BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10761
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 468 bits (1204), Expect = e-132, Method: Compositional matrix adjust.
Identities = 237/310 (76%), Positives = 265/310 (85%)
Query: 19 KVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLY 78
KVVKFSYMWTINNFSFCREEMGEV+KSSTFS+GANDKLKWCLRVNPKGLDEESKDYLSLY
Sbjct: 3 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLY 62
Query: 79 LLLVSCNKTEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELN 138
LLLVSC K+EVRAKFKFSILNAK EETKAMESQRAYRFVQGKDWGFKKFIRR FLLDE N
Sbjct: 63 LLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEAN 122
Query: 139 GLLPEDKLTIFCEVSVVADSVNISGQSNAAQFKVPDCRLADNLGALFEIQKFSDVTLYSA 198
GLLP+DKLT+FCEVSVV DSVNISGQ+ KVP+CRLAD LG L+E +F+D L A
Sbjct: 123 GLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVA 182
Query: 199 GQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTGRSTSXX 258
GQEF+AHKAILAA+SPVF AMFEHEMEE K NRV+I DV+ +V +EM+ FIYTG++ +
Sbjct: 183 GQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLD 242
Query: 259 XXXXXXXXXXXXXXXERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINT 318
ERLKVMCE+ALC+NLS+ENAAEILILADLHSADQLKTQA++FIN
Sbjct: 243 KMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINY 302
Query: 319 HATEVMDTVG 328
HAT+V++T G
Sbjct: 303 HATDVLETSG 312
>pdb|2CR2|A Chain A, Solution Structure Of N-Terminal Domain Of Speckle-Type
Poz Protein
Length = 159
Score = 269 bits (687), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 138/150 (92%), Positives = 144/150 (96%)
Query: 19 KVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLY 78
KVVKFSYMWTINNFSFCREEMGEV+KSSTFS+GANDKLKWCLRVNPKGLDEESKDYLSLY
Sbjct: 8 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLY 67
Query: 79 LLLVSCNKTEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELN 138
LLLVSC K+EVRAKFKFSILNAK EETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDE N
Sbjct: 68 LLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEAN 127
Query: 139 GLLPEDKLTIFCEVSVVADSVNISGQSNAA 168
GLLP+DKLT+FCEVSVV DSVNISGQS +
Sbjct: 128 GLLPDDKLTLFCEVSVVQDSVNISGQSGPS 157
>pdb|3IVB|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopmath-
Macroh2asbcpep1
pdb|3IVQ|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVQ|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Pucsbc1_pep1
Length = 145
Score = 251 bits (642), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 130/139 (93%), Positives = 135/139 (97%)
Query: 19 KVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLY 78
KVVKFSYMWTINNFSFCREEMGEV+KSSTFS+GANDKLKWCLRVNPKGLDEESKDYLSLY
Sbjct: 7 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLY 66
Query: 79 LLLVSCNKTEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELN 138
LLLVSC K+EVRAKFKFSILNAK EETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDE N
Sbjct: 67 LLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEAN 126
Query: 139 GLLPEDKLTIFCEVSVVAD 157
GLLP+DKLT+FCEVSVV D
Sbjct: 127 GLLPDDKLTLFCEVSVVQD 145
>pdb|3HQH|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep1
pdb|3HQL|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQL|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HQM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HSV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
pdb|3HSV|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
Length = 145
Score = 249 bits (636), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 129/139 (92%), Positives = 134/139 (96%)
Query: 19 KVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLY 78
KVVKFSYMWTINNFSFCREEMGEV+KSSTFS+GANDKLKWCLRVNPKGLDEESKDYLSLY
Sbjct: 7 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLY 66
Query: 79 LLLVSCNKTEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELN 138
LLLVSC K+EVRAKFKFSILNAK EETKAMESQRAYRFVQGKDWGFKKFIRR FLLDE N
Sbjct: 67 LLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEAN 126
Query: 139 GLLPEDKLTIFCEVSVVAD 157
GLLP+DKLT+FCEVSVV D
Sbjct: 127 GLLPDDKLTLFCEVSVVQD 145
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 201 bits (510), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 100/167 (59%), Positives = 122/167 (73%)
Query: 162 SGQSNAAQFKVPDCRLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFE 221
GQ+ KVP+CRLAD LG L+E +F+D L AGQEF+AHKAILAA+SPVF A FE
Sbjct: 6 GGQNTXNXVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFE 65
Query: 222 HEMEERKHNRVDIADVDADVLREMLRFIYTGRSTSXXXXXXXXXXXXXXXXXERLKVMCE 281
HE EE K NRV+I DV+ +V +E FIYTG++ + ERLKV CE
Sbjct: 66 HEXEESKKNRVEINDVEPEVFKEXXCFIYTGKAPNLDKXADDLLAAADKYALERLKVXCE 125
Query: 282 EALCTNLSIENAAEILILADLHSADQLKTQAIEFINTHATEVMDTVG 328
+ALC+NLS+ENAAEILILADLHSADQLKTQA++FIN HAT+V++T G
Sbjct: 126 DALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 172
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/140 (64%), Positives = 107/140 (76%)
Query: 171 KVPDCRLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHN 230
KVP+CRLAD LG L+E +F+D L AGQEF+AHKAILAA+SPVF AMFEHEMEE K N
Sbjct: 6 KVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKN 65
Query: 231 RVDIADVDADVLREMLRFIYTGRSTSXXXXXXXXXXXXXXXXXERLKVMCEEALCTNLSI 290
RV+I DV+ +V +EM+ FIYTG++ + ERLKVMCE+ALC+NLS+
Sbjct: 66 RVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSV 125
Query: 291 ENAAEILILADLHSADQLKT 310
ENAAEILILADLHSADQLKT
Sbjct: 126 ENAAEILILADLHSADQLKT 145
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 190 FSDVTLY---SAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDI------ADVDAD 240
F D+TL + G+EFRAH+++LAA + F + + E + RV++ + D
Sbjct: 50 FCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPD 109
Query: 241 VLREMLRFIYTGRSTSXXXXXXXXXXXXXXXXXERLKVMCEEALCTNLSIENAAEILILA 300
+ ++ ++YTGR RLK C E L L + N I LA
Sbjct: 110 TVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLA 169
Query: 301 DLHSADQLKTQAIEFINTHATEVM 324
+++ QL +A + I + +V+
Sbjct: 170 HMYTLSQLALKAADMIRRNFHKVI 193
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 9/144 (6%)
Query: 190 FSDVTLY---SAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDI------ADVDAD 240
F D+TL + G+EFRAH+++LAA + F + + E + RV+ + D
Sbjct: 32 FCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEXRKWSSEPGPEPD 91
Query: 241 VLREMLRFIYTGRSTSXXXXXXXXXXXXXXXXXERLKVMCEEALCTNLSIENAAEILILA 300
+ ++ + YTGR RLK C E L L + N I LA
Sbjct: 92 TVEAVIEYXYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLA 151
Query: 301 DLHSADQLKTQAIEFINTHATEVM 324
++ QL +A + I + +V+
Sbjct: 152 HXYTLSQLALKAADXIRRNFHKVI 175
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 190 FSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDI-ADVDADVLREMLRF 248
+ DV++ G F+AH+A+LAA S F +F + + V++ A V +++L F
Sbjct: 33 YCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPAAVQPQSFQQILSF 88
Query: 249 IYTGR 253
YTGR
Sbjct: 89 CYTGR 93
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 190 FSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFI 249
F DVT+ ++FRAHK IL+A S F H++ V+++ + A++ E+L +I
Sbjct: 31 FCDVTVIVEDRKFRAHKNILSASSTYF-----HQLFSVAGQVVELSFIRAEIFAEILNYI 85
Query: 250 YTGR 253
Y+ +
Sbjct: 86 YSSK 89
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 190 FSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFI 249
F DVT+ ++FRAHK IL+A S F H++ V+++ + A++ E+L +I
Sbjct: 33 FCDVTVIVEDRKFRAHKNILSASSTYF-----HQLFSVAGQVVELSFIRAEIFAEILNYI 87
Query: 250 YTGR 253
Y+ +
Sbjct: 88 YSSK 91
>pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 2/153 (1%)
Query: 176 RLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHE--MEERKHNRVD 233
RL L + E +F D L G+E K ILAA SP + ++ +++
Sbjct: 17 RLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIE 76
Query: 234 IADVDADVLREMLRFIYTGRSTSXXXXXXXXXXXXXXXXXERLKVMCEEALCTNLSIENA 293
+ + V RE+L +I++G+ LK +C E L ++ EN
Sbjct: 77 LEGISVXVXREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENC 136
Query: 294 AEILILADLHSADQLKTQAIEFINTHATEVMDT 326
I A + + A E++ TH +V T
Sbjct: 137 IGIRDFALHYCLHHVHYLATEYLETHFRDVSST 169
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 38.1 bits (87), Expect = 0.007, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 32/64 (50%)
Query: 192 DVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYT 251
DV + G+EF H+++LAA S F +F + N +I V A+ L ++ F YT
Sbjct: 27 DVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYT 86
Query: 252 GRST 255
T
Sbjct: 87 ATLT 90
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 192 DVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRV--DIADVDADVLREMLRFI 249
D T+ +F+AH+ +LA+ S F A++ E N V D + V AD +++L FI
Sbjct: 24 DCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSE----NNVFLDQSQVKADGFQKLLEFI 79
Query: 250 YTG 252
YTG
Sbjct: 80 YTG 82
>pdb|3HVE|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 2/150 (1%)
Query: 176 RLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHE--MEERKHNRVD 233
RL L + E +F D L G+E K ILAA SP + ++ +++
Sbjct: 17 RLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIE 76
Query: 234 IADVDADVLREMLRFIYTGRSTSXXXXXXXXXXXXXXXXXERLKVMCEEALCTNLSIENA 293
+ + V RE+L +I++G+ LK +C E L ++ EN
Sbjct: 77 LEGISVXVXREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENC 136
Query: 294 AEILILADLHSADQLKTQAIEFINTHATEV 323
I A + + A E++ TH +V
Sbjct: 137 IGIRDFALHYCLHHVHYLATEYLETHFRDV 166
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%)
Query: 192 DVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYT 251
DV + G+EF H+++LAA S F +F + N +I V A+ L ++ F YT
Sbjct: 37 DVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYT 96
Query: 252 GRST 255
T
Sbjct: 97 ATLT 100
>pdb|2PPI|A Chain A, Structure Of The Btb (Tramtrack And Bric A Brac) Domain Of
Human Gigaxonin
Length = 144
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 160 NISGQSNAAQFKVPDCRLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAM 219
N+ QS A RL L + E +F D L G+E K ILAA SP
Sbjct: 17 NLYFQSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTK 76
Query: 220 FEHE--MEERKHNRVDIADVDADVLREMLRFIYTGR 253
+ ++ ++++ + V+RE+L +I++G+
Sbjct: 77 LNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQ 112
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 192 DVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYT 251
D T G F+AHKA+LAA S F +F ++++ +DI+ +A L ++L F+YT
Sbjct: 27 DCTFVVDGVHFKAHKAVLAACSEYFKMLF---VDQKDVVHLDIS--NAAGLGQVLEFMYT 81
Query: 252 GR 253
+
Sbjct: 82 AK 83
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 180 NLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDA 239
NL L +DV + + ++FRAHK +L A S +F ++F +++ + + ++D
Sbjct: 19 NLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDP 74
Query: 240 DVLRE----MLRFIYTGR 253
++ E +L F+YT R
Sbjct: 75 EINPEGFNILLDFMYTSR 92
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 180 NLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDA 239
NL L +DV + + ++FRAHK +L A S +F ++F +++ + + ++D
Sbjct: 22 NLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLK----CNLSVINLDP 77
Query: 240 DVLRE----MLRFIYTGR 253
++ E +L F+YT R
Sbjct: 78 EINPEGFCILLDFMYTSR 95
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 35.4 bits (80), Expect = 0.045, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 192 DVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYT 251
D T G F+AHKA+LAA S F +F ++++ +DI+ +A L ++L F+YT
Sbjct: 29 DCTFVVDGVHFKAHKAVLAACSEYFKMLF---VDQKDVVHLDIS--NAAGLGQVLEFMYT 83
Query: 252 GR 253
+
Sbjct: 84 AK 85
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 192 DVTLYSAGQEFRAHKAILAAQSPVF 216
DVT++ GQ FRAH+++LAA S F
Sbjct: 31 DVTIFVEGQRFRAHRSVLAACSSYF 55
>pdb|2BG9|E Chain E, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 172 VPDCRLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEME 225
+PD L +N+ FE+ +++V +Y+ G + AI + P+ + F + +
Sbjct: 86 LPDVVLENNVDGQFEVAYYANVLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQ 139
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 192 DVTLYSAGQEFRAHKAILAAQSPVF 216
DVT+ GQ FRAH+++LAA S F
Sbjct: 38 DVTVLVEGQRFRAHRSVLAACSSYF 62
>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 488
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 172 VPDCRLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEME 225
+PD L +N+ FE+ +++V +Y+ G + AI + P+ + F + +
Sbjct: 86 LPDVVLENNVDGQFEVAYYANVLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQ 139
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 190 FSDVTLYSAGQEFRAHKAILAAQSPVF 216
DVTL +EFRAH+A+LAA S F
Sbjct: 32 LCDVTLIVERKEFRAHRAVLAACSEYF 58
>pdb|2VKP|A Chain A, Crystal Structure Of Btb Domain From Btbd6
pdb|2VKP|B Chain B, Crystal Structure Of Btb Domain From Btbd6
Length = 109
Score = 31.6 bits (70), Expect = 0.75, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 204 AHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYT 251
AHK +LA S VF A F ++ E K + + I DV+ +L++ Y+
Sbjct: 26 AHKYVLAVGSSVFYAXFYGDLAEVK-SEIHIPDVEPAAFLILLKYXYS 72
>pdb|1BUO|A Chain A, Btb Domain From Plzf
Length = 121
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 190 FSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFI 249
DV + QEF AH+ +LA S +F +F +H +D + +++L +
Sbjct: 28 LCDVVIMVDSQEFHAHRTVLACTSKMFEILFH---RNSQHYTLDF--LSPKTFQQILEYA 82
Query: 250 YTG 252
YT
Sbjct: 83 YTA 85
>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM
PROMELOCYTIC Leukemia Zinc Finger Oncoprotein
Length = 116
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 190 FSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFI 249
DV + QEF AH+ +LA S +F +F +H +D + +++L +
Sbjct: 27 LCDVVIMVDSQEFHAHRTVLACTSKMFEILFH---RNSQHYTLDF--LSPKTFQQILEYA 81
Query: 250 YTG 252
YT
Sbjct: 82 YTA 84
>pdb|2XXN|A Chain A, Structure Of The Virf4-Hausp Traf Domain Complex
Length = 143
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 97 ILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEVSVVA 156
I+N + +E F + DWGF F+ + D G + +DK+T EV V A
Sbjct: 78 IINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFVQA 135
Query: 157 DS 158
D+
Sbjct: 136 DA 137
>pdb|2F1X|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
pdb|2F1X|B Chain B, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
Length = 161
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 97 ILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEVSVVA 156
I+N + +E F + DWGF F+ + D G + +DK+T EV V A
Sbjct: 92 IINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFVQA 149
Query: 157 DSVNIS 162
D+ S
Sbjct: 150 DAPGGS 155
>pdb|1YY6|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With An Ebna1 Peptide
pdb|1YZE|A Chain A, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|B Chain B, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|C Chain C, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|2FOJ|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 364-367
pdb|2FOO|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 359-362
pdb|2FOP|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With Mdm2 Peptide 147-150
pdb|3MQR|A Chain A, Crystal Structure Of The Usp7:hdmx(Ahss) Complex
pdb|3MQS|C Chain C, Crystal Structure Of The Usp7:hdm2(Psts) Complex
Length = 155
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 97 ILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEVSVVA 156
I+N + +E F + DWGF F+ + D G + +DK+T EV V A
Sbjct: 90 IINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFVQA 147
Query: 157 DS 158
D+
Sbjct: 148 DA 149
>pdb|2F1W|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Length = 158
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 97 ILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEVSVVA 156
I+N + +E F + DWGF F+ + D G + +DK+T EV V A
Sbjct: 92 IINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFVQA 149
Query: 157 DS 158
D+
Sbjct: 150 DA 151
>pdb|2F1Y|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A Mdm2 Peptide
Length = 159
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 97 ILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEVSVVA 156
I+N + +E F + DWGF F+ + D G + +DK+T EV V A
Sbjct: 92 IINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFVQA 149
Query: 157 D 157
D
Sbjct: 150 D 150
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp
pdb|2F1Z|B Chain B, Crystal Structure Of Hausp
Length = 522
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 97 ILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEVSVVA 156
I+N + +E F + DWGF F+ + D G + +DK+T EV V A
Sbjct: 102 IINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTF--EVFVQA 159
Query: 157 DS 158
D+
Sbjct: 160 DA 161
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The Krueppel
Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 28.1 bits (61), Expect = 7.9, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 176 RLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIA 235
R+ L E ++ D TL G F+AH ++LA S F +++ + V +
Sbjct: 10 RVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLY----GDGSGGSVVLP 65
Query: 236 DVDADVLREMLRFIYTG 252
A++ +L F YTG
Sbjct: 66 AGFAEIFGLLLDFFYTG 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,083,033
Number of Sequences: 62578
Number of extensions: 319193
Number of successful extensions: 820
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 782
Number of HSP's gapped (non-prelim): 36
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)