Query psy10759
Match_columns 162
No_of_seqs 133 out of 496
Neff 6.9
Searched_HMMs 13730
Date Fri Aug 16 17:48:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10759.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10759hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hi7b1 a.29.15.1 (B:14-162) D 16.9 1.3E+02 0.0093 19.3 6.5 71 54-137 5-77 (149)
2 d1vf5c3 f.23.23.1 (C:250-286) 6.6 1.3E+02 0.0096 15.3 1.8 10 20-29 11-20 (37)
3 d2ccqa1 d.314.1.1 (A:11-109) N 6.6 85 0.0062 19.3 1.2 13 134-146 22-34 (99)
4 d1x9ba_ a.10.2.1 (A:) Hypothet 5.2 1.3E+02 0.0094 16.3 1.3 18 68-86 9-26 (53)
5 d1p4wa_ a.4.6.2 (A:) Transcrip 4.8 1.4E+02 0.01 17.4 1.4 25 7-31 20-44 (87)
6 d1rh5b_ f.23.28.1 (B:) Preprot 4.7 2.2E+02 0.016 15.7 2.1 18 129-146 39-56 (56)
7 d2hwna1 a.31.1.1 (A:5-43) cAMP 4.7 1.5E+02 0.011 15.1 1.3 12 62-73 26-37 (39)
8 d2o8ra1 a.7.15.1 (A:4-112) Pol 4.7 2.8E+02 0.021 16.5 3.0 28 67-94 15-44 (109)
9 d2f66c1 a.2.17.3 (C:142-206) V 4.6 1E+02 0.0073 17.6 0.5 9 139-147 3-11 (65)
10 d1pw4a_ f.38.1.1 (A:) Glycerol 4.4 3.1E+02 0.023 19.0 3.5 25 6-30 15-39 (447)
No 1
>d2hi7b1 a.29.15.1 (B:14-162) Disulfide bond formation protein DsbB {Escherichia coli [TaxId: 562]}
Probab=16.87 E-value=1.3e+02 Score=19.26 Aligned_cols=71 Identities=8% Similarity=0.162 Sum_probs=38.6
Q ss_pred HHHHHHhhhhHHHHHHhhhccCCCCch--HHHHHHHHHHHHHHHHHHHHhcCCccccccCccccCchhHHHHHHHHhhhh
Q psy10759 54 VILASVSSGFTSVYLERIYKADGDDTL--LIKNLQLSLLSIPISMINVLLQDSDTVSQHGLFFGYDGLVLTDVLFNALGG 131 (162)
Q Consensus 54 vl~~~~~Sg~AgVy~E~~lK~~~~~s~--~~~N~qL~~~gi~~~~~~~~~~dg~~~~~~gff~G~~~~~~~vi~~~A~gG 131 (162)
+...|+..=....|+|+.+. -.+.++ +.|- -|..-++..++..+.+.. ..........+..++.|
T Consensus 5 ~~~~s~~~l~~A~~~q~~~g-l~PC~LCi~QR~--~~~~i~~~~ll~~~~~~~----------~~~~~~~~~~~l~~~~G 71 (149)
T d2hi7b1 5 MAFTALALELTALWFQHVML-LKPCVLCIYERV--ALFGVLGAALIGAIAPKT----------PLRYVAMVIWLYSAFRG 71 (149)
T ss_dssp HHHHHHHHHHHHHHHHTTSC-CCCCSHHHHHHH--HHHTTTHHHHTTTTSSSS----------SCTHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHH--HHHHHHHHHHHHHHhhhh----------hHHHHHHHHHHHHHHHH
Confidence 34445444456689999988 566664 5553 333334444444333211 12234445556667777
Q ss_pred HHHhhH
Q psy10759 132 LIISLV 137 (162)
Q Consensus 132 l~va~v 137 (162)
+.++.-
T Consensus 72 ~~~a~~ 77 (149)
T d2hi7b1 72 VQLTYE 77 (149)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776653
No 2
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.57 E-value=1.3e+02 Score=15.26 Aligned_cols=10 Identities=20% Similarity=0.345 Sum_probs=3.9
Q ss_pred HHHhhhhhee
Q psy10759 20 VLLFGIVLIQ 29 (162)
Q Consensus 20 lL~~Gv~l~q 29 (162)
..++++++.|
T Consensus 11 ~F~~~v~laQ 20 (37)
T d1vf5c3 11 AFICLVMLAQ 20 (37)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333444433
No 3
>d2ccqa1 d.314.1.1 (A:11-109) N-glycanase 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.55 E-value=85 Score=19.34 Aligned_cols=13 Identities=38% Similarity=0.491 Sum_probs=10.3
Q ss_pred HhhHHhhcchhHH
Q psy10759 134 ISLVLKHHDNITK 146 (162)
Q Consensus 134 va~v~KyadnI~K 146 (162)
+....||.+||++
T Consensus 22 l~~L~ki~~NIl~ 34 (99)
T d2ccqa1 22 SKLLLTYADNILR 34 (99)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 4567899999886
No 4
>d1x9ba_ a.10.2.1 (A:) Hypothetical membrane protein Ta0354, soluble domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=5.22 E-value=1.3e+02 Score=16.28 Aligned_cols=18 Identities=17% Similarity=0.510 Sum_probs=13.5
Q ss_pred HHhhhccCCCCchHHHHHH
Q psy10759 68 LERIYKADGDDTLLIKNLQ 86 (162)
Q Consensus 68 ~E~~lK~~~~~s~~~~N~q 86 (162)
||-... ..+.+.+++|+.
T Consensus 9 FEs~IN-S~SK~~FV~NL~ 26 (53)
T d1x9ba_ 9 FESMIN-SPSKSVFVRNLN 26 (53)
T ss_dssp HHHHHH-SCCHHHHHHHHH
T ss_pred HHHHHc-CchHHHHHHhHH
Confidence 666666 566789999975
No 5
>d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
Probab=4.80 E-value=1.4e+02 Score=17.42 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=21.6
Q ss_pred CCccchhHHHHHHHHHhhhhheecc
Q psy10759 7 WGSKSLKKVFSLGVLLFGIVLIQID 31 (162)
Q Consensus 7 ~r~lS~~QW~aL~lL~~Gv~l~q~~ 31 (162)
.++||++|+--+.++..|....++.
T Consensus 20 ~~~LT~rE~~vl~ll~~G~s~~eIA 44 (87)
T d1p4wa_ 20 DKRLSPKESEVLRLFAEGFLVTEIA 44 (87)
T ss_dssp SSSCCHHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHH
Confidence 3579999999999999999887764
No 6
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.73 E-value=2.2e+02 Score=15.71 Aligned_cols=18 Identities=28% Similarity=0.261 Sum_probs=9.6
Q ss_pred hhhHHHhhHHhhcchhHH
Q psy10759 129 LGGLIISLVLKHHDNITK 146 (162)
Q Consensus 129 ~gGl~va~v~KyadnI~K 146 (162)
+-|.++-.++-+..||+|
T Consensus 39 ~IGf~I~li~~~i~~iik 56 (56)
T d1rh5b_ 39 IIGYIIHVPATYIKGILK 56 (56)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhcC
Confidence 344555555555555554
No 7
>d2hwna1 a.31.1.1 (A:5-43) cAMP-dependent protein kinase type II regulatory subunit {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.69 E-value=1.5e+02 Score=15.10 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=9.4
Q ss_pred hhHHHHHHhhhc
Q psy10759 62 GFTSVYLERIYK 73 (162)
Q Consensus 62 g~AgVy~E~~lK 73 (162)
.||.-||+++.+
T Consensus 26 ~faa~YF~~L~~ 37 (39)
T d2hwna1 26 DFAVEYFTRLRE 37 (39)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 467889988876
No 8
>d2o8ra1 a.7.15.1 (A:4-112) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}
Probab=4.66 E-value=2.8e+02 Score=16.50 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=21.3
Q ss_pred HHHhhhcc--CCCCchHHHHHHHHHHHHHH
Q psy10759 67 YLERIYKA--DGDDTLLIKNLQLSLLSIPI 94 (162)
Q Consensus 67 y~E~~lK~--~~~~s~~~~N~qL~~~gi~~ 94 (162)
++|++|.. +.+.|+..|==+|++++-=+
T Consensus 15 Fn~RVL~~a~d~~~PllER~~Fl~I~ssNL 44 (109)
T d2o8ra1 15 FNERVLMEAADRTLPVYDRIKFLSIFSSNL 44 (109)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhhH
Confidence 68888874 56789999988888777533
No 9
>d2f66c1 a.2.17.3 (C:142-206) Vacuolar protein sorting-associated protein 37, VPS37 (SRN2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.55 E-value=1e+02 Score=17.65 Aligned_cols=9 Identities=33% Similarity=0.021 Sum_probs=6.6
Q ss_pred hhcchhHHH
Q psy10759 139 KHHDNITKI 147 (162)
Q Consensus 139 KyadnI~K~ 147 (162)
||.|+++|.
T Consensus 3 ky~~~~Lk~ 11 (65)
T d2f66c1 3 KYGDIALKK 11 (65)
T ss_dssp THHHHHHHH
T ss_pred ccchHHHHH
Confidence 778887764
No 10
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.38 E-value=3.1e+02 Score=19.04 Aligned_cols=25 Identities=8% Similarity=-0.098 Sum_probs=17.8
Q ss_pred cCCccchhHHHHHHHHHhhhhheec
Q psy10759 6 EWGSKSLKKVFSLGVLLFGIVLIQI 30 (162)
Q Consensus 6 L~r~lS~~QW~aL~lL~~Gv~l~q~ 30 (162)
..|+..+.||.-+.+++++......
T Consensus 15 ~~~~~~~~~w~i~~~~~~~~~~~~~ 39 (447)
T d1pw4a_ 15 IDPTYRRLRWQIFLGIFFGYAAYYL 39 (447)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhHHHHHHHHHHHHHHHHHH
Confidence 3456667899998888887666543
Done!