RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1075
(624 letters)
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase,
hydrolase, phosphoprotein, protease; 3.14A {Drosophila
melanogaster}
Length = 1354
Score = 119 bits (298), Expect = 6e-28
Identities = 48/294 (16%), Positives = 86/294 (29%), Gaps = 28/294 (9%)
Query: 139 GCRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNITRPIGSRVPFC-- 196
+ ++GTS+A+P VAG VALL SGLK + +P S+K+ +S +G PF
Sbjct: 454 KSQLMNGTSMAAPHVAGAVALLISGLKQQ-NIEYSPYSIKRA-ISVTATKLGYVDPFAQG 511
Query: 197 AGELNVN-------------PQSKVFYLDLTECQYMWPYCTQPLYHGAIPIIVNVTI--L 241
G LNV F + + + Q + +I V +
Sbjct: 512 HGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIHLRQGVQRNSIDYNVYIEPIFY 571
Query: 242 NGMGVVGKILERPKWYPYLPHNGEFLEISMTYSDILWPWSGYLAVHISVSAAAAAWQGTV 301
N K L + ++ L G ++ + V G
Sbjct: 572 NDKEADPKDKFNFNVRLNLIASQPWV----QCGAFLDLSYGTRSIAVRVDPTGLQ-PGVH 626
Query: 302 QGHIEVTVESPPLEGEEGVRRSTVKLAVKANIIPTPPRHKRILWDQYHNLRYPQGYFPRD 361
I +G TV P + +++ + RD
Sbjct: 627 SAVIRAYDTDCVQKGSLFEIPVTVVQPHVLESDQNTPVFEPASSKGDNSVEFQPNTIQRD 686
Query: 362 NLKMKNDPLDWNGDHVHTNFKDLYQHLRNIGYYIEVLGT-PFTCFDARHYGVLL 414
+ + P + D + +++ P ++
Sbjct: 687 FILV---PERATWAELRMRITDPNRGEDIGKFFVHTNQLLPKQSCRKLETMKIV 737
Score = 92.2 bits (228), Expect = 2e-19
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 1 CRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNMFEQGSG 60
+ ++GTS+A+P VAG VALL SGLK + +P S+K+ + +A +L V+ F QG G
Sbjct: 455 SQLMNGTSMAAPHVAGAVALLISGLKQQ-NIEYSPYSIKRAISVTATKLGYVDPFAQGHG 513
Query: 61 KIDLLRAYQILNSYTPQASLSPS 83
+++ +A++ L +
Sbjct: 514 LLNVEKAFEHLTEHRQSKDNMLR 536
Score = 34.4 bits (78), Expect = 0.15
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 90 GIRGSGVKVAVFD-TGLSSGHTGFNN--VAERTDWTNENTLEDKLGHGTFVAGCRTLSGT 146
G +++ + T + F + V + + HGT V+ SG
Sbjct: 226 GDLDQALRIGEYSRTHETRNVDDFLSISVNVHDEGNVLEVVGMSSPHGTHVSS--IASGN 283
Query: 147 SVASPVVAGV 156
+S V GV
Sbjct: 284 H-SSRDVDGV 292
Score = 29.4 bits (65), Expect = 5.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 93 GSGVKVAVFDTGLSSGHTG 111
G V +A+FD+G+ TG
Sbjct: 35 GRDVTIAIFDSGVDPRATG 53
>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel,
hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1
PDB: 1wme_A 1wmf_A
Length = 434
Score = 70.0 bits (171), Expect = 7e-13
Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 2/110 (1%)
Query: 1 CRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLP-GVNMFEQGS 59
+ GTS+A+P+VAG VA L P+ +K L+A A + G QG
Sbjct: 248 YAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLGYPNGNQGW 307
Query: 60 GKIDLLRAYQILNSYTPQASLSPSSLFLPLGI-RGSGVKVAVFDTGLSSG 108
G++ L ++ + + + G +K+++ + +
Sbjct: 308 GRVTLDKSLNVAYVNESSSLSTSQKATYSFTATAGKPLKISLVWSDAPAS 357
Score = 58.8 bits (142), Expect = 3e-09
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 89 LGIRGSGVKVAVFDTGLSSGHTGF-------NNVAERTDWTNENTLEDKLGHGTFVAGCR 141
G+ G G VAV DTGL +G + N D GHGT VAG
Sbjct: 17 YGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGKITALYALGRTNNANDTNGHGTHVAGSV 76
Query: 142 TLSGTSV 148
+G++
Sbjct: 77 LGNGSTN 83
Score = 48.0 bits (114), Expect = 6e-06
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 139 GCRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQ 179
+ GTS+A+P+VAG VA L P+ +K
Sbjct: 247 KYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKA 287
>3t41_A Epidermin leader peptide processing serine protea; structural
genomics, center for structural genomics of infec
diseases, csgid; 1.95A {Staphylococcus aureus} PDB:
3qfh_A
Length = 471
Score = 63.4 bits (154), Expect = 1e-10
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 3 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNMFEQGSGKI 62
+GT++A+P V+G +AL+ K+ +P + L G G++
Sbjct: 402 YQAGTALATPKVSGALALIID--KYHLE--KHPDKAIELLYQHGTSKNNKPFSRYGHGEL 457
Query: 63 DLLRAYQILNSYTPQAS 79
D+ +A LN +AS
Sbjct: 458 DVYKA---LNVANQKAS 471
Score = 42.9 bits (101), Expect = 2e-04
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 16/64 (25%)
Query: 92 RGSGVKVAVFDTGLSSGH----------------TGFNNVAERTDWTNENTLEDKLGHGT 135
+ + K+A+ DTG+ H E + + + + D+ GHGT
Sbjct: 144 KHANTKIAIIDTGVMKNHDDLKNNFSTDSKNLVPLNGFRGTEPEETGDVHDVNDRKGHGT 203
Query: 136 FVAG 139
V+G
Sbjct: 204 MVSG 207
Score = 42.2 bits (99), Expect = 5e-04
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 142 TLSGTSVASPVVAGVVALLAS 162
+GT++A+P V+G +AL+
Sbjct: 402 YQAGTALATPKVSGALALIID 422
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 63.7 bits (154), Expect = 1e-10
Identities = 91/565 (16%), Positives = 147/565 (26%), Gaps = 203/565 (35%)
Query: 37 SMKQGLMASARRLPGV---NMFEQGSGKIDLLRAYQILNSYTPQASLSPSSLF-LPLGIR 92
++Q L+ R V + GSGK + A + SY Q + +F L L
Sbjct: 139 KLRQALL-ELRPAKNVLIDGVL--GSGKTWV--ALDVCLSYKVQCKM-DFKIFWLNLKNC 192
Query: 93 GSGVKV--------AVFDTGLSSGHTGFNNVAERTDWTNE------------NTL----- 127
S V D +S +N+ R N L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 128 -EDKLGHGTFVAGCRTLSGT---SVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVS 183
++ F C+ L T V + A ++ L H
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS--LDHHSMTLTPDEVKS----- 305
Query: 184 NITRPIGSRVPFCAGELNVNPQSKVFYLDLTE--CQYMWPYCTQPLYHGAIPIIVNVTIL 241
L+ PQ DL T P + II
Sbjct: 306 -----------LLLKYLDCRPQ------DLPREVLT------TNPR---RLSII------ 333
Query: 242 NGMGVVGKIL-ERP-KWYPYLPHNGEFLE--ISMTYSDILWPW---SGY--LA-----VH 287
+ + + W + N + L I + ++L P + L+ H
Sbjct: 334 ------AESIRDGLATWDNWKHVNCDKLTTIIESSL-NVLEPAEYRKMFDRLSVFPPSAH 386
Query: 288 ISVSAAAAAWQGTVQGHIEVTVESPPLEGEEGVRRSTVKLAVKANIIPTPPRHKRILWDQ 347
I + W +V + + + S L K +
Sbjct: 387 IPTILLSLIWF-------DVIKSDVMVVVNKLHKYS---LVEK--------------QPK 422
Query: 348 YHNLRYPQGYFPRDNLKMKNDPLDWNGDHVHTNFKDLYQHLRNIGYYIEVLGTPFTCFDA 407
+ P Y LK+K + N +H + D Y + FD+
Sbjct: 423 ESTISIPSIYL---ELKVKLE----NEYALHRSIVDHYNIPK--------------TFDS 461
Query: 408 RHYGVLLLD--LYQHLRNIGYYIEVLGTPFTCFDARHYGVLLLVDPEEEYHREEIDKLRR 465
LD Y H IG+ H L ++ E L R
Sbjct: 462 DDLIPPYLDQYFYSH---IGH---------------H---LKNIEHPERM------TLFR 494
Query: 466 DVEQDGLALIVLADWYNTDVMRKIKFYDENTRQWWLPETGGSNIPALNELLAVHGIRLGD 525
V D + + +KI+ W GS + L +L
Sbjct: 495 MVFLD-------FRF----LEQKIRHDSTA---WNAS---GSILNTLQQL---------- 527
Query: 526 RVYEGSITMNDRTLQYMSGTSIVQF 550
+ Y+ I ND + + I+ F
Sbjct: 528 KFYKPYICDNDPKYERLVNA-ILDF 551
Score = 34.8 bits (79), Expect = 0.089
Identities = 32/233 (13%), Positives = 57/233 (24%), Gaps = 66/233 (28%)
Query: 304 HIEVTVESPPLEGEEGVRR----------STVKLAVKANIIPTPPRHKRILWDQYHNLRY 353
HI + S G R V+ V+ + L
Sbjct: 53 HI---IMSKD--AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK----FLMSPIKT-EQ 102
Query: 354 PQGYFPRDNLKMKNDPLDWNGDHVHTN--------FKDLYQHLRNI--GYYIEVLGTPFT 403
Q + D L +N + V + L Q L + + + G
Sbjct: 103 RQPSMMTRMYIEQRDRL-YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL-- 159
Query: 404 CFDARHYG----VLLLDLYQHLR------------NIGYY------IEVLGTPFTCFDAR 441
G + LD+ + N+ +E+L D
Sbjct: 160 -------GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID-P 211
Query: 442 HYGVLLLVDPEEEYHREEI-DKLRRDVEQDGL--ALIVLADWYNTDVMRKIKF 491
++ + I +LRR ++ L+VL + N
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Score = 34.8 bits (79), Expect = 0.094
Identities = 34/247 (13%), Positives = 59/247 (23%), Gaps = 97/247 (39%)
Query: 370 LDWNGDHVHTNFKDLYQHLRNIGYYIEVLGTPFTCFDARHY--GVLLLDLYQHLRNIGYY 427
+D+ +KD+ + + F C D + +L + H+
Sbjct: 7 MDFETGEHQYQYKDILSV------FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 428 IEVLGTPFTCF---------------DARHYGVLL------LVDPEEEYHR--EEIDKLR 464
+ F +Y L+ P E+ D+L
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 465 RDVEQDGLALIVLADWYNTDVMRKIKFYDENTRQWWLPETGGSNIPALNEL-----LAVH 519
D + V A YN V R + RQ AL EL + +
Sbjct: 121 NDNQ-------VFAK-YN--VSRLQPY--LKLRQ------------ALLELRPAKNVLID 156
Query: 520 GIRLGDRVYEGSITMNDRTLQYMSGTSIVQFPTSG--VLVGAKLNNQGKKGVNPNAPMAG 577
G + G SG + + +
Sbjct: 157 G---------------------VLG--------SGKTWVALDVCLSYKVQCKMDFK---- 183
Query: 578 WSLRWLS 584
+ WL+
Sbjct: 184 --IFWLN 188
>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces
vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E
Length = 279
Score = 59.9 bits (146), Expect = 4e-10
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 3 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNMFEQGSGKI 62
+LSGTS+A+P VAGV LLAS + ++++ + +A ++ G G++
Sbjct: 220 SLSGTSMATPHVAGVAGLLAS-------QGRSASNIRAAIENTADKISGTG-TYWAKGRV 271
Query: 63 DLLRAYQ 69
+ +A Q
Sbjct: 272 NAYKAVQ 278
Score = 48.3 bits (116), Expect = 3e-06
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 92 RGSGVKVAVFDTGLSSGHTGF-NNVAERTDWT-NENTLEDKLGHGTFVAGCRTLSGTSVA 149
GSG K+A+ DTG+ S H V D+ N++T ++ GHGT AG + +
Sbjct: 28 EGSGAKIAIVDTGVQSNHPDLAGKVVGGWDFVDNDSTPQNGNGHGTHCAG--IAAAVTNN 85
Query: 150 SPVVAGV 156
S +AG
Sbjct: 86 STGIAGT 92
Score = 43.7 bits (104), Expect = 1e-04
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 142 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNITRPIGSRVPFC-AGEL 200
+LSGTS+A+P VAGV LLAS + ++++ + I + G +
Sbjct: 220 SLSGTSMATPHVAGVAGLLAS-------QGRSASNIRAAIENT-ADKISGTGTYWAKGRV 271
Query: 201 NVN 203
N
Sbjct: 272 NAY 274
>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}
Length = 347
Score = 59.7 bits (145), Expect = 9e-10
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 2 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNMFEQGSGK 61
T SGTS A+ +V+GV+A + S P +K+ L+ SA + P +
Sbjct: 266 GTGSGTSEATAIVSGVLAAMTS---CNP--RATATELKRTLLESADKYPSLVDKVTEGRV 320
Query: 62 IDLLRAYQILNSYTPQASLSPSSL 85
++ +A + + +
Sbjct: 321 LNAEKAISMFCK-KNYIPVRQGRM 343
Score = 43.2 bits (102), Expect = 2e-04
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 89 LGIRGSGVKVAVFDTGLSSGH-------TGFNNVAERTDWTNENTLEDKLGHGTFVAG 139
L + + V V+V D+G++ F+ + + + + + E HGT +A
Sbjct: 39 LTDKNTPVVVSVVDSGVAFIGGLSDSEFAKFSFTQDGSPFPVKKS-EALYIHGTAMAS 95
Score = 42.0 bits (99), Expect = 4e-04
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 141 RTLSGTSVASPVVAGVVALLAS 162
T SGTS A+ +V+GV+A + S
Sbjct: 266 GTGSGTSEATAIVSGVLAAMTS 287
>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1
Length = 280
Score = 59.1 bits (144), Expect = 1e-09
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 3 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNMFEQGSGKI 62
+SGTS+ASP VAG+ ALLAS N ++Q + +A ++ G G+I
Sbjct: 221 YMSGTSMASPHVAGLAALLAS-------QGRNNIEIRQAIEQTADKISGTG-TYFKYGRI 272
Query: 63 DLLRAYQ 69
+ A
Sbjct: 273 NSYNAVT 279
Score = 44.1 bits (105), Expect = 7e-05
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 93 GSGVKVAVFDTGLSSGHTGF-NNVAERTDWT-NENTLEDKLGHGTFVAGCRTLSGTSVAS 150
SG ++AV DTG+ H V + D+ N+ D HGT VAG + + +
Sbjct: 30 SSGQEIAVIDTGVDYTHPDLDGKVIKGYDFVDNDYDPMDLNNHGTHVAG--IAAAETNNA 87
Query: 151 PVVAGV 156
+AG+
Sbjct: 88 TGIAGM 93
Score = 41.8 bits (99), Expect = 4e-04
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 142 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNITRPIGSRVPFC-AGEL 200
+SGTS+ASP VAG+ ALLAS N ++Q I + G +
Sbjct: 221 YMSGTSMASPHVAGLAALLAS-------QGRNNIEIRQAIEQT-ADKISGTGTYFKYGRI 272
Query: 201 NVN 203
N
Sbjct: 273 NSY 275
>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease,
intracellular proteinase regulat; HET: CSX 1PE; 1.56A
{Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*
Length = 327
Score = 58.9 bits (143), Expect = 1e-09
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 3 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNMFEQGSGKI 62
LSGT++A+P VAG +AL+ + + ++ + L+ A + G +G+G +
Sbjct: 245 ELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPI-GFTAQAEGNGFL 303
Query: 63 DLLRAYQILNSYTPQASLS 81
L + + +
Sbjct: 304 -TLDLVERITGQFTEKGKK 321
Score = 46.9 bits (112), Expect = 1e-05
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 142 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNITRPIGSRVPFC-AGEL 200
LSGT++A+P VAG +AL+ + + ++ + + PIG G L
Sbjct: 245 ELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQ-LVRRATPIGFTAQAEGNGFL 303
Query: 201 NVNPQSKV 208
++ ++
Sbjct: 304 TLDLVERI 311
Score = 46.9 bits (112), Expect = 1e-05
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 13/76 (17%)
Query: 89 LGIRGSGVKVAVFDTGLSSGH--------TGFNNVAERTDWTNENTLEDKLGHGTFVAGC 140
+G+G + V DTG H G N + +E D GHGT VAG
Sbjct: 36 ASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLTTDYGG--DETNFSDNNGHGTHVAG- 92
Query: 141 RTLSGTSVASPVVAGV 156
T++ V GV
Sbjct: 93 -TVAAAE-TGSGVVGV 106
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus
kodakaraensis, hydrolas protease; 2.00A {Thermococcus
kodakarensis}
Length = 539
Score = 59.1 bits (143), Expect = 2e-09
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 3 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPG--VNMFEQGSG 60
GT++A+P VAG+ ALL P+ P +K L+ +A + + G+G
Sbjct: 354 AAPGTAMATPHVAGIAALLLQ---AHPS--WTPDKVKTALIETADIVKPDEIADIAYGAG 408
Query: 61 KIDLLRAYQILNSYTPQASLSPSS 84
+++ +A N + S+
Sbjct: 409 RVNAYKAAYYDNYAKLTFTGYVSN 432
Score = 55.6 bits (134), Expect = 3e-08
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 89 LGIRGSGVKVAVFDTGLSSGHTGF-NNVAERTDWT-NENTLEDKLGHGTFVAGCRTLSGT 146
LG GSG+ + + DTG+ + H V D+ + T D GHGT VA +GT
Sbjct: 134 LGYDGSGITIGIIDTGIDASHPDLQGKVIGWVDFVNGKTTPYDDNGHGTHVAS--IAAGT 191
Query: 147 SVASP-VVAGV 156
AS G+
Sbjct: 192 GAASNGKYKGM 202
Score = 41.8 bits (98), Expect = 6e-04
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 142 TLSGTSVASPVVAGVVALLAS 162
GT++A+P VAG+ ALL
Sbjct: 354 AAPGTAMATPHVAGIAALLLQ 374
>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A
{Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E*
1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E*
1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E*
1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...
Length = 281
Score = 57.2 bits (139), Expect = 3e-09
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 3 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNMFEQGSGKI 62
+GTS+ASP VAG AL+ S KH ++ L + +L G G I
Sbjct: 216 AYNGTSMASPHVAGAAALILS--KHPNW---TNTQVRSSLENTTTKLGDSF--YYGKGLI 268
Query: 63 DLLRAYQILNSY 74
++ A Q + +
Sbjct: 269 NVQAAAQHHHHH 280
Score = 48.7 bits (117), Expect = 2e-06
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 90 GIRGSGVKVAVFDTGLSSGHTGFNNVAER-TDWTNENTLEDKLGHGTFVAGCRTLSGTSV 148
G GS VKVAV D+G+ S H + N +D HGT VAG T++ +
Sbjct: 20 GYTGSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQDNNSHGTHVAG--TVAALN- 76
Query: 149 ASPVVAGV 156
S V GV
Sbjct: 77 NSIGVLGV 84
Score = 41.8 bits (99), Expect = 4e-04
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 142 TLSGTSVASPVVAGVVALLAS 162
+GTS+ASP VAG AL+ S
Sbjct: 216 AYNGTSMASPHVAGAAALILS 236
>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus}
SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A
1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A
1q5p_A* 1st3_A 1c9n_A*
Length = 269
Score = 57.2 bits (139), Expect = 4e-09
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 3 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNMFEQGSGKI 62
+L+GTS+A+P VAG AL+ P + ++ L +A L N GSG +
Sbjct: 210 SLNGTSMATPHVAGAAALVKQ---KNP--SWSNVQIRNHLKNTATSLGSTN--LYGSGLV 262
Query: 63 DLLRAYQ 69
+ A +
Sbjct: 263 NAEAATR 269
Score = 49.1 bits (118), Expect = 2e-06
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 90 GIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGCRTLSGTSVA 149
G+ GSGVKVAV DTG+S+ H N + E + +D GHGT VAG T++ +
Sbjct: 20 GLTGSGVKVAVLDTGIST-HPDLNIRGGASFVPGEPSTQDGNGHGTHVAG--TIAALN-N 75
Query: 150 SPVVAGV 156
S V GV
Sbjct: 76 SIGVLGV 82
Score = 42.5 bits (101), Expect = 2e-04
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 142 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNITRPIGSRVPFCAGELN 201
+L+GTS+A+P VAG AL+ P + ++ + +GS + +G +N
Sbjct: 210 SLNGTSMATPHVAGAAALVKQ---KNP--SWSNVQIRNHLKNT-ATSLGSTNLYGSGLVN 263
Query: 202 VN 203
Sbjct: 264 AE 265
>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein
inhibitor, hydrolase; 1.10A {Bacillus licheniformis}
SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A
1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A
2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ...
Length = 274
Score = 56.4 bits (137), Expect = 7e-09
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 3 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNMFEQGSGKI 62
TL+GTS+ASP VAG AL+ S KH + + ++ L ++A L G G I
Sbjct: 215 TLNGTSMASPHVAGAAALILS--KHPNL---SASQVRNRLSSTATYLGSSF--YYGKGLI 267
Query: 63 DLLRAYQ 69
++ A Q
Sbjct: 268 NVEAAAQ 274
Score = 51.0 bits (123), Expect = 4e-07
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 90 GIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGCRTLSGTSVA 149
G +G+ VKVAV DTG+ + H N V + E D GHGT VAG T++
Sbjct: 20 GFKGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDGNGHGTHVAG--TVAALD-N 76
Query: 150 SPVVAGV 156
+ V GV
Sbjct: 77 TTGVLGV 83
Score = 41.7 bits (99), Expect = 4e-04
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 142 TLSGTSVASPVVAGVVALLAS 162
TL+GTS+ASP VAG AL+ S
Sbjct: 215 TLNGTSMASPHVAGAAALILS 235
>4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase,
patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A
Length = 360
Score = 56.7 bits (137), Expect = 9e-09
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 3 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNMFE---QGS 59
L+GTS+A+PV+ G+ ALL S L+ + ++ +++ L+ +A + E
Sbjct: 287 RLTGTSMAAPVMTGISALLMS-LQVQQGKPVDAEAVRTALLKTAIPCDPEVVEEPERCLR 345
Query: 60 GKIDLLRAYQILN 72
G +++ A ++L
Sbjct: 346 GFVNIPGAMKVLF 358
Score = 42.5 bits (100), Expect = 3e-04
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 142 TLSGTSVASPVVAGVVALLAS 162
L+GTS+A+PV+ G+ ALL S
Sbjct: 287 RLTGTSMAAPVMTGISALLMS 307
Score = 33.2 bits (76), Expect = 0.21
Identities = 6/52 (11%), Positives = 10/52 (19%), Gaps = 3/52 (5%)
Query: 88 PLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAG 139
P+ ++ D GL + H V
Sbjct: 85 PITPEDYAAFQSIRDQGLKGKEKEEAL---EAVIPDTKDRIVLNDHACHVTS 133
>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A
{Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A
Length = 340
Score = 55.9 bits (135), Expect = 1e-08
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 2 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNMFEQGSGK 61
++GTS+A+P V+GV AL+ S + ++ PA +K L+++ G GSG
Sbjct: 270 SFMAGTSMATPHVSGVAALVIS-AANSVNKNLTPAELKDVLVSTTSPFNGRLDRALGSGI 328
Query: 62 IDLLRA 67
+D A
Sbjct: 329 VDAEAA 334
Score = 37.8 bits (88), Expect = 0.009
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 141 RTLSGTSVASPVVAGVVALLAS 162
++GTS+A+P V+GV AL+ S
Sbjct: 270 SFMAGTSMATPHVSGVAALVIS 291
Score = 32.4 bits (74), Expect = 0.44
Identities = 23/101 (22%), Positives = 31/101 (30%), Gaps = 35/101 (34%)
Query: 89 LGIRGSGVKVAVFDTGLSS-----------------------GHTGFNNVAERTDW---- 121
+G G V VAV DTG+ G + + DW
Sbjct: 27 MGFTGQNVVVAVVDTGILHHRDLNANVLPGYDFISNSQISLDGDGRDADPFDEGDWFDNW 86
Query: 122 ------TNENTLEDKLGHGTFVAGCRTLSGTSVASPVVAGV 156
D HG+ VAG T++ + VAGV
Sbjct: 87 ACGGRPDPRKERSDSSWHGSHVAG--TIAAVTNNRIGVAGV 125
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert
beta barrel domain hydrolase; HET: PMS; 1.40A
{Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Length = 441
Score = 55.9 bits (135), Expect = 2e-08
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 3 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRL--PGVNMFEQGSG 60
+GTS+A+P V+GV L+ S + P + + ++ L A+A L G + + G G
Sbjct: 364 YYNGTSMATPHVSGVATLVWS---YHPE--CSASQVRAALNATADDLSVAGRD-NQTGYG 417
Query: 61 KIDLLRAYQILNSYTPQASLSPS 83
I+ + A L+ + +
Sbjct: 418 MINAVAAKAYLDESCTGPTDPGT 440
Score = 47.4 bits (113), Expect = 9e-06
Identities = 32/176 (18%), Positives = 55/176 (31%), Gaps = 27/176 (15%)
Query: 3 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMK----------QGLMASARRLPGV 52
T+ G S S V L SG + PA A+ A ++ V
Sbjct: 220 TIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLV 279
Query: 53 NMFEQGSGKIDLLRAYQ-ILNSYTPQ-----ASLSPSSLFLPLGIRGSGVKVAVFDTGLS 106
+ + + + S P L S + V +
Sbjct: 280 ERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRA 339
Query: 107 SGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGCRTLSGTSVASPVVAGVVALLAS 162
+G + + T +N+ G+ + +GTS+A+P V+GV L+ S
Sbjct: 340 TGLALKAKLGQSTTVSNQ-------GNQDY----EYYNGTSMATPHVSGVATLVWS 384
Score = 45.9 bits (109), Expect = 3e-05
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 12/57 (21%)
Query: 91 IRGSGVKVAVFDTGLSSGH--------TGFNNVAERTDWTNENTLEDKLGHGTFVAG 139
+ + + D+G H TG NN N + HGT VAG
Sbjct: 19 SQAGNRTICIIDSGYDRSHNDLNANNVTGTNNS----GTGNWYQPGNNNAHGTHVAG 71
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide,
hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP:
c.41.1.1
Length = 671
Score = 56.2 bits (135), Expect = 2e-08
Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 9/118 (7%)
Query: 3 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNM-FEQGSGK 61
GTS+A+P V GVVA+L P + P +++ L +A G + G G
Sbjct: 376 YYQGTSMAAPHVTGVVAVLLQ---KFP--NAKPWQIRKLLENTAFDFNGNGWDHDTGYGL 430
Query: 62 IDLLRAYQILNSYTPQA---SLSPSSLFLPLGIRGSGVKVAVFDTGLSSGHTGFNNVA 116
+ L A Q + + G+ V + + TG + +A
Sbjct: 431 VKLDAALQGPLPTQGGVEEFQVVVTDAKGNFGVPTVFVSMMRDNGSCYYAKTGPDGIA 488
Score = 45.8 bits (108), Expect = 3e-05
Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 9/58 (15%)
Query: 90 GIRGSGVKVAVFDTGLSSGH--------TGFNNVAERTDWTNENTLEDKLGHGTFVAG 139
G+ + VAV DTG+ H G+ + GT VAG
Sbjct: 150 EASGTNIIVAVVDTGVDGTHPDLEGQVIAGYRPA-FDEELPAGTDSSYGGSAGTHVAG 206
Score = 40.8 bits (95), Expect = 0.001
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 142 TLSGTSVASPVVAGVVALLAS 162
GTS+A+P V GVVA+L
Sbjct: 376 YYQGTSMAAPHVTGVVAVLLQ 396
>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like
protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP:
c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*
Length = 310
Score = 54.6 bits (132), Expect = 3e-08
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 2 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNMFEQGSGK 61
T+SGTS+A+P V+G+ A + + P+ ++ ++ L A+ + + G
Sbjct: 244 NTISGTSMATPHVSGLAAKIWA---ENPS--LSNTQLRSNLQERAKSVDIKGGYGAAIGD 298
Query: 62 ID 63
Sbjct: 299 DY 300
Score = 49.6 bits (119), Expect = 1e-06
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 90 GIRGSGVKVAVFDTGLSSGHTGF-NNVAERTDWTNENTL-----EDKLGHGTFVAGCRTL 143
GSG+ +AV DTG+++ H NNV + D+T T D+ GHGT VAG T
Sbjct: 22 TTGGSGINIAVLDTGVNTSHPDLVNNVEQCKDFTGATTPINNSCTDRNGHGTHVAG--TA 79
Query: 144 SGTSVASPV-VAGV 156
+ + GV
Sbjct: 80 LADGGSDQAGIYGV 93
Score = 41.9 bits (99), Expect = 3e-04
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 141 RTLSGTSVASPVVAGVVALLAS 162
T+SGTS+A+P V+G+ A + +
Sbjct: 244 NTISGTSMATPHVSGLAAKIWA 265
>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A
{Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A
2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A
Length = 320
Score = 50.8 bits (122), Expect = 5e-07
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 3 TLSGTSVASPVVAGVVALLAS--------GLKHRPAGHINPASMKQGLMASARRL--PGV 52
TL GT++A+P V+GVVAL+ + L I+ +++ L +A L G
Sbjct: 241 TLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGW 300
Query: 53 NMFEQGSGKIDLLRA 67
+ + G G + A
Sbjct: 301 D-ADYGYGVVRAALA 314
Score = 44.7 bits (106), Expect = 4e-05
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 9/56 (16%)
Query: 92 RGSGVKVAVFDTGLSSGH--------TGFNNVAERTDWTNENTLEDKLGHGTFVAG 139
S ++VAV DTG+ H + + + T D+ GHGT V G
Sbjct: 27 SVSVIQVAVLDTGVDYDHPDLAANIAWCVSTLRGKVS-TKLRDCADQNGHGTHVIG 81
Score = 40.1 bits (94), Expect = 0.002
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 142 TLSGTSVASPVVAGVVALLAS 162
TL GT++A+P V+GVVAL+ +
Sbjct: 241 TLMGTAMATPHVSGVVALIQA 261
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 6e-07
Identities = 66/312 (21%), Positives = 105/312 (33%), Gaps = 87/312 (27%)
Query: 4 LSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNMFEQGSGKID 63
L G + G+V +A I + S R+ V +F G
Sbjct: 267 LKGATG---HSQGLVTAVA----------IAETDSWESFFVSVRKAITV-LFFIG----- 307
Query: 64 LLRAYQILNSYTPQASLSPSSLFLPLGIRGSGVK---VAVFDTGLSSGHTGFNNVAERTD 120
+R Y+ P SL PS L L GV +++ + L+ V + +
Sbjct: 308 -VRCYE----AYPNTSLPPSILEDSLE-NNEGVPSPMLSI--SNLTQEQ-----VQDYVN 354
Query: 121 WTNENTLEDKLGHGTFVAGCRTLSGTSVASPVVAG-VVAL--LASGLKHRPAGHINPASM 177
TN + K + V G + L VV+G +L L L+ A P+ +
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNL--------VVSGPPQSLYGLNLTLRKAKA----PSGL 402
Query: 178 KQGPVSNITRPIGSRVPFCAGELNVNPQSKVFYLDLTECQYMWPYCTQPLYHGAIPIIVN 237
Q SR+PF +L S F L + P+ + L A +I
Sbjct: 403 DQ-----------SRIPFSERKLKF---SNRF-LPVAS-----PFHS-HLLVPASDLINK 441
Query: 238 VTILNGMGVVGKILERPKWYPYLPHNGEFL-EISMTYSDILWPWSGYLAVHISVSAAAAA 296
+ N + K ++ P Y +G L +S + S+ + L V
Sbjct: 442 DLVKNNVSFNAKDIQIPV---YDTFDGSDLRVLSGSISERIVDCIIRLPVK--------- 489
Query: 297 WQGTVQG---HI 305
W+ T Q HI
Sbjct: 490 WETTTQFKATHI 501
Score = 50.0 bits (119), Expect = 2e-06
Identities = 97/592 (16%), Positives = 172/592 (29%), Gaps = 235/592 (39%)
Query: 44 ASARRLPGVNMFEQGSGKIDLLRAY----QILNSYTPQASLSPSSLFLPLGIRGSGVKV- 98
A A +L N K +L++ Y + P S S+LF + ++
Sbjct: 103 ALAAKLLQENDTTLVKTK-ELIKNYITARIMAKR--PFDKKSNSALFR--AVGEGNAQLV 157
Query: 99 AVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGCRTLSGTSVASPVVAGVVA 158
A+F G G N ++ E+ L R L T +V ++
Sbjct: 158 AIF------G--GQGN--------TDDYFEE-L---------RDLYQTY--HVLVGDLIK 189
Query: 159 LLASGLKHRPAGHINPASMKQGPVSNITRPIGSRVPFCAGELNV-----NPQSK--VFYL 211
A L ++ + F G LN+ NP + YL
Sbjct: 190 FSAETLSELIRTTLDAEKV-----------------FTQG-LNILEWLENPSNTPDKDYL 231
Query: 212 DLTECQYMWPYCTQPLYHGAIPIIVNVTILNGMGVVGKILERPKWYPYLPHNGEFLEI-- 269
+ P+ + P+I + + + + V K+L + P GE
Sbjct: 232 -----------LSIPI---SCPLIGVIQLAHYV-VTAKLLG------FTP--GELRSYLK 268
Query: 270 --SMTYSDILWPWSGYLAVHISVS--------AAAAA-----WQGTVQGH-------IEV 307
+ ++ AV I+ + + A + G V+ + +
Sbjct: 269 GATGHSQGLV------TAVAIAETDSWESFFVSVRKAITVLFFIG-VRCYEAYPNTSLPP 321
Query: 308 TVESPPLEGEEGVRRSTVKLAVKANIIPTPPRHKRILWDQYHNLRYPQGYFPRDNLKMKN 367
++ LE EGV + L++ + + N P G + + + N
Sbjct: 322 SILEDSLENNEGV--PSPMLSISN--LTQEQVQDYV---NKTNSHLPAG--KQVEISLVN 372
Query: 368 DPLDWNGDHVHTNF------KDLY---QHLRNI----GYYIEVLGTPFTCFDARHYGVLL 414
N + LY LR G ++ PF+
Sbjct: 373 GA---------KNLVVSGPPQSLYGLNLTLRKAKAPSG--LDQSRIPFS----------- 410
Query: 415 LDLYQHLRNIGYYIEVL--GTPFTCFDARHYGVLLLVDPEEEYHREEIDKLRRDVEQDGL 472
+ R + + L +PF H D + +D+ ++ +
Sbjct: 411 ----E--RKLKFSNRFLPVASPF------H----------SHLLVPASDLINKDLVKNNV 448
Query: 473 ALIVLADWYNTDVMRKIKFYDENTRQWWLPETGGSNIPALNELLAVHGIRLGDRVYEGSI 532
+ + D+ +I YD GS++ RV GSI
Sbjct: 449 S------FNAKDI--QIPVYDTFD---------GSDL----------------RVLSGSI 475
Query: 533 TMN------------DRTLQYMSGTSIVQF-P--TSGVLVGAKLNNQGKKGV 569
+ + T Q T I+ F P SG+ V N G GV
Sbjct: 476 SERIVDCIIRLPVKWETTTQ-FKATHILDFGPGGASGLGVLTHRNKDG-TGV 525
Score = 42.7 bits (100), Expect = 4e-04
Identities = 49/232 (21%), Positives = 74/232 (31%), Gaps = 100/232 (43%)
Query: 13 VVAG-VVAL--LASGLKHRPAGHINPASMKQGLMASARRLPGVNMFEQGSGKIDLLRAYQ 69
VV+G +L L L+ A P+ + Q R+P F + R +
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKA----PSGLDQ------SRIP----FSE--------RKLK 415
Query: 70 ILNSYTPQASLSP--SSLFLP-------------LGIRGSGVKVAVFDTGLSSGHTGFN- 113
N + P AS P S L +P + +++ V+DT G +
Sbjct: 416 FSNRFLPVAS--PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT-----FDGSDL 468
Query: 114 -----NVAERT---------DWTNENTLEDKLGHG-TFVAGCRTLSGTSVASPVVAGVVA 158
+++ER W E T + K H F G +G+
Sbjct: 469 RVLSGSISERIVDCIIRLPVKW--ETTTQFKATHILDFGPG------------GASGL-- 512
Query: 159 LLASGLKHRPAGHINPASMKQGPVSNITRPIGSRVPFCAGELNVNPQSKVFY 210
L HR K G T G RV AG L++NP +
Sbjct: 513 ---GVLTHR---------NKDG-----T---GVRV-IVAGTLDINPDDDYGF 543
Score = 33.1 bits (75), Expect = 0.33
Identities = 75/528 (14%), Positives = 143/528 (27%), Gaps = 190/528 (35%)
Query: 222 YCTQP--LYHGAIPIIVNVTILNGMGVVGKILERPK--WYPYLPHNGEFLEISMTYSDIL 277
Y T+P L HG++ +L V P ++ +F +I ++
Sbjct: 4 YSTRPLTLSHGSL----EHVLL-----V------PTASFFIASQLQEQFNKILPEPTEGF 48
Query: 278 W----PWS---------GYLAVHISVSAAAAAWQ--GTVQGHIE-----------VTVES 311
P + GY++ + S Q E + +
Sbjct: 49 AADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL 108
Query: 312 PP-LEGEEGVRRSTVKLAVKANII---PTPPRHKRILWD--QYHNLR-YP----QG---- 356
+ + +K + A I+ P + L+ N + QG
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD 168
Query: 357 YFPRDNLKMKNDPLDWNGDHVHTNFKDLYQHLR-NIGYYIEVLG--------TPFTCFDA 407
YF + L+ DLYQ +G I+ T
Sbjct: 169 YF--EELR------------------DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 408 RHYGVLLLDLYQHLRN------IGYYIEVLGTPFTC-----FDARHYGVLLLVDPEEEYH 456
G L++ + L N Y + + P +C HY V + +
Sbjct: 209 FTQG---LNILEWLENPSNTPDKDYLLSI---PISCPLIGVIQLAHYVVTAKL---LGFT 259
Query: 457 REEIDKLRRDVEQDGLALIV---LA---DW---Y-NTDVMRKIKFY-----DENTRQWWL 501
E+ + L+ +A W + + + F+ E L
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Query: 502 P-------ETGGSNIPALNELLAVHGIRLGDRVYEGSITMNDRTLQYMSGTSIV------ 548
P +P+ +L++ + ++V + + + L I
Sbjct: 320 PPSILEDSLENNEGVPSP--MLSISNLTQ-EQV-QDYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 549 QF-----PTSGVLVGAKLN----------NQGK--------KGVN---P-NAP------- 574
P S L G L +Q + K N P +P
Sbjct: 376 NLVVSGPPQS--LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV 433
Query: 575 ---------MAGWSLRWLSTSWRFTVFVSGTGYT-RYMSGT---SIVQ 609
+ ++ + + + V+ + G R +SG+ IV
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD 481
Score = 30.8 bits (69), Expect = 1.8
Identities = 26/138 (18%), Positives = 42/138 (30%), Gaps = 43/138 (31%)
Query: 479 DWYNT-DVMRKIKFYDENTRQWWLPETGGSNIPAL---N-ELLAVH-GIRLGDRVYEGSI 532
D Y T + + ++ + +T G +I + N L +H G G R+ E
Sbjct: 1634 DLYKTSKAAQDV--WNRADNHFK--DTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 533 TM-------------------NDRTLQYM-SG-------TSIVQFP---TSGVLVGAKLN 562
M N+ + Y T Q P L
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ-PALTLMEKAAFEDLK 1748
Query: 563 NQGKKGVNPNAPMAGWSL 580
++G + +A AG SL
Sbjct: 1749 SKG--LIPADATFAGHSL 1764
>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase;
1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A
2zwo_A
Length = 395
Score = 50.9 bits (122), Expect = 7e-07
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 3 TLSGTSVASPVVAGVVALLAS--------GLKHRPAGHINPASMKQGLMASARRL--PGV 52
TL GT++A+P V+GVVAL+ + L I+ +++ L +A L G
Sbjct: 316 TLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGW 375
Query: 53 NMFEQGSGKIDLLRA 67
+ + G G + A
Sbjct: 376 DA-DYGYGVVRAALA 389
Score = 45.1 bits (107), Expect = 4e-05
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 93 GSGVKVAVFDTGLSSGH--------TGFNNVAERTDWTNENTLEDKLGHGTFVAG 139
S ++VAV DTG+ H + + + T D+ GHGT V G
Sbjct: 103 VSVIQVAVLDTGVDYDHPDLAANIAWCVSTLRGKVS-TKLRDCADQNGHGTHVIG 156
Score = 40.5 bits (95), Expect = 0.001
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 142 TLSGTSVASPVVAGVVALLAS 162
TL GT++A+P V+GVVAL+ +
Sbjct: 316 TLMGTAMATPHVSGVVALIQA 336
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus
pyogenes} PDB: 3eif_A*
Length = 926
Score = 51.2 bits (122), Expect = 8e-07
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 3 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASM---KQGLMASARRLPGVNM----- 54
LSGTS+++P+VAG++ LL + + + K+ LM+SA L +
Sbjct: 402 KLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFS 461
Query: 55 -FEQGSGKIDLLRA 67
+QG+G +D +A
Sbjct: 462 PRQQGAGAVDAKKA 475
Score = 39.3 bits (91), Expect = 0.004
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 142 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQ 179
LSGTS+++P+VAG++ LL + + +
Sbjct: 402 KLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDL 439
Score = 38.1 bits (88), Expect = 0.010
Identities = 17/106 (16%), Positives = 26/106 (24%), Gaps = 38/106 (35%)
Query: 90 GIRGSGVKVAVFDTGLSSGHTGF--------------------------------NNVAE 117
+G+G VAV D G H + + VA
Sbjct: 13 AGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAY 72
Query: 118 RTDWTNENTLEDKLGHGTFVAGCRTLSGTSVASPVVAGVVALLASG 163
D++ + HGT V+ G + G
Sbjct: 73 YHDYSKDGKTAVDQEHGTHVS------GILSGNAPSETKEPYRLEG 112
>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K,
subtilase, psychrotrophic, psychrophilic, hydrolase;
1.80A {Serratia SP}
Length = 278
Score = 46.0 bits (110), Expect = 2e-05
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 93 GSGVKVAVFDTGLSSGHTGFNNVAER--TDWTNENTLEDKLGHGTFVAGCRTLSGTS--V 148
GSGV V DTG+ + H F A N+ D GHGT VAG T+ G++ V
Sbjct: 30 GSGVTAFVIDTGVLNTHNEFGGRASSGYDFIDNDYDATDCNGHGTHVAG--TIGGSTYGV 87
Query: 149 A 149
A
Sbjct: 88 A 88
Score = 44.9 bits (107), Expect = 3e-05
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 2 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASA 46
T+SGTS+ASP VAGV AL +++PA + L A
Sbjct: 218 NTISGTSMASPHVAGVAALYLDE-----NPNLSPAQVTNLLKTRA 257
Score = 41.4 bits (98), Expect = 5e-04
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 141 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQ 179
T+SGTS+ASP VAGV AL +++PA +
Sbjct: 218 NTISGTSMASPHVAGVAALYLDE-----NPNLSPAQVTN 251
>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A
{Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A
2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A
2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A*
3gt4_A* 3l1k_A 3osz_A ...
Length = 279
Score = 46.0 bits (110), Expect = 2e-05
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 2 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASA 46
R++SGTS+A+P VAG+ A L + G AS + + +A
Sbjct: 218 RSISGTSMATPHVAGLAAYLMT------LGKTTAASACRYIADTA 256
Score = 44.1 bits (105), Expect = 7e-05
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 93 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGCRTLSGTS--VA 149
G G V V DTG+ + H F A + T + D GHGT AG T+ + VA
Sbjct: 30 GQGSCVYVIDTGIEASHPEFEGRA-QMVKTYYYSSRDGNGHGTHCAG--TVGSRTYGVA 85
Score = 42.6 bits (101), Expect = 2e-04
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 141 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQ 179
R++SGTS+A+P VAG+ A L + G AS +
Sbjct: 218 RSISGTSMATPHVAGLAAYLMT------LGKTTAASACR 250
>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation,
psychrotrophic, subtilisin-like proteinase, depentent,
hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*
Length = 284
Score = 45.7 bits (109), Expect = 2e-05
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 93 GSGVKVAVFDTGLSSGHTGFNNVAER--TDWTNENTLEDKLGHGTFVAG 139
G GV V DTG+++ H F + N+ D GHGT VAG
Sbjct: 28 GFGVTAYVIDTGVNNNHEEFGGRSVSGYDFVDNDADSSDCNGHGTHVAG 76
Score = 44.5 bits (106), Expect = 5e-05
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 2 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASA 46
+T+SGTS+A+P VAGV AL + P + L + A
Sbjct: 214 KTISGTSMATPHVAGVAALYLQE-----NNGLTPLQLTGLLNSRA 253
Score = 41.0 bits (97), Expect = 6e-04
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 141 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQ 179
+T+SGTS+A+P VAGV AL + P +
Sbjct: 214 KTISGTSMATPHVAGVAALYLQE-----NNGLTPLQLTG 247
>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart
disease, hypercholest low density lipoprotein receptor,
autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens}
PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B
3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A
Length = 546
Score = 45.7 bits (108), Expect = 4e-05
Identities = 24/138 (17%), Positives = 39/138 (28%), Gaps = 20/138 (14%)
Query: 2 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNMFEQGSGK 61
+ SGTS A+ VAG+ A++ S + A ++Q L+ + +
Sbjct: 228 VSQSGTSQAAAHVAGIAAMMLSA-----EPELTLAELRQRLIHFSAK-----------DV 271
Query: 62 IDLLRAYQILNSYTPQASLSPSSLFLPLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDW 121
I+ + TP + G + V SG T R
Sbjct: 272 INEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVW----SAHSGPTRMATAIARCAP 327
Query: 122 TNENTLEDKLGHGTFVAG 139
E G
Sbjct: 328 DEELLSCSSFSRSGKRRG 345
Score = 44.9 bits (106), Expect = 6e-05
Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 13/68 (19%)
Query: 93 GSGVKVAVFDTGLSSGHT---------GFNNVAERTDWTNENTLEDKLGHGTFVAGCRTL 143
GS V+V + DT + S H F NV E HGT +AG +
Sbjct: 25 GSLVEVYLLDTSIQSDHREIEGRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAG--VV 82
Query: 144 SGTS--VA 149
SG VA
Sbjct: 83 SGRDAGVA 90
Score = 41.8 bits (98), Expect = 6e-04
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 141 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQ 179
+ SGTS A+ VAG+ A++ S + A ++Q
Sbjct: 228 VSQSGTSQAAAHVAGIAAMMLSA-----EPELTLAELRQ 261
>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle-
degrading protease, nematodes, hydrolase, secreted,
zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A
Length = 279
Score = 44.9 bits (107), Expect = 4e-05
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 93 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAG 139
G+G V V DTG+ H F A + + +T D GHGT AG
Sbjct: 31 GAGACVYVIDTGVEDTHPDFEGRA-KQIKSYASTARDGHGHGTHCAG 76
Score = 43.3 bits (103), Expect = 1e-04
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 2 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASA 46
T+SGTS+A+P +AG+ A L + +M + +
Sbjct: 219 NTISGTSMATPHIAGLAAYLFG------LEGGSAGAMCGRIQTLS 257
Score = 40.6 bits (96), Expect = 9e-04
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 141 RTLSGTSVASPVVAGVVALLASGLKHRPA 169
T+SGTS+A+P +AG+ A L
Sbjct: 219 NTISGTSMATPHIAGLAAYLFGLEGGSAG 247
>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding,
inhibitor, hydrolase-hydro inhibitor complex; HET: PMS;
1.95A {Thermus aquaticus}
Length = 276
Score = 44.5 bits (106), Expect = 5e-05
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 93 GSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGCRTLSGTS--VA 149
G GV V V DTG+ + H F A +D GHGT VAG T+ G + VA
Sbjct: 30 GRGVNVYVIDTGIRTTHREFGGRARVGYDALGGNGQDCNGHGTHVAG--TIGGVTYGVA 86
Score = 44.5 bits (106), Expect = 5e-05
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 2 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASA 46
+TL+GTS+A+P VAGV AL PAS+ ++ A
Sbjct: 216 QTLNGTSMATPHVAGVAALYLEQ-----NPSATPASVASAILNGA 255
Score = 41.0 bits (97), Expect = 6e-04
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 141 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQ 179
+TL+GTS+A+P VAGV AL PAS+
Sbjct: 216 QTLNGTSMATPHVAGVAALYLEQ-----NPSATPASVAS 249
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL
receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}
Length = 692
Score = 45.4 bits (107), Expect = 5e-05
Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 13/68 (19%)
Query: 93 GSGVKVAVFDTGLSSGHT---------GFNNVAERTDWTNENTLEDKLGHGTFVAGCRTL 143
GS V+V + DT + S H F NV E HGT +AG +
Sbjct: 177 GSLVEVYLLDTSIQSDHREIEGRVMVTDFENVPEEDGTRFHRQASKCDSHGTHLAG--VV 234
Query: 144 SGTS--VA 149
SG VA
Sbjct: 235 SGRDAGVA 242
Score = 45.0 bits (106), Expect = 7e-05
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 2 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASA 46
+ SGTS A+ VAG+ A++ S + A ++Q L+ +
Sbjct: 380 VSQSGTSQAAAHVAGIAAMMLSA-----EPELTLAELRQRLIHFS 419
Score = 41.5 bits (97), Expect = 7e-04
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 141 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQ 179
+ SGTS A+ VAG+ A++ S + A ++Q
Sbjct: 380 VSQSGTSQAAAHVAGIAAMMLSA-----EPELTLAELRQ 413
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET:
DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Length = 621
Score = 41.6 bits (97), Expect = 7e-04
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 4 LSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPG----VNMFEQGS 59
+SGTS++ P + G+ + + P +PA++K LM +A + F GS
Sbjct: 411 ISGTSMSCPHITGIATYV---KTYNP--TWSPAAIKSALMTTASPMNARFNPQAEFAYGS 465
Query: 60 GKIDLLRA 67
G ++ L+A
Sbjct: 466 GHVNPLKA 473
Score = 39.7 bits (92), Expect = 0.003
Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 7/99 (7%)
Query: 143 LSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQG-PVSNITRPIGSRVPFCAGELN 201
+SGTS++ P + G+ + + I A M P++ P F G +
Sbjct: 411 ISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQA---EFAYGSGH 467
Query: 202 VNPQSKV---FYLDLTECQYMWPYCTQPLYHGAIPIIVN 237
VNP V D E Y+ C Q A+ I
Sbjct: 468 VNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITG 506
Score = 28.5 bits (63), Expect = 7.9
Identities = 24/121 (19%), Positives = 35/121 (28%), Gaps = 40/121 (33%)
Query: 81 SPSSLFLPLGIR-----GSGVKVAVFDTGLSSGHTGFNN--------------------- 114
S L PL + S + V V DTG+ F++
Sbjct: 4 SWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFR 63
Query: 115 ------------VAERTDWTNENTLEDKLGHGTFVAGCRTLSGTSVASPVVAGVVALLAS 162
+ + N D GHGT A T +G V+ + G+ A
Sbjct: 64 CNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTAS--TAAGGLVSQANLYGLGLGTAR 121
Query: 163 G 163
G
Sbjct: 122 G 122
>2oxa_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas
sobria} PDB: 3hjr_A
Length = 600
Score = 39.5 bits (91), Expect = 0.003
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 89 LGIRGSGVKVAVFDTGLSSGHTGF-NNVAERTDWTNENTLE-----DKLGHGTFVAG 139
G+ G GV VAV D GL+ H +NV + + + GHGT V+G
Sbjct: 65 TGVLGHGVNVAVVDDGLAIAHPDLADNVRPGSKNVVTGSDDPTPTDPDTGHGTSVSG 121
Score = 30.7 bits (68), Expect = 1.7
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 2 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLP 50
++GTS A+P +G +ALL S P ++ ++ L SA R+
Sbjct: 330 GVMNGTSSATPSTSGAMALLMS---AYP--DLSVRDLRDLLARSATRVD 373
>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET:
DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus}
SCOP: b.18.1.20 c.41.1.1
Length = 471
Score = 39.3 bits (91), Expect = 0.003
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 10/61 (16%)
Query: 89 LGIRGSGVKVAVFDTGLSSGHT----------GFNNVAERTDWTNENTLEDKLGHGTFVA 138
G G G+ V++ D G+ H F+ + D T + HGT A
Sbjct: 33 QGFTGHGIVVSILDDGIEKNHPDLAGNYDPGASFDVNDQDPDPQPRYTQMNDNRHGTRCA 92
Query: 139 G 139
G
Sbjct: 93 G 93
Score = 36.6 bits (84), Expect = 0.021
Identities = 21/128 (16%), Positives = 43/128 (33%), Gaps = 21/128 (16%)
Query: 3 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNMF------- 55
+ +GTS ++P+ AG++AL ++ M+ ++ +++
Sbjct: 256 SHTGTSASAPLAAGIIALTLEA-----NKNLTWRDMQHLVVQTSKPAHLNADDWATNGVG 310
Query: 56 -----EQGSGKIDLLRAYQILNSYT---PQASLSPSSLFLPLGIRGSGVKVAVFDTGLSS 107
G G +D + ++T PQ L P I G ++V T
Sbjct: 311 RKVSHSYGYGLLDAGAMVALAQNWTTVAPQRKCIVEILVEPKDI-GKRLEVRKAVTACLG 369
Query: 108 GHTGFNNV 115
+
Sbjct: 370 EPNHITRL 377
Score = 32.7 bits (74), Expect = 0.35
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 142 TLSGTSVASPVVAGVVALLASG 163
+ +GTS ++P+ AG++AL
Sbjct: 256 SHTGTSASAPLAAGIIALTLEA 277
>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT
like protease, serine protease; HET: NDG; 1.90A
{Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB:
1r64_A* 1ot5_A*
Length = 503
Score = 39.3 bits (91), Expect = 0.004
Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 9/75 (12%)
Query: 89 LGIRGSGVKVAVFDTGLSSGHTGF-NNVAERTDW------TNENTLEDKLGHGTFVAGCR 141
I G+GV A+ D GL + +N W HGT AG
Sbjct: 49 NNITGAGVVAAIVDDGLDYENEDLKDNFCAEGSWDFNDNTNLPKPRLSDDYHGTRCAG-- 106
Query: 142 TLSGTSVASPVVAGV 156
++ + GV
Sbjct: 107 EIAAKKGNNFCGVGV 121
Score = 33.5 bits (76), Expect = 0.22
Identities = 33/173 (19%), Positives = 60/173 (34%), Gaps = 27/173 (15%)
Query: 3 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNMFEQ----- 57
+ GTS A+P+ AGV LL L+ P + ++ + SA L +
Sbjct: 267 SHGGTSAAAPLAAGVYTLL---LEANPN--LTWRDVQYLSILSAVGLEKNADGDWRDSAM 321
Query: 58 --------GSGKIDLLRAYQILNSYTPQASLSPSSLFLPLGIRGSGVKVAVFDTGLSSGH 109
G GKID A++++ +++ + F + S + +T S
Sbjct: 322 GKKYSHRYGFGKID---AHKLIEMSKTWENVNAQTWFYLPTLYVSQSTNSTEETLESV-- 376
Query: 110 TGFNNVAERTDWTNENTLEDKLGHGTFVAGCRTLSGTSVASPVVAGVVALLAS 162
+ N +E R + + SP AG+++ L
Sbjct: 377 --ITISEKSLQDANFKRIEHVTVTVDIDTEIRGTTTVDLISP--AGIISNLGV 425
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET:
NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Length = 649
Score = 37.0 bits (85), Expect = 0.020
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 18/77 (23%)
Query: 4 LSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNM--------- 54
SGTS+A+P AG+ A+L P +P++++ +M +A L
Sbjct: 422 ESGTSMAAPHAAGIAAML---KAAHP--EWSPSAIRSAMMTTADPLDNTRKPIKDSDNNK 476
Query: 55 ----FEQGSGKIDLLRA 67
+ G+G +D RA
Sbjct: 477 AATPLDMGAGHVDPNRA 493
Score = 33.6 bits (76), Expect = 0.21
Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 10/105 (9%)
Query: 143 LSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQG-PVSNITRPIGSRV------PF 195
SGTS+A+P AG+ A+L + I A M P+ N +PI P
Sbjct: 422 ESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDSDNNKAATPL 481
Query: 196 CAGELNVNPQSKV---FYLDLTECQYMWPYCTQPLYHGAIPIIVN 237
G +V+P + D T Y+ C+ I
Sbjct: 482 DMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIAR 526
Score = 28.9 bits (64), Expect = 5.7
Identities = 25/124 (20%), Positives = 32/124 (25%), Gaps = 42/124 (33%)
Query: 80 LSPSSLFLPLGIRGSGVKVAVFDTGLSSGHTGFNNV------------------------ 115
L+PSS P G V VAV D+G+ F +
Sbjct: 10 LNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMC 69
Query: 116 ----------------AERTDWTNENTLEDKLGHGTFVAGCRTLSGTSVASPVVAGVVAL 159
+ T N+ D GHGT A +G G
Sbjct: 70 NRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCAS--ITAGNFAKGVSHFGYAPG 127
Query: 160 LASG 163
A G
Sbjct: 128 TARG 131
>1p6v_A SSRA-binding protein; SMPB, tmRNA, trans-translation, protein-RNA
complex, RNA binding protein/RNA complex; 3.20A {Aquifex
aeolicus} SCOP: b.111.1.1 PDB: 2ob7_B 1k8h_A 1zc8_K
Length = 156
Score = 33.3 bits (77), Expect = 0.087
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 7/30 (23%)
Query: 446 LLLVDPEEEYHREEIDKLRRDVEQDGLALI 475
LLL H+ EI +L V++ G +I
Sbjct: 85 LLL-------HKREIMRLYGKVQEKGYTII 107
>1wjx_A Small protein B, SSRA-binding protein; RNA binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.70A {Thermus
thermophilus} SCOP: b.111.1.1 PDB: 3iz4_B 2czj_A*
Length = 122
Score = 32.1 bits (74), Expect = 0.15
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 7/32 (21%)
Query: 446 LLLVDPEEEYHREEIDKLRRDVEQDGLALIVL 477
LLL H+ E+ +L VEQ GL L+ L
Sbjct: 78 LLL-------HKHELRRLLGKVEQKGLTLVPL 102
>1j1h_A Small protein B; SMPB, SSRA associated protein, OB fold, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Thermus thermophilus} SCOP:
b.111.1.1 PDB: 4abr_2* 3iyq_B 3iyr_B
Length = 144
Score = 32.5 bits (75), Expect = 0.17
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 7/30 (23%)
Query: 446 LLLVDPEEEYHREEIDKLRRDVEQDGLALI 475
LLL H+ E+ +L VEQ GL L+
Sbjct: 79 LLL-------HKHELRRLLGKVEQKGLTLV 101
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 31.8 bits (72), Expect = 0.70
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 10/95 (10%)
Query: 375 DHVHTNFKDLYQHLRNIGYYIEVLGTPFTCFDARHYGVLLLDLYQHLRNIGYYIEVLGTP 434
+ L +R I +++LG P + + + + + G+ + L P
Sbjct: 380 RRILQAADRLKAGVRAIPS-LKILGDPLWVIAVASDELNIYQVMEEMAGRGWRLNGLHRP 438
Query: 435 FTCFDARHYGVLLLVDPEEEYHREEIDKLRRDVEQ 469
A H + L +D+ D++
Sbjct: 439 ----PAFHVALTLRH-----TEPGVVDRFLADLQD 464
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair,
hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A
2zxp_A 1ir6_A
Length = 666
Score = 29.6 bits (67), Expect = 3.6
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 9/44 (20%)
Query: 16 GVVALLASGLK---HRPAGHINPASMKQGLMASARRLPGVNMFE 56
GV+ ++AS + RP A K + R L ++ E
Sbjct: 342 GVMGIVASRILEATLRPV--FLVAQGK----GTVRSLAPISAVE 379
>1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism,
sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A
{Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A
1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A
1siu_A 1zvk_A
Length = 552
Score = 29.5 bits (65), Expect = 3.8
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 144 SGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGP 181
GT+ +P+ A +VA + L +P G++NP + P
Sbjct: 463 GGTAAVAPLFAALVARINQKL-GKPVGYLNPTLYQLPP 499
Score = 29.1 bits (64), Expect = 4.8
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 5 SGTSVASPVVAGVVALLASGLKHRPAGHINP 35
GT+ +P+ A +VA + L +P G++NP
Sbjct: 463 GGTAAVAPLFAALVARINQKL-GKPVGYLNP 492
>3e38_A Two-domain protein containing predicted PHP-like dependent
phosphoesterase; structural genomics; 2.20A {Bacteroides
vulgatus atcc 8482}
Length = 343
Score = 29.2 bits (64), Expect = 4.0
Identities = 18/126 (14%), Positives = 32/126 (25%), Gaps = 17/126 (13%)
Query: 372 WNGD-HVHTNFKD-------LYQHLRNIGYYIEVLGTPFTCFDARHYGVLLLDLYQHLRN 423
D H+H+ F D G ++ + H ++ D +
Sbjct: 19 LKCDFHMHSVFSDGLVWPTVRVDEAYRDG--LDAISLTEHIEYRPHKQDVVSDHNRSFDL 76
Query: 424 IGYYIEVLGTPF-------TCFDARHYGVLLLVDPEEEYHREEIDKLRRDVEQDGLALIV 476
E LG H+ + L D ++ D R +Q
Sbjct: 77 CREQAEKLGILLIKGSEITRAMAPGHFNAIFLSDSNPLEQKDYKDAFREAKKQGAFMFWN 136
Query: 477 LADWYN 482
W +
Sbjct: 137 HPGWDS 142
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 29.1 bits (64), Expect = 4.7
Identities = 40/266 (15%), Positives = 74/266 (27%), Gaps = 24/266 (9%)
Query: 289 SVSAAAAAWQGTVQGHIEVTVESPPLEGEEGVRRSTVKLAVKANIIPTPPRHKRILWDQY 348
+ + + G + + P G E + L P
Sbjct: 33 CILSGLLSHYGKKILVL----DRNPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWN 88
Query: 349 HNLRYPQGYFPRDNLKMKNDPLDWNGDHVHTNFKDL-----YQHLRNIGYYIEVLGTPFT 403
+L P+ NL L + + + YQH + E
Sbjct: 89 VDL-IPKFILVGGNLVK---ILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKVP 144
Query: 404 CFDARHYGVLLLDLYQHLRNIGYYIEVLGTPFTCFDARHYGVLLLVDPEEEYHREEIDKL 463
D LL L + R +Y V + + E Y + +L
Sbjct: 145 ATDMEALVSPLLSLMEKNRCKNFYQYVSEWDANKRNTWDNLDPYKLTMLEIYKHFNLCQL 204
Query: 464 RRDVEQDGLALIVLADWYNT---DVMRKIKFYDEN-----TRQWWLPETGGSNIP-ALNE 514
D +AL + D+ + +IK Y ++ + P G IP +
Sbjct: 205 TIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSISAFGKSPFIYPLYGLGGIPEGFSR 264
Query: 515 LLAVHG--IRLGDRVYEGSITMNDRT 538
+ A++G L V + +++
Sbjct: 265 MCAINGGTFMLNKNVVDFVFDDDNKV 290
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 29.0 bits (63), Expect = 5.8
Identities = 27/193 (13%), Positives = 53/193 (27%), Gaps = 24/193 (12%)
Query: 293 AAAAWQGTVQGHIEVTVESPPLEGEEGVRRSTVKLAVKANIIPTPPR--HKRILWDQYHN 350
AA+ +QG ++T+ P GV +T IP + +
Sbjct: 40 AASYLGKALQGTADITLLQAPDIPTLGVGEAT---------IPNLQTAFFDFLGIPEDEW 90
Query: 351 LRYPQGYFPRDNLKM--KNDPLDWNGDHVHTNFKDLYQHLRNIGYYIEVLGTPFTCFDAR 408
+R + + + + D + H + Y E + FD
Sbjct: 91 MRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRS 150
Query: 409 HYGVLLLDLYQHLRNIGYYIEVLGTPFTC-----------FDARHYGVLLLVDPEEEYHR 457
+ G + ++ +P FDA L E+
Sbjct: 151 YRGKTVEPFDYACYKEPVILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLGV 210
Query: 458 EEIDKLRRDVEQD 470
++ V++D
Sbjct: 211 RHVEDRVEHVQRD 223
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ
furiosus, X-RAY analysis, stability, calorimetry, lyase;
2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A*
2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Length = 248
Score = 28.7 bits (65), Expect = 5.9
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 12/60 (20%)
Query: 425 GYY--IEVLGTPFTCFDARHYGV--LLLVD--PEEEYHREEIDKLRRDVEQDGLALIVLA 478
YY I G +A+ GV +L+VD + ++G+ + LA
Sbjct: 87 TYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHA------KEFTEIAREEGIKTVFLA 140
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics,
lyase, NPPSFA, national project on PROT structural and
functional analyses; 2.00A {Aquifex aeolicus}
Length = 262
Score = 28.7 bits (65), Expect = 6.0
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
Query: 425 GYY--IEVLGTPFTCFDARHYGV--LLLVD--PEEEYHREEIDKLRRDVEQDGLALIVLA 478
YY I +G C +R G+ ++ D PEE ++L+ +++ L+ + L
Sbjct: 101 TYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEA------EELKAVMKKYVLSFVPLG 154
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for
structural genomics of infec diseases, csgid, lyase;
2.37A {Campylobacter jejuni}
Length = 252
Score = 28.3 bits (64), Expect = 6.0
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 12/60 (20%)
Query: 425 GYY--IEVLGTPFTCFDARHYGV--LLLVD--PEEEYHREEIDKLRRDVEQDGLALIVLA 478
YY I G A+ G+ L++ + EE D L ++ E+ +ALI L
Sbjct: 95 VYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEES------DDLIKECERYNIALITLV 148
>2yyd_A Selenide, water dikinase; FULL-length selenophosphate synthetase,
structural genomics, NPPSFA; 1.98A {Aquifex aeolicus}
PDB: 2yye_A* 2zod_A 2zau_A
Length = 345
Score = 28.5 bits (64), Expect = 6.3
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 138 AGCRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNITRPIGSRVPFCA 197
A L G ++ ++ +G+ +I + + G + +T+PIG+ +
Sbjct: 133 AKTVLLGGHTIDDKEPKFGLS--VAGICP-EGKYITQSGAQVGQLLILTKPIGTGILIKG 189
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH;
2'O-methyltransferase, knot, montreal- kingston
bacterial structural genomics initiative, BSGI; 2.5A
{Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Length = 253
Score = 28.4 bits (64), Expect = 7.0
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 439 DARHYGVLLLVDPEEEYHREEIDKLRRDVEQDGLALIVLADW 480
A H G++ V P +Y ++ L + +++ D
Sbjct: 74 GAVHQGIIARVKPGRQYQENDLPDL---IASLDQPFLLILDG 112
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 28.3 bits (64), Expect = 7.9
Identities = 5/34 (14%), Positives = 9/34 (26%), Gaps = 1/34 (2%)
Query: 24 GLKHRPAGHINPASMKQGLMASARRLPGVNMFEQ 57
+ G +P A+ G + E
Sbjct: 137 ASWNPTDGKADPFEATTAFAVKAKEY-GAKLLEY 169
>1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase,
hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP}
SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A*
1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A*
Length = 372
Score = 28.6 bits (63), Expect = 7.9
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 3 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPA 36
+ GTS+ASP+ G+ A L S + G +
Sbjct: 282 QIGGTSLASPIFVGLWARLQSANSN-SLGFPAAS 314
Score = 28.6 bits (63), Expect = 7.9
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 142 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPA 175
+ GTS+ASP+ G+ A L S + G +
Sbjct: 282 QIGGTSLASPIFVGLWARLQSANSN-SLGFPAAS 314
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A
{Entamoeba histolytica}
Length = 327
Score = 28.2 bits (63), Expect = 8.7
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 381 FKDLYQHLRNIGYYIEVLGTPFTCFDARHYGV 412
FK++Y L YYI+ G+
Sbjct: 140 FKEIYNILIKNQYYIK-----DIICSPIDIGI 166
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.429
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,166,161
Number of extensions: 649448
Number of successful extensions: 1837
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1794
Number of HSP's successfully gapped: 135
Length of query: 624
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 525
Effective length of database: 3,937,614
Effective search space: 2067247350
Effective search space used: 2067247350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)