RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10760
         (356 letters)



>2bvl_A Toxin B; glycosyltransferase; HET: GLC UDP TBR; 2.2A {Clostridium
           difficile} SCOP: c.68.1.22 PDB: 2bvm_A* 2vkh_A* 2vkd_A*
           2vl8_A*
          Length = 543

 Score = 40.9 bits (94), Expect = 5e-04
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 161 FQNTPLHGFYTQDAILTSLWPLSHMSDLLRYVTLYKYGGTYLDLDFI 207
           F+N      Y Q+ +       +  SD+LR   L + GG YLD+D +
Sbjct: 246 FKNGESFNLYEQELVERWNLAAA--SDILRISALKEIGGMYLDVDML 290


>4dmv_A Toxin A, TCDA; transferase; 1.50A {Clostridium difficile} PDB:
           4dmw_A* 3ss1_A 3srz_A
          Length = 556

 Score = 40.9 bits (94), Expect = 5e-04
 Identities = 30/184 (16%), Positives = 60/184 (32%), Gaps = 23/184 (12%)

Query: 45  KQPLRYIEYWRSGYRVQNINC----------VLSGVEKDFAFDDI---TRLDVPDNSIFF 91
              L YI+ W       NI             L     + +  +       ++ +     
Sbjct: 123 DIALEYIKQWADINAEYNIKLWYDSEAFLVNTLKKAIVESSTTEALQLLEEEIQNPQFDN 182

Query: 92  LETSCTHADGVELTLRQACSIESAAMMNPGVQVYVVVIASVRNRTRNPLIDRLYEYQN-- 149
           ++      + +    ++  +   + +  P V     +I S      N     L  Y+   
Sbjct: 183 MKFYKKRMEFIYDRQKRFINYYKSQINKPTVPTIDDIIKSHLVSEYNRDETVLESYRTNS 242

Query: 150 ------VHIVQVDLGRYFQNTPLHGFYTQDAILTSLWPLSHMSDLLRYVTLYKYGGTYLD 203
                  H + +     F    L   Y+Q+ +      L+  SD++R + L  +GG YLD
Sbjct: 243 LRKINSNHGIDIRANSLFTEQELLNIYSQELLNR--GNLAAASDIVRLLALKNFGGVYLD 300

Query: 204 LDFI 207
           +D +
Sbjct: 301 VDML 304


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 40.4 bits (94), Expect = 9e-04
 Identities = 70/401 (17%), Positives = 132/401 (32%), Gaps = 115/401 (28%)

Query: 32  LSPRFLNHFVFRVKQP-------------LRYIEYWRSGY-RVQNINCVLSGVEKDFAFD 77
           L  +FL  +V  + +P             L   E   + Y    +I+ + + + ++    
Sbjct: 60  LVGKFL-GYVSSLVEPSKVGQFDQVLNLCLTEFE---NCYLEGNDIHALAAKLLQENDTT 115

Query: 78  DITRLDVPDNSIFFLETSCTHAD-----GVELTLRQACSIESAAMM-------NPGV--- 122
            +   ++  N  +   T+   A           L +A    +A ++       N      
Sbjct: 116 LVKTKELIKN--YI--TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171

Query: 123 ------QVYVVVIASVRNRTR---NPLIDRLYEYQNVHIVQVDLGRYFQN---TPLHGFY 170
                 Q Y V++  +   +    + LI    + + V    +++  + +N   TP   + 
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231

Query: 171 TQDAILTSLWPLSHMSDLLRY-VTLYKYGGTYLDLDFIVIKSLESLHNYAGAESSSVVAA 229
               I  S  PL  +  L  Y VT    G T  +L    +K   + H      S  +V A
Sbjct: 232 LSIPI--S-CPLIGVIQLAHYVVTAKLLGFTPGEL-RSYLKGA-TGH------SQGLVTA 280

Query: 230 GVIHLDKDHWLS--GAALRELRDNFKTTEW-GANG----------PGVLTRLLKAECKPQ 276
             I      W S   +  + +   F    + G             P +L   L+      
Sbjct: 281 VAIAETDS-WESFFVSVRKAITVLF----FIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335

Query: 277 SYAHNIISCRNFTIYPPRFFYPVHWEHWADYLNETNA--PAT----MSLF--RDSY---- 324
           S    ++S  N T            E   DY+N+TN+  PA     +SL     +     
Sbjct: 336 SP---MLSISNLTQ-----------EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG 381

Query: 325 ---ALHVWNSFTKRVPVKLGSEQ---PYAQ----IARRYCP 355
              +L+  N   ++     G +Q   P+++     + R+ P
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422



 Score = 36.6 bits (84), Expect = 0.015
 Identities = 43/269 (15%), Positives = 79/269 (29%), Gaps = 75/269 (27%)

Query: 80  TRLDVPDNSIF--------FLETSCTHADGVELTLRQACSIESAAMMNPGVQVYVVVIAS 131
             L VP  S F        F +      +G           E           ++  ++S
Sbjct: 18  HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK-------FLGYVSS 70

Query: 132 VRNRTRNPLIDRLYEYQNVHIVQVDLGRYFQNTPLHGFYTQD--AILTSLWPLSHMSDLL 189
                   L++     Q   ++ + L   F+N  L G    D  A+   L    + + L+
Sbjct: 71  --------LVEPSKVGQFDQVLNLCL-TEFENCYLEG---NDIHALAAKL-LQENDTTLV 117

Query: 190 RYVTLYKYGGTYLDLDFIVIKSLESLHN-----YAGAESSSVVAA----GVIHLDKDHWL 240
           +   L K    Y+    +  +  +   N       G  ++ +VA     G      D + 
Sbjct: 118 KTKELIK---NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT----DDYF 170

Query: 241 SGAALRELRDNFKTTEWGANGPGVLTRLLK-AECKPQSYAHNIISCRNFTIYPPRFFYPV 299
                 ELRD ++T         ++  L+K +           +           F   +
Sbjct: 171 -----EELRDLYQT------YHVLVGDLIKFSAETLSELIRTTLDA------EKVFTQGL 213

Query: 300 HWEHW---------ADYLNETNAPATMSL 319
           +   W          DYL   + P +  L
Sbjct: 214 NILEWLENPSNTPDKDYL--LSIPISCPL 240



 Score = 30.8 bits (69), Expect = 0.88
 Identities = 21/121 (17%), Positives = 35/121 (28%), Gaps = 31/121 (25%)

Query: 222  ESSSVVAAGVIHLDKDHWLSGAALRELRDN--FKTTEWGANGPGVLTRLLKAECKPQSYA 279
            ++S           +D W    A    +D   F   +   N P  LT     E K +   
Sbjct: 1637 KTSKAA--------QDVW--NRADNHFKDTYGFSILDIVINNPVNLTIHFGGE-KGKRIR 1685

Query: 280  HNIIS-----CRNFTIYPPRFFYPVH-------WEHWADYLNET-NA-PA--TMS--LFR 321
             N  +       +  +   + F  ++       +      L+ T    PA   M    F 
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE 1745

Query: 322  D 322
            D
Sbjct: 1746 D 1746


>2vk9_A Alpha-toxin; glycosyltransferase; 2.85A {Clostridium novyi} SCOP:
           c.68.1.22
          Length = 551

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 161 FQNTPLHGFYTQDAILTSLWPLSHMSDLLRYVTLYKYGGTYLDLDFI 207
                L  +Y Q+ I T    L+  SD+LR   L KYGG Y DLDF+
Sbjct: 244 ILTNKLKSYYYQELIQT--NNLAAASDILRIAILKKYGGVYCDLDFL 288


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 38.7 bits (89), Expect = 0.003
 Identities = 52/357 (14%), Positives = 90/357 (25%), Gaps = 131/357 (36%)

Query: 43  RVKQP-LRYIEYWRSGYRVQNINCVLSGVEKDFAFDDITRLDVPDNSIFFLETSCTHADG 101
             +QP +    Y     R+ N N V       FA  +++RL                   
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQV-------FAKYNVSRLQP----------------- 136

Query: 102 VELTLRQA-CSIESAAMMNPGVQVY--------VVVIASVRNRTRNPLIDRLYEYQNVHI 152
             L LRQA   +         V +          V +    +        ++    +  I
Sbjct: 137 -YLKLRQALLELRP----AKNVLIDGVLGSGKTWVALDVCLS-------YKVQCKMDFKI 184

Query: 153 VQVDLGRYFQNTPLHGFYTQDAILTSLWPLSHMSD-----------------------LL 189
             ++L     N+P       + +L  L  L +  D                       L 
Sbjct: 185 FWLNLKNC--NSP-------ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 190 RYVTLYKYGGTYLDLD----------F------IVIKSLESLHNYAGAESSSVVAAGVIH 233
           R +    Y    L L           F      ++    + + +        + AA   H
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD-------FLSAATTTH 288

Query: 234 LDKDHWLSGAALRELRDNFKTTEWGANGPGVLTRLLKAE-CKPQSYAHNII--SCRNFTI 290
           +  DH        E++                 + L  E         +II  S R+   
Sbjct: 289 ISLDHHSMTLTPDEVKSLL------LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG-- 340

Query: 291 YPPRFFYPVHWEHWADYLNET-NAPATMSL-------FRDSY-ALHVWNSFTKRVPV 338
                     W++W     +        SL       +R  +  L V   F     +
Sbjct: 341 -------LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV---FPPSAHI 387



 Score = 33.3 bits (75), Expect = 0.15
 Identities = 31/224 (13%), Positives = 64/224 (28%), Gaps = 68/224 (30%)

Query: 1   MHPHPAYLQRALLYLTAVCLTLSFLLGVHI-FLSP-----RFLNHFVFR--VKQPLRYIE 52
           +    A       +    C  L+ ++   +  L P      F    VF      P   + 
Sbjct: 337 IRDGLATWDN---WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393

Query: 53  -YWR--SGYRVQNINCVL---SGVEKDFAFDDITRLDVPDNSIFFLETSCTHADGVELTL 106
             W       V  +   L   S VEK            P  S   +      +    + L
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQ-----------PKESTISI-----PS----IYL 433

Query: 107 RQACSIESAAMMNPGVQVYVVVIASVRNRTRNPLIDRLYEYQNVHIVQVDLGRYFQNTPL 166
                +E+   ++           S+ +    P   + ++  ++    +D  +YF +   
Sbjct: 434 ELKVKLENEYALH----------RSIVDHYNIP---KTFDSDDLIPPYLD--QYFYS--- 475

Query: 167 HGFYTQDAILTSLWPLSHMSDLLRYVTLYKYGGTYLDLDFIVIK 210
           H  +             H+ ++     +  +   +LD  F+  K
Sbjct: 476 HIGH-------------HLKNIEHPERMTLFRMVFLDFRFLEQK 506


>1dqn_A Guanine phosphoribosyltransferase; protein-inhibitor complex, Mg
           IONS, pyrophosphate, transition state analogue; HET:
           IMU; 1.75A {Giardia intestinalis} SCOP: c.61.1.1 PDB:
           1dqp_A*
          Length = 230

 Score = 34.2 bits (79), Expect = 0.041
 Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 24/81 (29%)

Query: 185 MSDLLRYVTLYKYGGTYLDLDFIVIKSLESLHNYAGAESSSVVAAGVIHLDKD----HWL 240
            S L  ++T          L F+ + S      Y G    SVV      L +       +
Sbjct: 76  ASLLTVHLTF------PYTLHFVKVSS------YKGTRQESVVFD-EEDLKQLKEKREVV 122

Query: 241 -------SGAALRELRDNFKT 254
                  SG  +  +++  K 
Sbjct: 123 LIDEYVDSGHTIFSIQEQIKH 143


>1hgx_A HGXPRTASE, hypoxanthine-guanine-xanthine phosphoribosyltransferase;
           glycosyltransferase, purine salvage, transferase
           (glycosyltransferase); HET: 5GP; 1.90A {Tritrichomonas
           foetus} SCOP: c.61.1.1
          Length = 183

 Score = 33.2 bits (77), Expect = 0.073
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 17/53 (32%)

Query: 185 MSDLLRYVTLYKYGGTYLDLDFIVIKSLESLHNYAGAESSSVVAAGVIHLDKD 237
            +DLL+++         L+ D+I+  S      Y+G +S+     G + + KD
Sbjct: 53  YTDLLKHLDF------QLEPDYIICSS------YSGTKST-----GNLTISKD 88


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 32.6 bits (73), Expect = 0.087
 Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 2/21 (9%)

Query: 209 IKSLE-SLHNYAGAESSSVVA 228
           +K L+ SL  YA  +S+  +A
Sbjct: 22  LKKLQASLKLYA-DDSAPALA 41


>3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase,
           legionnaire'S disease, legionella pneum transferase;
           HET: MSE UPG; 1.70A {Legionella pneumophila} PDB:
           2wzg_A* 3jt1_A* 2wzf_A*
          Length = 525

 Score = 33.7 bits (76), Expect = 0.089
 Identities = 21/104 (20%), Positives = 48/104 (46%), Gaps = 3/104 (2%)

Query: 104 LTLRQACSIESAAMMNPGVQVYVVVIASVRNRTRNPLIDRLYEYQNVHIVQVDLGRYFQN 163
           +  +Q  +++      PG ++ ++  +S+ N   N  +    + QN+ ++ +D  +   +
Sbjct: 148 MPSKQQEALKRRREQYPGCKIRLIYSSSLLNPEANRQMKAFAKKQNISLIDIDSVKT--D 205

Query: 164 TPLHGFYTQD-AILTSLWPLSHMSDLLRYVTLYKYGGTYLDLDF 206
           +PL+     + A L      +  SDL R++      G Y+D+D 
Sbjct: 206 SPLYPLIKAELANLGMGGNPAAASDLCRWIPELFNEGFYVDIDL 249


>2ywu_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold,
           structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus
           thermophilus} PDB: 2ywt_A* 2yws_A* 3acb_A 3acc_A*
           3acd_A*
          Length = 181

 Score = 32.0 bits (74), Expect = 0.15
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 16/53 (30%)

Query: 185 MSDLLRYVTLYKYGGTYLDLDFIVIKSLESLHNYAGAESSSVVAAGVIHLDKD 237
           M+DL+R + L       L +DFI I S      Y  A  SS    G + L KD
Sbjct: 52  MADLVRAIPL------PLTMDFIAISS------YGNAFKSS----GEVELLKD 88


>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics,
           structural genomics consortium, metal-binding, nucleus,
           zinc-finger; 2.50A {Homo sapiens}
          Length = 437

 Score = 31.1 bits (70), Expect = 0.63
 Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 304 WADYLNETNA-PATMSLFRDSYALHVWNSFTKRVPV 338
           W +Y+N  +   A ++ F+ +     W   ++ V V
Sbjct: 14  WGNYINSNSFIAAPVTCFKHAPMGTCWGDISENVRV 49


>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin
           regulator, metal-binding, nucleus, transcript
           transcription regulation, zinc-finger; HET: MLZ; 2.10A
           {Homo sapiens} PDB: 3dbb_A* 3cey_A
          Length = 456

 Score = 30.8 bits (69), Expect = 0.67
 Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 1/34 (2%)

Query: 304 WADYLNETNA-PATMSLFRDSYALHVWNSFTKRV 336
           W  +L + +   A +S F+       W    K +
Sbjct: 12  WGKFLKDHSYKAAPVSCFKHVPLYDQWEDVMKGM 45


>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
           transport, acetylation, golgi apparatus, lipoprotein,
           membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
          Length = 223

 Score = 28.5 bits (64), Expect = 2.4
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 86  DNSIFFLETSCTHADGVE 103
           +N + F ETS  +++ V+
Sbjct: 147 ENQLLFTETSALNSENVD 164


>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin
           regulator, DNA-BIN metal-binding, nucleus, repressor,
           transcription; HET: MLZ SUC; 2.80A {Drosophila
           melanogaster}
          Length = 447

 Score = 29.2 bits (65), Expect = 2.5
 Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 304 WADYLNETNA-PATMSLFRDSYALHVWNSFTK 334
           W   L++ N   A ++ F  +    VW++   
Sbjct: 8   WLPRLSKENFNAAPVTCFPHAPGCEVWDNLGV 39


>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
           mixed alpha-beta protein, rossman fold, signaling
           protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
           c.37.1.11
          Length = 178

 Score = 28.1 bits (62), Expect = 3.1
 Identities = 6/31 (19%), Positives = 16/31 (51%)

Query: 126 VVVIASVRNRTRNPLIDRLYEYQNVHIVQVD 156
           V V+A++  R  +PL+  +       ++++ 
Sbjct: 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELT 161


>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl
           lysine, regulator, developmental protein, metal-binding,
           nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB:
           2r57_A* 2r5a_A* 2r5m_A*
          Length = 265

 Score = 28.4 bits (63), Expect = 3.3
 Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 2/32 (6%)

Query: 304 WADYLNETNA-PATMSLFRDSYALHVWNSFTK 334
           W  YL ET +  A    F+ +      N F  
Sbjct: 7   WDAYLEETGSEAAPAKCFKQAQN-PPNNDFKI 37


>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin
           modification, transcription repression, MBT repeat
           structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB:
           4fl6_A* 1wjs_A
          Length = 324

 Score = 28.4 bits (63), Expect = 4.1
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 287 NFTIYPPRFFYPVHWEHWADYLNETNA-PATMSLFRDSYALHVWNSF 332
              ++PP+  Y     +W  YL    A  A  SLF +     + + F
Sbjct: 99  GHKLHPPKG-YKEEEFNWQTYLKTCKAQAAPKSLFENQNITVIPSGF 144


>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
           dinucleotide binding oxidoreductase; HET: NAP; 1.75A
           {Drosophila melanogaster} SCOP: c.2.1.2
          Length = 267

 Score = 28.1 bits (63), Expect = 4.4
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 128 VIASVRNRTRNP-LIDRLYEYQNVHIVQVDL 157
           +  + RNR +   L D    + N+HI+++DL
Sbjct: 51  LFTTCRNREQAKELEDLAKNHSNIHILEIDL 81


>3nzm_A SSP DNAE intein, DNA polymerase III subunit alpha; disulfide bond,
           transferase; HET: DNA; 1.55A {Synechocystis SP} PDB:
           1zd7_A* 1zde_A*
          Length = 168

 Score = 27.4 bits (60), Expect = 4.9
 Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 2/90 (2%)

Query: 94  TSCTHADGVELTLRQACSIESAAMMNPGVQVYVVVIASVRNRTRNPLIDRLY-EYQNVHI 152
             C      E+   +   +    +++  +   V  +          +        Q V  
Sbjct: 8   PGCLSFG-TEILTVEYGPLPIGKIVSEEINCSVYSVDPEGRVYTQAIAQWHDRGEQEVLE 66

Query: 153 VQVDLGRYFQNTPLHGFYTQDAILTSLWPL 182
            +++ G   + T  H F T D  L ++  +
Sbjct: 67  YELEDGSVIRATSDHRFLTTDYQLLAIEEI 96


>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant
           brain tumor, transcription factor; 1.7A {Homo sapiens}
           SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
          Length = 243

 Score = 27.2 bits (60), Expect = 7.0
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)

Query: 303 HWADYLNETNA-PATMSLFRDSYALHVWNSFTK 334
           HW +YL ET +  A    FR S  +   N F  
Sbjct: 34  HWEEYLKETGSISAPSECFRQSQ-IPPVNDFKV 65


>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
           nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
           tepidum}
          Length = 535

 Score = 27.6 bits (61), Expect = 7.8
 Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 10/107 (9%)

Query: 85  PDNSIFFLETSCTHADGVELTLRQACSIESAAMMNPGVQVYVVVIASVRNRTRNPLIDRL 144
           P     F   SC + DGVE ++ ++  ++SA +          +  +    +   + ++L
Sbjct: 178 PAIENRFHRISCKNGDGVE-SIAKS--LKSAVLHPDS------IYGTPLAPSWIKVKEKL 228

Query: 145 YEYQNVHIVQVDLGRYFQNTPLHGFYTQDAILTSLWPLSHMSDLLRY 191
            E        ++     +     G        T L  L+++  +L +
Sbjct: 229 VEATTAQRY-LNRTEVEKICNDSGITDPGERKTLLGYLNNLGIVLYF 274


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0400    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,743,636
Number of extensions: 339321
Number of successful extensions: 864
Number of sequences better than 10.0: 1
Number of HSP's gapped: 857
Number of HSP's successfully gapped: 37
Length of query: 356
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 261
Effective length of database: 4,049,298
Effective search space: 1056866778
Effective search space used: 1056866778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (27.0 bits)