RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10759
         (162 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.1 bits (69), Expect = 0.093
 Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 5/26 (19%)

Query: 82  IKNLQLSL-L----SIPISMINVLLQ 102
           +K LQ SL L    S P   I   ++
Sbjct: 22  LKKLQASLKLYADDSAPALAIKATME 47


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.9 bits (64), Expect = 0.99
 Identities = 37/158 (23%), Positives = 52/158 (32%), Gaps = 63/158 (39%)

Query: 32  ESASES-ISRKSDNGN-QLIG-F-GQVILASVSSGFTSVYLE------RIYKADGDDTLL 81
           +  S S + R    GN QL+  F GQ        G T  Y E      + Y     D  L
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQ--------GNTDDYFEELRDLYQTYHVLVGD--L 187

Query: 82  IKN-----LQLS-------------------------------LLSIPISM-INVLLQDS 104
           IK       +L                                LLSIPIS  +  ++Q +
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLA 247

Query: 105 D-TVSQHGLFFGYDGLVLTDVLFNALG---GLIISLVL 138
              V+   L  G+    L   L  A G   GL+ ++ +
Sbjct: 248 HYVVTAKLL--GFTPGELRSYLKGATGHSQGLVTAVAI 283



 Score = 27.7 bits (61), Expect = 2.5
 Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 21/91 (23%)

Query: 80  LLIKNLQLSLLSIPISMINVLLQDSDTVSQHGLFFGYDGLVLTDVLFNALGGLIISLV-L 138
           L I NL    +   ++  N  L     V    L  G   LV++        G   SL  L
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEI-SLVNGAKNLVVS--------GPPQSLYGL 389

Query: 139 KHH---------DNITKI-FST-SVSIVVTF 158
                        + ++I FS   +     F
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.139    0.377 

Gapped
Lambda     K      H
   0.267   0.0788    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,283,935
Number of extensions: 126340
Number of successful extensions: 233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 11
Length of query: 162
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 76
Effective length of database: 4,300,587
Effective search space: 326844612
Effective search space used: 326844612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)