ss_pred EEcCCCcHHHHHHHHHHHHHHHHcCCeEEEeCCCCCCHH
Confidence 45688999999999999999999999999985 444543
No 118
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=20.11 E-value=47 Score=27.36 Aligned_cols=21 Identities=29% Similarity=0.767 Sum_probs=14.8
Q ss_pred cchhhhhhc-----eeccccccccee
Q psy1075 481 YNTDVMRKI-----KFYDENTRQWWL 501 (624)
Q Consensus 481 y~~~~~~~~-----~f~d~nt~~~w~ 501 (624)
||.+++.-+ |-||.+||.|=.
T Consensus 7 y~~~lI~vFK~~pSr~YD~~Tr~W~F 32 (55)
T PF07443_consen 7 YHEELIAVFKQMPSRNYDPKTRKWNF 32 (55)
T ss_pred CCHHHHHHHHcCcccccCccceeeee
Confidence 666665533 589999999943
No 119
>PRK03202 6-phosphofructokinase; Provisional
Probab=20.09 E-value=1.2e+02 Score=33.04 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=29.6
Q ss_pred eEEEEecCCCCCCHHHHHH-HHHHHHh-cCccEEEEeeecc
Q psy1075 444 GVLLLVDPEEEYHREEIDK-LRRDVEQ-DGLALIVLADWYN 482 (624)
Q Consensus 444 g~llivD~E~e~~~~e~~~-l~~~v~~-~gl~~iv~~dWy~ 482 (624)
|+-+++=||++|..+++.+ +++-.+. .+-.|||+++-..
T Consensus 185 ~a~~iliPE~~~~~~~l~~~i~~r~~~g~~~~vivvsEg~~ 225 (320)
T PRK03202 185 GAEVILIPEVPFDIEELCAKIKKGRERGKKHAIIVVAEGVM 225 (320)
T ss_pred CCCEEEeCCCCCCHHHHHHHHHHHHHhcCCcEEEEEeCCCC
Confidence 6777888999999887744 5544444 6788999999865
No 120
>PF01250 Ribosomal_S6: Ribosomal protein S6; InterPro: IPR000529 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S6 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S6 is known to bind together with S18 to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups bacterial, red algal chloroplast and cyanelle S6 ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 3BBN_F 3R3T_B 3F1E_F 2QNH_g 2OW8_g 3PYQ_F 3PYS_F 3PYU_F 3MR8_F 3PYN_F ....
Probab=20.07 E-value=95 Score=26.93 Aligned_cols=50 Identities=20% Similarity=0.489 Sum_probs=38.6
Q ss_pred CeeEEEEecCC--CCCCHHHHHHHHHHHHhcCccEEEEeeecchhhhhhcee
Q psy1075 442 HYGVLLLVDPE--EEYHREEIDKLRRDVEQDGLALIVLADWYNTDVMRKIKF 491 (624)
Q Consensus 442 ~yg~llivD~E--~e~~~~e~~~l~~~v~~~gl~~iv~~dWy~~~~~~~~~f 491 (624)
.|=+++|++|+ ++=..+.++.+.+.|.++|-.++-+-+|=...+.-.|+=
T Consensus 2 ~YE~~~il~~~~~~~~~~~~~~~~~~~i~~~gg~v~~~~~~G~r~LaY~i~k 53 (92)
T PF01250_consen 2 KYELMFILRPDLSEEEIKKLIERVKKIIEKNGGVVRSVENWGKRRLAYPIKK 53 (92)
T ss_dssp EEEEEEEE-TTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEEESSEETT
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEeecccccCCCC
Confidence 58899999987 334555666778888899999999999988887776663
No 121
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=20.07 E-value=3.2e+02 Score=27.97 Aligned_cols=57 Identities=12% Similarity=0.157 Sum_probs=39.1
Q ss_pred CCcHHHHHHHHHhcce-EEEEcCCCccccccccccchhhhhhhhhcccceeecccCceeeeecCCCeeEEEEecCCCCCC
Q psy1075 378 HTNFKDLYQHLRNIGY-YIEVLGTPFTCFDARHYGVLLLDLYQHLRNIGYYIEVLGTPFTCFDARHYGVLLLVDPEEEYH 456 (624)
Q Consensus 378 htNf~~~~~~lr~~g~-~vevl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tc~~~~~yg~llivD~E~e~~ 456 (624)
...+.+.+..+++.|| +||+. .....|+.. ...+.
T Consensus 20 ~~~~~e~~~~~~~~G~~~iEl~---------------------------------~~~~~~~~~-----------~~~~~ 55 (283)
T PRK13209 20 GECWLEKLAIAKTAGFDFVEMS---------------------------------VDESDERLA-----------RLDWS 55 (283)
T ss_pred CCCHHHHHHHHHHcCCCeEEEe---------------------------------cCccccchh-----------ccCCC
Confidence 4568899999999999 99987 111111100 01356
Q ss_pred HHHHHHHHHHHHhcCccEEEEe
Q psy1075 457 REEIDKLRRDVEQDGLALIVLA 478 (624)
Q Consensus 457 ~~e~~~l~~~v~~~gl~~iv~~ 478 (624)
+++++.|++.+++.||.+..++
T Consensus 56 ~~~~~~l~~~l~~~gl~i~~~~ 77 (283)
T PRK13209 56 REQRLALVNALVETGFRVNSMC 77 (283)
T ss_pred HHHHHHHHHHHHHcCCceeEEe
Confidence 7888889999989999886554
Done!