RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1075
(624 letters)
>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1
{Pseudoalteromonas sp. AS-11 [TaxId: 247492]}
Length = 435
Score = 59.3 bits (142), Expect = 6e-10
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 3 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNM-FEQGSGK 61
+GTS+A+P V+GV L+ S + P + + ++ L A+A L + G G
Sbjct: 364 YYNGTSMATPHVSGVATLVWS---YHP--ECSASQVRAALNATADDLSVAGRDNQTGYGM 418
Query: 62 IDLLRAYQILNS 73
I+ + A L+
Sbjct: 419 INAVAAKAYLDE 430
Score = 46.6 bits (109), Expect = 5e-06
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 91 IRGSGVKVAVFDTGLSSGHTGF--NNVAERTDWTNENTLE--DKLGHGTFVAG 139
+ + + D+G H NNV + N + + HGT VAG
Sbjct: 19 SQAGNRTICIIDSGYDRSHNDLNANNVTGTNNSGTGNWYQPGNNNAHGTHVAG 71
Score = 37.3 bits (85), Expect = 0.004
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 142 TLSGTSVASPVVAGVVALLAS 162
+GTS+A+P V+GV L+ S
Sbjct: 364 YYNGTSMATPHVSGVATLVWS 384
>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43,
N-terminal domain {Bacillus sp. KSM-KP43 [TaxId:
109322]}
Length = 318
Score = 58.0 bits (138), Expect = 1e-09
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 1 CRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLP-GVNMFEQGS 59
+ GTS+A+P+VAG VA L P+ +K L+A A + G QG
Sbjct: 248 YAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLGYPNGNQGW 307
Query: 60 GKIDLLRAYQI 70
G++ L ++ +
Sbjct: 308 GRVTLDKSLNV 318
Score = 50.3 bits (118), Expect = 3e-07
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 89 LGIRGSGVKVAVFDTGLSSGHTGF-------NNVAERTDWTNENTLEDKLGHGTFVAGC 140
G+ G G VAV DTGL +G + N D GHGT VAG
Sbjct: 17 YGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGKITALYALGRTNNANDTNGHGTHVAGS 75
Score = 37.9 bits (86), Expect = 0.003
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 4/86 (4%)
Query: 121 WTNENTLEDKLGHGTFVAGCRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQG 180
+ D + + GTS+A+P+VAG VA L P+ +K
Sbjct: 229 SARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAA 288
Query: 181 PVSNITRPIGSRVP---FCAGELNVN 203
+ IG P G + ++
Sbjct: 289 -LIAGAADIGLGYPNGNQGWGRVTLD 313
>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris
[TaxId: 2026]}
Length = 279
Score = 49.7 bits (117), Expect = 4e-07
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 1 CRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNMFEQGSG 60
+LSGTS+A+P VAGV LLAS + ++++ + +A ++ G + G
Sbjct: 218 YASLSGTSMATPHVAGVAGLLAS-------QGRSASNIRAAIENTADKISGTGTY-WAKG 269
Query: 61 KIDLLRAYQ 69
+++ +A Q
Sbjct: 270 RVNAYKAVQ 278
Score = 33.5 bits (75), Expect = 0.064
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 92 RGSGVKVAVFDTGLSSGHTGF-NNVAERTDWTNENTLED 129
GSG K+A+ DTG+ S H V D+ + ++
Sbjct: 28 EGSGAKIAIVDTGVQSNHPDLAGKVVGGWDFVDNDSTPQ 66
Score = 32.8 bits (73), Expect = 0.093
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 139 GCRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNITRPIGSRVPFCAG 198
+LSGTS+A+P VAGV LLAS + ++++ + + G+ + G
Sbjct: 217 TYASLSGTSMATPHVAGVAGLLAS-------QGRSASNIRAAIENTADKISGTGTYWAKG 269
Query: 199 ELNV 202
+N
Sbjct: 270 RVNA 273
>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans
[TaxId: 93466]}
Length = 671
Score = 50.0 bits (118), Expect = 6e-07
Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 10/131 (7%)
Query: 2 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNM-FEQGSG 60
GTS+A+P V GVVA+L + P +++ L +A G + G G
Sbjct: 375 DYYQGTSMAAPHVTGVVAVLLQK-----FPNAKPWQIRKLLENTAFDFNGNGWDHDTGYG 429
Query: 61 KIDLLRAYQ---ILNSYTPQASLSPSSLFLPLGIRGSGVKVAVFDTGLSSGHTGFNNVAE 117
+ L A Q + + + G+ V + + TG + +A
Sbjct: 430 LVKLDAALQGPLPTQGGVEEFQVVVTDAKGNFGVPTVFVSMMRDNGSCYYAKTGPDGIA- 488
Query: 118 RTDWTNENTLE 128
R + T +
Sbjct: 489 RFPHIDSGTYD 499
Score = 38.1 bits (87), Expect = 0.003
Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 7/56 (12%)
Query: 90 GIRGSGVKVAVFDTGLSSGHTGFN-------NVAERTDWTNENTLEDKLGHGTFVA 138
G+ + VAV DTG+ H A + GT VA
Sbjct: 150 EASGTNIIVAVVDTGVDGTHPDLEGQVIAGYRPAFDEELPAGTDSSYGGSAGTHVA 205
Score = 30.4 bits (67), Expect = 0.73
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 139 GCRTLSGTSVASPVVAGVVALLAS 162
GTS+A+P V GVVA+L
Sbjct: 373 TYDYYQGTSMAAPHVTGVVAVLLQ 396
>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]}
Length = 269
Score = 48.8 bits (115), Expect = 7e-07
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 2 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNMFEQGSGK 61
+L+GTS+A+P VAG AL+ P + ++ L +A L N++ GSG
Sbjct: 209 ASLNGTSMATPHVAGAAALVKQ---KNP--SWSNVQIRNHLKNTATSLGSTNLY--GSGL 261
Query: 62 IDLLRAYQ 69
++ A +
Sbjct: 262 VNAEAATR 269
Score = 39.1 bits (90), Expect = 8e-04
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 89 LGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGC 140
G+ GSGVKVAV DTG+S+ H N + E + +D GHGT VAG
Sbjct: 19 RGLTGSGVKVAVLDTGIST-HPDLNIRGGASFVPGEPSTQDGNGHGTHVAGT 69
Score = 32.2 bits (72), Expect = 0.15
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 98 VAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGCRTLSGTSVASPVVAGVV 157
+AV T ++ F+ D G+ +L+GTS+A+P VAG
Sbjct: 169 MAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGS---TYASLNGTSMATPHVAGAA 225
Query: 158 ALLASGLKHRPAGHINPASMKQGPVSNITRPIGSRVPFCAGELNVN 203
AL+ P + ++ + +GS + +G +N
Sbjct: 226 ALVKQ---KNP--SWSNVQIRNHLKNT-ATSLGSTNLYGSGLVNAE 265
>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp.,
AK.1 [TaxId: 1409]}
Length = 280
Score = 48.0 bits (113), Expect = 1e-06
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 1 CRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNMFEQGSG 60
+SGTS+ASP VAG+ ALLAS N ++Q + +A ++ G + G
Sbjct: 219 YAYMSGTSMASPHVAGLAALLAS-------QGRNNIEIRQAIEQTADKISGTGTY-FKYG 270
Query: 61 KIDLLRAYQ 69
+I+ A
Sbjct: 271 RINSYNAVT 279
Score = 37.2 bits (85), Expect = 0.004
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 89 LGIRGSGVKVAVFDTGLSSGHTGFNN--VAERTDWTNENTLEDKLGHGTFVAGC 140
+ SG ++AV DTG+ H + + N+ D HGT VAG
Sbjct: 26 VTKGSSGQEIAVIDTGVDYTHPDLDGKVIKGYDFVDNDYDPMDLNNHGTHVAGI 79
Score = 32.6 bits (73), Expect = 0.11
Identities = 27/105 (25%), Positives = 37/105 (35%), Gaps = 10/105 (9%)
Query: 98 VAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGCRTLSGTSVASPVVAGVV 157
+AV F+N D G +SGTS+ASP VAG+
Sbjct: 180 IAVGAVDQYDRLASFSNYGTWVDVVAPGVDIVSTITGNR---YAYMSGTSMASPHVAGLA 236
Query: 158 ALLASGLKHRPAGHINPASMKQGPVSNITRPIGSRVPFCAGELNV 202
ALLAS N ++Q + G+ F G +N
Sbjct: 237 ALLAS-------QGRNNIEIRQAIEQTADKISGTGTYFKYGRINS 274
>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg
[TaxId: 1423]}
Length = 274
Score = 47.6 bits (112), Expect = 2e-06
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 3 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNMFEQGSGKI 62
TL+GTS+ASP VAG AL+ S +++ + ++ L ++A L + F G G I
Sbjct: 215 TLNGTSMASPHVAGAAALILSK-----HPNLSASQVRNRLSSTATYLG--SSFYYGKGLI 267
Query: 63 DLLRAYQ 69
++ A Q
Sbjct: 268 NVEAAAQ 274
Score = 43.0 bits (100), Expect = 6e-05
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 89 LGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLED 129
G +G+ VKVAV DTG+ + H N V + E D
Sbjct: 19 QGFKGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTD 59
Score = 32.6 bits (73), Expect = 0.13
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 139 GCRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNITRPIGSRVPFCAG 198
TL+GTS+ASP VAG AL+ S +++ + ++ S T +GS + G
Sbjct: 212 TYATLNGTSMASPHVAGAAALILSK-----HPNLSASQVRNRLSSTAT-YLGSSFYYGKG 265
Query: 199 ELNVN 203
+NV
Sbjct: 266 LINVE 270
>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens,
Novo/BPN' [TaxId: 1390]}
Length = 281
Score = 47.6 bits (112), Expect = 2e-06
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 2 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNMFEQGSGK 61
+GTS+ASP VAG AL+ S P + ++ L + +L + F G G
Sbjct: 215 GAYNGTSMASPHVAGAAALILS---KHP--NWTNTQVRSSLENTTTKLG--DSFYYGKGL 267
Query: 62 IDLLRAYQ 69
I++ A Q
Sbjct: 268 INVQAAAQ 275
Score = 44.1 bits (103), Expect = 3e-05
Identities = 42/214 (19%), Positives = 67/214 (31%), Gaps = 9/214 (4%)
Query: 89 LGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNE-NTLEDKLGHGTFVAGCRTLSGTS 147
G GS VKVAV D+G+ S H + +E N +D HGT VAG S
Sbjct: 19 QGYTGSNVKVAVIDSGIDSSHPDLKVAGGASMVPSETNPFQDNNSHGTHVAGTVAALNNS 78
Query: 148 VASPVVAGVVALLA--------SGLKHRPAGHINPASMKQGPVSNITRPIGSRVPFCAGE 199
+ VA +L A SG I A V N++ S
Sbjct: 79 IGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSGSAALKAA 138
Query: 200 LNVNPQSKVFYLDLTECQYMWPYCTQPLYHGAIPIIVNVTILNGMGVVGKILERPKWYPY 259
++ S V + + + Y G P ++ V ++
Sbjct: 139 VDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDV 198
Query: 260 LPHNGEFLEISMTYSDILWPWSGYLAVHISVSAA 293
+ + + + H++ +AA
Sbjct: 199 MAPGVSIQSTLPGNKYGAYNGTSMASPHVAGAAA 232
>d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus
novosp. MN-32, kumamolisin [TaxId: 198803]}
Length = 357
Score = 43.9 bits (102), Expect = 4e-05
Identities = 28/216 (12%), Positives = 45/216 (20%), Gaps = 13/216 (6%)
Query: 87 LPLGIRGSGVKVAVFDTGLSSGHTGF-NNVAERTDWTNENTLEDKLGHGTFVAGCRT-LS 144
P G+ G G +A+ G T A + G G
Sbjct: 17 FPEGLDGQGQCIAIIALGGGYDETSLAQYFASLGVSAPQVVSVSVDGATNQPTGDPNGPD 76
Query: 145 GTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNITRPIGSRVPFCAGELNVNP 204
G VAG +A A + A N +++
Sbjct: 77 GEVELDIEVAGALAPGAKIAVY-------FAPNTDAGFLNAITTAVHDPTHKPSIVSI-- 127
Query: 205 QSKVFYLDLTECQYMWPYCTQPLYHGAIPIIVNVTILNGMGVVGKILERPKWYPYLPHNG 264
S D + L A+ + V + G + + +
Sbjct: 128 -SWGGPEDSWAPASIAAMNRAFLDAAALGVTV-LAAAGDSGSTDGEQDGLYHVDFPAASP 185
Query: 265 EFLEISMTYSDILWPWSGYLAVHISVSAAAAAWQGT 300
L T V + G
Sbjct: 186 YVLACGGTRLVASAGRIERETVWNDGPDGGSTGGGV 221
Score = 37.0 bits (84), Expect = 0.006
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 139 GCRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGP 181
+ GTS +P+ A +VA + L +P G++NP + P
Sbjct: 270 ETTVIGGTSAVAPLFAALVARINQKL-GKPVGYLNPTLYQLPP 311
Score = 36.6 bits (83), Expect = 0.008
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 2 RTLSGTSVASPVVAGVVALLASGLKHRPAGHINPA 36
+ GTS +P+ A +VA + L +P G++NP
Sbjct: 272 TVIGGTSAVAPLFAALVARINQKL-GKPVGYLNPT 305
>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium
album), strain limber [TaxId: 37998]}
Length = 279
Score = 39.3 bits (90), Expect = 8e-04
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 1 CRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNMFEQGSG 60
R++SGTS+A+P VAG+ A L + G AS + + +A + + G
Sbjct: 217 TRSISGTSMATPHVAGLAAYLMT------LGKTTAASACRYIADTANKGD---LSNIPFG 267
Query: 61 KIDLLRAY 68
++LL AY
Sbjct: 268 TVNLL-AY 274
Score = 37.8 bits (86), Expect = 0.003
Identities = 32/208 (15%), Positives = 54/208 (25%), Gaps = 7/208 (3%)
Query: 92 RGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGHGTFVAGCRTLSGTSVASP 151
G G V V DTG+ + H F A+ ++ + GHGT AG VA
Sbjct: 29 AGQGSCVYVIDTGIEASHPEFEGRAQMVKTYYYSSRDGN-GHGTHCAGTVGSRTYGVAKK 87
Query: 152 VVAGVVALLASGLKHRPAGHINPASMKQGPVSNITRPIGSRVPFCAGELNVNPQSKVFYL 211
V +L + + I +N P G G + +
Sbjct: 88 TQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAAR 147
Query: 212 DLTE------CQYMWPYCTQPLYHGAIPIIVNVTILNGMGVVGKILERPKWYPYLPHNGE 265
+ + + P + V + +
Sbjct: 148 LQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRYDRRSSFSNYGSVLDIFGPGTD 207
Query: 266 FLEISMTYSDILWPWSGYLAVHISVSAA 293
L + S + H++ AA
Sbjct: 208 ILSTWIGGSTRSISGTSMATPHVAGLAA 235
Score = 34.3 bits (77), Expect = 0.031
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 139 GCRTLSGTSVASPVVAGVVALLAS 162
R++SGTS+A+P VAG+ A L +
Sbjct: 216 STRSISGTSMATPHVAGLAAYLMT 239
>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 334
Score = 39.0 bits (89), Expect = 0.001
Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 17/87 (19%)
Query: 1 CRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNM------ 54
+ +GTS ++P+ AG++AL K ++ M+ ++ +++
Sbjct: 253 TESHTGTSASAPLAAGIIALTLEANK-----NLTWRDMQHLVVQTSKPAHLNADDWATNG 307
Query: 55 ------FEQGSGKIDLLRAYQILNSYT 75
G G +D + ++T
Sbjct: 308 VGRKVSHSYGYGLLDAGAMVALAQNWT 334
Score = 34.4 bits (77), Expect = 0.036
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 89 LGIRGSGVKVAVFDTGLSSGHTGFNN 114
G G G+ V++ D G+ H
Sbjct: 32 QGFTGHGIVVSILDDGIEKNHPDLAG 57
Score = 28.6 bits (62), Expect = 2.2
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 140 CRTLSGTSVASPVVAGVVALLAS 162
+ +GTS ++P+ AG++AL
Sbjct: 253 TESHTGTSASAPLAAGIIALTLE 275
>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId:
1421]}
Length = 309
Score = 37.2 bits (84), Expect = 0.004
Identities = 25/205 (12%), Positives = 46/205 (22%), Gaps = 4/205 (1%)
Query: 90 GIRGSGVKVAVFDTGLSSGHTGF-NNVAERTDWTNENTLEDKLGHGTFVAGCRTLSGTSV 148
GSG+ +AV DTG+++ H NNV + D+T T + G
Sbjct: 22 TTGGSGINIAVLDTGVNTSHPDLVNNVEQCKDFTGATTPINNSCTDRNGHGTHVAGTALA 81
Query: 149 ASPVVAGVVALLASGLKHRPAGHINPASMKQGPVSNITRPIGSRVPFCAGELNVNPQSKV 208
+ +A + + + G + S
Sbjct: 82 DGGSDQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLG 141
Query: 209 FYLDLTECQYMWPYCTQPLYHGAIPIIVNVTILNGMGVVGKILERPKWYPYLPHNGEFLE 268
+ G + + G +G P
Sbjct: 142 SS---ANNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQN 198
Query: 269 ISMTYSDILWPWSGYLAVHISVSAA 293
+ +D A +
Sbjct: 199 GTYRVADYSSRGYISTAGDYVIQEG 223
Score = 35.2 bits (79), Expect = 0.017
Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 1 CRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNMFEQGSG 60
T+SGTS+A+P V+G+ A + + ++ ++ L A+ + + G
Sbjct: 243 YNTISGTSMATPHVSGLAAKIWAE-----NPSLSNTQLRSNLQERAKSVDIKGGYGAAIG 297
Query: 61 K 61
Sbjct: 298 D 298
Score = 28.7 bits (62), Expect = 2.1
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 139 GCRTLSGTSVASPVVAGVVALLAS 162
G T+SGTS+A+P V+G+ A + +
Sbjct: 242 GYNTISGTSMATPHVSGLAAKIWA 265
>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 339
Score = 36.3 bits (82), Expect = 0.010
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 18/87 (20%)
Query: 1 CRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPASMKQGLMASARRLPGVNM------ 54
+ GTS A+P+ AGV LL P ++ ++ + SA L
Sbjct: 257 SNSHGGTSAAAPLAAGVYTLLLE---ANP--NLTWRDVQYLSILSAVGLEKNADGDWRDS 311
Query: 55 -------FEQGSGKIDLLRAYQILNSY 74
G GKID + ++ ++
Sbjct: 312 AMGKKYSHRYGFGKIDAHKLIEMSKTW 338
Score = 34.4 bits (77), Expect = 0.039
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 90 GIRGSGVKVAVFDTGLSSGHTGFNN 114
I G+GV A+ D GL + +
Sbjct: 42 NITGAGVVAAIVDDGLDYENEDLKD 66
>d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas
sp., sedolisin [TaxId: 306]}
Length = 369
Score = 35.0 bits (79), Expect = 0.025
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 139 GCRTLSGTSVASPVVAGVVALLASGLKHRPAGHINPA 175
+ + GTS+ASP+ G+ A L S + G +
Sbjct: 278 QLQQIGGTSLASPIFVGLWARLQSANSNSL-GFPAAS 313
Score = 35.0 bits (79), Expect = 0.026
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 3 TLSGTSVASPVVAGVVALLASGLKHRPAGHINPA 36
+ GTS+ASP+ G+ A L S + G +
Sbjct: 281 QIGGTSLASPIFVGLWARLQSANSNSL-GFPAAS 313
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 32.9 bits (74), Expect = 0.11
Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 13/114 (11%)
Query: 365 MKNDPLDWNGDHVHTNFKDLYQHLRNIGYY-IEVLGTP--------FTCFDARHYGVLLL 415
+ + + + L + +G Y G P F D G L
Sbjct: 332 LGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLY 391
Query: 416 DLYQHLRNIGYYIEVLGTPFTCFDARHYGVLLLVDPEEEYHREEIDKLRRDVEQ 469
DL + LR G+ + +A V+ ++ + + + L D +
Sbjct: 392 DLSERLRLRGWQVPAFTLGG---EATDIVVMRIM-CRRGFEMDFAELLLEDYKA 441
>d1kzfa_ d.108.1.3 (A:) Acyl-homoserinelactone synthase EsaI
{Pantoea stewartii subsp. stewartii [TaxId: 66271]}
Length = 210
Score = 31.2 bits (70), Expect = 0.28
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 410 YGVLLLDLYQHLRNIGYYIEVLGTPFTCFDARHYGVLLLVDPEEEYHREEIDKLRRDV-E 468
Y ++ + + L G+ I+V+ F R Y + L ++ +L DV
Sbjct: 139 YTIVSRAMLKILTRSGWQIKVIKEAFLTEKERIYLLTLPAGQ------DDKQQLGGDVVS 192
Query: 469 QDGLALIVLADW 480
+ G + + W
Sbjct: 193 RTGCPPVAVTTW 204
>d1yh5a1 d.206.1.1 (A:1-100) Hypothetical protein YggU {Escherichia
coli, o157 [TaxId: 562]}
Length = 100
Score = 27.0 bits (60), Expect = 2.3
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 17/73 (23%)
Query: 284 LAVHISVSAAAAAWQGTVQGHIEVTVESPPLEGEE------------GVRRSTVKLAVKA 331
L ++I A+ + G ++V + +PP++G+ V +S V +
Sbjct: 17 LRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVVIEKGE 76
Query: 332 NIIPTPPRHKRIL 344
RHK+I
Sbjct: 77 L-----GRHKQIK 84
>d1lxna_ d.58.48.1 (A:) Hypothetical protein MTH1187 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 99
Score = 26.6 bits (59), Expect = 3.1
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 5 SGTSVASPVVAGVVALL-ASGLKHR--PAGHINPASMKQGLMASARRLPGVNMFEQGSGK 61
TS+ S VA V L +++ G + A LM + + + + GS +
Sbjct: 14 CSTSL-SSYVAAAVEALKKLNVRYEISGMGTLLEAEDLDELMEAVKAAHEA-VLQAGSDR 71
Query: 62 I 62
+
Sbjct: 72 V 72
>d1r5sa_ f.50.1.1 (A:) Gap junction alpha-1 protein, C-terminal
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 132
Score = 26.3 bits (57), Expect = 5.7
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 75 TPQASLSPSSLFLPLGIRGSGVKVAVFDTGLSSGHTGFNNVAERTDWTNENTLEDKLGH 133
+P A LSP S G K+ D SS +N A +W N + ++++G
Sbjct: 23 SPTAPLSPMS--------PPGYKLVTGDRNNSSCRN-YNKQASEQNWANYSAEQNRMGQ 72
>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2
(P-protein) {Thermus thermophilus [TaxId: 274]}
Length = 471
Score = 27.5 bits (60), Expect = 6.0
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 7/100 (7%)
Query: 365 MKNDPLDWNGDHVHTNFKDLYQHLRNIGYYIEVLGTPFTCFDARH-YGVLLLDLYQHLRN 423
+ + L N + L + L+ GY + G F A+ G LDL + L
Sbjct: 336 LGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPSMHEFVAQPPEGFRALDLAKGLLE 395
Query: 424 IGYYIEVLGTPFTCFDARHYGVLLLVDPEEEYHREEIDKL 463
+G++ + P +A L+V+P E +E ++
Sbjct: 396 LGFHPPTVYFPLIVKEA------LMVEPTETEAKETLEAF 429
>d1sqda1 d.32.1.3 (A:14-180) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 167
Score = 26.7 bits (58), Expect = 6.3
Identities = 21/125 (16%), Positives = 36/125 (28%), Gaps = 4/125 (3%)
Query: 205 QSKVFYLDLTECQYMWPYC--TQPLYHGAIPIIVNVTILNGMGVVGKILERPKWYPYLPH 262
+ ++ T + H + + L + P
Sbjct: 25 NVARRFSWGLGMRFSAKSDLSTGNMVHASYLLTSGDLRFLFTAPYSPSLSAGEIKPTTTA 84
Query: 263 NGEFLEISMTYSDILWPWSGYLAVHISVSAAAAAWQGTVQGHIEVTVESPPLEGEEGVRR 322
+ + S G AV I V A +A+ +V + SPP+ E V
Sbjct: 85 SIPSFDHGSCRSFFSSHGLGVRAVAIEVEDAESAFSISVANGAIPS--SPPIVLNEAVTI 142
Query: 323 STVKL 327
+ VKL
Sbjct: 143 AEVKL 147
>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable
domain, VL-kappa {Mouse (Mus musculus), cluster 4
[TaxId: 10090]}
Length = 107
Score = 25.8 bits (56), Expect = 6.9
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 564 QGKKGVNPNAPMAGWSLRWLSTSWRFTVFVSGTGYTRYMS 603
Q K + + RF+ SG+ Y+ +S
Sbjct: 37 QQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTIS 76
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA
polymerases {Sulfolobus solfataricus [TaxId: 2287]}
Length = 410
Score = 26.7 bits (58), Expect = 9.3
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 449 VDPEEEYHREEIDKLRRDVEQDGLALIVLADWYNTDVMRKI 489
V + +++KL +D + L + N M+ I
Sbjct: 353 VKVDTLISFLDVEKLIEYNFRDAEITLQLTTFNNDLTMKLI 393
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.429
Gapped
Lambda K H
0.267 0.0397 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,476,312
Number of extensions: 122190
Number of successful extensions: 375
Number of sequences better than 10.0: 1
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 49
Length of query: 624
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 533
Effective length of database: 1,158,166
Effective search space: 617302478
Effective search space used: 617302478
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)