RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10760
         (356 letters)



>d2bvla1 c.68.1.22 (A:1-542) Toxin B {Clostridium difficile [TaxId:
           1496]}
          Length = 542

 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 161 FQNTPLHGFYTQDAILTSLWPLSHMSDLLRYVTLYKYGGTYLDLDFI 207
           F+N      Y Q+ +    W L+  SD+LR   L + GG YLD+D +
Sbjct: 246 FKNGESFNLYEQELVER--WNLAAASDILRISALKEIGGMYLDVDML 290


>d2vk9a1 c.68.1.22 (A:2-541) Alpha-toxin {Clostridium novyi [TaxId:
           1542]}
          Length = 540

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 147 YQNVHIVQVDLGRYFQNTPLHGFYTQDAILTSLWPLSHMSDLLRYVTLYKYGGTYLDLDF 206
              +    ++      N     +Y Q+ I T    L+  SD+LR   L KYGG Y DLDF
Sbjct: 230 MIAIGATDINTENILTNKLKS-YYYQELIQT--NNLAAASDILRIAILKKYGGVYCDLDF 286


>d1oz2a2 b.34.9.3 (A:314-421) Lethal(3)malignant brain tumor-like
           protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 108

 Score = 29.1 bits (65), Expect = 0.27
 Identities = 9/33 (27%), Positives = 10/33 (30%), Gaps = 1/33 (3%)

Query: 304 WADYLNETNA-PATMSLFRDSYALHVWNSFTKR 335
           W+ YL  T A  A   LF           F   
Sbjct: 3   WSQYLRSTRAQAAPKHLFVSQSHSPPPLGFQVG 35


>d1wjsa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3
           protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 127

 Score = 26.8 bits (59), Expect = 2.0
 Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 1/21 (4%)

Query: 303 HWADYLNETNA-PATMSLFRD 322
           +W  YL    A  A  SLF +
Sbjct: 91  NWQTYLKTCKAQAAPKSLFEN 111


>d1oz2a1 b.34.9.3 (A:204-313) Lethal(3)malignant brain tumor-like
           protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 110

 Score = 26.4 bits (58), Expect = 2.4
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)

Query: 303 HWADYLNETNA-PATMSLFRD 322
            W  YL E  A  A +SLF+D
Sbjct: 4   SWESYLEEQKAITAPVSLFQD 24


>d1oi1a1 b.34.9.3 (A:33-135) Scml2 protein {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 103

 Score = 26.4 bits (58), Expect = 2.7
 Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 1/21 (4%)

Query: 303 HWADYLNETNA-PATMSLFRD 322
           HW +YL ET +  A    FR 
Sbjct: 2   HWEEYLKETGSISAPSECFRQ 22


>d1sraa_ a.39.1.3 (A:) C-terminal (EC) domain of
           BM-40/SPARC/osteonectin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 151

 Score = 26.1 bits (57), Expect = 3.9
 Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 239 WLSGAALRELRDNFKTTEWG-ANGPGVLTRLLKAECKPQSYAHNI-ISCRNFTIYPPRFF 296
           WL    L  L +  +            + ++ + E + ++  H + +  R+F      + 
Sbjct: 18  WLKNV-LVTLYERDEDNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYI 76

Query: 297 YPVHWEH 303
           +PVHW+ 
Sbjct: 77  FPVHWQF 83


>d1oz2a3 b.34.9.3 (A:422-527) Lethal(3)malignant brain tumor-like
           protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 106

 Score = 24.8 bits (54), Expect = 7.3
 Identities = 7/22 (31%), Positives = 8/22 (36%), Gaps = 1/22 (4%)

Query: 303 HWADYLNETNA-PATMSLFRDS 323
            W  YL ET A       F+  
Sbjct: 2   CWEKYLEETGASAVPTWAFKVR 23


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,418,515
Number of extensions: 65839
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 12
Length of query: 356
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 270
Effective length of database: 1,226,816
Effective search space: 331240320
Effective search space used: 331240320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.5 bits)