BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10760
(356 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VK9|A Chain A, Crystal Structure Of The Catalytic Domain Of Alpha-Toxin
From Clostridium Novyi
Length = 551
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 164 TPLHGFYTQDAILTSLWPLSHMSDLLRYVTLYKYGGTYLDLDFI 207
L +Y Q+ I T+ L+ SD+LR L KYGG Y DLDF+
Sbjct: 247 NKLKSYYYQELIQTN--NLAAASDILRIAILKKYGGVYCDLDFL 288
>pdb|2BVL|A Chain A, Crystal Structure Of The Catalytic Domain Of Toxin B From
Clostridium Difficile In Complex With Udp, Glc And
Manganese Ion
Length = 543
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 161 FQNTPLHGFYTQDAILTSLWPLSHMSDLLRYVTLYKYGGTYLDLDFI 207
F+N Y Q+ L W L+ SD+LR L + GG YLD+D +
Sbjct: 246 FKNGESFNLYEQE--LVERWNLAAASDILRISALKEIGGMYLDVDML 290
>pdb|2BVM|A Chain A, Crystal Structure Of The Catalytic Domain Of Toxin B From
Clostridium Difficile In Complex With Udp, Glc And
Manganese Ion
Length = 542
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 161 FQNTPLHGFYTQDAILTSLWPLSHMSDLLRYVTLYKYGGTYLDLDFI 207
F+N Y Q+ L W L+ SD+LR L + GG YLD+D +
Sbjct: 246 FKNGESFNLYEQE--LVERWNLAAASDILRISALKEIGGMYLDVDML 290
>pdb|2VKD|A Chain A, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Manganese Ion
pdb|2VKD|B Chain B, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Manganese Ion
pdb|2VKD|C Chain C, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Manganese Ion
pdb|2VKH|A Chain A, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Calcium Ion
pdb|2VKH|B Chain B, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Calcium Ion
pdb|2VKH|C Chain C, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Calcium Ion
pdb|2VL8|A Chain A, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp,
Castanospermine And Calcium Ion
pdb|2VL8|B Chain B, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp,
Castanospermine And Calcium Ion
pdb|2VL8|C Chain C, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp,
Castanospermine And Calcium Ion
Length = 546
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 161 FQNTPLHGFYTQDAILTSLWPLSHMSDLLRYVTLYKYGGTYLDLDFI 207
F + L Y Q+ L W L+ SD+LR L + GG YLD+D +
Sbjct: 246 FADEDLVRLYNQE--LVERWNLAAASDILRISMLKEDGGVYLDVDML 290
>pdb|4DMV|A Chain A, Crystal Structure Of The Gt Domain Of Clostridium
Difficile Toxin A
pdb|4DMW|A Chain A, Crystal Structure Of The Gt Domain Of Clostridium
Difficile Toxin A (Tcda) In Complex With Udp And
Manganese
Length = 556
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 151 HIVQVDLGRYFQNTPLHGFYTQDAILTSLWPLSHMSDLLRYVTLYKYGGTYLDLDFI 207
H + + F L Y+Q+ L + L+ SD++R + L +GG YLD+D +
Sbjct: 250 HGIDIRANSLFTEQELLNIYSQE--LLNRGNLAAASDIVRLLALKNFGGVYLDVDML 304
>pdb|3SRZ|A Chain A, Clostridium Difficile Toxin A (Tcda) Glucolsyltransferase
Domain Bound To Udp-Glucose
pdb|3SS1|A Chain A, Clostridium Difficile Toxin A (Tcda) Glucolsyltransferase
Domain
Length = 555
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 151 HIVQVDLGRYFQNTPLHGFYTQDAILTSLWPLSHMSDLLRYVTLYKYGGTYLDLDFI 207
H + + F L Y+Q+ L + L+ SD++R + L +GG YLD+D +
Sbjct: 235 HGIDIRANSLFTEQELLNIYSQE--LLNRGNLAAASDIVRLLALKNFGGVYLDVDML 289
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,974,336
Number of Sequences: 62578
Number of extensions: 448774
Number of successful extensions: 1024
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1017
Number of HSP's gapped (non-prelim): 7
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)