Query psy10759
Match_columns 162
No_of_seqs 133 out of 496
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 17:48:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10759.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10759hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 83.7 0.35 1.2E-05 33.4 1.2 31 2-32 75-105 (110)
2 2i68_A Protein EMRE; transmemb 81.7 0.22 7.6E-06 36.1 -0.6 31 2-32 75-105 (137)
3 1m45_B IQ2, IQ2 motif from MYO 43.8 14 0.00047 18.6 1.7 17 134-150 2-18 (26)
4 4av3_A K(+)-stimulated pyropho 19.4 5E+02 0.017 23.7 8.7 83 56-141 304-392 (735)
5 2q7r_A Arachidonate 5-lipoxyge 13.0 3.9E+02 0.013 19.1 5.9 50 108-159 108-157 (161)
6 3hzq_A Large-conductance mecha 12.7 1.9E+02 0.0065 20.0 3.3 30 109-138 18-56 (114)
7 3bqo_B TERF1-interacting nucle 11.8 40 0.0014 17.2 -0.3 13 5-17 7-19 (26)
8 1ifk_A Inovirus; helical virus 11.5 2.3E+02 0.0077 16.8 2.9 27 116-142 22-48 (51)
9 1ifl_A Inovirus; helical virus 11.2 2.3E+02 0.0079 16.8 2.9 27 116-142 24-50 (53)
10 2jp3_A FXYD domain-containing 10.5 2E+02 0.007 18.0 2.6 22 109-138 7-28 (67)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=83.74 E-value=0.35 Score=33.42 Aligned_cols=31 Identities=10% Similarity=0.112 Sum_probs=27.1
Q ss_pred CCCccCCccchhHHHHHHHHHhhhhheeccC
Q psy10759 2 GSNTEWGSKSLKKVFSLGVLLFGIVLIQIDE 32 (162)
Q Consensus 2 g~~~L~r~lS~~QW~aL~lL~~Gv~l~q~~~ 32 (162)
|..++|.++|+.||+.+.+..+|+.+.+..+
T Consensus 75 ~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 75 SWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3457899999999999999999999988754
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=81.73 E-value=0.22 Score=36.11 Aligned_cols=31 Identities=10% Similarity=0.112 Sum_probs=20.6
Q ss_pred CCCccCCccchhHHHHHHHHHhhhhheeccC
Q psy10759 2 GSNTEWGSKSLKKVFSLGVLLFGIVLIQIDE 32 (162)
Q Consensus 2 g~~~L~r~lS~~QW~aL~lL~~Gv~l~q~~~ 32 (162)
|..+++.++|..||+.+.+..+|+.+.+..+
T Consensus 75 g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 75 SWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3457899999999999999999999987654
No 3
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=43.79 E-value=14 Score=18.61 Aligned_cols=17 Identities=35% Similarity=0.221 Sum_probs=14.1
Q ss_pred HhhHHhhcchhHHHHHH
Q psy10759 134 ISLVLKHHDNITKIFST 150 (162)
Q Consensus 134 va~v~KyadnI~K~fa~ 150 (162)
++..+||..|=.|+|..
T Consensus 2 isqaikylqnnikgfii 18 (26)
T 1m45_B 2 ISQAIKYLQNNIKGFII 18 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhccceEEE
Confidence 46678999999999964
No 4
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=19.37 E-value=5e+02 Score=23.66 Aligned_cols=83 Identities=13% Similarity=0.220 Sum_probs=40.4
Q ss_pred HHHHhhhhHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHH----HH-HHhcCCccccccCccccCch-hHHHHHHHHhh
Q psy10759 56 LASVSSGFTSVYLERIYKADGDDTLLIKNLQLSLLSIPISM----IN-VLLQDSDTVSQHGLFFGYDG-LVLTDVLFNAL 129 (162)
Q Consensus 56 ~~~~~Sg~AgVy~E~~lK~~~~~s~~~~N~qL~~~gi~~~~----~~-~~~~dg~~~~~~gff~G~~~-~~~~vi~~~A~ 129 (162)
..+.+.+.-|+++=+.-| +.+...-..|.+++.-.+.... +. .++++-......+ ..+++ ..|..++.-.+
T Consensus 304 ~~gii~SiiG~~~v~~~~-~~~~~~~~l~~~~~~s~~~s~i~~~~~~~~~l~~~~~~~~~~--~~~~~~~~f~~~~iGlv 380 (735)
T 4av3_A 304 LVGLGCSMLGILYVIVKK-PSDNPQRELNISLWTSALLTVVLTAFLTYFYLKDLQGLDVLG--FRFGAISPWFSAIIGIF 380 (735)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHT--CTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhhheeeecc-cccchhHHHhhhHHhhHHHHHHHHHHHHHHHhhhhhhccccc--ccccchHHHHHHHHHHH
Confidence 345667778888877666 4444444445555443332221 11 2223321111111 11222 23445555667
Q ss_pred hhHHHhhHHhhc
Q psy10759 130 GGLIISLVLKHH 141 (162)
Q Consensus 130 gGl~va~v~Kya 141 (162)
.|+++..+.+|=
T Consensus 381 ~g~lI~~iTEYY 392 (735)
T 4av3_A 381 SGILIGFWAEYY 392 (735)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHheeee
Confidence 788888888763
No 5
>2q7r_A Arachidonate 5-lipoxygenase-activating protein; flap, mapeg, membrane protein, lipid transport; HET: 3CS; 4.00A {Homo sapiens} SCOP: f.56.1.1 PDB: 2q7m_A*
Probab=12.97 E-value=3.9e+02 Score=19.11 Aligned_cols=50 Identities=12% Similarity=0.262 Sum_probs=24.2
Q ss_pred cccCccccCchhHHHHHHHHhhhhHHHhhHHhhcchhHHHHHHHHHHHhhhh
Q psy10759 108 SQHGLFFGYDGLVLTDVLFNALGGLIISLVLKHHDNITKIFSTSVSIVVTFV 159 (162)
Q Consensus 108 ~~~gff~G~~~~~~~vi~~~A~gGl~va~v~KyadnI~K~fa~s~sivlt~~ 159 (162)
|..|++-| +.........++-|++-.++-+|.|.=.|.+-..++-..|++
T Consensus 108 R~~G~~~~--~l~l~~l~~~~l~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (161)
T 2q7r_A 108 STPGYIFG--KRIILFLFLMSVAGIFNYYLIFFFGSDFENYIATISTTISPL 157 (161)
T ss_dssp CCCCSCCC--HHHHHHHHHHHHHHHHHHHHHHHCC-----------------
T ss_pred hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh
Confidence 44455444 455566666788999999999999998888877666555544
No 6
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=12.69 E-value=1.9e+02 Score=20.01 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=22.0
Q ss_pred ccCccccCc---------hhHHHHHHHHhhhhHHHhhHH
Q psy10759 109 QHGLFFGYD---------GLVLTDVLFNALGGLIISLVL 138 (162)
Q Consensus 109 ~~gff~G~~---------~~~~~vi~~~A~gGl~va~v~ 138 (162)
..+++++|- ..++.+|.-.|++.++.|+|=
T Consensus 18 ~~~mlkeFK~Fi~rGNViDLAVgVIIG~AF~~IV~SlV~ 56 (114)
T 3hzq_A 18 GSHMLKEFKEFALKGNVLDLAIAVVMGAAFNKIICSLVE 56 (114)
T ss_dssp ---CCSSSSCCSSCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777764 478999999999999888774
No 7
>3bqo_B TERF1-interacting nuclear factor 2; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens}
Probab=11.77 E-value=40 Score=17.24 Aligned_cols=13 Identities=8% Similarity=-0.225 Sum_probs=9.8
Q ss_pred ccCCccchhHHHH
Q psy10759 5 TEWGSKSLKKVFS 17 (162)
Q Consensus 5 ~L~r~lS~~QW~a 17 (162)
=|+||-..-||.+
T Consensus 7 PLGrR~i~s~was 19 (26)
T 3bqo_B 7 PLGRRRVQSQWAS 19 (26)
T ss_pred ccccccccccccc
Confidence 3778888888865
No 8
>1ifk_A Inovirus; helical virus; 5.00A {Enterobacteria phage IF1} SCOP: h.1.4.1 PDB: 1nh4_A 2c0w_A 2c0x_A
Probab=11.47 E-value=2.3e+02 Score=16.78 Aligned_cols=27 Identities=19% Similarity=0.101 Sum_probs=20.2
Q ss_pred CchhHHHHHHHHhhhhHHHhhHHhhcc
Q psy10759 116 YDGLVLTDVLFNALGGLIISLVLKHHD 142 (162)
Q Consensus 116 ~~~~~~~vi~~~A~gGl~va~v~Kyad 142 (162)
+-.++|.++..-..+|+-+=++=|+++
T Consensus 22 ~ig~~W~vvv~vv~a~~gIKlFKKf~s 48 (51)
T 1ifk_A 22 MSGYAWALVVLVVGATVGIKLFKKFVS 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhheeeehhhhhHHHhhhcc
Confidence 345788888888888888777766654
No 9
>1ifl_A Inovirus; helical virus; 5.00A {Enterobacteria phage ike} SCOP: h.1.4.1
Probab=11.20 E-value=2.3e+02 Score=16.85 Aligned_cols=27 Identities=22% Similarity=0.181 Sum_probs=20.3
Q ss_pred CchhHHHHHHHHhhhhHHHhhHHhhcc
Q psy10759 116 YDGLVLTDVLFNALGGLIISLVLKHHD 142 (162)
Q Consensus 116 ~~~~~~~vi~~~A~gGl~va~v~Kyad 142 (162)
+-.++|.++..-..+|+-+=++=|+++
T Consensus 24 ~ig~~W~vvv~vv~a~~gIklFKKf~s 50 (53)
T 1ifl_A 24 LISQTWPVVTTVVVAGLVIRLFKKFSS 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhheeeechhhhhhhhhccc
Confidence 345788888888888888777766654
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=10.49 E-value=2e+02 Score=17.99 Aligned_cols=22 Identities=32% Similarity=0.735 Sum_probs=11.7
Q ss_pred ccCccccCchhHHHHHHHHhhhhHHHhhHH
Q psy10759 109 QHGLFFGYDGLVLTDVLFNALGGLIISLVL 138 (162)
Q Consensus 109 ~~gff~G~~~~~~~vi~~~A~gGl~va~v~ 138 (162)
...|.+.|..+ =+||++.+.|+
T Consensus 7 ~dpF~YDY~tL--------RigGLifA~vL 28 (67)
T 2jp3_A 7 GSPFYYDWESL--------QLGGLIFGGLL 28 (67)
T ss_dssp TSGGGGGGHHH--------HHHHHHHHHHH
T ss_pred CCCcccchHHh--------eecchhhHHHH
Confidence 35676666533 23555555554
Done!