RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10759
         (162 letters)



>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal
          domain {Ureaplasma urealyticum [TaxId: 2130]}
          Length = 139

 Score = 23.9 bits (51), Expect = 9.2
 Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 49 IGFGQVILASVSSGFTSVYLERI--YKADGDDTLLIK 83
          IG+ + I   + +G T+  + R+   +      L+ K
Sbjct: 1  IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.139    0.377 

Gapped
Lambda     K      H
   0.267   0.0537    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 527,934
Number of extensions: 21215
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 5
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.1 bits)