Query psy10759
Match_columns 162
No_of_seqs 133 out of 496
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 17:47:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2234|consensus 100.0 1.5E-50 3.3E-55 338.9 14.5 156 5-161 139-294 (345)
2 PF04142 Nuc_sug_transp: Nucle 100.0 2.4E-47 5.1E-52 310.3 14.9 157 4-161 63-225 (244)
3 TIGR00803 nst UDP-galactose tr 99.9 1.7E-27 3.7E-32 189.6 12.7 152 5-161 45-196 (222)
4 PF08449 UAA: UAA transporter 99.1 1.7E-09 3.7E-14 90.0 12.1 156 2-160 108-268 (303)
5 PF06027 DUF914: Eukaryotic pr 98.6 1.3E-06 2.9E-11 74.3 12.4 142 3-153 124-269 (334)
6 KOG1583|consensus 98.1 5.5E-06 1.2E-10 68.8 5.2 94 2-97 109-211 (330)
7 PTZ00343 triose or hexose phos 98.0 0.00026 5.6E-09 60.4 13.3 145 3-159 159-318 (350)
8 TIGR00950 2A78 Carboxylate/Ami 97.9 0.00034 7.4E-09 56.0 13.1 142 3-160 92-235 (260)
9 TIGR00817 tpt Tpt phosphate/ph 97.8 0.00021 4.5E-09 59.1 9.7 87 2-100 109-195 (302)
10 PRK11453 O-acetylserine/cystei 97.7 0.0021 4.5E-08 53.3 15.0 62 4-73 106-167 (299)
11 KOG3912|consensus 97.5 0.00033 7.1E-09 58.7 7.0 86 4-91 132-217 (372)
12 PRK11272 putative DMT superfam 97.3 0.01 2.3E-07 48.9 13.2 77 5-94 116-192 (292)
13 KOG1581|consensus 97.2 0.0074 1.6E-07 50.9 11.3 156 1-160 126-288 (327)
14 PRK11689 aromatic amino acid e 97.1 0.026 5.6E-07 46.7 13.9 71 3-73 110-180 (295)
15 COG0697 RhaT Permeases of the 97.0 0.041 8.9E-07 43.8 13.8 61 5-73 118-178 (292)
16 PLN00411 nodulin MtN21 family 96.9 0.071 1.5E-06 45.8 15.0 94 6-100 132-239 (358)
17 PF03151 TPT: Triose-phosphate 96.2 0.092 2E-06 38.5 10.2 112 50-161 1-125 (153)
18 PRK15430 putative chlorampheni 95.8 0.2 4.4E-06 41.3 11.4 135 3-158 118-254 (296)
19 KOG1582|consensus 95.2 0.13 2.8E-06 43.3 8.2 136 1-157 149-293 (367)
20 TIGR03340 phn_DUF6 phosphonate 95.1 0.13 2.8E-06 42.1 8.1 60 3-72 108-167 (281)
21 KOG1580|consensus 94.5 0.29 6.2E-06 40.5 8.4 95 2-102 129-224 (337)
22 TIGR00688 rarD rarD protein. T 93.9 1.5 3.3E-05 35.1 11.6 55 3-72 115-169 (256)
23 KOG1443|consensus 92.9 0.9 2E-05 38.7 8.7 114 17-146 143-264 (349)
24 KOG1441|consensus 92.4 0.056 1.2E-06 45.9 1.0 83 4-100 129-211 (316)
25 PRK10532 threonine and homoser 90.7 8.4 0.00018 31.6 13.5 131 8-160 117-252 (293)
26 PF06800 Sugar_transport: Suga 89.6 2.9 6.2E-05 34.9 8.5 137 2-145 90-234 (269)
27 PRK10452 multidrug efflux syst 88.9 0.28 6E-06 36.0 1.9 34 2-35 75-108 (120)
28 KOG1444|consensus 86.7 5.5 0.00012 33.9 8.6 116 5-137 124-244 (314)
29 KOG2766|consensus 85.3 0.047 1E-06 45.5 -4.3 91 5-101 125-215 (336)
30 TIGR00776 RhaT RhaT L-rhamnose 83.0 6.5 0.00014 32.5 7.4 88 3-97 105-199 (290)
31 KOG1442|consensus 82.3 9.6 0.00021 32.3 8.0 90 46-137 182-271 (347)
32 TIGR00803 nst UDP-galactose tr 78.6 3.7 8E-05 32.2 4.3 96 2-98 22-128 (222)
33 PF12270 Cyt_c_ox_IV: Cytochro 74.9 21 0.00046 26.8 7.2 69 47-134 34-105 (137)
34 COG2962 RarD Predicted permeas 74.7 1.2 2.7E-05 37.4 0.6 30 2-31 116-145 (293)
35 PRK09541 emrE multidrug efflux 74.2 1.8 3.8E-05 31.2 1.3 32 2-33 75-106 (110)
36 KOG2765|consensus 72.8 17 0.00038 31.9 7.1 64 4-74 205-268 (416)
37 COG4720 Predicted membrane pro 72.3 3.7 8E-05 32.1 2.7 64 78-141 35-98 (177)
38 PRK13499 rhamnose-proton sympo 72.0 65 0.0014 27.8 11.2 91 9-100 132-234 (345)
39 COG2149 Predicted membrane pro 71.7 6.3 0.00014 28.9 3.6 57 11-73 27-83 (120)
40 TIGR00997 ispZ intracellular s 66.8 49 0.0011 25.8 8.0 26 5-30 42-68 (178)
41 PF06379 RhaT: L-rhamnose-prot 61.0 43 0.00092 29.0 7.2 91 44-138 134-231 (344)
42 PF00892 EamA: EamA-like trans 57.6 56 0.0012 22.0 7.2 96 60-160 2-97 (126)
43 KOG4314|consensus 55.3 90 0.002 25.4 7.7 60 5-73 100-159 (290)
44 PF12537 DUF3735: Protein of u 53.6 11 0.00025 24.8 2.0 22 48-69 12-33 (72)
45 PLN00411 nodulin MtN21 family 48.3 9.3 0.0002 32.8 1.2 33 2-34 300-332 (358)
46 PF08449 UAA: UAA transporter 44.8 1.7E+02 0.0038 23.9 10.1 93 64-161 15-108 (303)
47 PRK03113 putative disulfide ox 44.2 1.3E+02 0.0029 22.4 8.5 44 51-95 11-55 (139)
48 PF07155 ECF-ribofla_trS: ECF- 40.6 85 0.0018 23.4 5.4 31 111-141 66-96 (169)
49 PRK13499 rhamnose-proton sympo 40.4 2.2E+02 0.0048 24.6 8.4 90 47-136 137-230 (345)
50 PRK00259 intracellular septati 36.8 2E+02 0.0044 22.4 8.1 24 5-28 42-66 (179)
51 PF05653 Mg_trans_NIPA: Magnes 35.0 1E+02 0.0022 25.8 5.4 31 44-74 2-32 (300)
52 TIGR03113 exosortase_2 exosort 34.7 1.4E+02 0.0031 24.7 6.2 58 80-140 199-266 (268)
53 COG5605 Predicted small integr 33.4 34 0.00074 24.2 1.9 29 113-141 44-72 (115)
54 PF13124 DUF3963: Protein of u 33.3 82 0.0018 18.3 3.2 22 66-90 7-28 (40)
55 PF03812 KdgT: 2-keto-3-deoxyg 33.0 1.6E+02 0.0034 25.3 6.2 45 108-152 101-145 (314)
56 COG5070 VRG4 Nucleotide-sugar 32.1 2.3E+02 0.0049 23.6 6.7 110 5-125 115-230 (309)
57 TIGR02106 cyd_oper_ybgT cyd op 30.6 83 0.0018 17.5 2.8 19 52-70 8-26 (30)
58 PRK10144 formate-dependent nit 30.4 80 0.0017 23.4 3.6 36 104-139 88-124 (126)
59 PF02990 EMP70: Endomembrane p 29.1 2.4E+02 0.0051 25.5 7.1 43 52-95 301-343 (521)
60 PRK09584 tppB putative tripept 27.6 4.3E+02 0.0093 23.3 9.3 23 6-28 343-365 (500)
61 TIGR02896 spore_III_AF stage I 26.2 1.1E+02 0.0023 21.9 3.5 49 80-133 5-53 (106)
62 PF02592 DUF165: Uncharacteriz 25.9 1.3E+02 0.0027 22.2 4.1 42 51-92 71-113 (145)
63 PF08173 YbgT_YccB: Membrane b 25.1 1.1E+02 0.0024 16.7 2.6 19 52-70 8-26 (28)
64 PLN02680 carbon-monoxide oxyge 24.9 3.8E+02 0.0083 21.8 8.2 56 13-70 86-143 (232)
65 PF02656 DUF202: Domain of unk 24.9 1.8E+02 0.0039 18.5 4.3 48 16-64 16-63 (73)
66 PF05653 Mg_trans_NIPA: Magnes 24.6 31 0.00068 28.9 0.6 27 3-29 95-121 (300)
67 KOG1580|consensus 23.8 62 0.0014 27.0 2.2 25 5-29 288-312 (337)
68 COG4711 Predicted membrane pro 22.9 3E+02 0.0065 22.2 5.8 64 8-73 119-185 (217)
69 TIGR03147 cyt_nit_nrfF cytochr 22.9 1.3E+02 0.0028 22.2 3.6 36 104-139 88-124 (126)
70 PF03253 UT: Urea transporter; 22.4 1.5E+02 0.0033 24.9 4.4 27 117-146 84-110 (301)
71 TIGR00077 lspA lipoprotein sig 22.4 2.2E+02 0.0047 21.7 4.9 51 109-161 59-111 (166)
72 PF03845 Spore_permease: Spore 22.2 3E+02 0.0066 22.6 6.1 67 9-84 1-68 (320)
73 PRK10334 mechanosensitive chan 22.1 4.6E+02 0.01 21.7 10.7 93 48-156 32-126 (286)
74 PF07836 DmpG_comm: DmpG-like 21.3 49 0.0011 21.8 0.9 17 57-73 8-24 (66)
75 PF12075 KN_motif: KN motif; 21.2 32 0.0007 20.3 0.0 12 137-148 16-27 (39)
76 TIGR00793 kdgT 2-keto-3-deoxyg 20.9 1.9E+02 0.0042 24.7 4.6 40 108-147 101-140 (314)
77 PF08360 TetR_C_5: QacR-like p 20.7 3.4E+02 0.0074 19.7 9.3 109 46-159 21-129 (131)
78 PRK01844 hypothetical protein; 20.5 2.2E+02 0.0048 19.0 3.9 26 48-73 4-34 (72)
79 PF14146 DUF4305: Domain of un 20.4 94 0.002 18.1 1.9 15 115-129 15-29 (38)
No 1
>KOG2234|consensus
Probab=100.00 E-value=1.5e-50 Score=338.86 Aligned_cols=156 Identities=37% Similarity=0.597 Sum_probs=146.9
Q ss_pred ccCCccchhHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhccCCCCchHHHH
Q psy10759 5 TEWGSKSLKKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYKADGDDTLLIKN 84 (162)
Q Consensus 5 ~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~~~~~s~~~~N 84 (162)
+|+||+|++||.|+++|+.|+.++|.+..++.++..+.+.++++.|+.+++.+|++||||||||||++| +++.|+|+||
T Consensus 139 ~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK-~s~~s~wi~N 217 (345)
T KOG2234|consen 139 ILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILK-GSNVSLWIRN 217 (345)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHh-cCCchHHHHH
Confidence 689999999999999999999999976555443344667889999999999999999999999999999 8889999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccccCccccCchhHHHHHHHHhhhhHHHhhHHhhcchhHHHHHHHHHHHhhhhhc
Q psy10759 85 LQLSLLSIPISMINVLLQDSDTVSQHGLFFGYDGLVLTDVLFNALGGLIISLVLKHHDNITKIFSTSVSIVVTFVLK 161 (162)
Q Consensus 85 ~qL~~~gi~~~~~~~~~~dg~~~~~~gff~G~~~~~~~vi~~~A~gGl~va~v~KyadnI~K~fa~s~sivlt~~~s 161 (162)
+|||++|++++++.++..|++++...|||+|||+++|++|++||+|||++|+|+||||||+|+|++++||++|+++|
T Consensus 218 iqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S 294 (345)
T KOG2234|consen 218 IQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVAS 294 (345)
T ss_pred HHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999987
No 2
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=100.00 E-value=2.4e-47 Score=310.28 Aligned_cols=157 Identities=38% Similarity=0.575 Sum_probs=144.6
Q ss_pred CccCCccchhHHHHHHHHHhhhhheeccCCCCcccc------ccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhccCCC
Q psy10759 4 NTEWGSKSLKKVFSLGVLLFGIVLIQIDESASESIS------RKSDNGNQLIGFGQVILASVSSGFTSVYLERIYKADGD 77 (162)
Q Consensus 4 ~~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~~------~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~~~~ 77 (162)
.+||||+|++||+|+++|++|++++|.++..+++.+ ++.++.++..|+++++++|++||+||||+||++| +++
T Consensus 63 ~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK-~~~ 141 (244)
T PF04142_consen 63 LLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLK-RSN 141 (244)
T ss_pred HHHHcccchhhHHHHHHHHHHHheeecCCccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhc-ccc
Confidence 479999999999999999999999999877653111 1223567899999999999999999999999999 677
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhcCCccccccCccccCchhHHHHHHHHhhhhHHHhhHHhhcchhHHHHHHHHHHHhh
Q psy10759 78 DTLLIKNLQLSLLSIPISMINVLLQDSDTVSQHGLFFGYDGLVLTDVLFNALGGLIISLVLKHHDNITKIFSTSVSIVVT 157 (162)
Q Consensus 78 ~s~~~~N~qL~~~gi~~~~~~~~~~dg~~~~~~gff~G~~~~~~~vi~~~A~gGl~va~v~KyadnI~K~fa~s~sivlt 157 (162)
.|+|+||+|||++|++++++...+.|++++.+.|||+|||+++|++|++||+|||+|++|+||+|||+|+||+++||++|
T Consensus 142 ~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t 221 (244)
T PF04142_consen 142 VSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLT 221 (244)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhc
Q psy10759 158 FVLK 161 (162)
Q Consensus 158 ~~~s 161 (162)
+++|
T Consensus 222 ~~~s 225 (244)
T PF04142_consen 222 AVLS 225 (244)
T ss_pred HHHH
Confidence 9886
No 3
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.95 E-value=1.7e-27 Score=189.61 Aligned_cols=152 Identities=35% Similarity=0.526 Sum_probs=136.9
Q ss_pred ccCCccchhHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhccCCCCchHHHH
Q psy10759 5 TEWGSKSLKKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYKADGDDTLLIKN 84 (162)
Q Consensus 5 ~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~~~~~s~~~~N 84 (162)
.++|++|..||.++.+|..|+.++|.++..+ .+....+...|+.+++.++++|+++++|+|+.+| +++.++|.||
T Consensus 45 ~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~----~~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k-~~~~~~~~~~ 119 (222)
T TIGR00803 45 SLVASLGDDQWFSLKLLKLGVAIVQMVQSSA----KTLMFGNPVVGLSAVLSALLSSGFAGVYFEKILK-DGDTMFWSRN 119 (222)
T ss_pred HHHhHhhHHHHHHHHHHHHhHeeeecCCCCc----cccccccHHHHHHHHHHHHHHHhhhHHHHHHccc-CCCCchHHHH
Confidence 3678999999999999999999999776532 2223347889999999999999999999999999 6778899999
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccccCccccCchhHHHHHHHHhhhhHHHhhHHhhcchhHHHHHHHHHHHhhhhhc
Q psy10759 85 LQLSLLSIPISMINVLLQDSDTVSQHGLFFGYDGLVLTDVLFNALGGLIISLVLKHHDNITKIFSTSVSIVVTFVLK 161 (162)
Q Consensus 85 ~qL~~~gi~~~~~~~~~~dg~~~~~~gff~G~~~~~~~vi~~~A~gGl~va~v~KyadnI~K~fa~s~sivlt~~~s 161 (162)
++|++++++.+.......|++...+.+||+||+..+|.+++++|+||+++++++||+|+++|+++++++.++|+++|
T Consensus 120 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls 196 (222)
T TIGR00803 120 LQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLAS 196 (222)
T ss_pred HHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888899999999999999999999999999999999999999999999999999886
No 4
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.08 E-value=1.7e-09 Score=89.99 Aligned_cols=156 Identities=22% Similarity=0.295 Sum_probs=106.0
Q ss_pred CCCccCCccchhHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhccCCCCchH
Q psy10759 2 GSNTEWGSKSLKKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYKADGDDTLL 81 (162)
Q Consensus 2 g~~~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~~~~~s~~ 81 (162)
|..++|||++++||++.+++++|+++..+++..+++.+ +....+...|+.+++.+.++.|+.++|.||++| +.+.+.|
T Consensus 108 ~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~-~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~-~~~~~~~ 185 (303)
T PF08449_consen 108 GVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSS-NSSSFSSALGIILLLLSLLLDAFTGVYQEKLFK-KYGKSPW 185 (303)
T ss_pred HHHhcCccccHHHHHHHHHHHhhHheeeeccccccccc-ccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HhCCcHH
Confidence 56789999999999999999999999998776543222 222223345999999999999999999999999 6666776
Q ss_pred HHHHHHHHHHHHHHHHHHHh-cCCccccccCccccCchhHHHH----HHHHhhhhHHHhhHHhhcchhHHHHHHHHHHHh
Q psy10759 82 IKNLQLSLLSIPISMINVLL-QDSDTVSQHGLFFGYDGLVLTD----VLFNALGGLIISLVLKHHDNITKIFSTSVSIVV 156 (162)
Q Consensus 82 ~~N~qL~~~gi~~~~~~~~~-~dg~~~~~~gff~G~~~~~~~v----i~~~A~gGl~va~v~KyadnI~K~fa~s~sivl 156 (162)
..-....+++.++.++..+. +.++-.....|... +|.++.. .+.+++|=..+...+|+.+...-+..+.+--.+
T Consensus 186 ~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~-~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~ 264 (303)
T PF08449_consen 186 ELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISA-HPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFL 264 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHH
Confidence 66666788998888776555 11221112222222 2333333 355555666677778888877666555544444
Q ss_pred hhhh
Q psy10759 157 TFVL 160 (162)
Q Consensus 157 t~~~ 160 (162)
|.++
T Consensus 265 sill 268 (303)
T PF08449_consen 265 SILL 268 (303)
T ss_pred HHHH
Confidence 4443
No 5
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.56 E-value=1.3e-06 Score=74.33 Aligned_cols=142 Identities=18% Similarity=0.156 Sum_probs=99.4
Q ss_pred CCccCCccchhHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhccCCCCchHH
Q psy10759 3 SNTEWGSKSLKKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYKADGDDTLLI 82 (162)
Q Consensus 3 ~~~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~~~~~s~~~ 82 (162)
..+||+|++..||++.++-+.|+.++-..+..+++ ++....++.+|-+.+++++++-|+..|+.|+..| +. +...
T Consensus 124 ~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~--~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~-~~--~~~~ 198 (334)
T PF06027_consen 124 FIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGS--DSSSGSNPILGDLLALLGAILYAVSNVLEEKLVK-KA--PRVE 198 (334)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhhhheeeecccccc--cCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcc-cC--CHHH
Confidence 35799999999999999999999998877655421 2234568999999999999999999999999999 33 4555
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccCccccCchhHHHHHHHHhhhh----HHHhhHHhhcchhHHHHHHHHH
Q psy10759 83 KNLQLSLLSIPISMINVLLQDSDTVSQHGLFFGYDGLVLTDVLFNALGG----LIISLVLKHHDNITKIFSTSVS 153 (162)
Q Consensus 83 ~N~qL~~~gi~~~~~~~~~~dg~~~~~~gff~G~~~~~~~vi~~~A~gG----l~va~v~KyadnI~K~fa~s~s 153 (162)
-.-++.+||.+++.+....-+.+++.+ ++ |++.++...+..++.= .++..++|+++...=+.....+
T Consensus 199 ~lg~~Glfg~ii~~iq~~ile~~~i~~---~~-w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTs 269 (334)
T PF06027_consen 199 FLGMLGLFGFIISGIQLAILERSGIES---IH-WTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTS 269 (334)
T ss_pred HHHHHHHHHHHHHHHHHHheehhhhhc---cC-CChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHh
Confidence 668889999988887766555544432 12 4444444333322221 2457788888876544443333
No 6
>KOG1583|consensus
Probab=98.08 E-value=5.5e-06 Score=68.81 Aligned_cols=94 Identities=22% Similarity=0.259 Sum_probs=72.6
Q ss_pred CCCccCCccchhHHHHHHHHHhhhhheeccCCCCccc-------c-ccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhc
Q psy10759 2 GSNTEWGSKSLKKVFSLGVLLFGIVLIQIDESASESI-------S-RKSDNGNQLIGFGQVILASVSSGFTSVYLERIYK 73 (162)
Q Consensus 2 g~~~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~-------~-~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK 73 (162)
|--.+|||+|.+|..|.+++++|+.+..+.+.++... . ...+.....+|+.+...+-++|+..|+|.|..+|
T Consensus 109 g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~ 188 (330)
T KOG1583|consen 109 GWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQ 188 (330)
T ss_pred HHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346899999999999999999999998866554211 1 1123345679999999999999999999999999
Q ss_pred cCCCCchHHHHHHH-HHHHHHHHHH
Q psy10759 74 ADGDDTLLIKNLQL-SLLSIPISMI 97 (162)
Q Consensus 74 ~~~~~s~~~~N~qL-~~~gi~~~~~ 97 (162)
+...-|-++++. .+.++|+-+.
T Consensus 189 --kyGKh~~EalFytH~LsLP~Flf 211 (330)
T KOG1583|consen 189 --KYGKHWKEALFYTHFLSLPLFLF 211 (330)
T ss_pred --HhcCChHHHHHHHHHhccchHHH
Confidence 346678888885 6677766543
No 7
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.95 E-value=0.00026 Score=60.38 Aligned_cols=145 Identities=17% Similarity=0.231 Sum_probs=89.5
Q ss_pred CCccCCccchhHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhccCCC---Cc
Q psy10759 3 SNTEWGSKSLKKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYKADGD---DT 79 (162)
Q Consensus 3 ~~~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~~~~---~s 79 (162)
..++|+|+|++||.++++.++|+.+.-.++. .....|++..++++++.++-.++.+|.+++ .+ .+
T Consensus 159 ~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~-----------~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~-~~~~~~~ 226 (350)
T PTZ00343 159 ILFLKQFLNLYAYLSLIPIVGGVALASVKEL-----------HFTWLAFWCAMLSNLGSSLRSIFAKKTMKN-KSEIGEN 226 (350)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHheecccc-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccccccc
Confidence 4578999999999999999999999764221 123679999999999999999999999983 32 13
Q ss_pred hHHHHHHH--HHHHHHHHHHHHHhcCCccccc-----cCccccCch-hHHHHHHHHhhhhHHHhh----HHhhcchhHHH
Q psy10759 80 LLIKNLQL--SLLSIPISMINVLLQDSDTVSQ-----HGLFFGYDG-LVLTDVLFNALGGLIISL----VLKHHDNITKI 147 (162)
Q Consensus 80 ~~~~N~qL--~~~gi~~~~~~~~~~dg~~~~~-----~gff~G~~~-~~~~vi~~~A~gGl~va~----v~KyadnI~K~ 147 (162)
....|+.. ..+|.++.+......++..... ..-+..+.+ ..+..++...+...+... .+|+.+.+.-+
T Consensus 227 ~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~s 306 (350)
T PTZ00343 227 LTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHA 306 (350)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 44455554 4456555554444333321000 011222222 233345555666666553 77777766655
Q ss_pred HHHHHHHHhhhh
Q psy10759 148 FSTSVSIVVTFV 159 (162)
Q Consensus 148 fa~s~sivlt~~ 159 (162)
.+..+-=+++.+
T Consensus 307 v~~~lk~V~~iv 318 (350)
T PTZ00343 307 VANTLKRVVIIV 318 (350)
T ss_pred HHHHHHHHHHhh
Confidence 555544444433
No 8
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.94 E-value=0.00034 Score=55.97 Aligned_cols=142 Identities=15% Similarity=0.060 Sum_probs=87.6
Q ss_pred CCccCCccchhHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhccCCCCchHH
Q psy10759 3 SNTEWGSKSLKKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYKADGDDTLLI 82 (162)
Q Consensus 3 ~~~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~~~~~s~~~ 82 (162)
..++|+|++++||.++.+-++|+.+...++. ..+...|....+.++++=+...++..|..+ +.+.+...
T Consensus 92 ~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~----------~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~-~~~~~~~~ 160 (260)
T TIGR00950 92 DLMGKERPRKLVLLAAVLGLAGAVLLLSDGN----------LSINPAGLLLGLGSGISFALGTVLYKRLVK-KEGPELLQ 160 (260)
T ss_pred HHHccCCCcHHHHHHHHHHHHhHHhhccCCc----------ccccHHHHHHHHHHHHHHHHHHHHHhHHhh-cCCchHHH
Confidence 4568999999999999999999998764321 113467999999999999999999888776 44443333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccCccccCch--hHHHHHHHHhhhhHHHhhHHhhcchhHHHHHHHHHHHhhhhh
Q psy10759 83 KNLQLSLLSIPISMINVLLQDSDTVSQHGLFFGYDG--LVLTDVLFNALGGLIISLVLKHHDNITKIFSTSVSIVVTFVL 160 (162)
Q Consensus 83 ~N~qL~~~gi~~~~~~~~~~dg~~~~~~gff~G~~~--~~~~vi~~~A~gGl~va~v~KyadnI~K~fa~s~sivlt~~~ 160 (162)
-|...+..+.++.+...+..+.+. . .+..++ ..+.-++...++-.+....+|+.+.-.=........+.+.++
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll 235 (260)
T TIGR00950 161 FTGWVLLLGALLLLPFAWFLGPNP----Q-ALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLL 235 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC----C-cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 343334455444444333332211 1 111111 222333344555566677788888766555555555555544
No 9
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.79 E-value=0.00021 Score=59.10 Aligned_cols=87 Identities=10% Similarity=-0.006 Sum_probs=60.5
Q ss_pred CCCccCCccchhHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhccCCCCchH
Q psy10759 2 GSNTEWGSKSLKKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYKADGDDTLL 81 (162)
Q Consensus 2 g~~~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~~~~~s~~ 81 (162)
+..++|||++++||.++++-++|+.+.-.++ ......|.+.++.++++-++..++.+|..+ +.+.+.+
T Consensus 109 ~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~-----------~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~-~~~~~~~ 176 (302)
T TIGR00817 109 SAFFLGQEFPSTLWLSLLPIVGGVALASDTE-----------LSFNWAGFLSAMISNITFVSRNIFSKKAMT-IKSLDKT 176 (302)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc-----------ccccHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCcc
Confidence 3457899999999999999999998753111 112367999999999999999999999887 3333434
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy10759 82 IKNLQLSLLSIPISMINVL 100 (162)
Q Consensus 82 ~~N~qL~~~gi~~~~~~~~ 100 (162)
.-+......+.++.+....
T Consensus 177 ~~~~~~~~~~~~~l~p~~~ 195 (302)
T TIGR00817 177 NLYAYISIMSLFLLSPPAF 195 (302)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 3344444445444443333
No 10
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.74 E-value=0.0021 Score=53.27 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=49.9
Q ss_pred CccCCccchhHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhc
Q psy10759 4 NTEWGSKSLKKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYK 73 (162)
Q Consensus 4 ~~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK 73 (162)
.++|+|++++||+++++-++|+.+.-.++.+ .......|.+..+.++++-+...++.+|..|
T Consensus 106 ~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~--------~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~ 167 (299)
T PRK11453 106 FTFGERLQGKQLAGIALAIFGVLVLIEDSLN--------GQHVAMLGFMLTLAAAFSWACGNIFNKKIMS 167 (299)
T ss_pred HHhcCcCcHHHHHHHHHHHHhHHHhccccCC--------CcchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999987643221 1112357999999999999999999999776
No 11
>KOG3912|consensus
Probab=97.51 E-value=0.00033 Score=58.68 Aligned_cols=86 Identities=13% Similarity=0.051 Sum_probs=63.7
Q ss_pred CccCCccchhHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhccCCCCchHHH
Q psy10759 4 NTEWGSKSLKKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYKADGDDTLLIK 83 (162)
Q Consensus 4 ~~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~~~~~s~~~~ 83 (162)
++|+|++..+||+++...++|++.+-..+.... +++-.+..+...|.++++.+-++=+.-=||-||.+| +.+.+.-.-
T Consensus 132 ~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~-~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~-~~nV~pl~a 209 (372)
T KOG3912|consen 132 MFLNRTITGRQWLGILFVSLGLVIVGSLDVHLV-TDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLK-KSNVAPLQA 209 (372)
T ss_pred HHHhcccchhhHHHHHHHHhhhheeeeeecccc-cCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhh-hccCCHHHH
Confidence 589999999999999999999999876544321 112223357889999999999999999999999999 565543322
Q ss_pred HHHHHHHH
Q psy10759 84 NLQLSLLS 91 (162)
Q Consensus 84 N~qL~~~g 91 (162)
--+=..||
T Consensus 210 vg~eGlfG 217 (372)
T KOG3912|consen 210 VGWEGLFG 217 (372)
T ss_pred hhhhhhHH
Confidence 22224455
No 12
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.26 E-value=0.01 Score=48.91 Aligned_cols=77 Identities=17% Similarity=0.139 Sum_probs=53.9
Q ss_pred ccCCccchhHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhccCCCCchHHHH
Q psy10759 5 TEWGSKSLKKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYKADGDDTLLIKN 84 (162)
Q Consensus 5 ~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~~~~~s~~~~N 84 (162)
++|+|++++||.++++-++|+.+...++.. +....|.+..+.++++=++..++.+|.-+ . .+.....
T Consensus 116 ~~~e~~~~~~~~~~~la~~Gv~ll~~~~~~----------~~~~~G~l~~l~a~~~~a~~~~~~~~~~~-~--~~~~~~~ 182 (292)
T PRK11272 116 LFGIRTRKLEWLGIAIGLAGIVLLNSGGNL----------SGNPWGAILILIASASWAFGSVWSSRLPL-P--VGMMAGA 182 (292)
T ss_pred HhcccCchhHHHHHHHHHHhHHHHhcCccc----------ccchHHHHHHHHHHHHHHHHHHHHHhcCC-C--cchHHHH
Confidence 469999999999999999999987543211 12357999999999998999999888644 2 2344434
Q ss_pred HHHHHHHHHH
Q psy10759 85 LQLSLLSIPI 94 (162)
Q Consensus 85 ~qL~~~gi~~ 94 (162)
.|+-.-++..
T Consensus 183 ~~~~~~~~~~ 192 (292)
T PRK11272 183 AEMLAAGVVL 192 (292)
T ss_pred HHHHHHHHHH
Confidence 4444434433
No 13
>KOG1581|consensus
Probab=97.18 E-value=0.0074 Score=50.93 Aligned_cols=156 Identities=18% Similarity=0.169 Sum_probs=112.4
Q ss_pred CCCCccCCccchhHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhccCCCCch
Q psy10759 1 MGSNTEWGSKSLKKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYKADGDDTL 80 (162)
Q Consensus 1 ~g~~~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~~~~~s~ 80 (162)
||-.+-+||++....++.++..+|+.+..+.+.+++. ....+.+.+.|+.++...-+.=||....-++++| +.+.+-
T Consensus 126 mg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~--~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~-~~k~s~ 202 (327)
T KOG1581|consen 126 MGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSS--SKSGRENSPIGILLLFGYLLFDGFTNATQDSLFK-KYKVSS 202 (327)
T ss_pred HHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCc--cccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhc-cCCccH
Confidence 4666789999999999999999999999887666522 2233457899999999999999999999999999 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccCcccc---CchhHHHHHHHHhhhhHHHhhHHhhcchhHHHHH----HHHH
Q psy10759 81 LIKNLQLSLLSIPISMINVLLQDSDTVSQHGLFFG---YDGLVLTDVLFNALGGLIISLVLKHHDNITKIFS----TSVS 153 (162)
Q Consensus 81 ~~~N~qL~~~gi~~~~~~~~~~dg~~~~~~gff~G---~~~~~~~vi~~~A~gGl~va~v~KyadnI~K~fa----~s~s 153 (162)
|..-.-+-+|+.+.|+...+.++ .-.+.-.|-.- .-+-..+.-++.|+|=+.+-..+..-++++=+-. ..+|
T Consensus 203 ~~mM~~vNLf~~i~~~~~li~qg-~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~s 281 (327)
T KOG1581|consen 203 LHMMFGVNLFSAILNGTYLILQG-HLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVS 281 (327)
T ss_pred hHHHHHHHHHHHHHHHHhhhcCC-CCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHH
Confidence 99999999999999998855443 21111112111 1122444556677777778877777777762222 2356
Q ss_pred HHhhhhh
Q psy10759 154 IVVTFVL 160 (162)
Q Consensus 154 ivlt~~~ 160 (162)
|+++++.
T Consensus 282 i~lS~i~ 288 (327)
T KOG1581|consen 282 IMLSCIV 288 (327)
T ss_pred HHHHHHH
Confidence 6666654
No 14
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.09 E-value=0.026 Score=46.67 Aligned_cols=71 Identities=6% Similarity=-0.012 Sum_probs=51.5
Q ss_pred CCccCCccchhHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhc
Q psy10759 3 SNTEWGSKSLKKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYK 73 (162)
Q Consensus 3 ~~~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK 73 (162)
..++|+|++++||.++++=++|+.+.-.++...+..+......+...|..+.+.++++-++..++.+|..+
T Consensus 110 ~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~ 180 (295)
T PRK11689 110 VLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYAR 180 (295)
T ss_pred HHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34689999999999999999999887654321110000001123456999999999999999999999765
No 15
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.98 E-value=0.041 Score=43.84 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=51.9
Q ss_pred ccCCccchhHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhc
Q psy10759 5 TEWGSKSLKKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYK 73 (162)
Q Consensus 5 ~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK 73 (162)
++++|.+++||.++++.+.|+.++..++.... .. ...|....+.+++.-++..++.++..|
T Consensus 118 ~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~-------~~-~~~g~~~~l~a~~~~a~~~~~~~~~~~ 178 (292)
T COG0697 118 LLGERLSLLQILGILLALAGVLLILLGGGGGG-------IL-SLLGLLLALAAALLWALYTALVKRLSR 178 (292)
T ss_pred HccCCCcHHHHHHHHHHHHhHHheecCCCcch-------hH-HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45999999999999999999999987766431 01 689999999999999999999999884
No 16
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=96.87 E-value=0.071 Score=45.84 Aligned_cols=94 Identities=19% Similarity=0.178 Sum_probs=58.4
Q ss_pred cCCccchhHHHHHHHHHhhhhheeccCCCC--c------------cccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhh
Q psy10759 6 EWGSKSLKKVFSLGVLLFGIVLIQIDESAS--E------------SISRKSDNGNQLIGFGQVILASVSSGFTSVYLERI 71 (162)
Q Consensus 6 L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~--~------------~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~ 71 (162)
+++|++++||+++++=++|+.+.-..+... . +........+...|....+.++++=++..++..+.
T Consensus 132 ~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~ 211 (358)
T PLN00411 132 FKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHI 211 (358)
T ss_pred hcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999765422110 0 00001112345679999999999999999999888
Q ss_pred hccCCCCchHHHHHHHHHHHHHHHHHHHH
Q psy10759 72 YKADGDDTLLIKNLQLSLLSIPISMINVL 100 (162)
Q Consensus 72 lK~~~~~s~~~~N~qL~~~gi~~~~~~~~ 100 (162)
.+ +.+......-.+..+.++++......
T Consensus 212 ~~-~~~~~~~~t~~~~~~~~~~~~~~~l~ 239 (358)
T PLN00411 212 MS-EYPAAFTVSFLYTVCVSIVTSMIGLV 239 (358)
T ss_pred HH-HcCcHhHHHHHHHHHHHHHHHHHHHH
Confidence 77 44332222222333344554444443
No 17
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=96.21 E-value=0.092 Score=38.54 Aligned_cols=112 Identities=18% Similarity=0.173 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHhhhccC----CCCchHHHHHHHHHHHHHHHHHHHHhcCCcccccc--Cccc-cC--chhH
Q psy10759 50 GFGQVILASVSSGFTSVYLERIYKAD----GDDTLLIKNLQLSLLSIPISMINVLLQDSDTVSQH--GLFF-GY--DGLV 120 (162)
Q Consensus 50 G~~~vl~~~~~Sg~AgVy~E~~lK~~----~~~s~~~~N~qL~~~gi~~~~~~~~~~dg~~~~~~--gff~-G~--~~~~ 120 (162)
|+..++.+++++++-.++.|+.+|+. .+.+-+..-...+..+.++.+...++.|+.+..+. ..++ .. ++..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 67889999999999999999999942 23333333333455666666666666555331111 1111 11 2344
Q ss_pred HHHHHHHhhhhHH----HhhHHhhcchhHHHHHHHHHHHhhhhhc
Q psy10759 121 LTDVLFNALGGLI----ISLVLKHHDNITKIFSTSVSIVVTFVLK 161 (162)
Q Consensus 121 ~~vi~~~A~gGl~----va~v~KyadnI~K~fa~s~sivlt~~~s 161 (162)
+..++..++-+.. .-.++|+...+.-..+..+-.+++.++|
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s 125 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLS 125 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHH
Confidence 5555554544433 4567888888877777666666655543
No 18
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=95.78 E-value=0.2 Score=41.32 Aligned_cols=135 Identities=10% Similarity=-0.019 Sum_probs=70.2
Q ss_pred CCccCCccchhHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhccCCCCchHH
Q psy10759 3 SNTEWGSKSLKKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYKADGDDTLLI 82 (162)
Q Consensus 3 ~~~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~~~~~s~~~ 82 (162)
..++|+|++++||.++++=++|+.+.-.+.. + .. ...+.++++-++..++.+|..+ +...+...
T Consensus 118 ~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~-~----------~~----~~~l~aa~~~a~~~i~~r~~~~-~~~~~~~~ 181 (296)
T PRK15430 118 MIFLGERFRRMQWLAVILAICGVLVQLWTFG-S----------LP----IIALGLAFSFAFYGLVRKKIAV-EAQTGMLI 181 (296)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC-C----------cc----HHHHHHHHHHHHHHHHHHhcCC-CCchhHHH
Confidence 4568999999999999999999998642211 0 11 2345566677777777777543 22234455
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccCccccCchhHH--HHHHHHhhhhHHHhhHHhhcchhHHHHHHHHHHHhhh
Q psy10759 83 KNLQLSLLSIPISMINVLLQDSDTVSQHGLFFGYDGLVL--TDVLFNALGGLIISLVLKHHDNITKIFSTSVSIVVTF 158 (162)
Q Consensus 83 ~N~qL~~~gi~~~~~~~~~~dg~~~~~~gff~G~~~~~~--~vi~~~A~gGl~va~v~KyadnI~K~fa~s~sivlt~ 158 (162)
.+..+..++.+..+. +..+... .. ....+.++.+ ...+..+++=++....+|+.|.-.=..-.-+.-+++.
T Consensus 182 ~~~~~~~~~~~~~~~--~~~~~~~--~~-~~~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~ 254 (296)
T PRK15430 182 ETMWLLPVAAIYLFA--IADSSTS--HM-GQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMF 254 (296)
T ss_pred HHHHHHHHHHHHHHH--HccCCcc--cc-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 565555555443221 1111110 00 0111111111 1122344555566777888886554444444444443
No 19
>KOG1582|consensus
Probab=95.22 E-value=0.13 Score=43.31 Aligned_cols=136 Identities=16% Similarity=0.236 Sum_probs=88.2
Q ss_pred CCCCccCCccchhHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhccCCCCch
Q psy10759 1 MGSNTEWGSKSLKKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYKADGDDTL 80 (162)
Q Consensus 1 ~g~~~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~~~~~s~ 80 (162)
||...=+||+..+...|-.++.+|.+...+.+.+.+ ++. ..+|+.++-.+-+.=++-|=.-||.+|. .+.+-
T Consensus 149 ggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~s------PNF-~~~Gv~mIsgALl~DA~iGNvQEk~m~~-~~~ss 220 (367)
T KOG1582|consen 149 GGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTS------PNF-NLIGVMMISGALLADAVIGNVQEKAMKM-NPASS 220 (367)
T ss_pred eeeeeccccccHHHHHHHHHHHHHHHhhhhcccccC------CCc-ceeeHHHHHHHHHHHHHhhHHHHHHHhh-CCCCc
Confidence 456667899999999999999999999998776532 222 4789988888888889999999999994 33332
Q ss_pred HHHHHHHHHH--HHHHHHHHHHhcCCccccccCccccCc-----hh-HHHHHHHHhhhhHH-HhhHHhhcchhHHHHHHH
Q psy10759 81 LIKNLQLSLL--SIPISMINVLLQDSDTVSQHGLFFGYD-----GL-VLTDVLFNALGGLI-ISLVLKHHDNITKIFSTS 151 (162)
Q Consensus 81 ~~~N~qL~~~--gi~~~~~~~~~~dg~~~~~~gff~G~~-----~~-~~~vi~~~A~gGl~-va~v~KyadnI~K~fa~s 151 (162)
.-+-+|.+ |.++-+..+.++ | ++|.+|+ |+ +....+.-+..|.+ +..|+ +..|.|...
T Consensus 221 --~EmvfySy~iG~vflf~~mvlT-g------e~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VL----alI~~fGA~ 287 (367)
T KOG1582|consen 221 --SEMVFYSYGIGFVFLFAPMVLT-G------ELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVL----ALIKLFGAL 287 (367)
T ss_pred --ceEEEeeecccHHHHHHHHHhc-c------cchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHH----HHHHHhchh
Confidence 11223444 455666666654 3 3444443 34 66666666666653 33333 234555544
Q ss_pred HHHHhh
Q psy10759 152 VSIVVT 157 (162)
Q Consensus 152 ~sivlt 157 (162)
.+..+|
T Consensus 288 ~aatvT 293 (367)
T KOG1582|consen 288 IAATVT 293 (367)
T ss_pred HHHHHH
Confidence 444433
No 20
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=95.14 E-value=0.13 Score=42.06 Aligned_cols=60 Identities=10% Similarity=0.109 Sum_probs=41.0
Q ss_pred CCccCCccchhHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhh
Q psy10759 3 SNTEWGSKSLKKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIY 72 (162)
Q Consensus 3 ~~~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~l 72 (162)
..++|+|++++||.++.+-+.|+.+...++... ....|....+.++++-+...++.++..
T Consensus 108 ~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~----------~~~~g~~~~l~aal~~a~~~i~~k~~~ 167 (281)
T TIGR03340 108 TLTLGETLSPLAWLGILIITLGLLVLGLSRFAQ----------HRRKAYAWALAAALGTAIYSLSDKAAA 167 (281)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhcccccc----------cchhHHHHHHHHHHHHHHhhhhccccc
Confidence 346899999999999999999999875432110 113466566667776666666555543
No 21
>KOG1580|consensus
Probab=94.51 E-value=0.29 Score=40.52 Aligned_cols=95 Identities=18% Similarity=0.158 Sum_probs=70.6
Q ss_pred CCCccCCccchhHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhcc-CCCCch
Q psy10759 2 GSNTEWGSKSLKKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYKA-DGDDTL 80 (162)
Q Consensus 2 g~~~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~-~~~~s~ 80 (162)
|-.+.+|+++.++..+.++.++||++.-+.+.+-. ..++.....|=++.+++-..-|+.|+.-|++-+. .+..+.
T Consensus 129 GVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~----g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~ 204 (337)
T KOG1580|consen 129 GVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVG----GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTS 204 (337)
T ss_pred ehhhhcccccHHHHHHHHHHHHHHHHhhccccccC----CCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchh
Confidence 55678999999999999999999999988766532 2334466788899999999999999999999884 222345
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q psy10759 81 LIKNLQLSLLSIPISMINVLLQ 102 (162)
Q Consensus 81 ~~~N~qL~~~gi~~~~~~~~~~ 102 (162)
.++|+.++ |-+....+++++
T Consensus 205 MM~~~Nlw--StL~Lg~g~lfT 224 (337)
T KOG1580|consen 205 MMFYTNLW--STLYLGAGLLFT 224 (337)
T ss_pred hHHHHHHH--HHHHhhhhheeh
Confidence 66666554 555444555543
No 22
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=93.91 E-value=1.5 Score=35.06 Aligned_cols=55 Identities=5% Similarity=-0.074 Sum_probs=37.3
Q ss_pred CCccCCccchhHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhh
Q psy10759 3 SNTEWGSKSLKKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIY 72 (162)
Q Consensus 3 ~~~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~l 72 (162)
..++|+|++++||.++.+-++|+++.-.++. + .. ..++.++++-++..++.++.-
T Consensus 115 ~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~---------~--~~----~~~l~aa~~~a~~~i~~~~~~ 169 (256)
T TIGR00688 115 RVFLKERISRFQFIAVIIATLGVISNIVLKG---------S--LP----WEALVLAFSFTAYGLIRKALK 169 (256)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC---------C--ch----HHHHHHHHHHHHHHHHHhhcC
Confidence 3568999999999999999999997642211 0 11 124455666666677776643
No 23
>KOG1443|consensus
Probab=92.85 E-value=0.9 Score=38.73 Aligned_cols=114 Identities=21% Similarity=0.324 Sum_probs=66.8
Q ss_pred HHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhccCCCCchHHHH-------HHHHH
Q psy10759 17 SLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYKADGDDTLLIKN-------LQLSL 89 (162)
Q Consensus 17 aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~~~~~s~~~~N-------~qL~~ 89 (162)
...+..+|+.+..+.+.+ -...|+..+..++++||+..+|.|+++++ . +.|.|| +|..+
T Consensus 143 ~v~lI~~Glflft~KsTq-----------f~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~-~--~~~~~~P~~ti~~l~p~M 208 (349)
T KOG1443|consen 143 IVLLIAVGLFLFTYKSTQ-----------FNIEGFFLVLAASLLSGLRWAFTQMLLRN-Q--PSAKRNPIDTIFHLQPWM 208 (349)
T ss_pred HHHHHhhheeEEEecccc-----------eeehhHHHHHHHHHhhhhhHHHHHHHHhc-C--ccccCCCeeeHHHhhhHH
Confidence 345566777777776553 34789999999999999999999999994 2 223333 33221
Q ss_pred HHHHHHHHHHHhcCCccccccCccccCch-hHHHHHHHHhhhhHHHhhHHhhcchhHH
Q psy10759 90 LSIPISMINVLLQDSDTVSQHGLFFGYDG-LVLTDVLFNALGGLIISLVLKHHDNITK 146 (162)
Q Consensus 90 ~gi~~~~~~~~~~dg~~~~~~gff~G~~~-~~~~vi~~~A~gGl~va~v~KyadnI~K 146 (162)
++..-.....++..........|+-++. ..|-++..-+.||+ .++++-.+.=+++
T Consensus 209 -~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~-laF~l~~sEflLl 264 (349)
T KOG1443|consen 209 -SIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGL-LAFLLEFSEFLLL 264 (349)
T ss_pred -HHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHH-HHHHHHHHHHhee
Confidence 1111112223333333333444444443 25556666677887 5666666554443
No 24
>KOG1441|consensus
Probab=92.41 E-value=0.056 Score=45.94 Aligned_cols=83 Identities=18% Similarity=0.303 Sum_probs=66.6
Q ss_pred CccCCccchhHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhccCCCCchHHH
Q psy10759 4 NTEWGSKSLKKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYKADGDDTLLIK 83 (162)
Q Consensus 4 ~~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~~~~~s~~~~ 83 (162)
.+.+|+.++.-|++|+....||++...++.+ -.+.|++..+.+.+..++-.+|.|+++| +++ .-+.
T Consensus 129 ~~~~~~~s~~~~lsL~piv~GV~ias~~e~~-----------fn~~G~i~a~~s~~~~al~~I~~~~ll~-~~~--~~~~ 194 (316)
T KOG1441|consen 129 LLLGKTYSSMTYLSLLPIVFGVAIASVTELS-----------FNLFGFISAMISNLAFALRNILSKKLLT-SKG--ESLN 194 (316)
T ss_pred HHhCCCCcceEEEEEEEeeeeEEEeeecccc-----------ccHHHHHHHHHHHHHHHHHHHHHHHhhh-ccc--cccC
Confidence 4678999999999999999999998875443 3489999999999999999999999998 333 4456
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10759 84 NLQLSLLSIPISMINVL 100 (162)
Q Consensus 84 N~qL~~~gi~~~~~~~~ 100 (162)
+++|+-+-.++.+...+
T Consensus 195 ~~~ll~y~ap~s~~~Ll 211 (316)
T KOG1441|consen 195 SMNLLYYTAPISLIFLL 211 (316)
T ss_pred chHHHHHhhhHHHHHHh
Confidence 67777666666665544
No 25
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=90.66 E-value=8.4 Score=31.63 Aligned_cols=131 Identities=12% Similarity=-0.036 Sum_probs=68.6
Q ss_pred CccchhHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhccCCCCchHHHHHHH
Q psy10759 8 GSKSLKKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYKADGDDTLLIKNLQL 87 (162)
Q Consensus 8 r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~~~~~s~~~~N~qL 87 (162)
||.++.+|++ +-++|+.+.-.+..+. ......|.+..+.++++=++.-++..|..+ +. .+.. ...+.
T Consensus 117 ~~~~~~~~~~--i~~~Gv~li~~~~~~~--------~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~-~~-~~~~-~~~~~ 183 (293)
T PRK10532 117 RRPVDFVWVV--LAVLGLWFLLPLGQDV--------SHVDLTGAALALGAGACWAIYILSGQRAGA-EH-GPAT-VAIGS 183 (293)
T ss_pred CChHHHHHHH--HHHHHHheeeecCCCc--------ccCChHHHHHHHHHHHHHHHHHHHHHHHhc-cC-CchH-HHHHH
Confidence 5555666654 4578887754322211 112357999999999998888888888866 32 2333 23333
Q ss_pred HHHHHHHHHHHHHhcCCccccccCccccCchh-----HHHHHHHHhhhhHHHhhHHhhcchhHHHHHHHHHHHhhhhh
Q psy10759 88 SLLSIPISMINVLLQDSDTVSQHGLFFGYDGL-----VLTDVLFNALGGLIISLVLKHHDNITKIFSTSVSIVVTFVL 160 (162)
Q Consensus 88 ~~~gi~~~~~~~~~~dg~~~~~~gff~G~~~~-----~~~vi~~~A~gGl~va~v~KyadnI~K~fa~s~sivlt~~~ 160 (162)
+++...........+++ - .+++. .++.++...++=.+-..-+|+.+.-.=+.-..+.-+.+.++
T Consensus 184 -~~~~~~l~~~~~~~~~~-----~---~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~ 252 (293)
T PRK10532 184 -LIAALIFVPIGALQAGE-----A---LWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVS 252 (293)
T ss_pred -HHHHHHHHHHHHHccCc-----c---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHH
Confidence 33333322222222211 0 12332 23333333334345567778877665555555555555443
No 26
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=89.56 E-value=2.9 Score=34.86 Aligned_cols=137 Identities=11% Similarity=0.171 Sum_probs=74.3
Q ss_pred CCCccCCccchhHHH----HHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhccCCC
Q psy10759 2 GSNTEWGSKSLKKVF----SLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYKADGD 77 (162)
Q Consensus 2 g~~~L~r~lS~~QW~----aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~~~~ 77 (162)
|..+++.--+..||. |++++.+|+.+....+.+++ +.++.++...|+...+++.+--.+ -..+-+..+-+.-
T Consensus 90 gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~---~~~~~~~~~kgi~~Ll~stigy~~-Y~~~~~~~~~~~~ 165 (269)
T PF06800_consen 90 GVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSD---KSSSKSNMKKGILALLISTIGYWI-YSVIPKAFHVSGW 165 (269)
T ss_pred HHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccccccc---ccccccchhhHHHHHHHHHHHHHH-HHHHHHhcCCChh
Confidence 455677777788887 89999999999888776643 112244667777765555433222 1112222221111
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhcC--CccccccCccccCch--hHHHHHHHHhhhhHHHhhHHhhcchhH
Q psy10759 78 DTLLIKNLQLSLLSIPISMINVLLQD--SDTVSQHGLFFGYDG--LVLTDVLFNALGGLIISLVLKHHDNIT 145 (162)
Q Consensus 78 ~s~~~~N~qL~~~gi~~~~~~~~~~d--g~~~~~~gff~G~~~--~~~~vi~~~A~gGl~va~v~KyadnI~ 145 (162)
.-+.-|.+=+.+-+++++... ++ .++..-.+.+.|.-| -.+..++...-.|..+++.+...+-|+
T Consensus 166 ~~~lPqaiGm~i~a~i~~~~~---~~~~~~k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvI 234 (269)
T PF06800_consen 166 SAFLPQAIGMLIGAFIFNLFS---KKPFFEKKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVI 234 (269)
T ss_pred HhHHHHHHHHHHHHHHHhhcc---cccccccchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHH
Confidence 223445554554445544432 11 011122344455332 245556666677888888877776554
No 27
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=88.90 E-value=0.28 Score=36.00 Aligned_cols=34 Identities=32% Similarity=0.228 Sum_probs=29.0
Q ss_pred CCCccCCccchhHHHHHHHHHhhhhheeccCCCC
Q psy10759 2 GSNTEWGSKSLKKVFSLGVLLFGIVLIQIDESAS 35 (162)
Q Consensus 2 g~~~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~ 35 (162)
|..+++.++|..||+.+.++.+|++..+..+.+.
T Consensus 75 g~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~~~ 108 (120)
T PRK10452 75 SVLLFDESLSLMKIAGLTTLVAGIVLIKSGTRKA 108 (120)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 4457899999999999999999999998766443
No 28
>KOG1444|consensus
Probab=86.66 E-value=5.5 Score=33.90 Aligned_cols=116 Identities=20% Similarity=0.210 Sum_probs=72.8
Q ss_pred ccCCccchhHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhccCCCCc----h
Q psy10759 5 TEWGSKSLKKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYKADGDDT----L 80 (162)
Q Consensus 5 ~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~~~~~s----~ 80 (162)
++|+|.++.=|.|+.+..+|....-.++... ...|+.-.++.|++...=++|.++..| ..+.+ .
T Consensus 124 f~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf-----------~~~gY~w~~~n~~~~a~~~v~~kk~vd-~~~l~~~~lv 191 (314)
T KOG1444|consen 124 FFGKRPSNKVWASVFAMIIGSVAAAFTDLSF-----------NLRGYSWALANCLTTAAFVVYVKKSVD-SANLNKFGLV 191 (314)
T ss_pred hcCcCchhhHHHHHHHHHHHHHhhcccccee-----------cchhHHHHHHHHHHHHHHHHHHHHhhc-cccccceeEE
Confidence 5789999999999999999987766544432 233888999999999999999999998 44332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCccccccCccccCchhHHHHHHHHhhhhHHHhhH
Q psy10759 81 LIKNLQLSLLSIPISMINVLL-QDSDTVSQHGLFFGYDGLVLTDVLFNALGGLIISLV 137 (162)
Q Consensus 81 ~~~N~qL~~~gi~~~~~~~~~-~dg~~~~~~gff~G~~~~~~~vi~~~A~gGl~va~v 137 (162)
...|+ +++++..+..++ .|.+++ ...+=.-+++.+|..+.+.-+.|+.+++.
T Consensus 192 ~yNnl----~~L~~l~~~~~~~ge~~~l-~~~~~~~~~~~~~~~~~lScv~gf~isy~ 244 (314)
T KOG1444|consen 192 FYNNL----LSLPPLLILSFITGELDAL-SLNFDNWSDSSVLVVMLLSCVMGFGISYT 244 (314)
T ss_pred eehhH----HHHHHHHHHHHHhcchHHH-HhhcccccchhHHHHHHHHHHHHHHHHHH
Confidence 23333 344444333333 332211 11111122355677777766777666554
No 29
>KOG2766|consensus
Probab=85.33 E-value=0.047 Score=45.46 Aligned_cols=91 Identities=18% Similarity=0.154 Sum_probs=70.3
Q ss_pred ccCCccchhHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhccCCCCchHHHH
Q psy10759 5 TEWGSKSLKKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYKADGDDTLLIKN 84 (162)
Q Consensus 5 ~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~~~~~s~~~~N 84 (162)
+|+.|+-..|..+.+....|++++-.++..+. ++....|+..|=.++++.+.+=+.+.+--|...| +.+...--
T Consensus 125 fLktrYrlmki~gV~iCi~GvvmvV~sDV~ag---d~aggsnp~~GD~lvi~GATlYaVSNv~EEflvk---n~d~~elm 198 (336)
T KOG2766|consen 125 FLKTRYRLMKISGVVICIVGVVMVVFSDVHAG---DRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVK---NADRVELM 198 (336)
T ss_pred HHHHHHhhheeeeEEeEecceEEEEEeeeccc---cccCCCCCccCcEEEEecceeeeeccccHHHHHh---cCcHHHHH
Confidence 56677777777788888889988877766542 3344568888888999999999999999999999 34555556
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy10759 85 LQLSLLSIPISMINVLL 101 (162)
Q Consensus 85 ~qL~~~gi~~~~~~~~~ 101 (162)
-+|.+||.+++.+..+.
T Consensus 199 ~~lgLfGaIIsaIQ~i~ 215 (336)
T KOG2766|consen 199 GFLGLFGAIISAIQFIF 215 (336)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 67888999888888444
No 30
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=82.95 E-value=6.5 Score=32.51 Aligned_cols=88 Identities=11% Similarity=0.072 Sum_probs=56.5
Q ss_pred CCccCCccchhH----HHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhccCCCC
Q psy10759 3 SNTEWGSKSLKK----VFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYKADGDD 78 (162)
Q Consensus 3 ~~~L~r~lS~~Q----W~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~~~~~ 78 (162)
..++|++.+++| +.++++.++|+.++-..+.++. ++.+..+...|+...+.+++.=++..+..++. + .+
T Consensus 105 ~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~---~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~-~---~~ 177 (290)
T TIGR00776 105 VIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSA---GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF-G---VD 177 (290)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhHheEEecccccc---ccccccchhhHHHHHHHHHHHHHHHHHHHHHc-C---CC
Confidence 456789999999 9999999999999865532211 10011344679988888888877777888764 2 22
Q ss_pred chHH---HHHHHHHHHHHHHHH
Q psy10759 79 TLLI---KNLQLSLLSIPISMI 97 (162)
Q Consensus 79 s~~~---~N~qL~~~gi~~~~~ 97 (162)
+... |-.-+.+.+++++..
T Consensus 178 ~~~~~~~~~~g~~~~~~~~~~~ 199 (290)
T TIGR00776 178 GLSVLLPQAIGMVIGGIIFNLG 199 (290)
T ss_pred cceehhHHHHHHHHHHHHHHHH
Confidence 3333 444444555555543
No 31
>KOG1442|consensus
Probab=82.33 E-value=9.6 Score=32.32 Aligned_cols=90 Identities=13% Similarity=0.117 Sum_probs=69.1
Q ss_pred chhhHHHHHHHHHHhhhhHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhcCCccccccCccccCchhHHHHHH
Q psy10759 46 NQLIGFGQVILASVSSGFTSVYLERIYKADGDDTLLIKNLQLSLLSIPISMINVLLQDSDTVSQHGLFFGYDGLVLTDVL 125 (162)
Q Consensus 46 ~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~~~~~s~~~~N~qL~~~gi~~~~~~~~~~dg~~~~~~gff~G~~~~~~~vi~ 125 (162)
-.+.|++.-+.+++.-++=++|+.|.+- ..++.+|.-......+..+..+....+ .||--.-.+|=|=++++-|.+..
T Consensus 182 ls~~GvifGVlaSl~vAlnaiytkk~l~-~v~~~iw~lt~ynnv~a~lLflpll~l-nge~~~v~~~~~l~a~~Fw~~mt 259 (347)
T KOG1442|consen 182 LSWIGVIFGVLASLAVALNAIYTKKVLP-PVGDCIWRLTAYNNVNALLLFLPLLIL-NGEFQAVVGFPHLPAIKFWILMT 259 (347)
T ss_pred cchhhhHHHHHHHHHHHHHHHhhheecc-cccCeehhhHHHHHHHHHHHHHHHHHH-cchHHHHcCcccchHHHHHHHHH
Confidence 4688999999999999999999998887 677899999999999888777666554 34321224555556788899888
Q ss_pred HHhhhhHHHhhH
Q psy10759 126 FNALGGLIISLV 137 (162)
Q Consensus 126 ~~A~gGl~va~v 137 (162)
+..+-|..+.+|
T Consensus 260 LsglfgF~mgyv 271 (347)
T KOG1442|consen 260 LSGLFGFAMGYV 271 (347)
T ss_pred HHHHHHHHhhhe
Confidence 888777766655
No 32
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=78.63 E-value=3.7 Score=32.25 Aligned_cols=96 Identities=15% Similarity=0.042 Sum_probs=61.5
Q ss_pred CCCccCCccchhHHHHHHHHHhhhhheeccCCCCcc-----------ccccCCCCchhhHHHHHHHHHHhhhhHHHHHHh
Q psy10759 2 GSNTEWGSKSLKKVFSLGVLLFGIVLIQIDESASES-----------ISRKSDNGNQLIGFGQVILASVSSGFTSVYLER 70 (162)
Q Consensus 2 g~~~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~-----------~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~ 70 (162)
|-...+||++..|+++..+++.|+....+++.+... ..+...+.....|.....+.+++++...-+++.
T Consensus 22 ~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~~~~g~~~~l~a~~~~~~~~ 101 (222)
T TIGR00803 22 NLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGNPVVGLSAVLSALLSSGFAG 101 (222)
T ss_pred cccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccccHHHHHHHHHHHHHHHhhhH
Confidence 445678999999999999999999987665442210 001111122456888888888888888899999
Q ss_pred hhccCCCCchHHHHHHHHHHHHHHHHHH
Q psy10759 71 IYKADGDDTLLIKNLQLSLLSIPISMIN 98 (162)
Q Consensus 71 ~lK~~~~~s~~~~N~qL~~~gi~~~~~~ 98 (162)
+++ +....-...++....++.++....
T Consensus 102 ~y~-e~~~k~~~~~~~~~~~~l~~~~~~ 128 (222)
T TIGR00803 102 VYF-EKILKDGDTMFWSRNLQLPLFGLF 128 (222)
T ss_pred HHH-HHcccCCCCchHHHHHHHHHHHHH
Confidence 998 443332233444444555444433
No 33
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=74.85 E-value=21 Score=26.81 Aligned_cols=69 Identities=17% Similarity=0.091 Sum_probs=47.2
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhcCCc---cccccCccccCchhHHHH
Q psy10759 47 QLIGFGQVILASVSSGFTSVYLERIYKADGDDTLLIKNLQLSLLSIPISMINVLLQDSD---TVSQHGLFFGYDGLVLTD 123 (162)
Q Consensus 47 ~~~G~~~vl~~~~~Sg~AgVy~E~~lK~~~~~s~~~~N~qL~~~gi~~~~~~~~~~dg~---~~~~~gff~G~~~~~~~v 123 (162)
.+.|..+.++++.++.+-|-|+-..-||...++-= -+|+| .--+-|||.-+|+|...+
T Consensus 34 E~~Gt~aL~ls~~l~~mig~yl~~~~rr~~~rPED-------------------~~daEI~dgAGe~GfFsP~SwWPl~l 94 (137)
T PF12270_consen 34 EWVGTVALVLSGGLALMIGFYLRFTARRIGPRPED-------------------REDAEIADGAGELGFFSPHSWWPLVL 94 (137)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcc-------------------ccccccccCCCCcCcCCCccHhHHHH
Confidence 68999999999999999999999999862111100 01111 123578999999887777
Q ss_pred HHHHhhhhHHH
Q psy10759 124 VLFNALGGLII 134 (162)
Q Consensus 124 i~~~A~gGl~v 134 (162)
-..-|+.++-+
T Consensus 95 a~~~al~~lGl 105 (137)
T PF12270_consen 95 AAAAALVFLGL 105 (137)
T ss_pred HHHHHHHHHHH
Confidence 66666555433
No 34
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=74.66 E-value=1.2 Score=37.38 Aligned_cols=30 Identities=13% Similarity=0.034 Sum_probs=25.8
Q ss_pred CCCccCCccchhHHHHHHHHHhhhhheecc
Q psy10759 2 GSNTEWGSKSLKKVFSLGVLLFGIVLIQID 31 (162)
Q Consensus 2 g~~~L~r~lS~~QW~aL~lL~~Gv~l~q~~ 31 (162)
|.-+||.|+|+.||+|+.+=.+||..-.+.
T Consensus 116 G~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 116 GRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999875544
No 35
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=74.23 E-value=1.8 Score=31.18 Aligned_cols=32 Identities=9% Similarity=0.096 Sum_probs=27.5
Q ss_pred CCCccCCccchhHHHHHHHHHhhhhheeccCC
Q psy10759 2 GSNTEWGSKSLKKVFSLGVLLFGIVLIQIDES 33 (162)
Q Consensus 2 g~~~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~ 33 (162)
|.-+++++++..||+.+.++.+|++..++.+.
T Consensus 75 g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~ 106 (110)
T PRK09541 75 SWGFFGQRLDLPAIIGMMLICAGVLVINLLSR 106 (110)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34578999999999999999999999887543
No 36
>KOG2765|consensus
Probab=72.82 E-value=17 Score=31.89 Aligned_cols=64 Identities=17% Similarity=0.262 Sum_probs=47.1
Q ss_pred CccCCccchhHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhcc
Q psy10759 4 NTEWGSKSLKKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYKA 74 (162)
Q Consensus 4 ~~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~ 74 (162)
-+.+.|+|..+.+++++=+.|++++.+++..+. .+.+..++++|-+..++++++= |||.- ++|+
T Consensus 205 if~~e~ft~sKllav~~si~GViiVt~~~s~~~---~~~~a~~~llG~llaL~sA~~Y---avY~v-llk~ 268 (416)
T KOG2765|consen 205 IFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN---SDLPASRPLLGNLLALLSALLY---AVYTV-LLKR 268 (416)
T ss_pred HcCcchhhHHHHHHHHHhhccEEEEEecccccc---ccCCccchhHHHHHHHHHHHHH---HHHHH-HHHh
Confidence 345789999999999999999999998876542 3334457889988777666543 67764 4453
No 37
>COG4720 Predicted membrane protein [Function unknown]
Probab=72.32 E-value=3.7 Score=32.13 Aligned_cols=64 Identities=20% Similarity=0.214 Sum_probs=42.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhcCCccccccCccccCchhHHHHHHHHhhhhHHHhhHHhhc
Q psy10759 78 DTLLIKNLQLSLLSIPISMINVLLQDSDTVSQHGLFFGYDGLVLTDVLFNALGGLIISLVLKHH 141 (162)
Q Consensus 78 ~s~~~~N~qL~~~gi~~~~~~~~~~dg~~~~~~gff~G~~~~~~~vi~~~A~gGl~va~v~Kya 141 (162)
..++.++.-+++.+++|.=..-.+..+-.-.-..++.||..|+|..++.+-.-|++.+++-|+.
T Consensus 35 ~~i~L~da~i~las~lfGs~~G~lvg~iG~al~Dll~gy~~W~~~tlv~~G~~g~i~g~~~k~~ 98 (177)
T COG4720 35 GFLTLGDAGIALASFLFGSRAGALVGGLGHALKDLLSGYPSWMFFTLVIHGLIGLIAGLFGKRE 98 (177)
T ss_pred CeeeHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHhcCCccHHHHHHHHhchhhhhhhhhhhhh
Confidence 5677777777777766652211111110001133577899999999999999999999998887
No 38
>PRK13499 rhamnose-proton symporter; Provisional
Probab=71.98 E-value=65 Score=27.81 Aligned_cols=91 Identities=14% Similarity=0.052 Sum_probs=51.4
Q ss_pred ccchhHHHHHHHHHhhhhheeccCCCCccc--cccCCCCchhhHHHHHHHHHHhhhhHH-------HHHHhhhccCCCCc
Q psy10759 9 SKSLKKVFSLGVLLFGIVLIQIDESASESI--SRKSDNGNQLIGFGQVILASVSSGFTS-------VYLERIYKADGDDT 79 (162)
Q Consensus 9 ~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~--~~~~~~~~~~~G~~~vl~~~~~Sg~Ag-------Vy~E~~lK~~~~~s 79 (162)
+.-..=..+++++.+|+++........+++ +++..+.+...|+...+++.+.|++=. +..|...+ ....+
T Consensus 132 ~~g~~~~~gv~liliGi~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~-~g~~~ 210 (345)
T PRK13499 132 NGGRMTLLGVLVALIGVAIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAA-LGVDP 210 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhh-cCCCc
Confidence 333445677888899999887722221111 111345678899988888887776666 33333333 22344
Q ss_pred hHHHHHHHH---HHHHHHHHHHHH
Q psy10759 80 LLIKNLQLS---LLSIPISMINVL 100 (162)
Q Consensus 80 ~~~~N~qL~---~~gi~~~~~~~~ 100 (162)
.+.-+-|.. .-+.+.|++-..
T Consensus 211 ~~~~lp~~~~~~~G~~~~n~~~~~ 234 (345)
T PRK13499 211 LYAALPSYVVIMGGGAITNLGFCF 234 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555543 455666654433
No 39
>COG2149 Predicted membrane protein [Function unknown]
Probab=71.71 E-value=6.3 Score=28.91 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=44.3
Q ss_pred chhHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhc
Q psy10759 11 SLKKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYK 73 (162)
Q Consensus 11 S~~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK 73 (162)
=..+-.||.++..|+.+.|+.+.-. .+.....+|...++++-.+++.+-.=.+++-+
T Consensus 27 LAWiRTsLallafGvai~~f~~~l~------~~~~r~~lg~fii~~gil~~a~g~~r~~~~~~ 83 (120)
T COG2149 27 LAWIRTSLALLAFGVAIDQFVPFLA------TPVIRELLGVFLILVGILLAALGALRWQRVER 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455679999999999999876542 23446789999999999999998887766654
No 40
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=66.81 E-value=49 Score=25.84 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=17.3
Q ss_pred ccCCccchhHHHHHHH-HHhhhhheec
Q psy10759 5 TEWGSKSLKKVFSLGV-LLFGIVLIQI 30 (162)
Q Consensus 5 ~L~r~lS~~QW~aL~l-L~~Gv~l~q~ 30 (162)
..+||+++.||+++++ +..|....-+
T Consensus 42 ~~~~~v~~m~~is~~lv~vFGglTl~~ 68 (178)
T TIGR00997 42 VKYKKVEKMQWISFVLIVVFGGLTLIF 68 (178)
T ss_pred HHhCCccHHHHHHHHHHHHHHHHHHHh
Confidence 3578999999999554 4455544333
No 41
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=61.03 E-value=43 Score=28.99 Aligned_cols=91 Identities=21% Similarity=0.296 Sum_probs=53.6
Q ss_pred CCchhhHHHHHHHHHHhhhhHHHHHHhhhccCCCCchHH-HHHHHHHHHHHHH-HHHHHhcCCccccccCccccCch---
Q psy10759 44 NGNQLIGFGQVILASVSSGFTSVYLERIYKADGDDTLLI-KNLQLSLLSIPIS-MINVLLQDSDTVSQHGLFFGYDG--- 118 (162)
Q Consensus 44 ~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~~~~~s~~~-~N~qL~~~gi~~~-~~~~~~~dg~~~~~~gff~G~~~--- 118 (162)
.+-.+.|++.+++.-.+.|.||..-||-+. ++..+... .-+-+++.+=+++ ....-+..|+++.+.-.-+|=++
T Consensus 134 g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~-~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~ 212 (344)
T PF06379_consen 134 GQIVLLGVAVCLIGIAICGKAGSMKEKELG-EEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYA 212 (344)
T ss_pred chhhhhHHHHHHHHHHHHhHHHHhhhhhhc-cchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHH
Confidence 456789999999999999999999999887 33222222 2233444442222 22233344544433333334333
Q ss_pred --hHHHHHHHHhhhhHHHhhHH
Q psy10759 119 --LVLTDVLFNALGGLIISLVL 138 (162)
Q Consensus 119 --~~~~vi~~~A~gGl~va~v~ 138 (162)
.+|.+|.. ||.++.++.
T Consensus 213 ~l~~~vvv~~---GGf~tN~~y 231 (344)
T PF06379_consen 213 NLPVYVVVLW---GGFITNLIY 231 (344)
T ss_pred hCchhhhhhh---hHHHHHHHH
Confidence 25566655 888887654
No 42
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=57.57 E-value=56 Score=21.99 Aligned_cols=96 Identities=19% Similarity=0.064 Sum_probs=44.7
Q ss_pred hhhhHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhcCCccccccCccccCchhHHHHHHHHhhhhHHHhhHHh
Q psy10759 60 SSGFTSVYLERIYKADGDDTLLIKNLQLSLLSIPISMINVLLQDSDTVSQHGLFFGYDGLVLTDVLFNALGGLIISLVLK 139 (162)
Q Consensus 60 ~Sg~AgVy~E~~lK~~~~~s~~~~N~qL~~~gi~~~~~~~~~~dg~~~~~~gff~G~~~~~~~vi~~~A~gGl~va~v~K 139 (162)
+.|...++.++..| + .|...-+..-+..+.+ .+......+.++ .+.--.+.+-.....-++..+++-++....+|
T Consensus 2 ~~a~~~~~~k~~~~-~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 2 SWAIYSVFSKKLLK-K--ISPLSITFWRFLIAGI-LLILLLILGRKP-FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred eeeeHHHHHHHHhc-c--CCHHHHHHHHHHHHHH-HHHHHHhhcccc-ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 34567778888887 3 3444444444555544 333323322221 00010111111222222334555566666777
Q ss_pred hcchhHHHHHHHHHHHhhhhh
Q psy10759 140 HHDNITKIFSTSVSIVVTFVL 160 (162)
Q Consensus 140 yadnI~K~fa~s~sivlt~~~ 160 (162)
|.+...=......+.+++.++
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~ 97 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAIL 97 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHH
Confidence 776655555555555555443
No 43
>KOG4314|consensus
Probab=55.31 E-value=90 Score=25.44 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=48.0
Q ss_pred ccCCccchhHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhc
Q psy10759 5 TEWGSKSLKKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYK 73 (162)
Q Consensus 5 ~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK 73 (162)
+|+.|+-..+.+|.++-.-|+++..+.++. ..+.++|+.+.+.+++.|++=-|.|.+.+-
T Consensus 100 VL~D~~~~~kIlaailAI~GiVmiay~DN~---------~a~e~iGi~~AV~SA~~aAlYKV~FK~~iG 159 (290)
T KOG4314|consen 100 VLGDRFMGFKILAAILAIGGIVMIAYADNE---------HADEIIGIACAVGSAFMAALYKVLFKMFIG 159 (290)
T ss_pred HhccchhhhhHHHHHHHhCcEEEEEeccch---------hhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578888889999999999999888765442 346799999888888888887787877765
No 44
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=53.58 E-value=11 Score=24.82 Aligned_cols=22 Identities=36% Similarity=0.406 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHhhhhHHHHHH
Q psy10759 48 LIGFGQVILASVSSGFTSVYLE 69 (162)
Q Consensus 48 ~~G~~~vl~~~~~Sg~AgVy~E 69 (162)
-+|++=+.+.+++|||+.|.+=
T Consensus 12 ri~ViGVt~mAiLSG~gaVstp 33 (72)
T PF12537_consen 12 RIGVIGVTLMAILSGFGAVSTP 33 (72)
T ss_pred HHHHHHHHHHHHHhhhhHHccH
Confidence 4677777889999999999543
No 45
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=48.32 E-value=9.3 Score=32.84 Aligned_cols=33 Identities=12% Similarity=0.023 Sum_probs=28.8
Q ss_pred CCCccCCccchhHHHHHHHHHhhhhheeccCCC
Q psy10759 2 GSNTEWGSKSLKKVFSLGVLLFGIVLIQIDESA 34 (162)
Q Consensus 2 g~~~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~ 34 (162)
|+.+|+.+++..|++..++...|+.+++.++.+
T Consensus 300 g~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~ 332 (358)
T PLN00411 300 GAIFLNDSLYLGCLIGGILITLGFYAVMWGKAN 332 (358)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhh
Confidence 456899999999999999999999999876543
No 46
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=44.79 E-value=1.7e+02 Score=23.92 Aligned_cols=93 Identities=14% Similarity=0.026 Sum_probs=51.9
Q ss_pred HHHHHHhhhccCCCC-chHHHHHHHHHHHHHHHHHHHHhcCCccccccCccccCchhHHHHHHHHhhhhHHHhhHHhhcc
Q psy10759 64 TSVYLERIYKADGDD-TLLIKNLQLSLLSIPISMINVLLQDSDTVSQHGLFFGYDGLVLTDVLFNALGGLIISLVLKHHD 142 (162)
Q Consensus 64 AgVy~E~~lK~~~~~-s~~~~N~qL~~~gi~~~~~~~~~~dg~~~~~~gff~G~~~~~~~vi~~~A~gGl~va~v~Kyad 142 (162)
-|++.|++.+++... .-+.=+..-..+..++..+.......++. +..-++- -+.+.+++.++-.+....+||.+
T Consensus 15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~al~~i~ 89 (303)
T PF08449_consen 15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKS-RKIPLKK----YAILSFLFFLASVLSNAALKYIS 89 (303)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCC-CcChHHH----HHHHHHHHHHHHHHHHHHHHhCC
Confidence 479999999953333 13333333333333344333333221111 1111221 24455777777788889999988
Q ss_pred hhHHHHHHHHHHHhhhhhc
Q psy10759 143 NITKIFSTSVSIVVTFVLK 161 (162)
Q Consensus 143 nI~K~fa~s~sivlt~~~s 161 (162)
-=++.-.-+..++.+.+++
T Consensus 90 ~p~~~~~ks~~~i~vmi~~ 108 (303)
T PF08449_consen 90 YPTQIVFKSSKPIPVMILG 108 (303)
T ss_pred hHHHHHHhhhHHHHHHHHH
Confidence 8777777777777666543
No 47
>PRK03113 putative disulfide oxidoreductase; Provisional
Probab=44.22 E-value=1.3e+02 Score=22.39 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhccCCCCch-HHHHHHHHHHHHHHH
Q psy10759 51 FGQVILASVSSGFTSVYLERIYKADGDDTL-LIKNLQLSLLSIPIS 95 (162)
Q Consensus 51 ~~~vl~~~~~Sg~AgVy~E~~lK~~~~~s~-~~~N~qL~~~gi~~~ 95 (162)
+.+..+.|+..-.++.|+|++++ -.+.++ |.|=+.++..+++..
T Consensus 11 ~~l~~l~~~~~~~~aly~q~v~g-l~PC~LCi~QRi~~~~l~l~~l 55 (139)
T PRK03113 11 LLTAWGASFIATLGSLYFSEIMK-FEPCVLCWYQRIFMYPFVLWLG 55 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHH
Confidence 56666777777788899999998 666775 555666665555443
No 48
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=40.61 E-value=85 Score=23.39 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=22.3
Q ss_pred CccccCchhHHHHHHHHhhhhHHHhhHHhhc
Q psy10759 111 GLFFGYDGLVLTDVLFNALGGLIISLVLKHH 141 (162)
Q Consensus 111 gff~G~~~~~~~vi~~~A~gGl~va~v~Kya 141 (162)
.++.||..|...-.+..++-|++.+++.|.-
T Consensus 66 dll~g~~~~~~~~~i~~~~~g~i~g~~~~~~ 96 (169)
T PF07155_consen 66 DLLSGYGPWAPFTMISKGLMGFIAGLIFRKK 96 (169)
T ss_pred HHhCCCccccHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777666666677777888888777766
No 49
>PRK13499 rhamnose-proton symporter; Provisional
Probab=40.39 E-value=2.2e+02 Score=24.55 Aligned_cols=90 Identities=20% Similarity=0.203 Sum_probs=53.6
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHhhhccC-CCCchHHHHHHHHHHHHHHHHHH-HHhcCCccccccCccccCchh-HHHH
Q psy10759 47 QLIGFGQVILASVSSGFTSVYLERIYKAD-GDDTLLIKNLQLSLLSIPISMIN-VLLQDSDTVSQHGLFFGYDGL-VLTD 123 (162)
Q Consensus 47 ~~~G~~~vl~~~~~Sg~AgVy~E~~lK~~-~~~s~~~~N~qL~~~gi~~~~~~-~~~~dg~~~~~~gff~G~~~~-~~~v 123 (162)
...|++.+++...+.+.||.--||-.+.+ .+..-.-+.+-+.+.+-+..... ..+..+..+++.....|.+++ +.++
T Consensus 137 ~~~gv~liliGi~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp 216 (345)
T PRK13499 137 TLLGVLVALIGVAIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALP 216 (345)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHH
Confidence 67888999999999999998888866521 23456667777777664444333 233334333333223455543 3333
Q ss_pred H-HHHhhhhHHHhh
Q psy10759 124 V-LFNALGGLIISL 136 (162)
Q Consensus 124 i-~~~A~gGl~va~ 136 (162)
. +..-+||+++.+
T Consensus 217 ~~~~~~~G~~~~n~ 230 (345)
T PRK13499 217 SYVVIMGGGAITNL 230 (345)
T ss_pred HHHHHHHHHHHHHH
Confidence 3 234467777774
No 50
>PRK00259 intracellular septation protein A; Reviewed
Probab=36.84 E-value=2e+02 Score=22.35 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=16.1
Q ss_pred ccCCccchhHHHHHHHHH-hhhhhe
Q psy10759 5 TEWGSKSLKKVFSLGVLL-FGIVLI 28 (162)
Q Consensus 5 ~L~r~lS~~QW~aL~lL~-~Gv~l~ 28 (162)
..+||+++.||+++++.. .|.+..
T Consensus 42 ~~~~~v~~m~~i~~~lv~vfGglTl 66 (179)
T PRK00259 42 IRYRKVEKMQLISLVVVVVFGGLTL 66 (179)
T ss_pred HHhCCcchhHHHHHHHHHHHHHHHH
Confidence 357899999999865543 344333
No 51
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=34.97 E-value=1e+02 Score=25.82 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=27.4
Q ss_pred CCchhhHHHHHHHHHHhhhhHHHHHHhhhcc
Q psy10759 44 NGNQLIGFGQVILASVSSGFTSVYLERIYKA 74 (162)
Q Consensus 44 ~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~ 74 (162)
+.+..+|+...++++++.+.+-.+.+|..+|
T Consensus 2 ~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r 32 (300)
T PF05653_consen 2 NTDFYIGVLLAVVSSIFIAVGFNLQKKSHLR 32 (300)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999999999998775
No 52
>TIGR03113 exosortase_2 exosortase 2. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. We designate this relatively uncommon proteobacterial type to be type 2. We propose the gene symbol xrtB. Most species encountered so far with xrtB also contain xrtA (TIGR03109).
Probab=34.75 E-value=1.4e+02 Score=24.74 Aligned_cols=58 Identities=22% Similarity=0.399 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh----------cCCccccccCccccCchhHHHHHHHHhhhhHHHhhHHhh
Q psy10759 80 LLIKNLQLSLLSIPISMINVLL----------QDSDTVSQHGLFFGYDGLVLTDVLFNALGGLIISLVLKH 140 (162)
Q Consensus 80 ~~~~N~qL~~~gi~~~~~~~~~----------~dg~~~~~~gff~G~~~~~~~vi~~~A~gGl~va~v~Ky 140 (162)
-|.|++-+-..+++++.+.-.+ .-|+ -...|++|++.+|+...+..-.+ +.+..++||
T Consensus 199 ~~~r~~~l~~~avpiai~aN~iRv~~l~~l~~~~g~-e~a~g~~H~~~G~v~F~~~~~ll--~~~~~~l~~ 266 (268)
T TIGR03113 199 SIARNVILAIAIIPISFTANVVRVMVLTLVTYHFGD-EAGQGFLHGFAGMVLFVSALLLI--IGVDSLLQY 266 (268)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-HHHhccccccccHHHHHHHHHHH--HHHHHHHHh
Confidence 4567777766666554332111 1222 24689999999998777766555 234444444
No 53
>COG5605 Predicted small integral membrane protein [Function unknown]
Probab=33.44 E-value=34 Score=24.20 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=25.8
Q ss_pred cccCchhHHHHHHHHhhhhHHHhhHHhhc
Q psy10759 113 FFGYDGLVLTDVLFNALGGLIISLVLKHH 141 (162)
Q Consensus 113 f~G~~~~~~~vi~~~A~gGl~va~v~Kya 141 (162)
.+||--|..++++.-+=.|++|+..|..+
T Consensus 44 lqgylrwslilifmilkaglivavfmhma 72 (115)
T COG5605 44 LQGYLRWSLILIFMILKAGLIVAVFMHMA 72 (115)
T ss_pred hhhHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 46888899999999999999999998765
No 54
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=33.32 E-value=82 Score=18.30 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=13.9
Q ss_pred HHHHhhhccCCCCchHHHHHHHHHH
Q psy10759 66 VYLERIYKADGDDTLLIKNLQLSLL 90 (162)
Q Consensus 66 Vy~E~~lK~~~~~s~~~~N~qL~~~ 90 (162)
++.||... |..=|+||+-..+-
T Consensus 7 ~fieryfd---diqkwirnit~cfa 28 (40)
T PF13124_consen 7 AFIERYFD---DIQKWIRNITFCFA 28 (40)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHH
Confidence 35566554 34569999976543
No 55
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=33.05 E-value=1.6e+02 Score=25.26 Aligned_cols=45 Identities=24% Similarity=0.350 Sum_probs=38.6
Q ss_pred cccCccccCchhHHHHHHHHhhhhHHHhhHHhhcchhHHHHHHHH
Q psy10759 108 SQHGLFFGYDGLVLTDVLFNALGGLIISLVLKHHDNITKIFSTSV 152 (162)
Q Consensus 108 ~~~gff~G~~~~~~~vi~~~A~gGl~va~v~KyadnI~K~fa~s~ 152 (162)
-+.|+|-|-+..+++-...++=+|+..++.-+|-|.-=++-..-.
T Consensus 101 i~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~~D~gA~~i~ 145 (314)
T PF03812_consen 101 IQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDEEDVGAFSIL 145 (314)
T ss_pred cccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCHHHhHHHHHH
Confidence 357899999999999999999999999999999999776544333
No 56
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=32.06 E-value=2.3e+02 Score=23.61 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=63.5
Q ss_pred ccCCccchhHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhcc--CCCCc-hH
Q psy10759 5 TEWGSKSLKKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYKA--DGDDT-LL 81 (162)
Q Consensus 5 ~L~r~lS~~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~--~~~~s-~~ 81 (162)
++|+|.+.....+..++.+.-....+++.++... ..+....|++-+..-|+.|+.==....|..|- ..|.+ .+
T Consensus 115 ~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~----~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmf 190 (309)
T COG5070 115 FFGGRVTSLELLSFILMVLSSVVATWGDQQASAF----KAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMF 190 (309)
T ss_pred HhcCccchhhHHHHHHHHHHHHHhccchhhHHHH----HhcccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHH
Confidence 5788999999999999999988888877754311 11345567766677777665433333333331 12222 23
Q ss_pred HHHHHHHHHHHHHHHH-HHHhcCCccccccCccccCchhH--HHHHH
Q psy10759 82 IKNLQLSLLSIPISMI-NVLLQDSDTVSQHGLFFGYDGLV--LTDVL 125 (162)
Q Consensus 82 ~~N~qL~~~gi~~~~~-~~~~~dg~~~~~~gff~G~~~~~--~~vi~ 125 (162)
-.| ..++|..+. .++.+|++ +.+.-++++.-+ |..|-
T Consensus 191 YnN----llslPiL~~~s~~~edws---~~n~annl~~d~l~am~IS 230 (309)
T COG5070 191 YNN----LLSLPILLSFSFLFEDWS---PGNLANNLSVDSLMAMFIS 230 (309)
T ss_pred Hhh----hHHHHHHHHHHHHhccCC---cchhhcCCChHHHHHHHHH
Confidence 333 235555543 34556764 345566666554 55553
No 57
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=30.56 E-value=83 Score=17.48 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=15.2
Q ss_pred HHHHHHHHhhhhHHHHHHh
Q psy10759 52 GQVILASVSSGFTSVYLER 70 (162)
Q Consensus 52 ~~vl~~~~~Sg~AgVy~E~ 70 (162)
+=+.++|..+-+..+++|+
T Consensus 8 lG~~lA~~~~v~~a~w~E~ 26 (30)
T TIGR02106 8 LGTLLACAFGVLNAMWLEL 26 (30)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3356788899999999995
No 58
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=30.36 E-value=80 Score=23.38 Aligned_cols=36 Identities=22% Similarity=0.109 Sum_probs=23.8
Q ss_pred CccccccCccccCchhHHHH-HHHHhhhhHHHhhHHh
Q psy10759 104 SDTVSQHGLFFGYDGLVLTD-VLFNALGGLIISLVLK 139 (162)
Q Consensus 104 g~~~~~~gff~G~~~~~~~v-i~~~A~gGl~va~v~K 139 (162)
|+-+.-.+-++|.|+..|+. .++-.+||+++..+.|
T Consensus 88 G~~Vl~~Pp~~~~t~~LW~~P~~lll~g~~~~~~~~r 124 (126)
T PRK10144 88 GDFVRYNPPLTGQTLVLWALPVVLLLLMALILWRVRA 124 (126)
T ss_pred CCeEEecCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677789999998855 4454556666555554
No 59
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=29.05 E-value=2.4e+02 Score=25.49 Aligned_cols=43 Identities=26% Similarity=0.220 Sum_probs=30.8
Q ss_pred HHHHHHHHhhhhHHHHHHhhhccCCCCchHHHHHHHHHHHHHHH
Q psy10759 52 GQVILASVSSGFTSVYLERIYKADGDDTLLIKNLQLSLLSIPIS 95 (162)
Q Consensus 52 ~~vl~~~~~Sg~AgVy~E~~lK~~~~~s~~~~N~qL~~~gi~~~ 95 (162)
.++++.+++|.+||-+.-+.+| .-+..-|.+|..+...-.|..
T Consensus 301 ~~i~~y~~~~~iaGy~S~~~yk-~~~g~~W~~~~~lt~~~~P~~ 343 (521)
T PF02990_consen 301 AAIILYALTSFIAGYVSARLYK-SFGGKKWKKNSILTSLLFPGI 343 (521)
T ss_pred HHHHHHHHHhhHHHHHHHHHHH-HcCCCceeehhhHHHHHHHHH
Confidence 4456677777777777778888 566668999998876555444
No 60
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=27.64 E-value=4.3e+02 Score=23.30 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=16.3
Q ss_pred cCCccchhHHHHHHHHHhhhhhe
Q psy10759 6 EWGSKSLKKVFSLGVLLFGIVLI 28 (162)
Q Consensus 6 L~r~lS~~QW~aL~lL~~Gv~l~ 28 (162)
++||++..+.+++.++..|+...
T Consensus 343 l~~r~~~~~~~~~G~~l~~l~f~ 365 (500)
T PRK09584 343 MGDRLPMPHKFAIGMVLCSGAFL 365 (500)
T ss_pred hCcCCCcHHHHHHHHHHHHHHHH
Confidence 46777888888887776666643
No 61
>TIGR02896 spore_III_AF stage III sporulation protein AF. This family represents the stage III sporulation protein AF of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of this protein is poorly conserved, so only the N-terminal region, which includes two predicted transmembrane domains, is included in the seed alignment.
Probab=26.20 E-value=1.1e+02 Score=21.92 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCccccccCccccCchhHHHHHHHHhhhhHH
Q psy10759 80 LLIKNLQLSLLSIPISMINVLLQDSDTVSQHGLFFGYDGLVLTDVLFNALGGLI 133 (162)
Q Consensus 80 ~~~~N~qL~~~gi~~~~~~~~~~dg~~~~~~gff~G~~~~~~~vi~~~A~gGl~ 133 (162)
-|++|+-.+ -++..++-++++|++--+--.||- +..+++++++-+-++.
T Consensus 5 ~Wv~~i~~~--~il~t~~~~llP~~~~kkYvr~v~---Gl~Li~~il~Pi~~l~ 53 (106)
T TIGR02896 5 EWVTNIIVL--ILLATILEMLLPNSSLKKYVKFVV---GLILMVVILNPIIKLL 53 (106)
T ss_pred HHHHHHHHH--HHHHHHHHHHCCCccHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 488887654 556667777888764211123333 3677777777766664
No 62
>PF02592 DUF165: Uncharacterized ACR, YhhQ family COG1738; InterPro: IPR003744 This is a family of uncharacterised proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins.
Probab=25.94 E-value=1.3e+02 Score=22.25 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhcc-CCCCchHHHHHHHHHHHH
Q psy10759 51 FGQVILASVSSGFTSVYLERIYKA-DGDDTLLIKNLQLSLLSI 92 (162)
Q Consensus 51 ~~~vl~~~~~Sg~AgVy~E~~lK~-~~~~s~~~~N~qL~~~gi 92 (162)
.++-.++-+.|-+..+|.=.-+|+ ..++++|.||.-=...|-
T Consensus 71 ~~aS~~a~lisq~~d~~if~~lk~~~~~r~lw~R~~~St~isq 113 (145)
T PF02592_consen 71 ALASLIAFLISQLLDVYIFSKLKRKTKGRSLWLRNNGSTAISQ 113 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 345556677888888887777774 345799999987554443
No 63
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=25.05 E-value=1.1e+02 Score=16.68 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=14.6
Q ss_pred HHHHHHHHhhhhHHHHHHh
Q psy10759 52 GQVILASVSSGFTSVYLER 70 (162)
Q Consensus 52 ~~vl~~~~~Sg~AgVy~E~ 70 (162)
+-+.++|..+-+..++.|+
T Consensus 8 lG~~lA~~~~i~~a~wlE~ 26 (28)
T PF08173_consen 8 LGVLLACAFGILNAMWLEK 26 (28)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3356788888888888886
No 64
>PLN02680 carbon-monoxide oxygenase
Probab=24.91 E-value=3.8e+02 Score=21.84 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHH--HhhhhHHHHHHh
Q psy10759 13 KKVFSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILAS--VSSGFTSVYLER 70 (162)
Q Consensus 13 ~QW~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~--~~Sg~AgVy~E~ 70 (162)
.|++|+++-.+|...+-...+..+ .++--+-+.++|+..+++.+ .+.||..-++.+
T Consensus 86 L~~lA~~l~vvGl~avfk~hn~~~--~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 86 LQFLAFCLSLIGVWAALKFHNEKG--IDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred HHHHHHHHHHHHHHHHHHhccccC--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 578888888888877543322211 12223347789987666554 667777755554
No 65
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=24.86 E-value=1.8e+02 Score=18.50 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=25.3
Q ss_pred HHHHHHHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhH
Q psy10759 16 FSLGVLLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFT 64 (162)
Q Consensus 16 ~aL~lL~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~A 64 (162)
.++.++..|+.+.+......++++.. ......+|.+++.++.++-..+
T Consensus 16 t~l~l~~~g~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 63 (73)
T PF02656_consen 16 TALALVGVGLALLRFFSLDHPSSSAS-RRVSKVLGLLLIVLGLLTLIYG 63 (73)
T ss_pred HHHHHHHHHHHHHHhccccccccccc-hHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888765432211111 2223456665555555444444
No 66
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=24.61 E-value=31 Score=28.92 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=23.9
Q ss_pred CCccCCccchhHHHHHHHHHhhhhhee
Q psy10759 3 SNTEWGSKSLKKVFSLGVLLFGIVLIQ 29 (162)
Q Consensus 3 ~~~L~r~lS~~QW~aL~lL~~Gv~l~q 29 (162)
..+||+|++++.|+...+..+|.++.-
T Consensus 95 ~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 95 RFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HHHhcccchHhHHhhHHHHHhhheeeE
Confidence 457999999999999999999998754
No 67
>KOG1580|consensus
Probab=23.84 E-value=62 Score=27.04 Aligned_cols=25 Identities=4% Similarity=-0.174 Sum_probs=20.2
Q ss_pred ccCCccchhHHHHHHHHHhhhhhee
Q psy10759 5 TEWGSKSLKKVFSLGVLLFGIVLIQ 29 (162)
Q Consensus 5 ~L~r~lS~~QW~aL~lL~~Gv~l~q 29 (162)
+++.++|.+||++-++.+.+...=-
T Consensus 288 lf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 288 LFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 5688999999999998888775433
No 68
>COG4711 Predicted membrane protein [Function unknown]
Probab=22.93 E-value=3e+02 Score=22.24 Aligned_cols=64 Identities=14% Similarity=0.163 Sum_probs=29.6
Q ss_pred CccchhHHHHHHHHHhhhhhe---eccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhc
Q psy10759 8 GSKSLKKVFSLGVLLFGIVLI---QIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYK 73 (162)
Q Consensus 8 r~lS~~QW~aL~lL~~Gv~l~---q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK 73 (162)
+|+|+.+-+++++.+++.+-. +.+..+.+ +.++..+-...-+.-+++..+.|.++..|.=..+.
T Consensus 119 ~~isp~h~lal~~~~l~I~y~fvy~a~f~~~~--~~~~~~g~vp~rl~~tmv~y~~~~l~~~y~l~~f~ 185 (217)
T COG4711 119 YRISPYHSLALVLVVLVIMYSFVYTAKFGNDK--KREEGAGFVPRRLRTTMVIYFVSSLASIYMLGIFT 185 (217)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHhhcCCCc--ccccccceeeeehHHHHHHHHHHHHHHHHHHHhhh
Confidence 456666666666666665532 11111110 11111112223344455556666666666655555
No 69
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=22.87 E-value=1.3e+02 Score=22.23 Aligned_cols=36 Identities=22% Similarity=0.035 Sum_probs=23.5
Q ss_pred CccccccCccccCchhHHHH-HHHHhhhhHHHhhHHh
Q psy10759 104 SDTVSQHGLFFGYDGLVLTD-VLFNALGGLIISLVLK 139 (162)
Q Consensus 104 g~~~~~~gff~G~~~~~~~v-i~~~A~gGl~va~v~K 139 (162)
|+-+.-.+-++|.|++.|+. ++.-.+|+.++..++|
T Consensus 88 G~~Vly~Pp~~~~t~~LW~~P~lll~~G~~~~~~~~r 124 (126)
T TIGR03147 88 GDFVLYNPPFKWQTLLLWLLPVLLLLLAFVLLWRVRR 124 (126)
T ss_pred CCeEEecCCCCcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555667789999998855 4555556555555544
No 70
>PF03253 UT: Urea transporter; InterPro: IPR004937 Proteins in this entry include low-affinity urea transporters found in the erythrocytes and kidneys of higher organisms. The erythrocyte proteins carry the clinically important Kidd (Jk) blood group antigens which help determine blood type. The two commonest forms are Jk(a) and Jk(b), which arise from a single residue variation at position 280; aspartate in Jk(a) and asparagine in Jk(b) []. A much rarer phenotype, Jk(null), arises when the protein is not expressed on the erythrocyte surface, and is linked to a urine-concentrating defect []. The Kidd blood group is clinically significant as Jk antibodies can cause acute transfusion reactions and haemolytic disease of the newborn (HDN), where the mother's body creates antibodies against the foetal blood cells. HDN associated with Jk antibodies is generally mild, but fatal cases can occur []. The bacterial proteins in this entry also appear to be involved in urea transport, promoting its entry into the cell []. This uptake of urea can be advantageous for bacteria as its hydrolysis by urease generates ammonium which is an efficient source of nitrogen and, through its buffering capacity, can also provide resistance to acidic conditions.; GO: 0015204 urea transmembrane transporter activity, 0071918 urea transmembrane transport, 0016021 integral to membrane; PDB: 3M6E_A 3K3G_A 3ME1_B 3K3F_A.
Probab=22.42 E-value=1.5e+02 Score=24.88 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=15.1
Q ss_pred chhHHHHHHHHhhhhHHHhhHHhhcchhHH
Q psy10759 117 DGLVLTDVLFNALGGLIISLVLKHHDNITK 146 (162)
Q Consensus 117 ~~~~~~vi~~~A~gGl~va~v~KyadnI~K 146 (162)
+++.|+.++. |+++...+.....++.|
T Consensus 84 ~~~~~~l~~~---ga~ls~~v~~~l~~~~~ 110 (301)
T PF03253_consen 84 SPLSWLLIIL---GAILSTIVTAALSRLLK 110 (301)
T ss_dssp -TTHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHH---HHHHHHHHHHHHHHhhc
Confidence 4555555554 66666666655555554
No 71
>TIGR00077 lspA lipoprotein signal peptidase. Alternate name: lipoprotein signal peptidase
Probab=22.42 E-value=2.2e+02 Score=21.72 Aligned_cols=51 Identities=18% Similarity=0.129 Sum_probs=24.6
Q ss_pred ccCccccCchhHHHHHHHH--hhhhHHHhhHHhhcchhHHHHHHHHHHHhhhhhc
Q psy10759 109 QHGLFFGYDGLVLTDVLFN--ALGGLIISLVLKHHDNITKIFSTSVSIVVTFVLK 161 (162)
Q Consensus 109 ~~gff~G~~~~~~~vi~~~--A~gGl~va~v~KyadnI~K~fa~s~sivlt~~~s 161 (162)
..|+|++.....|..+... ++.++++ .++..+.--|....++++++...++
T Consensus 59 AFg~~~~~~~~~~~l~~~~~~~~~~i~~--~~~~~~~~~~~~~~~l~lIlgGalG 111 (166)
T TIGR00077 59 AFSLLADQGGQVYFLKGLAIAISLGLFV--FLLRYKELFKITNIAFGLIFGGALG 111 (166)
T ss_pred EEecccCCccHHHHHHHHHHHHHHHHHH--HHHHhcccchHHHHHHHHHHHHHHH
Confidence 4567777654444333332 2233322 2222333344455678888776543
No 72
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=22.23 E-value=3e+02 Score=22.55 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=37.5
Q ss_pred ccchhHHHHHHH-HHhhhhheeccCCCCccccccCCCCchhhHHHHHHHHHHhhhhHHHHHHhhhccCCCCchHHHH
Q psy10759 9 SKSLKKVFSLGV-LLFGIVLIQIDESASESISRKSDNGNQLIGFGQVILASVSSGFTSVYLERIYKADGDDTLLIKN 84 (162)
Q Consensus 9 ~lS~~QW~aL~l-L~~Gv~l~q~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~~~~~s~~~~N 84 (162)
|+|.+|...+.. ...|.....++..-.+ . . ++. ...++++....-+-....-++.|+.++.++-...
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~----~-~-~d~---Wi~~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~ 68 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAE----Q-A-GDA---WISVLLGGLIGLLLALLIYYLLKRFPGKTLVEIS 68 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHH----H-c-CCc---HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 689999999777 4556666666654321 1 1 132 3444455555555555556667743445544333
No 73
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=22.08 E-value=4.6e+02 Score=21.73 Aligned_cols=93 Identities=14% Similarity=0.186 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHhhhccCCCCchHHHHHHHHHHHHHHH--HHHHHhcCCccccccCccccCchhHHHHHH
Q psy10759 48 LIGFGQVILASVSSGFTSVYLERIYKADGDDTLLIKNLQLSLLSIPIS--MINVLLQDSDTVSQHGLFFGYDGLVLTDVL 125 (162)
Q Consensus 48 ~~G~~~vl~~~~~Sg~AgVy~E~~lK~~~~~s~~~~N~qL~~~gi~~~--~~~~~~~dg~~~~~~gff~G~~~~~~~vi~ 125 (162)
...++.+++.-.++-+..-+.++.++ +.+.+...+++--.+....+. .+...+. .- |.+... ++.
T Consensus 32 ~~al~il~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~------~l----Gi~~~~--l~a 98 (286)
T PRK10334 32 VAALAIIIVGLIIARMISNAVNRLMI-SRKIDATVADFLSALVRYGIIAFTLIAALG------RV----GVQTAS--VIA 98 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHHHHH------Hc----CCcHHH--HHH
Confidence 44455555555667777777788776 334444444443322222221 1111111 11 444332 234
Q ss_pred HHhhhhHHHhhHHhhcchhHHHHHHHHHHHh
Q psy10759 126 FNALGGLIISLVLKHHDNITKIFSTSVSIVV 156 (162)
Q Consensus 126 ~~A~gGl~va~v~KyadnI~K~fa~s~sivl 156 (162)
.-.++|+.+++-.| +++++|+..+.+.+
T Consensus 99 ~~G~~glaiG~a~q---~~l~N~~sGi~i~~ 126 (286)
T PRK10334 99 VLGAAGLAVGLALQ---GSLSNLAAGVLLVM 126 (286)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 55678999999998 55999998887765
No 74
>PF07836 DmpG_comm: DmpG-like communication domain; InterPro: IPR012425 This domain is found towards the C-terminal region of various aldolase enzymes. It consists of five alpha-helices, four of which form an antiparallel helical bundle that plugs the C terminus of the N-terminal TIM barrel domain []. The communication domain is thought to play an important role in the heterodimerisation of the enzyme []. Members of this entry heterodimerise with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase [].; GO: 0016833 oxo-acid-lyase activity, 0019439 aromatic compound catabolic process; PDB: 1NVM_E.
Probab=21.29 E-value=49 Score=21.79 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=11.4
Q ss_pred HHHhhhhHHHHHHhhhc
Q psy10759 57 ASVSSGFTSVYLERIYK 73 (162)
Q Consensus 57 ~~~~Sg~AgVy~E~~lK 73 (162)
.++++|+||||.-.++.
T Consensus 8 ~sl~~GyAGvySsFl~h 24 (66)
T PF07836_consen 8 DSLTLGYAGVYSSFLLH 24 (66)
T ss_dssp HHHHHHHHT--TTHHHH
T ss_pred HHHHhhccHhhHHHHHH
Confidence 46789999999877654
No 75
>PF12075 KN_motif: KN motif; InterPro: IPR021939 This small motif is found at the N terminus of Kank proteins and has been called the KN (for Kank N-terminal) motif. This protein is found in eukaryotes. Proteins in this family are typically between 413 to 1202 amino acids in length. This protein is found associated with PF00023 from PFAM. This protein has two conserved sequence motifs: TPYG and LDLDF. Kank1 was obtained by positional cloning of a tumor suppressor gene in renal cell carcinoma, while the other members were found by homology search. The family is involved in the regulation of actin polymerisation and cell motility through signaling pathways containing PI3K/Akt and/or unidentified modulators/effectors [].
Probab=21.22 E-value=32 Score=20.25 Aligned_cols=12 Identities=17% Similarity=0.077 Sum_probs=9.8
Q ss_pred HHhhcchhHHHH
Q psy10759 137 VLKHHDNITKIF 148 (162)
Q Consensus 137 v~KyadnI~K~f 148 (162)
.+||.|+|.|+-
T Consensus 16 Fvkyve~i~~g~ 27 (39)
T PF12075_consen 16 FVKYVEDIESGQ 27 (39)
T ss_pred HHHHHHHhccCC
Confidence 479999998874
No 76
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=20.91 E-value=1.9e+02 Score=24.71 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=35.8
Q ss_pred cccCccccCchhHHHHHHHHhhhhHHHhhHHhhcchhHHH
Q psy10759 108 SQHGLFFGYDGLVLTDVLFNALGGLIISLVLKHHDNITKI 147 (162)
Q Consensus 108 ~~~gff~G~~~~~~~vi~~~A~gGl~va~v~KyadnI~K~ 147 (162)
-+.|+|-|-+..+.+-...++=||+..++.-.|-|.-=.+
T Consensus 101 i~~g~~~GlS~LAiiaA~~nsNggLY~aL~~qyGd~~D~g 140 (314)
T TIGR00793 101 VEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAG 140 (314)
T ss_pred ccccceeccHHHHHHHHHhCCcHHHHHHHHHHcCCHhhhh
Confidence 3579999999999999999999999999999999985544
No 77
>PF08360 TetR_C_5: QacR-like protein, C-terminal region; InterPro: IPR013571 This entry represents the C-terminal domain found in the multidrug-binding transcription regulator QacR (P23217 from SWISSPROT) from Staphylococcus aureus, which is a member of the TetR (tetracycline-resistance) transcriptional regulator family of proteins. QacR is able to bind various environmental agents, which include a number of cationic lipophilic compounds, and thus regulate the transcription of QacA (P23215 from SWISSPROT), a multidrug efflux pump []. The C-terminal region of QacR contains a multifaceted, expansive drug-binding pocket, which is composed of several separate, but linked, binding sites []. The C-terminal domains of QacR and TetR share a multi-helical, interlocking structure.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G0E_E 1JUM_A 1RPW_D 1QVT_B 2HQ5_D 1JT0_B 2DTZ_E 1JUP_D 1JT6_D 1JUS_E ....
Probab=20.74 E-value=3.4e+02 Score=19.73 Aligned_cols=109 Identities=14% Similarity=0.187 Sum_probs=66.0
Q ss_pred chhhHHHHHHHHHHhhhhHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhcCCccccccCccccCchhHHHHHH
Q psy10759 46 NQLIGFGQVILASVSSGFTSVYLERIYKADGDDTLLIKNLQLSLLSIPISMINVLLQDSDTVSQHGLFFGYDGLVLTDVL 125 (162)
Q Consensus 46 ~~~~G~~~vl~~~~~Sg~AgVy~E~~lK~~~~~s~~~~N~qL~~~gi~~~~~~~~~~dg~~~~~~gff~G~~~~~~~vi~ 125 (162)
..++|+.--.+--+=.-+.-+--|.... . ..+-++..=-..+.--...+.--+++.| ...|=|+--|+-.+..++
T Consensus 21 eKLy~~a~~~~~~i~~pl~~a~~EF~~~-~-~~~~ev~~~l~~i~~~~~~~~~~ileeG---I~~GEF~~~dv~~~a~il 95 (131)
T PF08360_consen 21 EKLYGMAEHMLDDIQTPLSKAGEEFYSN-Q-SKNPEVLEKLNEIRRKYLEFFQKILEEG---IDSGEFSIDDVEELAYIL 95 (131)
T ss_dssp HHHHHHHHHHHHSSSGGGHHHHHHHHHH-C-SSSHHHHHHHHHHHHHHHHHHHHHHHHH---HTTTSS--STHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHc-c-cCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCcccCCCHHHHHHHH
Confidence 3455655554444444444555555554 1 2222222111222233344445555555 346777777999999999
Q ss_pred HHhhhhHHHhhHHhhcchhHHHHHHHHHHHhhhh
Q psy10759 126 FNALGGLIISLVLKHHDNITKIFSTSVSIVVTFV 159 (162)
Q Consensus 126 ~~A~gGl~va~v~KyadnI~K~fa~s~sivlt~~ 159 (162)
...+.|+..-.-.+.-++..+.+..++.+.|.++
T Consensus 96 ~s~l~GL~~~~~~~~~~e~~~l~~~ai~ifL~Gi 129 (131)
T PF08360_consen 96 MSLLDGLSQWYYEKDKEELEALYRKAIDIFLKGI 129 (131)
T ss_dssp HHHHHHHHHTTTSS-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhc
Confidence 9999999987666666788889999999998765
No 78
>PRK01844 hypothetical protein; Provisional
Probab=20.53 E-value=2.2e+02 Score=19.01 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHhhhhHHH-----HHHhhhc
Q psy10759 48 LIGFGQVILASVSSGFTSV-----YLERIYK 73 (162)
Q Consensus 48 ~~G~~~vl~~~~~Sg~AgV-----y~E~~lK 73 (162)
++.++.++++-+...+.|. |+||-+|
T Consensus 4 ~~~I~l~I~~li~G~~~Gff~ark~~~k~lk 34 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFFIARKYMMNYLQ 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554 4788888
No 79
>PF14146 DUF4305: Domain of unknown function (DUF4305)
Probab=20.37 E-value=94 Score=18.07 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=12.2
Q ss_pred cCchhHHHHHHHHhh
Q psy10759 115 GYDGLVLTDVLFNAL 129 (162)
Q Consensus 115 G~~~~~~~vi~~~A~ 129 (162)
|||.++++.+...+.
T Consensus 15 gw~f~t~ll~~~At~ 29 (38)
T PF14146_consen 15 GWDFWTILLIAFATF 29 (38)
T ss_pred cccHHHHHHHHHHHH
Confidence 799999998877654
Done!