Query psy10760
Match_columns 356
No_of_seqs 254 out of 989
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 17:50:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10760.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10760hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1928|consensus 100.0 2.1E-53 4.6E-58 410.7 19.5 262 85-356 127-400 (409)
2 PF04572 Gb3_synth: Alpha 1,4- 100.0 1.5E-32 3.2E-37 236.8 9.2 125 232-356 1-126 (135)
3 PF04488 Gly_transf_sug: Glyco 99.7 4.5E-18 9.7E-23 139.7 5.3 93 105-215 1-96 (103)
4 PF05704 Caps_synth: Capsular 99.7 1.1E-16 2.4E-21 153.5 11.3 136 84-252 43-190 (276)
5 COG3774 OCH1 Mannosyltransfera 99.6 1.2E-15 2.5E-20 149.2 7.5 192 84-335 81-281 (347)
6 PF12919 TcdA_TcdB: TcdA/TcdB 97.8 5.3E-06 1.1E-10 85.7 0.2 46 161-208 187-232 (514)
7 cd02537 GT8_Glycogenin Glycoge 95.9 0.098 2.1E-06 49.1 11.3 145 106-270 14-168 (240)
8 cd00505 Glyco_transf_8 Members 95.2 0.92 2E-05 42.4 15.3 153 104-271 12-199 (246)
9 cd04194 GT8_A4GalT_like A4GalT 95.0 0.36 7.8E-06 45.0 11.9 92 106-215 13-115 (248)
10 PRK15382 non-LEE encoded effec 94.1 0.11 2.4E-06 49.1 5.9 72 186-257 182-280 (326)
11 PRK15383 type III secretion sy 93.9 0.13 2.8E-06 48.6 5.9 72 186-257 190-288 (335)
12 PRK15384 type III secretion sy 93.6 0.16 3.5E-06 48.0 5.9 72 186-257 187-285 (336)
13 cd06429 GT8_like_1 GT8_like_1 91.7 0.84 1.8E-05 43.6 8.3 136 107-248 12-175 (257)
14 PRK15171 lipopolysaccharide 1, 90.8 0.67 1.5E-05 45.9 6.9 97 103-215 35-140 (334)
15 cd06914 GT8_GNT1 GNT1 is a fun 90.8 0.68 1.5E-05 44.8 6.7 157 188-355 81-255 (278)
16 PF07801 DUF1647: Protein of u 88.3 2.5 5.5E-05 36.9 7.7 76 75-160 48-124 (142)
17 PF01501 Glyco_transf_8: Glyco 85.0 0.71 1.5E-05 42.0 2.7 61 188-248 87-179 (250)
18 PLN00176 galactinol synthase 83.9 1.2 2.6E-05 44.3 3.9 127 108-249 39-206 (333)
19 cd06432 GT8_HUGT1_C_like The C 83.2 4.1 8.9E-05 38.5 7.2 107 88-216 2-116 (248)
20 cd06431 GT8_LARGE_C LARGE cata 81.7 4.8 0.0001 38.9 7.1 95 104-216 12-118 (280)
21 PLN02742 Probable galacturonos 81.4 7.4 0.00016 40.9 8.7 32 185-216 338-373 (534)
22 COG1442 RfaJ Lipopolysaccharid 77.8 7.3 0.00016 38.6 7.1 93 108-215 17-117 (325)
23 PLN02718 Probable galacturonos 76.9 6.5 0.00014 41.9 6.7 32 185-216 403-438 (603)
24 PF03407 Nucleotid_trans: Nucl 74.9 19 0.0004 32.6 8.5 101 184-296 54-172 (212)
25 PLN02523 galacturonosyltransfe 70.4 12 0.00025 39.7 6.6 33 184-216 361-397 (559)
26 PLN02829 Probable galacturonos 64.3 14 0.00031 39.6 5.9 113 85-216 357-477 (639)
27 cd06430 GT8_like_2 GT8_like_2 47.5 7.2 0.00016 38.3 0.4 29 188-216 85-117 (304)
28 PF12919 TcdA_TcdB: TcdA/TcdB 46.6 37 0.0008 35.8 5.5 40 86-131 1-40 (514)
29 PF12138 Spherulin4: Spherulat 39.6 72 0.0016 30.4 5.9 78 111-204 20-114 (253)
30 PLN02659 Probable galacturonos 33.9 19 0.00041 38.0 1.0 33 184-216 328-364 (534)
31 PLN02870 Probable galacturonos 33.7 19 0.00042 37.9 1.1 33 184-216 327-363 (533)
32 PLN02867 Probable galacturonos 31.5 21 0.00046 37.6 0.9 31 185-215 330-364 (535)
33 PF15048 OSTbeta: Organic solu 25.5 64 0.0014 27.6 2.6 17 11-27 38-54 (125)
34 PLN02910 polygalacturonate 4-a 23.5 32 0.0007 37.0 0.6 113 85-215 371-494 (657)
35 PLN02769 Probable galacturonos 22.4 35 0.00075 36.8 0.6 33 184-216 436-472 (629)
36 PF13453 zf-TFIIB: Transcripti 20.0 33 0.00072 23.1 -0.1 10 196-205 24-33 (41)
No 1
>KOG1928|consensus
Probab=100.00 E-value=2.1e-53 Score=410.73 Aligned_cols=262 Identities=29% Similarity=0.470 Sum_probs=220.0
Q ss_pred CCCcEEEEeeCCCCCCCCCCCHHHHHHHHHHHHHCCCCeEEEEEcccCCCCC---CchHHHH-hhcCCCeEEEecccccc
Q psy10760 85 PDNSIFFLETSCTHADGVELTLRQACSIESAAMMNPGVQVYVVVIASVRNRT---RNPLIDR-LYEYQNVHIVQVDLGRY 160 (356)
Q Consensus 85 ~~~~IfF~ets~~~~~~~~l~~rq~~aIeSaar~nP~~~V~ll~~~~~~~~~---~~~~i~~-L~~ypnv~i~~ld~~~~ 160 (356)
-..+||+.|+|.+. .++.|++||||||+++||+++|.|+++...+.+. ..++++. |+..+++.-.+.++.+.
T Consensus 127 c~~~~fm~w~S~~~----~f~~r~~~sIESa~k~hP~~cv~vls~t~ds~~~~s~~kp~~~~~lsv~~v~~~lp~llk~t 202 (409)
T KOG1928|consen 127 CSVRFFMTWISPAE----SFGVREMCSIESAFKTHPEGCVVVLSKTMDSPNGYSILKPFLDSGLSVIAVTPDLPFLLKDT 202 (409)
T ss_pred CceeEEEEeccccc----CCChhhhhhhHHHHhhCCCceEEEEEccccCCCCccccccHhHhhhhhcccccCchhhHhhC
Confidence 46789999999997 9999999999999999999999999984211111 1245554 36666665555666666
Q ss_pred ccCCCccccchhhhhccCCC-cchhhhhHHHHHHHHHhCcEEEecCcccccccccccccee-ccc---CCcccceEEEec
Q psy10760 161 FQNTPLHGFYTQDAILTSLW-PLSHMSDLLRYVTLYKYGGTYLDLDFIVIKSLESLHNYAG-AES---SSVVAAGVIHLD 235 (356)
Q Consensus 161 ~~~tpl~~w~~~~~~~~~~~-~~~h~SD~~R~~~L~k~GGiYlD~Dv~~lr~l~~l~~~~g-~e~---~~~l~n~v~~~~ 235 (356)
..+++++.|+. +....+++ ..++.||+.|+++||||||||||||||+||++..++|.+| .+. ...+|||||++.
T Consensus 203 ~~e~~l~~~k~-g~~~~~~~~l~~~lSdl~RLA~LyKYGGvYLDTDvIvLksl~~l~N~ig~~~~~~~~~~lnnavl~F~ 281 (409)
T KOG1928|consen 203 PGETWLERWKD-GRLDPGKIPLLQNLSDLSRLALLYKYGGVYLDTDVIVLKSLSNLRNVIGVDPATQAWTRLNNAVLIFD 281 (409)
T ss_pred ccccHHHHHHh-cccCCCcccchhhHHHHHHHHHHHHhCCEEeeccEEEecccccccccccccchhhHHHhhcCceeecC
Confidence 66666666665 33444444 4456999999999999999999999999999999999888 332 357999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHcCCCCCCC---cceeecceEEcCCCceeccCCcchhhhcccCC
Q psy10760 236 KDHWLSGAALRELRDNFKTTEWGANGPGVLTRLLKAECKPQSYAH---NIISCRNFTIYPPRFFYPVHWEHWADYLNETN 312 (356)
Q Consensus 236 ~~hp~l~~~l~~~~~~y~~~~w~~~GP~llt~vl~~~~~~~~~~~---~~~~~~~v~ilP~~~FyPi~~~~~~~~f~~~~ 312 (356)
++|||+.+||+++..+||+.+||.+||.++|||++++|+..+.+- .+..|.+|..++++.|||+||.+|+++|..
T Consensus 282 k~Hpfl~~cl~eF~~tfNg~~WG~NGP~LvTRVakr~c~~~~~~~~i~~p~~f~~vn~~~i~~fy~iP~~ew~~~~~~-- 359 (409)
T KOG1928|consen 282 KNHPFLLECLREFALTYNGNIWGHNGPYLVTRVAKRWCNTKNYNLTILPPSAFYPVNWLEIQAFYAIPWTEWDRKFVD-- 359 (409)
T ss_pred CCCHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHhCCCCccceecCccccCceeeeccccccccchhHhhhhhhH--
Confidence 999999999999999999999999999999999999999987652 556789999999999999999999999954
Q ss_pred cccccccCCceEEEeeeCCCcCCCccccCChHHHHHHHHhcCCC
Q psy10760 313 APATMSLFRDSYALHVWNSFTKRVPVKLGSEQPYAQIARRYCPR 356 (356)
Q Consensus 313 ~~~~~~~~~~sy~iHlwn~~~~~~~i~~gs~~~y~~La~~~CP~ 356 (356)
++.....++||++|+||+.+++.+++.|| ++++|+++|||+
T Consensus 360 -~~~~~~~k~Sy~vHlWNk~S~k~~ie~gS--~~~~L~s~~Cp~ 400 (409)
T KOG1928|consen 360 -EETLKMLKNSYAVHLWNKFSRKLKIEEGS--AVAKLVSKHCPR 400 (409)
T ss_pred -HHHHHHhccCeEEEeeeccccccccccch--HHHHHHHhcCCc
Confidence 34557899999999999999999999998 999999999996
No 2
>PF04572 Gb3_synth: Alpha 1,4-glycosyltransferase conserved region; InterPro: IPR007652 The glycosphingolipids (GSL) form part of eukaryotic cell membranes. They consist of a hydrophilic carbohydrate moiety linked to a hydrophobic ceramide tail embedded within the lipid bilayer of the membrane. Lactosylceramide, Gal1,4Glc1Cer (LacCer), is the common synthetic precursor to the majority of GSL found in vertebrates. Alpha 1.4-glycosyltransferases utilise UDP donors and transfer the sugar to a beta-linked acceptor []. No function has been yet assigned to this domain ; GO: 0008378 galactosyltransferase activity, 0005795 Golgi stack
Probab=99.97 E-value=1.5e-32 Score=236.78 Aligned_cols=125 Identities=34% Similarity=0.819 Sum_probs=118.2
Q ss_pred EEecCCCHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHcCCCCCCC-cceeecceEEcCCCceeccCCcchhhhccc
Q psy10760 232 IHLDKDHWLSGAALRELRDNFKTTEWGANGPGVLTRLLKAECKPQSYAH-NIISCRNFTIYPPRFFYPVHWEHWADYLNE 310 (356)
Q Consensus 232 ~~~~~~hp~l~~~l~~~~~~y~~~~w~~~GP~llt~vl~~~~~~~~~~~-~~~~~~~v~ilP~~~FyPi~~~~~~~~f~~ 310 (356)
|+++++|||++++|++++++|+++.|+.+||.++|||++++|+..+... ....|+|++|+|+++||||+|.+|++||++
T Consensus 1 m~F~~~H~~~~~~l~df~~~Y~~~~w~~nGP~lltRVl~~~C~~~~~~~~~~~~C~~~~vlp~~~FYPI~~~~~~~~F~~ 80 (135)
T PF04572_consen 1 MAFDKGHPFLWECLEDFVKNYDGNKWGHNGPDLLTRVLKKFCNTENFKDMEDNRCRGFSVLPPEAFYPIPYQDWKRFFEP 80 (135)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCcchhcccCcHHHHHHHHHHhcCCCccccccccCCCeEEcCccceeccChhHhHHHhcC
Confidence 6789999999999999999999999999999999999999999987765 566899999999999999999999999999
Q ss_pred CCcccccccCCceEEEeeeCCCcCCCccccCChHHHHHHHHhcCCC
Q psy10760 311 TNAPATMSLFRDSYALHVWNSFTKRVPVKLGSEQPYAQIARRYCPR 356 (356)
Q Consensus 311 ~~~~~~~~~~~~sy~iHlwn~~~~~~~i~~gs~~~y~~La~~~CP~ 356 (356)
...++.+...++||+||+||+++++.++++||+++|++||++|||+
T Consensus 81 ~~~~~~~~~~~~Sy~vHlWN~~s~~~~i~~~S~~~y~~La~~~CP~ 126 (135)
T PF04572_consen 81 PSTEEVMEWLKNSYAVHLWNKMSSGLPIEPGSNTLYAKLARQHCPR 126 (135)
T ss_pred CcchHHHHHhhCceEEEecccccCCccccCCcHHHHHHHHHHhChH
Confidence 9888877788899999999999999999999999999999999995
No 3
>PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif. The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases [].
Probab=99.72 E-value=4.5e-18 Score=139.68 Aligned_cols=93 Identities=40% Similarity=0.613 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHCCCCeEEEEEcccCCCCCCchHHHHhhcCCCeEEEeccccccccCCC-ccccchhhhhcc-CCCcc
Q psy10760 105 TLRQACSIESAAMMNPGVQVYVVVIASVRNRTRNPLIDRLYEYQNVHIVQVDLGRYFQNTP-LHGFYTQDAILT-SLWPL 182 (356)
Q Consensus 105 ~~rq~~aIeSaar~nP~~~V~ll~~~~~~~~~~~~~i~~L~~ypnv~i~~ld~~~~~~~tp-l~~w~~~~~~~~-~~~~~ 182 (356)
+.++.|+|||++++||++++.+|++... |+.+...|++.++.++| +.++|. .+.. .....
T Consensus 1 P~~~~~~i~s~~~~nP~~~~~~~~d~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~ 62 (103)
T PF04488_consen 1 PERFQCSIESWARHNPDYEYILWTDESD----------------NVRVKRIDIEFLFEKTPWFLELYN--KWEPGRYPNY 62 (103)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEECCCc----------------chhhhHHHHHHHHhCChHHHHHHh--hhhcccccch
Confidence 4689999999999999999999887431 45555666666666666 222332 1111 23356
Q ss_pred hhhhhHHHHHHHHHhCcEEEecCccccccc-ccc
Q psy10760 183 SHMSDLLRYVTLYKYGGTYLDLDFIVIKSL-ESL 215 (356)
Q Consensus 183 ~h~SD~~R~~~L~k~GGiYlD~Dv~~lr~l-~~l 215 (356)
+++||++|+++||++||||+|+|++|+||+ +.+
T Consensus 63 ~~~sD~~R~~~L~~~GGiY~D~D~~~~rpl~~~~ 96 (103)
T PF04488_consen 63 AHKSDLLRYLVLYKYGGIYLDLDVICLRPLDDPW 96 (103)
T ss_pred HHHHHHHHHHHHHHcCcEEEeCccccCcchhhhh
Confidence 889999999999999999999999999999 776
No 4
>PF05704 Caps_synth: Capsular polysaccharide synthesis protein; InterPro: IPR008441 This entry consists of several capsular polysaccharide proteins. Capsular polysaccharide (CPS) is a major virulence factor in Streptococcus pneumoniae. This family is often transcribed with putative glycosyl transferases to give rise to bifunctional proteins [].
Probab=99.69 E-value=1.1e-16 Score=153.47 Aligned_cols=136 Identities=18% Similarity=0.176 Sum_probs=104.5
Q ss_pred CCCCcEEEEeeCCCCCCCCCCCHHHHHHHHHHHHHCCCCeEEEEEcccCCCCCCchHHHHhhcCCCeEEEeccccccccC
Q psy10760 84 VPDNSIFFLETSCTHADGVELTLRQACSIESAAMMNPGVQVYVVVIASVRNRTRNPLIDRLYEYQNVHIVQVDLGRYFQN 163 (356)
Q Consensus 84 ~~~~~IfF~ets~~~~~~~~l~~rq~~aIeSaar~nP~~~V~ll~~~~~~~~~~~~~i~~L~~ypnv~i~~ld~~~~~~~ 163 (356)
..+++||+.|..|.. +++.....+++|+.+.+|+++|+|++.. .++..-.+| ++
T Consensus 43 ~~~k~IW~~W~QG~e----~aP~~Vk~ci~s~~k~~~~~~Vi~lt~~---------Ni~~Yv~~P----------~~--- 96 (276)
T PF05704_consen 43 TNEKIIWVCWWQGEE----NAPEIVKKCINSWRKNAPDYEVILLTED---------NIKDYVDIP----------DF--- 96 (276)
T ss_pred CCCCcEEEEECCCcc----ccCHHHHHHHHHHHHHCCCCeEEEEChH---------HHHHHcCCc----------hh---
Confidence 356779999999987 8889888899999999999999998752 122211222 11
Q ss_pred CCccccchhhhhccCCCcchhhhhHHHHHHHHHhCcEEEecCcccccccccc---ccceeccc------C---CcccceE
Q psy10760 164 TPLHGFYTQDAILTSLWPLSHMSDLLRYVTLYKYGGTYLDLDFIVIKSLESL---HNYAGAES------S---SVVAAGV 231 (356)
Q Consensus 164 tpl~~w~~~~~~~~~~~~~~h~SD~~R~~~L~k~GGiYlD~Dv~~lr~l~~l---~~~~g~e~------~---~~l~n~v 231 (356)
...++..|....+|+||++|+.+|++|||||+|+++++.++++.. ..++.... . ....|.+
T Consensus 97 -------i~~k~~~g~i~~a~~SDilR~~LL~~yGGvWiDatv~~t~~l~~~~~~~~ff~~~~~~~~~~~~~~~~w~~~f 169 (276)
T PF05704_consen 97 -------ILEKYEKGKISPAHFSDILRLALLYKYGGVWIDATVYLTKPLDDEIFDSDFFSFSRPDKDYNPISISSWTNFF 169 (276)
T ss_pred -------HHHHHHcCCCchhHHHHHHHHHHHHHcCcEEeCCceEECCchhHHHhcCCeeEEeccCcCcccchHHHhHhhh
Confidence 123567777788999999999999999999999999999999876 34444321 1 1235559
Q ss_pred EEecCCCHHHHHHHHHHHHhc
Q psy10760 232 IHLDKDHWLSGAALRELRDNF 252 (356)
Q Consensus 232 ~~~~~~hp~l~~~l~~~~~~y 252 (356)
|++.+|||+++.+.+.+.+-.
T Consensus 170 i~a~~~n~~~~~~~~~~~~yw 190 (276)
T PF05704_consen 170 IAAKKGNPFIKFWRDLLLEYW 190 (276)
T ss_pred eeECCCCHHHHHHHHHHHHHH
Confidence 999999999999999887543
No 5
>COG3774 OCH1 Mannosyltransferase OCH1 and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.60 E-value=1.2e-15 Score=149.25 Aligned_cols=192 Identities=21% Similarity=0.275 Sum_probs=136.7
Q ss_pred CCCCcEEEEeeCCCCCCCCCCCHHHHHHHHHHHHHCCCCeEEEEEcccCCCCCCchHHHHhhcCCCeEEEeccccccccC
Q psy10760 84 VPDNSIFFLETSCTHADGVELTLRQACSIESAAMMNPGVQVYVVVIASVRNRTRNPLIDRLYEYQNVHIVQVDLGRYFQN 163 (356)
Q Consensus 84 ~~~~~IfF~ets~~~~~~~~l~~rq~~aIeSaar~nP~~~V~ll~~~~~~~~~~~~~i~~L~~ypnv~i~~ld~~~~~~~ 163 (356)
.-++.||..|++.. ++..-.-+.++++..||+++..++++.. ...+++ ..|
T Consensus 81 ~IPk~IwQTw~~~~------~P~~~~~~~~~~~~~~PdY~yi~~tD~~-----~~~~v~--h~~---------------- 131 (347)
T COG3774 81 AIPKIIWQTWSNEK------FPEYVNKLFNRWRSLHPDYRYILWTDEM-----REPLVE--HDY---------------- 131 (347)
T ss_pred hHHHHHHHHhcCCC------CCHHHHHHHHHHHhcCCCeEEEecchhh-----hhHHHh--hcc----------------
Confidence 35778998855443 6778888899999999999999877643 111221 122
Q ss_pred CCccccchhhhhccCCCcchhhhhHHHHHHHHHhCcEEEecCccccccccccc----cceecccCCcccceEEEecCCCH
Q psy10760 164 TPLHGFYTQDAILTSLWPLSHMSDLLRYVTLYKYGGTYLDLDFIVIKSLESLH----NYAGAESSSVVAAGVIHLDKDHW 239 (356)
Q Consensus 164 tpl~~w~~~~~~~~~~~~~~h~SD~~R~~~L~k~GGiYlD~Dv~~lr~l~~l~----~~~g~e~~~~l~n~v~~~~~~hp 239 (356)
.|+. .+++.-++. +-++|++||.+|++|||||+|+|.-|++++|++- .++.......++|.+|++.|+||
T Consensus 132 ----~~~~-~ay~~yp~~-~~raD~~RYfvL~~~GGIY~DiD~~~~~~id~~l~~~~~~l~~~~~~~v~n~~m~s~p~hp 205 (347)
T COG3774 132 ----PWFL-DAYRRYPYG-ALRADFWRYFVLYHYGGIYLDIDTGLVKPIDPLLDDAEAWLRRTIPLGVGNGVMGSAPGHP 205 (347)
T ss_pred ----HHHH-HHHHccCcc-hhhhhhHhheeeeccCcEEEeCCcccccCCcccccchHHHhhhcCCCcccchhhccCCCCc
Confidence 1222 234444432 3579999999999999999999999999999982 46677778899999999999999
Q ss_pred HHHHHHHHHHHhcC-----CCCccccchHHHHHHHHHHcCCCCCCCcceeecceEEcCCCceeccCCcchhhhcccCCcc
Q psy10760 240 LSGAALRELRDNFK-----TTEWGANGPGVLTRLLKAECKPQSYAHNIISCRNFTIYPPRFFYPVHWEHWADYLNETNAP 314 (356)
Q Consensus 240 ~l~~~l~~~~~~y~-----~~~w~~~GP~llt~vl~~~~~~~~~~~~~~~~~~v~ilP~~~FyPi~~~~~~~~f~~~~~~ 314 (356)
+++.+++.+..+.. -.++..+||..++.+.+++... .++..|..+.-.+. .++
T Consensus 206 ~~~~~i~~~~~~~~~~~p~~ti~~stGp~iL~~i~~~~~~~---------------~~~~~~~~~~~~~~-~~~------ 263 (347)
T COG3774 206 FLKKMIERLPYNIIWKFPYWTIQASTGPLILSEIHSAYTVQ---------------TPPASFDAVNLSDP-AFT------ 263 (347)
T ss_pred hHHHHHHHhhhccccCCCceeeecCCCChhHHHHHHHhhcc---------------CCccccceeEecch-hhh------
Confidence 99999999982211 2366789999999999987321 14555544433221 111
Q ss_pred cccccCCceEEEeeeCCCcCC
Q psy10760 315 ATMSLFRDSYALHVWNSFTKR 335 (356)
Q Consensus 315 ~~~~~~~~sy~iHlwn~~~~~ 335 (356)
...+++|..|.+++.|..
T Consensus 264 ---~~~~~~~~~~~~g~~W~h 281 (347)
T COG3774 264 ---NKRNNQYFLHTGGSSWTH 281 (347)
T ss_pred ---hhccceEEEeecCCcccc
Confidence 122389999999999953
No 6
>PF12919 TcdA_TcdB: TcdA/TcdB catalytic glycosyltransferase domain; InterPro: IPR024770 Toxins A (TcdA) and B (TcdB) of Clostridium difficile belong to the family of clostridial glucosylating toxins. These toxins glucosylate small GTPases of Rho and Ras families, inhibiting the signalling and regulatory functions of these switch proteins. After receptor-binding, the toxins are endocytosed to reach acidic endosomal compartments from where the toxins are translocated into the cytosol []. TcdB has been shown to consist of a N-terminal glucosyltransferase domain (GTD), responsible for the biological effects of the toxin, a cysteine protease domain (CPD), responsible for autocatalytic cleavage, a hydrophobic region (HR), which has been suggested to be involved in toxin translocation, and a C-terminal repetitive domain involved in receptor binding. The pore-forming region of toxin B has been described to be in a region in the middle of the protein, within amino acid residues 830 and 990 []. This entry represents the N-terminal glucosyltransferase domain from TcdA and TcdB. It is also found in other toxins. The GTD of TcdB has been shown to glycosylate the host's RhoA protein [].; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 2BVL_A 2BVM_A 2VKH_C 2VL8_A 2VKD_A 3SS1_A 3SRZ_A 2VK9_A.
Probab=97.79 E-value=5.3e-06 Score=85.75 Aligned_cols=46 Identities=35% Similarity=0.609 Sum_probs=32.1
Q ss_pred ccCCCccccchhhhhccCCCcchhhhhHHHHHHHHHhCcEEEecCccc
Q psy10760 161 FQNTPLHGFYTQDAILTSLWPLSHMSDLLRYVTLYKYGGTYLDLDFIV 208 (356)
Q Consensus 161 ~~~tpl~~w~~~~~~~~~~~~~~h~SD~~R~~~L~k~GGiYlD~Dv~~ 208 (356)
+...+...+|..+.... ++++.+||++|+.+|+++||||+|+|++.
T Consensus 187 ~~~~~~~~~Y~~El~lR--gN~AAASDilRl~iL~~~GGIY~D~D~LP 232 (514)
T PF12919_consen 187 FKDKENKDNYQQELLLR--GNYAAASDILRLYILKEYGGIYLDVDMLP 232 (514)
T ss_dssp CCTHHHHHHHHHHHHTS----HHHHHHHHHHHHHHHH-EEEE-TT-EE
T ss_pred ccchHHHHHHHHHHHHC--cChhhHHHHHHHHHHHHhCCEEEecccCC
Confidence 35555566776554443 45677999999999999999999999977
No 7
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=95.89 E-value=0.098 Score=49.07 Aligned_cols=145 Identities=16% Similarity=0.161 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHCCCCeEEEEEcccCCCCCCchHHHHhhcCCCeEEEeccccccccCCCccccchhhhhccCCCcchhh
Q psy10760 106 LRQACSIESAAMMNPGVQVYVVVIASVRNRTRNPLIDRLYEYQNVHIVQVDLGRYFQNTPLHGFYTQDAILTSLWPLSHM 185 (356)
Q Consensus 106 ~rq~~aIeSaar~nP~~~V~ll~~~~~~~~~~~~~i~~L~~ypnv~i~~ld~~~~~~~tpl~~w~~~~~~~~~~~~~~h~ 185 (356)
..-..++.|..+++++..++++.+.. -+....+.|+++ +.+++.++.-.. +.. . ......+ ..
T Consensus 14 ~~a~vl~~SL~~~~~~~~~~vl~~~~----is~~~~~~L~~~-~~~~~~v~~i~~----~~~--~---~~~~~~~---~~ 76 (240)
T cd02537 14 PGALVLGYSLRKVGSSYDLVVLVTPG----VSEESREALEEV-GWIVREVEPIDP----PDS--A---NLLKRPR---FK 76 (240)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCC----CCHHHHHHHHHc-CCEEEecCccCC----cch--h---hhccchH---HH
Confidence 35556788999999999988776532 133456667554 245554433110 100 0 0000011 11
Q ss_pred hhHHHHHHHH--HhC-cEEEecCcccccccccc--c-cceec-cc---CCcccceEEEecCCCHHHHHHHHHHHHhcCCC
Q psy10760 186 SDLLRYVTLY--KYG-GTYLDLDFIVIKSLESL--H-NYAGA-ES---SSVVAAGVIHLDKDHWLSGAALRELRDNFKTT 255 (356)
Q Consensus 186 SD~~R~~~L~--k~G-GiYlD~Dv~~lr~l~~l--~-~~~g~-e~---~~~l~n~v~~~~~~hp~l~~~l~~~~~~y~~~ 255 (356)
+=+.|+.+.. .+. =+|+|+|++++++++++ . ..++. .+ ...+|.|||.+.++....+++++.+.+...
T Consensus 77 ~~~~kl~~~~l~~~drvlylD~D~~v~~~i~~Lf~~~~~~~a~~d~~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~-- 154 (240)
T cd02537 77 DTYTKLRLWNLTEYDKVVFLDADTLVLRNIDELFDLPGEFAAAPDCGWPDLFNSGVFVLKPSEETFNDLLDALQDTPS-- 154 (240)
T ss_pred HHhHHHHhccccccceEEEEeCCeeEccCHHHHhCCCCceeeecccCccccccceEEEEcCCHHHHHHHHHHHhccCC--
Confidence 2234444432 222 47999999999999998 2 23332 22 247999999999998888888887765321
Q ss_pred CccccchHHHHHHHH
Q psy10760 256 EWGANGPGVLTRLLK 270 (356)
Q Consensus 256 ~w~~~GP~llt~vl~ 270 (356)
....--.+++.+++
T Consensus 155 -~~~~DQdiLN~~~~ 168 (240)
T cd02537 155 -FDGGDQGLLNSYFS 168 (240)
T ss_pred -CCCCCHHHHHHHHc
Confidence 22233455555544
No 8
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=95.21 E-value=0.92 Score=42.40 Aligned_cols=153 Identities=14% Similarity=0.167 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHHHHCCC-CeEEEEEcccCCCCCCchHHHHhhcCC--CeEEEeccccccccCCCccccchhhhhccCCC
Q psy10760 104 LTLRQACSIESAAMMNPG-VQVYVVVIASVRNRTRNPLIDRLYEYQ--NVHIVQVDLGRYFQNTPLHGFYTQDAILTSLW 180 (356)
Q Consensus 104 l~~rq~~aIeSaar~nP~-~~V~ll~~~~~~~~~~~~~i~~L~~yp--nv~i~~ld~~~~~~~tpl~~w~~~~~~~~~~~ 180 (356)
.-.-...++.|..+++++ ..++|+..+.+ ....+.++.+.... ++++.+++...+.. .+ ...+.+
T Consensus 12 y~~~~~v~i~Sl~~~~~~~~~~~il~~~is--~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~-~~---------~~~~~~ 79 (246)
T cd00505 12 YLRGAIVLMKSVLRHRTKPLRFHVLTNPLS--DTFKAALDNLRKLYNFNYELIPVDILDSVD-SE---------HLKRPI 79 (246)
T ss_pred hhHHHHHHHHHHHHhCCCCeEEEEEEcccc--HHHHHHHHHHHhccCceEEEEeccccCcch-hh---------hhcCcc
Confidence 334567889999998874 55555554321 11123344332211 46666665433211 00 000111
Q ss_pred cchhhhhHHHHHHHHH---h-CcEEEecCccccccccccc------cceec-c-------------------cCCcccce
Q psy10760 181 PLSHMSDLLRYVTLYK---Y-GGTYLDLDFIVIKSLESLH------NYAGA-E-------------------SSSVVAAG 230 (356)
Q Consensus 181 ~~~h~SD~~R~~~L~k---~-GGiYlD~Dv~~lr~l~~l~------~~~g~-e-------------------~~~~l~n~ 230 (356)
. .+=+.|+.+-.- + -=+|||+|++++++++++. ..+|. + ....+|.|
T Consensus 80 ~---~~~y~RL~i~~llp~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~~yfNsG 156 (246)
T cd00505 80 K---IVTLTKLHLPNLVPDYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPGDRREGKYYRQKRSHLAGPDYFNSG 156 (246)
T ss_pred c---cceeHHHHHHHHhhccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCchhhhccchhhcccCCCCCCCceeee
Confidence 1 233677766332 2 2589999999999999882 22221 1 12368999
Q ss_pred EEEecCCCHHHHHHHHHHHHhcC--CCCccccchHHHHHHHHH
Q psy10760 231 VIHLDKDHWLSGAALRELRDNFK--TTEWGANGPGVLTRLLKA 271 (356)
Q Consensus 231 v~~~~~~hp~l~~~l~~~~~~y~--~~~w~~~GP~llt~vl~~ 271 (356)
||....+----.++++...+.+. .......-..+++.++.+
T Consensus 157 Vmlinl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~~~~ 199 (246)
T cd00505 157 VFVVNLSKERRNQLLKVALEKWLQSLSSLSGGDQDLLNTFFKQ 199 (246)
T ss_pred eEEEechHHHHHHHHHHHHHHHHhhcccCccCCcHHHHHHHhc
Confidence 99988875433333333322210 112233446677776654
No 9
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=95.02 E-value=0.36 Score=44.99 Aligned_cols=92 Identities=21% Similarity=0.221 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHCC--CCeEEEEEcccCCCCCCchHHHHhhc-----CCCeEEEeccccccccCCCccccchhhhhccC
Q psy10760 106 LRQACSIESAAMMNP--GVQVYVVVIASVRNRTRNPLIDRLYE-----YQNVHIVQVDLGRYFQNTPLHGFYTQDAILTS 178 (356)
Q Consensus 106 ~rq~~aIeSaar~nP--~~~V~ll~~~~~~~~~~~~~i~~L~~-----ypnv~i~~ld~~~~~~~tpl~~w~~~~~~~~~ 178 (356)
..-..++.|..++++ ...++++..+. +....+.|+. --+|++..++.+.+. ..+. ..+
T Consensus 13 ~~~~~~l~Sl~~~~~~~~~~~~il~~~i-----s~~~~~~L~~~~~~~~~~i~~~~i~~~~~~-~~~~---------~~~ 77 (248)
T cd04194 13 PYLAVTIKSILANNSKRDYDFYILNDDI-----SEENKKKLKELLKKYNSSIEFIKIDNDDFK-FFPA---------TTD 77 (248)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEeCCC-----CHHHHHHHHHHHHhcCCeEEEEEcCHHHHh-cCCc---------ccc
Confidence 455667899999998 56666666432 2223343422 225666666543321 1110 112
Q ss_pred CCcchhhhhHHHHHHHHHhC----cEEEecCcccccccccc
Q psy10760 179 LWPLSHMSDLLRYVTLYKYG----GTYLDLDFIVIKSLESL 215 (356)
Q Consensus 179 ~~~~~h~SD~~R~~~L~k~G----GiYlD~Dv~~lr~l~~l 215 (356)
.+. .+-+.|+.+-.... =+|||+|++++++++++
T Consensus 78 ~~~---~~~y~rl~l~~ll~~~~rvlylD~D~lv~~di~~L 115 (248)
T cd04194 78 HIS---YATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSEL 115 (248)
T ss_pred ccc---HHHHHHHHHHHHhcccCEEEEEeCCEEecCCHHHH
Confidence 222 35678888877666 68999999999999988
No 10
>PRK15382 non-LEE encoded effector protein NleB; Provisional
Probab=94.12 E-value=0.11 Score=49.05 Aligned_cols=72 Identities=25% Similarity=0.417 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHhCc-------------------EEEecCcccccccccc--cc-c---eec-ccCCcccceEEEecC-CC
Q psy10760 186 SDLLRYVTLYKYGG-------------------TYLDLDFIVIKSLESL--HN-Y---AGA-ESSSVVAAGVIHLDK-DH 238 (356)
Q Consensus 186 SD~~R~~~L~k~GG-------------------iYlD~Dv~~lr~l~~l--~~-~---~g~-e~~~~l~n~v~~~~~-~h 238 (356)
=|++|-+.|.|-|+ ||||+|+++..-|..+ .. + +.. .+...+.||+++..+ +|
T Consensus 182 FDF~RNlalLK~g~~F~e~~k~gch~is~~~GCIYLD~DMilT~KLG~ly~PDGIavhV~r~~~~~slENg~I~VnRsnH 261 (326)
T PRK15382 182 FDFFRNLALLKAGELFTETGKTGCHNISPCEGCIYLDADMIITDKLGVLYAPDGIAVHVDCNDDSKSLENGAIVVNRSNH 261 (326)
T ss_pred hHHHHHHHHHhcccceeecCCCCCcccCCCCceEEeecceeeecccccEEcCCceEEEEEecCCccccccceEEEccCCC
Confidence 48999999988654 7999999999888777 21 1 111 234578888887766 59
Q ss_pred HHHHHHHHHHHHhcCCCCc
Q psy10760 239 WLSGAALRELRDNFKTTEW 257 (356)
Q Consensus 239 p~l~~~l~~~~~~y~~~~w 257 (356)
|.+.+-++.|....++..+
T Consensus 262 PALl~GL~iMhsK~da~PY 280 (326)
T PRK15382 262 PALLAGLDIMKSKVDAHPY 280 (326)
T ss_pred HHHHhhhHHhhcCCCCCcc
Confidence 9999999999988766544
No 11
>PRK15383 type III secretion system protein; Provisional
Probab=93.90 E-value=0.13 Score=48.65 Aligned_cols=72 Identities=19% Similarity=0.310 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHhCc-------------------EEEecCcccccccccc--cc-c---eec-ccCCcccceEEEecC-CC
Q psy10760 186 SDLLRYVTLYKYGG-------------------TYLDLDFIVIKSLESL--HN-Y---AGA-ESSSVVAAGVIHLDK-DH 238 (356)
Q Consensus 186 SD~~R~~~L~k~GG-------------------iYlD~Dv~~lr~l~~l--~~-~---~g~-e~~~~l~n~v~~~~~-~h 238 (356)
=|++|-+.|.|-|+ ||||+|+++..-|..+ .. + +.. .....+.||+|+..+ +|
T Consensus 190 FDF~RNlalLK~g~~F~e~~k~gch~is~~~GCIYLD~DMilT~KLG~ly~PDGIavhV~r~~~~~slENg~I~VnRsnH 269 (335)
T PRK15383 190 FDFYRNLFLLKGSDAFLEAGKHGCHHLQPGGGCIYLDADMLLTDKLGTLYLPDGIAIHVSRKDNHVSLENGIIAVNRSEH 269 (335)
T ss_pred hHHHHHHHHHhcccceeeccccCCcccCCCCceEEeecceeeecccccEEcCCceEEEEEecCCceecccceEEEccCCC
Confidence 48999999988654 7999999999888777 21 1 111 223568888887766 59
Q ss_pred HHHHHHHHHHHHhcCCCCc
Q psy10760 239 WLSGAALRELRDNFKTTEW 257 (356)
Q Consensus 239 p~l~~~l~~~~~~y~~~~w 257 (356)
|.+.+-++.|....++..+
T Consensus 270 PALl~GL~iMhsK~da~PY 288 (335)
T PRK15383 270 PALIKGLEIMHSKPYGDPY 288 (335)
T ss_pred HHHHhhhHHhhcCCCCCcc
Confidence 9999999999988766544
No 12
>PRK15384 type III secretion system protein; Provisional
Probab=93.58 E-value=0.16 Score=48.03 Aligned_cols=72 Identities=24% Similarity=0.443 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHhCc-------------------EEEecCcccccccccc--cc-c---eec-ccCCcccceEEEecC-CC
Q psy10760 186 SDLLRYVTLYKYGG-------------------TYLDLDFIVIKSLESL--HN-Y---AGA-ESSSVVAAGVIHLDK-DH 238 (356)
Q Consensus 186 SD~~R~~~L~k~GG-------------------iYlD~Dv~~lr~l~~l--~~-~---~g~-e~~~~l~n~v~~~~~-~h 238 (356)
=|++|-+.|.|-|+ ||||+|+++..-|..+ .. + +.. .....+.||+++..+ +|
T Consensus 187 FDF~RNlalLK~g~~F~e~~k~gch~is~~~GCIYLDaDMilT~KLG~ly~PDGIavhV~r~~~~~slENg~I~VnRsnH 266 (336)
T PRK15384 187 FDFYRNMAMLKAGQLFLEADKVGCYDLSTNSGCIYLDADMIITEKLGGIYIPDGIAVHVERIDGRASMENGIIAVDRNNH 266 (336)
T ss_pred hHHHHHHHHHhccceeeecCCCCCcccCCCCceEEeeccceeecccccEEcCCceEEEEEecCCceecccceEEEccCCC
Confidence 48999999988654 7999999999888777 21 1 111 223568888887766 59
Q ss_pred HHHHHHHHHHHHhcCCCCc
Q psy10760 239 WLSGAALRELRDNFKTTEW 257 (356)
Q Consensus 239 p~l~~~l~~~~~~y~~~~w 257 (356)
|.+.+-++.|....++..+
T Consensus 267 PALl~GL~iMhsK~da~PY 285 (336)
T PRK15384 267 PALLAGLEIMHTKFDADPY 285 (336)
T ss_pred HHHHhhHHHhhcCCCCCcc
Confidence 9999999999988766544
No 13
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=91.72 E-value=0.84 Score=43.61 Aligned_cols=136 Identities=16% Similarity=0.165 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHCCC-CeEEEEEcccCCCCCCchHHHHhh---cC--CCeEEEeccccccccC---CCccccch-----h
Q psy10760 107 RQACSIESAAMMNPG-VQVYVVVIASVRNRTRNPLIDRLY---EY--QNVHIVQVDLGRYFQN---TPLHGFYT-----Q 172 (356)
Q Consensus 107 rq~~aIeSaar~nP~-~~V~ll~~~~~~~~~~~~~i~~L~---~y--pnv~i~~ld~~~~~~~---tpl~~w~~-----~ 172 (356)
.-+.++.|...+|++ ..+.++.-... .+.+.++.|. .. -+|++..+|...+... .++.+-.. .
T Consensus 12 ~~~v~i~S~l~nn~~~~~~~fhvvtd~---~s~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (257)
T cd06429 12 AAAVVINSSISNNKDPSNLVFHIVTDN---QNYGAMRSWFDLNPLKIATVKVLNFDDFKLLGKVKVDSLMQLESEADTSN 88 (257)
T ss_pred HHHHHHHHHHHhCCCCCceEEEEecCc---cCHHHHHHHHHhcCCCCceEEEEEeCcHHhhcccccchhhhhhccccccc
Confidence 366778888898876 55544443221 1234455552 11 2667776664433211 11110000 0
Q ss_pred hhhccCCCcchhhhhHHHHHHHH---Hh-CcEEEecCccccccccccc------cceecccCCcccceEEEecCC----C
Q psy10760 173 DAILTSLWPLSHMSDLLRYVTLY---KY-GGTYLDLDFIVIKSLESLH------NYAGAESSSVVAAGVIHLDKD----H 238 (356)
Q Consensus 173 ~~~~~~~~~~~h~SD~~R~~~L~---k~-GGiYlD~Dv~~lr~l~~l~------~~~g~e~~~~l~n~v~~~~~~----h 238 (356)
....+..+ ...+-++|+.+=- .. ==+|||+|++|.+++++|. ..+|.-. ..+|.|||...-. +
T Consensus 89 ~~~~~~~~--~s~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav~-dyfNsGV~linl~~wr~~ 165 (257)
T cd06429 89 LKQRKPEY--ISLLNFARFYLPELFPKLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAVE-TSWNPGVNVVNLTEWRRQ 165 (257)
T ss_pred cccCCccc--cCHHHHHHHHHHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEEh-hhcccceEEEeHHHHHhc
Confidence 00011111 2246788987722 22 3589999999999999982 2333322 2688888877653 3
Q ss_pred HHHHHHHHHH
Q psy10760 239 WLSGAALREL 248 (356)
Q Consensus 239 p~l~~~l~~~ 248 (356)
-+.+.+++.+
T Consensus 166 ~i~~~~~~~~ 175 (257)
T cd06429 166 NVTETYEKWM 175 (257)
T ss_pred cHHHHHHHHH
Confidence 3444444443
No 14
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=90.81 E-value=0.67 Score=45.89 Aligned_cols=97 Identities=21% Similarity=0.288 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHHCCCC--eEEEEEcccCCCCCCchHHHHh-hcCC-CeEEEeccccccccCCCccccchhhhhccC
Q psy10760 103 ELTLRQACSIESAAMMNPGV--QVYVVVIASVRNRTRNPLIDRL-YEYQ-NVHIVQVDLGRYFQNTPLHGFYTQDAILTS 178 (356)
Q Consensus 103 ~l~~rq~~aIeSaar~nP~~--~V~ll~~~~~~~~~~~~~i~~L-~~yp-nv~i~~ld~~~~~~~tpl~~w~~~~~~~~~ 178 (356)
..-+--..+|.|...+||+. +++|+.++.+. .....++.+ +.++ ++.+..+|.+.+ .+.|. ..
T Consensus 35 ny~~~~~vsi~Sil~nn~~~~~~f~Il~~~is~--e~~~~l~~l~~~~~~~i~~~~id~~~~-~~~~~----------~~ 101 (334)
T PRK15171 35 NFLFGCGVSIASVLLNNPDKSLVFHVFTDYISD--ADKQRFSALAKQYNTRINIYLINCERL-KSLPS----------TK 101 (334)
T ss_pred hhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCH--HHHHHHHHHHHhcCCeEEEEEeCHHHH-hCCcc----------cC
Confidence 35567778899999999885 45555543311 111233344 4443 677777765432 22221 11
Q ss_pred CCcchhhhhHHHHHHHHH----h-CcEEEecCcccccccccc
Q psy10760 179 LWPLSHMSDLLRYVTLYK----Y-GGTYLDLDFIVIKSLESL 215 (356)
Q Consensus 179 ~~~~~h~SD~~R~~~L~k----~-GGiYlD~Dv~~lr~l~~l 215 (356)
.+ ..+=++|+.+--- . ==+|||+|++|..++++|
T Consensus 102 ~~---s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L 140 (334)
T PRK15171 102 NW---TYATYFRFIIADYFIDKTDKVLYLDADIACKGSIKEL 140 (334)
T ss_pred cC---CHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHH
Confidence 12 2456889855332 2 258999999999999998
No 15
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=90.78 E-value=0.68 Score=44.82 Aligned_cols=157 Identities=13% Similarity=0.146 Sum_probs=84.4
Q ss_pred HHHHHHHHH--h-CcEEEecCcccccccccc---c--cceeccc-CCcccceEEEecCCCHHHHHHHHHHHHhcCCCCcc
Q psy10760 188 LLRYVTLYK--Y-GGTYLDLDFIVIKSLESL---H--NYAGAES-SSVVAAGVIHLDKDHWLSGAALRELRDNFKTTEWG 258 (356)
Q Consensus 188 ~~R~~~L~k--~-GGiYlD~Dv~~lr~l~~l---~--~~~g~e~-~~~l~n~v~~~~~~hp~l~~~l~~~~~~y~~~~w~ 258 (356)
+.|+.+.-. | =-+|||+|+++++++|++ . ..++... ...+|.|||...|.-....++++.+.+...... .
T Consensus 81 ~tKl~~~~l~~y~kvlyLDaD~l~~~~ideLf~~~~~~~~Aap~~~~~FNSGvmvi~ps~~~~~~l~~~~~~~~~~~~-~ 159 (278)
T cd06914 81 LTKLRAFNQTEYDRIIYFDSDSIIRHPMDELFFLPNYIKFAAPRAYWKFASHLMVIKPSKEAFKELMTEILPAYLNKK-N 159 (278)
T ss_pred HHHHHhccccceeeEEEecCChhhhcChHHHhcCCcccceeeecCcceecceeEEEeCCHHHHHHHHHHHHHhcccCC-C
Confidence 666655433 2 268999999999999998 2 1233322 236999999999999888888888775432111 1
Q ss_pred ccchHHHHHHHHHHcCCCCCCCcceeecceEEcCCCceeccCC----cchhhhcccC--Cccc--ccccCCceEEEeeeC
Q psy10760 259 ANGPGVLTRLLKAECKPQSYAHNIISCRNFTIYPPRFFYPVHW----EHWADYLNET--NAPA--TMSLFRDSYALHVWN 330 (356)
Q Consensus 259 ~~GP~llt~vl~~~~~~~~~~~~~~~~~~v~ilP~~~FyPi~~----~~~~~~f~~~--~~~~--~~~~~~~sy~iHlwn 330 (356)
..--++|+.++....+. ....+.++|...+-=.+. ...+.|.... ..++ ......++-.||.=.
T Consensus 160 ~~DQdiLN~~~~~~~~~--------~~~~~~~Lp~~~y~llt~~~r~~~~~~~l~~~~~~~~~w~~~~~~~~~k~vHFSd 231 (278)
T cd06914 160 EYDMDLINEEFYNSKQL--------FKPSVLVLPHRQYGLLTGEFREKLHKSFLSNAQHLYEKWDPDDVFKESKVIHFSD 231 (278)
T ss_pred CCChHHHHHHHhCCccc--------cCcceEEcCccccccCChhhcccCHHHhhccccccccccCHHHHHhhCeEEEecC
Confidence 11235666666543111 124467777764322211 1112222110 0111 123567899999755
Q ss_pred CC-cCCCccccCChHHHHHHHHhcCC
Q psy10760 331 SF-TKRVPVKLGSEQPYAQIARRYCP 355 (356)
Q Consensus 331 ~~-~~~~~i~~gs~~~y~~La~~~CP 355 (356)
.- -|.|. ..+..........+|+
T Consensus 232 ~Pl~KPW~--~~~~~~~~~~~~~~~~ 255 (278)
T cd06914 232 SPLPKPWN--YNNLEDIYCIEKIYCK 255 (278)
T ss_pred CCCCCCcC--CcCHHHHHHhCCcccc
Confidence 42 23331 2233334444455553
No 16
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=88.32 E-value=2.5 Score=36.93 Aligned_cols=76 Identities=16% Similarity=0.330 Sum_probs=52.8
Q ss_pred CCCCCccCCCCCCcEEEEeeCCCCCCCCCCCHHHHHHHHHHHHHCCCCeEEEEEcccCCCCCCchHHHHhhc-CCCeEEE
Q psy10760 75 AFDDITRLDVPDNSIFFLETSCTHADGVELTLRQACSIESAAMMNPGVQVYVVVIASVRNRTRNPLIDRLYE-YQNVHIV 153 (356)
Q Consensus 75 ~~~~l~~~~~~~~~IfF~ets~~~~~~~~l~~rq~~aIeSaar~nP~~~V~ll~~~~~~~~~~~~~i~~L~~-ypnv~i~ 153 (356)
.+.+|+.......+|-|+...-.. .+ -.-.-+|.|.++..|+-.++|+.-+. +...++.|++ .+|++|+
T Consensus 48 ~~v~l~~~~~n~~~vvfVSa~S~~----h~-~~~~~~i~si~~~~P~~k~ilY~LgL-----~~~~i~~L~~~~~n~evr 117 (142)
T PF07801_consen 48 PFVDLSSSSKNSSDVVFVSATSDN----HF-NESMKSISSIRKFYPNHKIILYDLGL-----SEEQIKKLKKNFCNVEVR 117 (142)
T ss_pred cceecccccccCCccEEEEEecch----HH-HHHHHHHHHHHHHCCCCcEEEEeCCC-----CHHHHHHHHhcCCceEEE
Confidence 344444333355567777654432 12 35666888999999999999998776 3456888866 5999999
Q ss_pred ecccccc
Q psy10760 154 QVDLGRY 160 (356)
Q Consensus 154 ~ld~~~~ 160 (356)
..|...|
T Consensus 118 ~Fn~s~Y 124 (142)
T PF07801_consen 118 KFNFSKY 124 (142)
T ss_pred ECCCccC
Confidence 9887665
No 17
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=84.99 E-value=0.71 Score=42.03 Aligned_cols=61 Identities=26% Similarity=0.470 Sum_probs=36.8
Q ss_pred HHHHHHHHH---hC-cEEEecCccccccccccc------ccee-cc---------------------cCCcccceEEEec
Q psy10760 188 LLRYVTLYK---YG-GTYLDLDFIVIKSLESLH------NYAG-AE---------------------SSSVVAAGVIHLD 235 (356)
Q Consensus 188 ~~R~~~L~k---~G-GiYlD~Dv~~lr~l~~l~------~~~g-~e---------------------~~~~l~n~v~~~~ 235 (356)
+.|+.+-.. ++ =+|||+|++++++++++. .+++ .+ ....+|.|||.+.
T Consensus 87 ~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~fNsGv~l~~ 166 (250)
T PF01501_consen 87 FARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVEDESFDNFPNKRFPFSERKQPGNKPYFNSGVMLFN 166 (250)
T ss_dssp GGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE----HHHHTSTTSSEEECESTTTTSEEEEEEEEE
T ss_pred HHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccchhhhccccccchhhhhhhcccchhhcccCcccccccCcEEEEe
Confidence 456554443 22 589999999999999871 1221 11 1357999999999
Q ss_pred CCCHHHHHHHHHH
Q psy10760 236 KDHWLSGAALREL 248 (356)
Q Consensus 236 ~~hp~l~~~l~~~ 248 (356)
+...--..+.+.+
T Consensus 167 ~~~~~~~~~~~~~ 179 (250)
T PF01501_consen 167 PSKWRKENILQKL 179 (250)
T ss_dssp HHHHHHHHHHHHH
T ss_pred echhhhhhhhhhh
Confidence 8765433444433
No 18
>PLN00176 galactinol synthase
Probab=83.88 E-value=1.2 Score=44.30 Aligned_cols=127 Identities=17% Similarity=0.198 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHCCCCeEEEEEcccCCCCCCchHHHHhhcCCCeEEEeccccccccCCCccccchhhhhccCCCcchhhhh
Q psy10760 108 QACSIESAAMMNPGVQVYVVVIASVRNRTRNPLIDRLYEYQNVHIVQVDLGRYFQNTPLHGFYTQDAILTSLWPLSHMSD 187 (356)
Q Consensus 108 q~~aIeSaar~nP~~~V~ll~~~~~~~~~~~~~i~~L~~ypnv~i~~ld~~~~~~~tpl~~w~~~~~~~~~~~~~~h~SD 187 (356)
-.....|.++.+..+.++++.+..- +.++.+.|+.. +..|+.++.-. |.+. ...+....+ ....+
T Consensus 39 a~vL~~SLr~~~s~~~lVvlVt~dV----p~e~r~~L~~~-g~~V~~V~~i~-----~~~~---~~~~~~~~~-~i~~t- 103 (333)
T PLN00176 39 VVGLAKGLRKVKSAYPLVVAVLPDV----PEEHRRILVSQ-GCIVREIEPVY-----PPEN---QTQFAMAYY-VINYS- 103 (333)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCC----CHHHHHHHHHc-CCEEEEecccC-----Cccc---ccccccchh-hhhhh-
Confidence 3445677788888998887766331 23456666442 23444443211 1110 000110001 00111
Q ss_pred HHHHHHHHHhC-cEEEecCccccccccccc----cceec------------------------------------ccCCc
Q psy10760 188 LLRYVTLYKYG-GTYLDLDFIVIKSLESLH----NYAGA------------------------------------ESSSV 226 (356)
Q Consensus 188 ~~R~~~L~k~G-GiYlD~Dv~~lr~l~~l~----~~~g~------------------------------------e~~~~ 226 (356)
=+|+.-|-.|. -+|||+|+++++++|+|- ..++. .....
T Consensus 104 Kl~iw~l~~ydkvlyLDaD~lv~~nid~Lf~~~~~~~aAV~dc~~~~~~~~~p~~~~~~c~~~~~~~~wp~~~g~~~~~y 183 (333)
T PLN00176 104 KLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWPAELGPPPPLY 183 (333)
T ss_pred hhhhccccccceEEEecCCEEeecChHHHhcCCCcceEEEecccccccccccccccccccccchhhccchhhccCCCCCe
Confidence 24444455554 789999999999999981 11100 01136
Q ss_pred ccceEEEecCCCHHHHHHHHHHH
Q psy10760 227 VAAGVIHLDKDHWLSGAALRELR 249 (356)
Q Consensus 227 l~n~v~~~~~~hp~l~~~l~~~~ 249 (356)
+|.|+|.+.|.....+.+++.+.
T Consensus 184 FNSGVlvinps~~~~~~ll~~l~ 206 (333)
T PLN00176 184 FNAGMFVFEPSLSTYEDLLETLK 206 (333)
T ss_pred EEeEEEEEEcCHHHHHHHHHHHH
Confidence 89999999999877777777654
No 19
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=83.20 E-value=4.1 Score=38.55 Aligned_cols=107 Identities=14% Similarity=0.084 Sum_probs=54.9
Q ss_pred cEEEEeeCCCCCCCCCCCHHHHHHHHHHHHHCC-CCeEEEEEcccCCCCCCchHHHHh-hcCC-CeEEEeccccccccCC
Q psy10760 88 SIFFLETSCTHADGVELTLRQACSIESAAMMNP-GVQVYVVVIASVRNRTRNPLIDRL-YEYQ-NVHIVQVDLGRYFQNT 164 (356)
Q Consensus 88 ~IfF~ets~~~~~~~~l~~rq~~aIeSaar~nP-~~~V~ll~~~~~~~~~~~~~i~~L-~~yp-nv~i~~ld~~~~~~~t 164 (356)
|||-+ .++. ....--..++-|...+|. ..+++|+.++.+. ...+.++.+ +.+. .++++.+|...++...
T Consensus 2 ni~~~-~~~~-----~y~~~~~v~l~Sll~nn~~~~~fyil~~~is~--e~~~~l~~~~~~~~~~i~~i~i~~~~~~~~~ 73 (248)
T cd06432 2 NIFSV-ASGH-----LYERFLRIMMLSVMKNTKSPVKFWFIKNFLSP--QFKEFLPEMAKEYGFEYELVTYKWPRWLHKQ 73 (248)
T ss_pred eEEEE-cCcH-----HHHHHHHHHHHHHHHcCCCCEEEEEEeCCCCH--HHHHHHHHHHHHhCCceEEEEecChhhhhcc
Confidence 56666 3223 344556778899988764 4566666543311 112334444 4442 4566655533322221
Q ss_pred CccccchhhhhccCCCcchhhhhHHHHHH---HHH-h-CcEEEecCccccccccccc
Q psy10760 165 PLHGFYTQDAILTSLWPLSHMSDLLRYVT---LYK-Y-GGTYLDLDFIVIKSLESLH 216 (356)
Q Consensus 165 pl~~w~~~~~~~~~~~~~~h~SD~~R~~~---L~k-~-GGiYlD~Dv~~lr~l~~l~ 216 (356)
+.. .. .+.+ +.|+.+ |=+ . ==+|||+|++|..++.+|.
T Consensus 74 ~~~-----------~~--~~~~-y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~ 116 (248)
T cd06432 74 TEK-----------QR--IIWG-YKILFLDVLFPLNVDKVIFVDADQIVRTDLKELM 116 (248)
T ss_pred ccc-----------ch--hHHH-HHHHHHHHhhhhccCEEEEEcCCceecccHHHHH
Confidence 100 00 0011 233322 211 2 3589999999999999983
No 20
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=81.71 E-value=4.8 Score=38.87 Aligned_cols=95 Identities=11% Similarity=0.129 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHHCC-CCeEEEEEcccCCCCCCchHHHHhh---cCCCeEEEeccccccccCCCccccchhhhhccCC
Q psy10760 104 LTLRQACSIESAAMMNP-GVQVYVVVIASVRNRTRNPLIDRLY---EYQNVHIVQVDLGRYFQNTPLHGFYTQDAILTSL 179 (356)
Q Consensus 104 l~~rq~~aIeSaar~nP-~~~V~ll~~~~~~~~~~~~~i~~L~---~ypnv~i~~ld~~~~~~~tpl~~w~~~~~~~~~~ 179 (356)
..+.-+.+|.|+..++. ..+++|+..+. +.+.++.|. ...|.+|.-.+++++.... +|. .+
T Consensus 12 y~~~~~~~i~Sil~n~~~~~~fhii~d~~-----s~~~~~~l~~~~~~~~~~i~f~~i~~~~~~~---~~~-----~~-- 76 (280)
T cd06431 12 ASRDVVTLVKSVLFYRRNPLHFHLITDEI-----ARRILATLFQTWMVPAVEVSFYNAEELKSRV---SWI-----PN-- 76 (280)
T ss_pred cHHHHHHHHHHHHHcCCCCEEEEEEECCc-----CHHHHHHHHHhccccCcEEEEEEhHHhhhhh---ccC-----cc--
Confidence 44556778999988763 35666665533 223444442 2346666655554322110 111 01
Q ss_pred CcchhhhhH---HHHHHHHHh-----CcEEEecCccccccccccc
Q psy10760 180 WPLSHMSDL---LRYVTLYKY-----GGTYLDLDFIVIKSLESLH 216 (356)
Q Consensus 180 ~~~~h~SD~---~R~~~L~k~-----GGiYlD~Dv~~lr~l~~l~ 216 (356)
.|.|.. +|+.+---. -=+|+|+|+++..++++|.
T Consensus 77 ---~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~ 118 (280)
T cd06431 77 ---KHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELW 118 (280)
T ss_pred ---cchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHH
Confidence 123334 688774333 3589999999999998873
No 21
>PLN02742 Probable galacturonosyltransferase
Probab=81.38 E-value=7.4 Score=40.95 Aligned_cols=32 Identities=34% Similarity=0.438 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHh----CcEEEecCccccccccccc
Q psy10760 185 MSDLLRYVTLYKY----GGTYLDLDFIVIKSLESLH 216 (356)
Q Consensus 185 ~SD~~R~~~L~k~----GGiYlD~Dv~~lr~l~~l~ 216 (356)
..-++|+.+-.-+ ==||||+|+++.+++.+|.
T Consensus 338 ~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~ 373 (534)
T PLN02742 338 MLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLF 373 (534)
T ss_pred HHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHh
Confidence 6789998774433 3589999999999999984
No 22
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=77.80 E-value=7.3 Score=38.61 Aligned_cols=93 Identities=19% Similarity=0.235 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHCC--CCeEEEEEcccCCCCCCchHHHH-hhcCC-CeEEEeccccccccCCCccccchhhhhccCCCcch
Q psy10760 108 QACSIESAAMMNP--GVQVYVVVIASVRNRTRNPLIDR-LYEYQ-NVHIVQVDLGRYFQNTPLHGFYTQDAILTSLWPLS 183 (356)
Q Consensus 108 q~~aIeSaar~nP--~~~V~ll~~~~~~~~~~~~~i~~-L~~yp-nv~i~~ld~~~~~~~tpl~~w~~~~~~~~~~~~~~ 183 (356)
-..||-|...+|+ ..+++++..+.+.++. .-++. ++.+. -+.+..+|.+.+ ...|. .+..|.
T Consensus 17 ~gvsI~SiL~~n~~~~~~fhil~~~i~~e~~--~~l~~~~~~f~~~i~~~~id~~~~-~~~~~---------~~~~~s-- 82 (325)
T COG1442 17 AGVSIYSLLEHNRKIFYKFHILVDGLNEEDK--KKLNETAEPFKSFIVLEVIDIEPF-LDYPP---------FTKRFS-- 82 (325)
T ss_pred HHHHHHHHHHhCccccEEEEEEecCCCHHHH--HHHHHHHHhhccceeeEEEechhh-hcccc---------cccchH--
Confidence 4568999999999 7888888876532211 11222 23332 244444454443 22221 112222
Q ss_pred hhhhHHHHHHHHHhCc----EEEecCcccccccccc
Q psy10760 184 HMSDLLRYVTLYKYGG----TYLDLDFIVIKSLESL 215 (356)
Q Consensus 184 h~SD~~R~~~L~k~GG----iYlD~Dv~~lr~l~~l 215 (356)
.+=++||.+=--+.- +|+|+|++|.++++++
T Consensus 83 -~~v~~R~fiadlf~~~dK~lylD~Dvi~~g~l~~l 117 (325)
T COG1442 83 -KMVLVRYFLADLFPQYDKMLYLDVDVIFCGDLSEL 117 (325)
T ss_pred -HHHHHHHHHHHhccccCeEEEEecCEEEcCcHHHH
Confidence 345788877655554 9999999999999887
No 23
>PLN02718 Probable galacturonosyltransferase
Probab=76.87 E-value=6.5 Score=41.92 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHh----CcEEEecCccccccccccc
Q psy10760 185 MSDLLRYVTLYKY----GGTYLDLDFIVIKSLESLH 216 (356)
Q Consensus 185 ~SD~~R~~~L~k~----GGiYlD~Dv~~lr~l~~l~ 216 (356)
..-++|+.+---+ ==||||+|++|.+++.+|.
T Consensus 403 ~~~y~Rl~ipellp~l~KvLYLD~DvVV~~DL~eL~ 438 (603)
T PLN02718 403 ALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRLW 438 (603)
T ss_pred HHHHHHHHHHHHhcccCEEEEEECCEEecCCHHHHh
Confidence 5678898774332 3589999999999999984
No 24
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=74.86 E-value=19 Score=32.56 Aligned_cols=101 Identities=13% Similarity=0.221 Sum_probs=59.4
Q ss_pred hhhhHHHHHHHHHhCcEEEecCccccccccccc-----cceeccc----------CCcccceEEEecCCCH---HHHHHH
Q psy10760 184 HMSDLLRYVTLYKYGGTYLDLDFIVIKSLESLH-----NYAGAES----------SSVVAAGVIHLDKDHW---LSGAAL 245 (356)
Q Consensus 184 h~SD~~R~~~L~k~GGiYlD~Dv~~lr~l~~l~-----~~~g~e~----------~~~l~n~v~~~~~~hp---~l~~~l 245 (356)
.+..+++-.+-.-+.=+++|+|++.+|+..++- .++...+ ...+|.|++.+++.-. ++++|+
T Consensus 54 ~K~~~~~~~L~~G~~vl~~D~Dvv~~~dp~~~~~~~~~Di~~~~d~~~~~~~~~~~~~~n~G~~~~r~t~~~~~~~~~w~ 133 (212)
T PF03407_consen 54 LKPKVLLDLLELGYDVLFSDADVVWLRDPLPYFENPDADILFSSDGWDGTNSDRNGNLVNTGFYYFRPTPRTIAFLEDWL 133 (212)
T ss_pred HHHHHHHHHHHcCCceEEecCCEEEecCcHHhhccCCCceEEecCCCcccchhhcCCccccceEEEecCHHHHHHHHHHH
Confidence 356666655555577899999999999865541 1221111 1246889998888643 345555
Q ss_pred HHHHHhcCCCCccccchHHHHHHHHHHcCCCCCCCcceeecceEEcCCCce
Q psy10760 246 RELRDNFKTTEWGANGPGVLTRLLKAECKPQSYAHNIISCRNFTIYPPRFF 296 (356)
Q Consensus 246 ~~~~~~y~~~~w~~~GP~llt~vl~~~~~~~~~~~~~~~~~~v~ilP~~~F 296 (356)
+.+.+. +..| --.+++.++.+..... ..-.+.++|+..|
T Consensus 134 ~~~~~~--~~~~---DQ~~~n~~l~~~~~~~-------~~~~~~~L~~~~f 172 (212)
T PF03407_consen 134 ERMAES--PGCW---DQQAFNELLREQAARY-------GGLRVRFLPPSLF 172 (212)
T ss_pred HHHHhC--CCcc---hHHHHHHHHHhcccCC-------cCcEEEEeCHHHe
Confidence 544432 1122 3467777777642110 1124789999988
No 25
>PLN02523 galacturonosyltransferase
Probab=70.45 E-value=12 Score=39.70 Aligned_cols=33 Identities=30% Similarity=0.314 Sum_probs=25.8
Q ss_pred hhhhHHHHHHHHH---h-CcEEEecCccccccccccc
Q psy10760 184 HMSDLLRYVTLYK---Y-GGTYLDLDFIVIKSLESLH 216 (356)
Q Consensus 184 h~SD~~R~~~L~k---~-GGiYlD~Dv~~lr~l~~l~ 216 (356)
..+.++|+.+--- . ==+|||.|++|.++|++|.
T Consensus 361 S~~ny~Rf~IPeLLP~ldKVLYLD~DVVVq~DLseLw 397 (559)
T PLN02523 361 SMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLW 397 (559)
T ss_pred hHHHHHHHHHHHHhcccCeEEEEeCCEEecCCHHHHH
Confidence 3577899877443 2 3589999999999999984
No 26
>PLN02829 Probable galacturonosyltransferase
Probab=64.33 E-value=14 Score=39.56 Aligned_cols=113 Identities=16% Similarity=0.242 Sum_probs=58.4
Q ss_pred CCCcEEEEeeCCCCCCCCCCCHHHHHHHHHHHHHCC--CCeEEEEEccc-CCCCCC-chHHHHhhcCCCeEEEecccccc
Q psy10760 85 PDNSIFFLETSCTHADGVELTLRQACSIESAAMMNP--GVQVYVVVIAS-VRNRTR-NPLIDRLYEYQNVHIVQVDLGRY 160 (356)
Q Consensus 85 ~~~~IfF~ets~~~~~~~~l~~rq~~aIeSaar~nP--~~~V~ll~~~~-~~~~~~-~~~i~~L~~ypnv~i~~ld~~~~ 160 (356)
.+.++.||--+++. ++. |...+...|| +.+|.|..-.. +.-|.+ .+.++.|+... . .+.+
T Consensus 357 ~p~k~VFHivTD~~----ny~-----aM~~WF~~n~~~~A~v~V~nie~f~wln~~~~pvl~ql~~~~---~----~~~y 420 (639)
T PLN02829 357 HPSKHVFHIVTDRL----NYA-----AMRMWFLVNPPGKATIQVQNIEEFTWLNSSYSPVLKQLGSQS---M----IDYY 420 (639)
T ss_pred CccceEEEEecCcc----chH-----HHHHHHhhCCCccceEEEEehhhcccccccccHHHHHhhhhh---h----hhhh
Confidence 56788888888885 554 4555666666 55665543322 111221 34444442110 0 0112
Q ss_pred ccCCCccccchhhhhccCCCcchhhhhHHHHHH--HHH-h-CcEEEecCccccccccccc
Q psy10760 161 FQNTPLHGFYTQDAILTSLWPLSHMSDLLRYVT--LYK-Y-GGTYLDLDFIVIKSLESLH 216 (356)
Q Consensus 161 ~~~tpl~~w~~~~~~~~~~~~~~h~SD~~R~~~--L~k-~-GGiYlD~Dv~~lr~l~~l~ 216 (356)
|.+.-... =.+..+++.+| .....++|+.+ +.. . ==||||+|++|.++|++|.
T Consensus 421 f~~~~~~~-~~~~k~r~p~y--lS~lnY~RfyLPeLLP~LdKVLYLD~DVVVqgDLseLw 477 (639)
T PLN02829 421 FRAHRANS-DSNLKYRNPKY--LSILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTGLW 477 (639)
T ss_pred hhccccCc-ccccccCCcch--hhHHHHHHHHHHHHhcccCeEEEEeCCEEeCCChHHHH
Confidence 21100000 00112333333 23578899977 333 1 2589999999999999983
No 27
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=47.48 E-value=7.2 Score=38.32 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=22.4
Q ss_pred HHHHHH---HHH-hCcEEEecCccccccccccc
Q psy10760 188 LLRYVT---LYK-YGGTYLDLDFIVIKSLESLH 216 (356)
Q Consensus 188 ~~R~~~---L~k-~GGiYlD~Dv~~lr~l~~l~ 216 (356)
+.|+.+ |-. .-=+|+|+|++|++|++++.
T Consensus 85 y~RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~ 117 (304)
T cd06430 85 AQRLFLPSLLPDVDSLLYVDTDILFLRPVEEIW 117 (304)
T ss_pred HHHHHHHHHhhhhceEEEeccceeecCCHHHHH
Confidence 778764 322 34689999999999999983
No 28
>PF12919 TcdA_TcdB: TcdA/TcdB catalytic glycosyltransferase domain; InterPro: IPR024770 Toxins A (TcdA) and B (TcdB) of Clostridium difficile belong to the family of clostridial glucosylating toxins. These toxins glucosylate small GTPases of Rho and Ras families, inhibiting the signalling and regulatory functions of these switch proteins. After receptor-binding, the toxins are endocytosed to reach acidic endosomal compartments from where the toxins are translocated into the cytosol []. TcdB has been shown to consist of a N-terminal glucosyltransferase domain (GTD), responsible for the biological effects of the toxin, a cysteine protease domain (CPD), responsible for autocatalytic cleavage, a hydrophobic region (HR), which has been suggested to be involved in toxin translocation, and a C-terminal repetitive domain involved in receptor binding. The pore-forming region of toxin B has been described to be in a region in the middle of the protein, within amino acid residues 830 and 990 []. This entry represents the N-terminal glucosyltransferase domain from TcdA and TcdB. It is also found in other toxins. The GTD of TcdB has been shown to glycosylate the host's RhoA protein [].; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 2BVL_A 2BVM_A 2VKH_C 2VL8_A 2VKD_A 3SS1_A 3SRZ_A 2VK9_A.
Probab=46.58 E-value=37 Score=35.85 Aligned_cols=40 Identities=15% Similarity=0.070 Sum_probs=29.7
Q ss_pred CCcEEEEeeCCCCCCCCCCCHHHHHHHHHHHHHCCCCeEEEEEccc
Q psy10760 86 DNSIFFLETSCTHADGVELTLRQACSIESAAMMNPGVQVYVVVIAS 131 (356)
Q Consensus 86 ~~~IfF~ets~~~~~~~~l~~rq~~aIeSaar~nP~~~V~ll~~~~ 131 (356)
+++|.|+|-.|. ++..|.--|.-+...||||++.+|.+..
T Consensus 1 eK~iH~iWigG~------~~~~~~~Yik~w~~~n~dy~~~lW~D~~ 40 (514)
T PF12919_consen 1 EKNIHFIWIGGA------PPDIQRDYIKTWKDTNPDYTINLWYDSN 40 (514)
T ss_dssp -SEEEEE--SS---------HHHHHHHHHHHHHTTTSEEEEEE-TT
T ss_pred CCeEEEEEeCCC------CchhHHHHHHHHHHHCCCCEEEEEECch
Confidence 478999999665 6789999999999999999999999754
No 29
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=39.64 E-value=72 Score=30.40 Aligned_cols=78 Identities=21% Similarity=0.347 Sum_probs=47.4
Q ss_pred HHHHHHHHCCCCeEEEEEcccC-CCC-----CCc---hHHHHhhcCCCeEEEeccccccccCCCccccchhhhhccCCCc
Q psy10760 111 SIESAAMMNPGVQVYVVVIASV-RNR-----TRN---PLIDRLYEYQNVHIVQVDLGRYFQNTPLHGFYTQDAILTSLWP 181 (356)
Q Consensus 111 aIeSaar~nP~~~V~ll~~~~~-~~~-----~~~---~~i~~L~~ypnv~i~~ld~~~~~~~tpl~~w~~~~~~~~~~~~ 181 (356)
.+..|+..+|+....+..+-.+ +.. ... ..+..|..++|++++= |..-.+.+.. .
T Consensus 20 ~l~~a~~~~p~~~f~vIiNP~sGPG~~~~~~pd~~Y~~~i~~L~~~~nv~vlG---------------YV~T~Yg~R~-~ 83 (253)
T PF12138_consen 20 PLYDAIAAHPSVPFTVIINPNSGPGSAPDPWPDANYAAAIPRLNSYANVRVLG---------------YVHTSYGSRP-L 83 (253)
T ss_pred HHHHHHhcCCCCcEEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCcEEE---------------EEEccccCCC-H
Confidence 4567788899988766665221 110 112 4456666889998861 1111121111 2
Q ss_pred chhhhhHHHHHHH--------HHhCcEEEec
Q psy10760 182 LSHMSDLLRYVTL--------YKYGGTYLDL 204 (356)
Q Consensus 182 ~~h~SD~~R~~~L--------~k~GGiYlD~ 204 (356)
-...+|+-||.-- +.-+||++|=
T Consensus 84 ~~V~~dI~~Y~~W~~~~~~~~~~vdGIFfDE 114 (253)
T PF12138_consen 84 SEVKADIDTYASWYGQSEDYGYRVDGIFFDE 114 (253)
T ss_pred HHHHHHHHHHhhccccccCCCcccceEEEec
Confidence 2458999999988 6778999984
No 30
>PLN02659 Probable galacturonosyltransferase
Probab=33.95 E-value=19 Score=38.00 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=25.6
Q ss_pred hhhhHHHHHH--HHH-h-CcEEEecCccccccccccc
Q psy10760 184 HMSDLLRYVT--LYK-Y-GGTYLDLDFIVIKSLESLH 216 (356)
Q Consensus 184 h~SD~~R~~~--L~k-~-GGiYlD~Dv~~lr~l~~l~ 216 (356)
...-.+|+.+ +.. . ==+|||.|++|.++|++|.
T Consensus 328 S~~nY~RL~IPeLLP~LdKVLYLD~DVVVqgDLseLw 364 (534)
T PLN02659 328 SVMNHIRIHLPELFPSLNKVVFLDDDIVVQTDLSPLW 364 (534)
T ss_pred eHHHHHHHHHHHHhhhcCeEEEeeCCEEEcCchHHHH
Confidence 3568999877 332 2 3589999999999999983
No 31
>PLN02870 Probable galacturonosyltransferase
Probab=33.74 E-value=19 Score=37.90 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=25.7
Q ss_pred hhhhHHHHHHHHHh----CcEEEecCccccccccccc
Q psy10760 184 HMSDLLRYVTLYKY----GGTYLDLDFIVIKSLESLH 216 (356)
Q Consensus 184 h~SD~~R~~~L~k~----GGiYlD~Dv~~lr~l~~l~ 216 (356)
.....+|+.+---+ ==+|||.|++|.++|.+|.
T Consensus 327 S~lny~Rl~LPelLP~LdKVLYLD~DVVVqgDLseLw 363 (533)
T PLN02870 327 SLLNHLRIYLPELFPNLDKVVFLDDDVVIQRDLSPLW 363 (533)
T ss_pred CHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHh
Confidence 36789998773322 2589999999999999983
No 32
>PLN02867 Probable galacturonosyltransferase
Probab=31.46 E-value=21 Score=37.64 Aligned_cols=31 Identities=29% Similarity=0.323 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHhC----cEEEecCcccccccccc
Q psy10760 185 MSDLLRYVTLYKYG----GTYLDLDFIVIKSLESL 215 (356)
Q Consensus 185 ~SD~~R~~~L~k~G----GiYlD~Dv~~lr~l~~l 215 (356)
.--++|+.+=--+- =+|||.|++|.++|++|
T Consensus 330 ~lnYlRflIPeLLP~LdKVLYLD~DVVVqgDLseL 364 (535)
T PLN02867 330 LLNHLRIYIPELFPDLNKIVFLDDDVVVQHDLSSL 364 (535)
T ss_pred HHHHHHHHHHHHhhccCeEEEecCCEEEcCchHHH
Confidence 56788988766544 48999999999999998
No 33
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=25.47 E-value=64 Score=27.61 Aligned_cols=17 Identities=41% Similarity=0.587 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy10760 11 ALLYLTAVCLTLSFLLG 27 (356)
Q Consensus 11 ~~~~~~~~~~~~~~~~~ 27 (356)
++|-|++||++|||+|-
T Consensus 38 siL~Ls~vvlvi~~~LL 54 (125)
T PF15048_consen 38 SILALSFVVLVISFFLL 54 (125)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67889999999998764
No 34
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=23.52 E-value=32 Score=37.02 Aligned_cols=113 Identities=18% Similarity=0.170 Sum_probs=58.3
Q ss_pred CCCcEEEEeeCCCCCCCCCCCHHHHHHHHHHHHHCC--CCeEEEEEccc-CCCCCC-chHHHHhhcCCCeEEEecccccc
Q psy10760 85 PDNSIFFLETSCTHADGVELTLRQACSIESAAMMNP--GVQVYVVVIAS-VRNRTR-NPLIDRLYEYQNVHIVQVDLGRY 160 (356)
Q Consensus 85 ~~~~IfF~ets~~~~~~~~l~~rq~~aIeSaar~nP--~~~V~ll~~~~-~~~~~~-~~~i~~L~~ypnv~i~~ld~~~~ 160 (356)
.+.++.||--+++. ++. |...+...|| +.+|.|..-.. +.-|.+ .+.++.|+... . .+.|
T Consensus 371 ~P~k~VFHiVTD~~----ny~-----aM~~WF~~n~~~~A~V~V~nie~f~wln~~~~pvl~qles~~---~----~~~y 434 (657)
T PLN02910 371 EPQKHVFHIVTDKL----NFA-----AMKMWFIINPPAKATIQVENIDDFKWLNSSYCSVLRQLESAR---I----KEYY 434 (657)
T ss_pred CccceEEEEecCcc----ccH-----HHHHHHhhCCCccceEEEeehhhcccccccccHHHHHHhhhh---h----hhhh
Confidence 56788888888875 554 4555666776 45565543221 111211 24444442210 0 1112
Q ss_pred ccCCCccc---cchhhhhccCCCcchhhhhHHHHHHHHHhC----cEEEecCcccccccccc
Q psy10760 161 FQNTPLHG---FYTQDAILTSLWPLSHMSDLLRYVTLYKYG----GTYLDLDFIVIKSLESL 215 (356)
Q Consensus 161 ~~~tpl~~---w~~~~~~~~~~~~~~h~SD~~R~~~L~k~G----GiYlD~Dv~~lr~l~~l 215 (356)
|.+.-... --.+..+++.+| .....++|+.+---+- =||||+|++|.++|.+|
T Consensus 435 f~~~~~~~~~~~~~~~k~r~p~y--lS~lnY~Rf~LPelLp~l~KVLYLD~DVVV~gDLseL 494 (657)
T PLN02910 435 FKANHPSSLSAGADNLKYRNPKY--LSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPL 494 (657)
T ss_pred hhccccccccccccccccCCcch--hhHHHHHHHHHHHHhhhcCeEEEEeCCEEecCchHHH
Confidence 22110000 000112222333 3467889987633322 68999999999999998
No 35
>PLN02769 Probable galacturonosyltransferase
Probab=22.39 E-value=35 Score=36.79 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=25.7
Q ss_pred hhhhHHHHHH--HHH-h-CcEEEecCccccccccccc
Q psy10760 184 HMSDLLRYVT--LYK-Y-GGTYLDLDFIVIKSLESLH 216 (356)
Q Consensus 184 h~SD~~R~~~--L~k-~-GGiYlD~Dv~~lr~l~~l~ 216 (356)
.....+|+.+ +.. . ==||||+|+++.++|.+|.
T Consensus 436 S~~nh~RfyIPELLP~LdKVLYLD~DVVVqgDLseLw 472 (629)
T PLN02769 436 SVFSHSHFLLPEIFKKLKKVVVLDDDVVVQRDLSFLW 472 (629)
T ss_pred cHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHh
Confidence 3678899877 333 2 3589999999999999983
No 36
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=20.04 E-value=33 Score=23.07 Aligned_cols=10 Identities=30% Similarity=0.730 Sum_probs=7.3
Q ss_pred HhCcEEEecC
Q psy10760 196 KYGGTYLDLD 205 (356)
Q Consensus 196 k~GGiYlD~D 205 (356)
+-||+|+|.+
T Consensus 24 ~C~G~W~d~~ 33 (41)
T PF13453_consen 24 SCGGIWFDAG 33 (41)
T ss_pred CCCeEEccHH
Confidence 4588888865
Done!