Query psy10761
Match_columns 365
No_of_seqs 310 out of 2487
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 17:51:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10761.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10761hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 100.0 1.3E-27 2.7E-32 234.2 18.1 166 175-345 10-177 (557)
2 cd03774 MATH_SPOP Speckle-type 100.0 2E-27 4.4E-32 191.6 14.4 138 19-156 1-138 (139)
3 KOG4441|consensus 99.9 1.3E-26 2.7E-31 226.4 17.2 160 175-334 21-180 (571)
4 PHA03098 kelch-like protein; P 99.9 1.5E-26 3.3E-31 227.7 16.3 151 186-343 5-157 (534)
5 PHA02790 Kelch-like protein; P 99.9 7.5E-27 1.6E-31 225.6 13.4 154 178-333 10-167 (480)
6 KOG4350|consensus 99.9 5.8E-27 1.3E-31 207.1 11.4 168 176-346 30-200 (620)
7 cd03779 MATH_TRAF1 Tumor Necro 99.9 3.6E-22 7.9E-27 159.7 11.7 130 23-153 1-147 (147)
8 cd03772 MATH_HAUSP Herpesvirus 99.9 8.9E-22 1.9E-26 158.2 12.9 127 22-156 2-134 (137)
9 cd03777 MATH_TRAF3 Tumor Necro 99.9 1E-21 2.3E-26 163.6 12.2 132 17-153 33-184 (186)
10 cd03773 MATH_TRIM37 Tripartite 99.9 1E-21 2.2E-26 157.1 11.7 123 23-153 5-130 (132)
11 cd03780 MATH_TRAF5 Tumor Necro 99.9 1.4E-21 3E-26 157.2 12.0 127 23-152 1-147 (148)
12 cd00270 MATH_TRAF_C Tumor Necr 99.9 1.9E-21 4.2E-26 158.8 10.2 128 23-153 1-149 (149)
13 cd03776 MATH_TRAF6 Tumor Necro 99.9 2.2E-21 4.7E-26 157.8 10.1 126 23-153 1-147 (147)
14 cd03781 MATH_TRAF4 Tumor Necro 99.8 4.9E-21 1.1E-25 156.4 10.4 128 23-153 1-154 (154)
15 cd03775 MATH_Ubp21p Ubiquitin- 99.8 2E-20 4.3E-25 149.6 11.9 119 24-152 2-133 (134)
16 KOG2075|consensus 99.8 5.6E-20 1.2E-24 166.8 15.9 177 168-345 92-274 (521)
17 PF00651 BTB: BTB/POZ domain; 99.8 4.9E-20 1.1E-24 142.8 8.6 107 181-287 1-110 (111)
18 cd03778 MATH_TRAF2 Tumor Necro 99.8 1.5E-19 3.3E-24 146.0 11.6 135 16-152 12-163 (164)
19 cd03771 MATH_Meprin Meprin fam 99.8 2.2E-19 4.9E-24 146.2 12.3 125 23-153 2-167 (167)
20 KOG4591|consensus 99.8 5.7E-19 1.2E-23 142.4 11.6 163 176-345 52-219 (280)
21 cd00121 MATH MATH (meprin and 99.8 6.5E-18 1.4E-22 133.6 11.9 122 23-153 1-126 (126)
22 KOG4682|consensus 99.8 1E-17 2.2E-22 148.8 13.1 162 181-350 60-225 (488)
23 PF00917 MATH: MATH domain; I 99.7 2.3E-17 5E-22 129.4 10.0 114 29-154 1-119 (119)
24 KOG0783|consensus 99.7 1.7E-17 3.6E-22 158.8 10.1 162 188-349 708-876 (1267)
25 smart00225 BTB Broad-Complex, 99.7 5.9E-17 1.3E-21 119.9 9.4 90 192-281 1-90 (90)
26 cd03782 MATH_Meprin_Beta Mepri 99.6 2.6E-15 5.7E-20 120.0 10.5 125 23-152 2-166 (167)
27 cd03783 MATH_Meprin_Alpha Mepr 99.6 3.6E-15 7.8E-20 120.0 10.3 127 23-153 2-167 (167)
28 smart00061 MATH meprin and TRA 99.5 2.8E-13 6E-18 101.5 9.7 90 25-128 2-95 (95)
29 KOG1987|consensus 99.5 5.7E-13 1.2E-17 121.6 13.6 233 27-333 8-248 (297)
30 COG5077 Ubiquitin carboxyl-ter 99.1 1E-09 2.2E-14 105.4 10.5 125 22-157 38-173 (1089)
31 KOG0783|consensus 98.8 5.6E-09 1.2E-13 101.3 6.5 111 171-281 535-682 (1267)
32 KOG0511|consensus 98.8 5.6E-08 1.2E-12 86.7 10.0 134 200-334 301-444 (516)
33 KOG2838|consensus 98.4 5.3E-07 1.1E-11 77.2 6.1 118 176-293 221-393 (401)
34 KOG2838|consensus 98.3 1.8E-06 3.8E-11 74.1 6.8 107 171-277 111-222 (401)
35 KOG2716|consensus 98.1 1.7E-05 3.6E-10 67.9 9.3 94 193-286 7-103 (230)
36 PF02214 BTB_2: BTB/POZ domain 97.9 1.7E-05 3.7E-10 59.0 5.2 87 193-280 1-94 (94)
37 PF11822 DUF3342: Domain of un 97.5 0.00017 3.7E-09 64.4 5.9 88 200-287 14-103 (317)
38 KOG3473|consensus 97.5 0.0006 1.3E-08 49.1 6.8 74 198-272 25-111 (112)
39 smart00512 Skp1 Found in Skp1 97.2 0.002 4.2E-08 48.8 7.3 58 193-251 4-63 (104)
40 PF07707 BACK: BTB And C-termi 97.2 0.00094 2E-08 50.3 5.6 50 293-345 1-50 (103)
41 KOG1863|consensus 96.8 0.0013 2.9E-08 69.9 4.9 131 16-157 20-154 (1093)
42 PF03931 Skp1_POZ: Skp1 family 96.8 0.0066 1.4E-07 41.1 6.4 56 193-251 3-59 (62)
43 KOG0511|consensus 96.7 0.005 1.1E-07 55.8 6.6 102 178-281 134-239 (516)
44 smart00875 BACK BTB And C-term 96.4 0.0054 1.2E-07 45.7 4.4 49 293-344 1-49 (101)
45 KOG1724|consensus 96.4 0.025 5.4E-07 46.1 8.4 91 197-288 12-127 (162)
46 KOG0297|consensus 96.0 0.0041 8.9E-08 58.6 2.4 84 16-100 273-365 (391)
47 KOG2714|consensus 95.7 0.043 9.4E-07 50.8 7.4 86 193-278 13-102 (465)
48 KOG1778|consensus 95.4 0.011 2.4E-07 53.5 2.7 145 192-337 28-175 (319)
49 KOG1665|consensus 95.3 0.057 1.2E-06 45.6 6.2 91 192-282 10-105 (302)
50 KOG2715|consensus 94.6 0.2 4.4E-06 40.3 7.3 95 193-287 23-121 (210)
51 COG5201 SKP1 SCF ubiquitin lig 91.5 1.2 2.7E-05 34.2 7.2 95 192-289 3-123 (158)
52 PF01466 Skp1: Skp1 family, di 90.6 0.64 1.4E-05 32.9 4.8 47 257-303 12-61 (78)
53 KOG2075|consensus 85.4 2.1 4.6E-05 40.6 5.9 58 288-348 185-247 (521)
54 PF11822 DUF3342: Domain of un 78.5 1.2 2.6E-05 40.3 1.6 42 286-327 70-111 (317)
55 KOG2723|consensus 76.0 7.2 0.00016 33.6 5.5 94 189-283 6-105 (221)
56 PF07707 BACK: BTB And C-termi 74.2 8.8 0.00019 28.2 5.2 59 262-320 2-74 (103)
57 PF00651 BTB: BTB/POZ domain; 69.5 7.6 0.00017 28.9 4.0 30 290-319 81-110 (111)
58 KOG4350|consensus 62.9 23 0.0005 33.2 6.2 70 213-286 93-175 (620)
59 KOG3840|consensus 57.9 13 0.00028 33.3 3.6 84 190-273 95-184 (438)
60 PHA03098 kelch-like protein; P 57.0 29 0.00063 34.4 6.5 33 287-319 72-104 (534)
61 PHA02713 hypothetical protein; 44.2 44 0.00094 33.5 5.4 41 279-319 81-122 (557)
62 KOG4682|consensus 36.3 35 0.00076 32.1 3.0 32 256-287 170-201 (488)
63 PHA02790 Kelch-like protein; P 32.6 85 0.0018 30.7 5.3 43 277-319 74-119 (480)
64 smart00875 BACK BTB And C-term 31.9 61 0.0013 23.2 3.3 26 262-287 2-27 (101)
65 PF01466 Skp1: Skp1 family, di 30.1 1.6E+02 0.0035 20.5 5.0 38 281-320 6-43 (78)
66 PRK00927 tryptophanyl-tRNA syn 28.7 4.7E+02 0.01 24.2 9.2 42 303-347 268-309 (333)
67 PF03000 NPH3: NPH3 family; I 28.3 2E+02 0.0043 25.6 6.3 65 236-300 67-132 (258)
68 PF06887 DUF1265: Protein of u 23.1 1.1E+02 0.0024 19.1 2.6 34 291-324 11-45 (48)
69 KOG4441|consensus 22.0 1.6E+02 0.0035 29.6 5.1 32 287-318 101-132 (571)
70 PF12793 SgrR_N: Sugar transpo 21.0 1.3E+02 0.0028 23.0 3.3 38 328-365 24-61 (115)
71 PF02519 Auxin_inducible: Auxi 20.7 3.6E+02 0.0078 20.0 5.9 54 193-249 41-99 (100)
72 TIGR02425 decarb_PcaC 4-carbox 20.2 4.1E+02 0.009 20.5 10.6 73 233-305 27-104 (123)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.95 E-value=1.3e-27 Score=234.22 Aligned_cols=166 Identities=20% Similarity=0.318 Sum_probs=153.4
Q ss_pred hhHHHHHHHhhhcCCCccEEEEec-CeEEehhHHHHhccCHHHHHhccccccccC-CCeEEEccCCHHHHHHHhHhhccC
Q psy10761 175 CRLADNLGALFEIQKFSDVTLYSA-GQEFRAHKAILAAQSPVFMAMFEHEMEERK-HNRVDIADVDADVLREMLRFIYTG 252 (365)
Q Consensus 175 ~~l~~~l~~l~~~~~~~Dv~i~~~-~~~~~~hk~iL~~~S~~F~~l~~~~~~e~~-~~~i~l~~~~~~~f~~~L~~iY~~ 252 (365)
..+.+.|.+|+.++.++||+|.++ |++|+|||.|||++|+||++||.++++|.. +++|.|.++++++|+.+|+|+||+
T Consensus 10 ~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~ 89 (557)
T PHA02713 10 RRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNR 89 (557)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCC
Confidence 356789999999999999999997 899999999999999999999999999864 789999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCcHHHHHHHHHHHHHcHHHHHCCccHHHH
Q psy10761 253 RSTSLDKMADDLLAAADKYALERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINTHATEVMDTVGWKQM 332 (365)
Q Consensus 253 ~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~~~~l 332 (365)
. ++.+++.++|.+|++|+++.|++.|+++|.+.++.+||+.++.+|..+.+..|.+.|.+|+.+||.++.++++|.+|
T Consensus 90 ~--i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L 167 (557)
T PHA02713 90 H--ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKT 167 (557)
T ss_pred C--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhC
Confidence 7 57899999999999999999999999999999999999999999999999899999999999999999999999988
Q ss_pred HhhChHHHHHHHH
Q psy10761 333 ILSHPHLIAEAFR 345 (365)
Q Consensus 333 ~~~~~~~~~~l~~ 345 (365)
+. +.+.+++.
T Consensus 168 ~~---~~l~~lL~ 177 (557)
T PHA02713 168 VF---EILFDIIS 177 (557)
T ss_pred CH---HHHHHHhc
Confidence 74 44554444
No 2
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.95 E-value=2e-27 Score=191.64 Aligned_cols=138 Identities=92% Similarity=1.447 Sum_probs=117.5
Q ss_pred EEEEEEEEEEEcccccccccCCCeeeccccccCCCCCccEEEEEecCCCCCCCCCeEEEEEEeecCCCceEEEEEEEEEE
Q psy10761 19 KVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNKTEVRAKFKFSIL 98 (365)
Q Consensus 19 ~~~~~~~~w~I~nfs~~~~~~~~~~~S~~F~~~g~~~~~W~l~l~p~g~~~~~~~~lsl~L~~~~~~~~~~~~~~~~~l~ 98 (365)
++..++|+|+|+|||.+.+..|+++.|++|.+||+++++|+|.+||+|..+++.+++|+||.+..++.+++.|+|+|+|+
T Consensus 1 ~~~~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~~~~~v~a~f~~~l~ 80 (139)
T cd03774 1 KVVKFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSIL 80 (139)
T ss_pred CceEEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccCCCCcEEEEEEEEEE
Confidence 36789999999999998756688999999999997667999999999987667899999999877666789999999999
Q ss_pred eccCCccccccccceeeeccCCCcccceeeecccccccccCCCCCCeEEEEEEeEeee
Q psy10761 99 NAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEVSVVA 156 (365)
Q Consensus 99 ~~~~~~~~~~~~~~~~~f~~~~~~G~~~fi~~~~l~~~~~~~l~dd~l~i~~~v~v~~ 156 (365)
|+++.+.........+.|....+|||..|+++++|.++.+||+.||.++|+|+|.|+.
T Consensus 81 n~~~~~~~~~~~~~~~~f~~~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 81 NAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred ecCCCeeeeecccCcEeCCCCCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 9987654333333346666677899999999999987778999999999999999964
No 3
>KOG4441|consensus
Probab=99.94 E-value=1.3e-26 Score=226.41 Aligned_cols=160 Identities=33% Similarity=0.441 Sum_probs=155.9
Q ss_pred hhHHHHHHHhhhcCCCccEEEEecCeEEehhHHHHhccCHHHHHhccccccccCCCeEEEccCCHHHHHHHhHhhccCCC
Q psy10761 175 CRLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTGRS 254 (365)
Q Consensus 175 ~~l~~~l~~l~~~~~~~Dv~i~~~~~~~~~hk~iL~~~S~~F~~l~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY~~~~ 254 (365)
..+.+.++.+.+.+.++||++.+++++|+|||.|||+.|+||++||.++++|+.+.+|.+.++++.+++.+|+|+||+.+
T Consensus 21 ~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i 100 (571)
T KOG4441|consen 21 KFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKL 100 (571)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceE
Confidence 36778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCcHHHHHHHHHHHHHcHHHHHCCccHHHHHh
Q psy10761 255 TSLDKMADDLLAAADKYALERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINTHATEVMDTVGWKQMIL 334 (365)
Q Consensus 255 ~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~~~~l~~ 334 (365)
.++.+++++||.+|+.|+++.+.+.|.+||.+.++++||+.+..+|+.|++.+|.+.+..|+.+||.++.++++|.+|+.
T Consensus 101 ~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~ 180 (571)
T KOG4441|consen 101 EISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSL 180 (571)
T ss_pred EechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999874
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.94 E-value=1.5e-26 Score=227.73 Aligned_cols=151 Identities=21% Similarity=0.388 Sum_probs=142.3
Q ss_pred hcCCCccEEEEe--cCeEEehhHHHHhccCHHHHHhccccccccCCCeEEEccCCHHHHHHHhHhhccCCCCCcHHHHHH
Q psy10761 186 EIQKFSDVTLYS--AGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTGRSTSLDKMADD 263 (365)
Q Consensus 186 ~~~~~~Dv~i~~--~~~~~~~hk~iL~~~S~~F~~l~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~~~ 263 (365)
.++.+||++|.+ +|++|+|||.||+++|+||++||.+++. +.+|.|++ ++++|+.+|+|+|+|.+.++.+++.+
T Consensus 5 ~~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~ 80 (534)
T PHA03098 5 ELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKD 80 (534)
T ss_pred ccCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHH
Confidence 378899999998 9999999999999999999999999887 67899999 99999999999999999999999999
Q ss_pred HHHHHHhcChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCcHHHHHHHHHHHHHcHHHHHCCccHHHHHhhChHHHHHH
Q psy10761 264 LLAAADKYALERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINTHATEVMDTVGWKQMILSHPHLIAEA 343 (365)
Q Consensus 264 ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~~~~l~~~~~~~~~~l 343 (365)
+|.+|++|+++.|++.|+++|.+.++.+||+.++.+|..|++..|.+.|.+||..|+.++.++++|.+|+. +.+.++
T Consensus 81 ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~---~~l~~l 157 (534)
T PHA03098 81 ILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSK---NELIKI 157 (534)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCH---HHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999974 444444
No 5
>PHA02790 Kelch-like protein; Provisional
Probab=99.94 E-value=7.5e-27 Score=225.60 Aligned_cols=154 Identities=20% Similarity=0.246 Sum_probs=141.5
Q ss_pred HHHHHHhhhcCCCccEEEEecCeEEehhHHHHhccCHHHHHhccccccccCCCeEEE--ccCCHHHHHHHhHhhccCCCC
Q psy10761 178 ADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDI--ADVDADVLREMLRFIYTGRST 255 (365)
Q Consensus 178 ~~~l~~l~~~~~~~Dv~i~~~~~~~~~hk~iL~~~S~~F~~l~~~~~~e~~~~~i~l--~~~~~~~f~~~L~~iY~~~~~ 255 (365)
-+++..+...+.++||++.++ ++|+|||.|||+.||||++||.+++.|+.+ +|.+ .++++++++.+|+|+|||++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~ 87 (480)
T PHA02790 10 CKNILALSMTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVY 87 (480)
T ss_pred hhhHHHHHhhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEE
Confidence 456667778899999987655 489999999999999999999999999854 5665 389999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCcHHHHHHHHHHHHHcHHHHHCC--ccHHHHH
Q psy10761 256 SLDKMADDLLAAADKYALERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINTHATEVMDT--VGWKQMI 333 (365)
Q Consensus 256 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~--~~~~~l~ 333 (365)
++.++++++|.+|++|+++.+++.|++||.+.++++||+.++.+|+.|++.+|.+.+.+||.+||.++.++ ++|..|+
T Consensus 88 it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~ 167 (480)
T PHA02790 88 IDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLS 167 (480)
T ss_pred EecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 7887765
No 6
>KOG4350|consensus
Probab=99.94 E-value=5.8e-27 Score=207.15 Aligned_cols=168 Identities=25% Similarity=0.423 Sum_probs=157.8
Q ss_pred hHHHHHHHhhhcCCCccEEEEecCeEEehhHHHHhccCHHHHHhccccccccCCCeEEEccCCHHHHHHHhHhhccCCCC
Q psy10761 176 RLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTGRST 255 (365)
Q Consensus 176 ~l~~~l~~l~~~~~~~Dv~i~~~~~~~~~hk~iL~~~S~~F~~l~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY~~~~~ 255 (365)
.+.+++..++-+++++||+|++++++|+|||.|||+||.||++|+.|+|+|+.+..|.|++...++|+.+|+|||+|.+.
T Consensus 30 ~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~ 109 (620)
T KOG4350|consen 30 NFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKID 109 (620)
T ss_pred chhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhccee
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C---cHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCcHHHHHHHHHHHHHcHHHHHCCccHHHH
Q psy10761 256 S---LDKMADDLLAAADKYALERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINTHATEVMDTVGWKQM 332 (365)
Q Consensus 256 ~---~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~~~~l 332 (365)
. ..+.+.+.|.+|++|+++.|.....++|.+.+..+|++.++..|..|++++|.+.|+.|+.+|..+++..+.|..|
T Consensus 110 l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~L 189 (620)
T KOG4350|consen 110 LAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRL 189 (620)
T ss_pred cccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhh
Confidence 4 4578899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhChHHHHHHHHH
Q psy10761 333 ILSHPHLIAEAFRA 346 (365)
Q Consensus 333 ~~~~~~~~~~l~~~ 346 (365)
++ +.+.+++.+
T Consensus 190 Sk---~sL~e~l~R 200 (620)
T KOG4350|consen 190 SK---DSLKELLAR 200 (620)
T ss_pred hH---HHHHHHHhh
Confidence 97 556666543
No 7
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.88 E-value=3.6e-22 Score=159.69 Aligned_cols=130 Identities=21% Similarity=0.292 Sum_probs=101.1
Q ss_pred EEEEEEEcccccccc--cCC--CeeeccccccCCCCCccEEEEEecCCCCCCCCCeEEEEEEeecCC-----CceEEEEE
Q psy10761 23 FSYMWTINNFSFCRE--EMG--EVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCN-----KTEVRAKF 93 (365)
Q Consensus 23 ~~~~w~I~nfs~~~~--~~~--~~~~S~~F~~~g~~~~~W~l~l~p~g~~~~~~~~lsl~L~~~~~~-----~~~~~~~~ 93 (365)
+++.|+|+||++..+ ..| ..+.||+|+.+.+ |++|+|.+||||.+.+.++|||+||++.... .|++.+++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~-Gy~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~ 79 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKY-GYKVCLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFRHKV 79 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCC-CceEEEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceEEEE
Confidence 578999999998764 223 3799999998854 4799999999999877889999999999865 78999999
Q ss_pred EEEEEeccCCccccccc-cc--eeeec-----cCCCcccceeeecccccccccCCCCCCeEEEEEEeE
Q psy10761 94 KFSILNAKREETKAMES-QR--AYRFV-----QGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEVS 153 (365)
Q Consensus 94 ~~~l~~~~~~~~~~~~~-~~--~~~f~-----~~~~~G~~~fi~~~~l~~~~~~~l~dd~l~i~~~v~ 153 (365)
+|+|+||++........ .. ...|. .+..||+..|+++++|.....+|+.||+++|+|+|.
T Consensus 80 tfsLlDq~~~~~~~~~~~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~ 147 (147)
T cd03779 80 TFMLLDQNNREHVIDAFRPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD 147 (147)
T ss_pred EEEEECCCCCCCCcEeecCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence 99999998644321111 11 13454 234699999999999932124999999999999873
No 8
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.87 E-value=8.9e-22 Score=158.22 Aligned_cols=127 Identities=20% Similarity=0.355 Sum_probs=102.9
Q ss_pred EEEEEEEEcccccccccCCCeeeccccccCCCCCccEEEEEecCCCCC--CCCCeEEEEEEeecC---CCceEEEEEEEE
Q psy10761 22 KFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDE--ESKDYLSLYLLLVSC---NKTEVRAKFKFS 96 (365)
Q Consensus 22 ~~~~~w~I~nfs~~~~~~~~~~~S~~F~~~g~~~~~W~l~l~p~g~~~--~~~~~lsl~L~~~~~---~~~~~~~~~~~~ 96 (365)
.++++|+|+|||.+ ++.+.|+.|.+||+ +|+|.+||+|... +..+++|+||.|... +.|++.|+++|+
T Consensus 2 ~~~~~~~I~~~S~l----~e~~~S~~f~vgG~---~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~~~~w~i~a~~~~~ 74 (137)
T cd03772 2 EATFSFTVERFSRL----SESVLSPPCFVRNL---PWKIMVMPRNYPDRNPHQKSVGFFLQCNAESDSTSWSCHAQAVLR 74 (137)
T ss_pred CcEEEEEECCcccC----CCcEECCCEEECCc---ceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCCCCCCeEEEEEEEE
Confidence 46899999999996 46899999999996 8999999999654 235899999999764 357899999999
Q ss_pred EEeccCCccccccccceeeec-cCCCcccceeeecccccccccCCCCCCeEEEEEEeEeee
Q psy10761 97 ILNAKREETKAMESQRAYRFV-QGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEVSVVA 156 (365)
Q Consensus 97 l~~~~~~~~~~~~~~~~~~f~-~~~~~G~~~fi~~~~l~~~~~~~l~dd~l~i~~~v~v~~ 156 (365)
|+|+++.... ......+.|. ....|||.+|++|++|.++.+||+.||+++|+|+|.+-.
T Consensus 75 l~~~~~~~~~-~~~~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 75 IINYKDDEPS-FSRRISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred EEcCCCCccc-EEEeeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 9999853221 1212223563 456899999999999987789999999999999998753
No 9
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.87 E-value=1e-21 Score=163.56 Aligned_cols=132 Identities=19% Similarity=0.312 Sum_probs=104.9
Q ss_pred EEEEEEEEEEEEEcccccccc--cCCC--eeeccccccC--CCCCccEEEEEecCCCCCCCCCeEEEEEEeecCC-----
Q psy10761 17 QVKVVKFSYMWTINNFSFCRE--EMGE--VLKSSTFSAG--ANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCN----- 85 (365)
Q Consensus 17 ~~~~~~~~~~w~I~nfs~~~~--~~~~--~~~S~~F~~~--g~~~~~W~l~l~p~g~~~~~~~~lsl~L~~~~~~----- 85 (365)
+....+++|.|+|.||+..++ +.|. ++.|++|++| || +|+|.+||||.+.+.++|+|+||++..+.
T Consensus 33 ~~~~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY---~w~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L 109 (186)
T cd03777 33 ETASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGY---KMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALL 109 (186)
T ss_pred hccccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCe---eEEEEEEcCCCCCCCCCEEEEEEEEecCCccccc
Confidence 345567999999999999864 4455 8999999999 65 99999999998877889999999999875
Q ss_pred CceEEEEEEEEEEeccCCcccccc---cc-ceeeecc-----CCCcccceeeecccccccccCCCCCCeEEEEEEeE
Q psy10761 86 KTEVRAKFKFSILNAKREETKAME---SQ-RAYRFVQ-----GKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEVS 153 (365)
Q Consensus 86 ~~~~~~~~~~~l~~~~~~~~~~~~---~~-~~~~f~~-----~~~~G~~~fi~~~~l~~~~~~~l~dd~l~i~~~v~ 153 (365)
.|++.++++|+|+||++....... .. ....|.+ +..||++.|++++.| +.++|+.||+++|+|.|.
T Consensus 110 ~WP~~~~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~L--e~~~ylkdD~l~Irv~v~ 184 (186)
T cd03777 110 PWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVL--ENGTYIKDDTIFIKVIVD 184 (186)
T ss_pred CCceeEEEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHh--ccCCcEeCCEEEEEEEEe
Confidence 899999999999999762111000 00 0123431 346999999999999 578999999999999876
No 10
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.87 E-value=1e-21 Score=157.10 Aligned_cols=123 Identities=26% Similarity=0.460 Sum_probs=100.6
Q ss_pred EEEEEEEcccccccccCCCeeeccccccCCCCCccEEEEEecCCCCCCCCCeEEEEEEeecCCCceEEEEEEEEEEecc-
Q psy10761 23 FSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNKTEVRAKFKFSILNAK- 101 (365)
Q Consensus 23 ~~~~w~I~nfs~~~~~~~~~~~S~~F~~~g~~~~~W~l~l~p~g~~~~~~~~lsl~L~~~~~~~~~~~~~~~~~l~~~~- 101 (365)
.+++|+|+|||.+.+ .|+++.|++|.+||+ +|+|.+||+|..++.++++|+||.+..+..+.+.++++|+|+|+.
T Consensus 5 ~~~~~~I~~fS~~~~-~~~~~~S~~F~vgG~---~W~i~~yP~G~~~~~~~~lSl~L~l~~~~~~~~~~~~~l~llnq~~ 80 (132)
T cd03773 5 DSATFTLENFSTLRQ-SADPVYSDPLNVDGL---CWRLKVYPDGNGEVRGNFLSVFLELCSGLGEASKYEYRVEMVHQAN 80 (132)
T ss_pred cccEEEECChhhhhc-CCcceeCCCeEeCCc---cEEEEEECCCCCCCCCCEEEEEEEeecCCCCceeEEEEEEEEcCCC
Confidence 578999999999863 578999999999986 899999999987667899999999877545678889999999994
Q ss_pred CCccccccccceeeeccCCCcccceeeecccccccccCCCCC--CeEEEEEEeE
Q psy10761 102 REETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPE--DKLTIFCEVS 153 (365)
Q Consensus 102 ~~~~~~~~~~~~~~f~~~~~~G~~~fi~~~~l~~~~~~~l~d--d~l~i~~~v~ 153 (365)
+... ........|..+.+|||.+|+++++|. ++|||.| |+++|+|.|.
T Consensus 81 ~~~~--~~~~~~~~f~~~~~wG~~~Fi~~~~L~--~~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 81 PTKN--IKREFASDFEVGECWGYNRFFRLDLLI--NEGYLLPENDTLILRFSVR 130 (132)
T ss_pred Cccc--eEEeccccccCCCCcCHHHhccHHHHh--hCCCcCCCCCEEEEEEEEe
Confidence 3322 222223456666789999999999984 5899999 9999999874
No 11
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.87 E-value=1.4e-21 Score=157.24 Aligned_cols=127 Identities=19% Similarity=0.340 Sum_probs=101.4
Q ss_pred EEEEEEEcccccccc--cCCC--eeecccc--ccCCCCCccEEEEEecCCCCCCCCCeEEEEEEeecC-----CCceEEE
Q psy10761 23 FSYMWTINNFSFCRE--EMGE--VLKSSTF--SAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC-----NKTEVRA 91 (365)
Q Consensus 23 ~~~~w~I~nfs~~~~--~~~~--~~~S~~F--~~~g~~~~~W~l~l~p~g~~~~~~~~lsl~L~~~~~-----~~~~~~~ 91 (365)
+++.|+|.||+++++ +.|. ++.|++| .++|| +|+|++||||.+++.++|||+||++..+ -.|++.+
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy---~w~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~~ 77 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGY---RLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQ 77 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCe---eEEEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceEE
Confidence 478999999999864 5666 8999999 78885 9999999999987788999999999876 5789999
Q ss_pred EEEEEEEeccCCcccccc--cc--ceeeecc-----CCCcccceeeecccccccccCCCCCCeEEEEEEe
Q psy10761 92 KFKFSILNAKREETKAME--SQ--RAYRFVQ-----GKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEV 152 (365)
Q Consensus 92 ~~~~~l~~~~~~~~~~~~--~~--~~~~f~~-----~~~~G~~~fi~~~~l~~~~~~~l~dd~l~i~~~v 152 (365)
+++|+|+||++....... .. ....|.+ +..||+..|+++++|.....+|+.||+++|+|.|
T Consensus 78 ~~tfsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v 147 (148)
T cd03780 78 RVTLMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV 147 (148)
T ss_pred EEEEEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence 999999999865432111 11 1233543 3469999999999994323599999999999976
No 12
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.86 E-value=1.9e-21 Score=158.83 Aligned_cols=128 Identities=22% Similarity=0.343 Sum_probs=98.9
Q ss_pred EEEEEEEcccccccc----cCCCeeeccccccCCCCCccEEEEEecCCCCCCCCCeEEEEEEeecC-----CCceEEEEE
Q psy10761 23 FSYMWTINNFSFCRE----EMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC-----NKTEVRAKF 93 (365)
Q Consensus 23 ~~~~w~I~nfs~~~~----~~~~~~~S~~F~~~g~~~~~W~l~l~p~g~~~~~~~~lsl~L~~~~~-----~~~~~~~~~ 93 (365)
++|+|+|+||+.+++ ..++++.|++|.+|++ |++|+|.+||+|.++..++|+|+||++.++ ..|++.+++
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~-G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~ 79 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRY-GYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKI 79 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCC-CceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceE
Confidence 579999999999864 3467999999999922 249999999999876667899999998765 257899999
Q ss_pred EEEEEeccCC---cccccc---ccceeeec------cCCCcccceeeecccccccccCCCCCCeEEEEEEeE
Q psy10761 94 KFSILNAKRE---ETKAME---SQRAYRFV------QGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEVS 153 (365)
Q Consensus 94 ~~~l~~~~~~---~~~~~~---~~~~~~f~------~~~~~G~~~fi~~~~l~~~~~~~l~dd~l~i~~~v~ 153 (365)
+|+|+|+.+. +..... ......|. +..+|||.+|+++++|. ++||+.||.++|+|+|.
T Consensus 80 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~--~~gfl~dD~l~I~~~v~ 149 (149)
T cd00270 80 TLTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLE--SRGYVKDDTLFIKVEVD 149 (149)
T ss_pred EEEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhc--cCCCEeCCEEEEEEEEC
Confidence 9999999874 111000 00012232 35679999999999994 46999999999999873
No 13
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.86 E-value=2.2e-21 Score=157.77 Aligned_cols=126 Identities=25% Similarity=0.426 Sum_probs=98.3
Q ss_pred EEEEEEEcccccccc--cCCCe--eecccccc--CCCCCccEEEEEecCCCCCCCCCeEEEEEEeecCC-----CceEEE
Q psy10761 23 FSYMWTINNFSFCRE--EMGEV--LKSSTFSA--GANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCN-----KTEVRA 91 (365)
Q Consensus 23 ~~~~w~I~nfs~~~~--~~~~~--~~S~~F~~--~g~~~~~W~l~l~p~g~~~~~~~~lsl~L~~~~~~-----~~~~~~ 91 (365)
++|.|+|+||+.+++ ..|+. +.|++|.+ ||| +|+|++||+|..++..+|+|+||++..++ .|++.+
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy---~W~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~wpv~a 77 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGY---KLCARLNLSLPEARCPNYISLFVHLMQGENDSHLDWPFQG 77 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCc---eEEEEEEeCCCCCCCCCEEEEEEEEeccCCCcccCCcccc
Confidence 579999999998654 45664 88999986 565 99999999998877789999999998653 478999
Q ss_pred EEEEEEEeccCCcccc---cc-ccceeeec------cCCCcccceeeecccccccccCCCCCCeEEEEEEeE
Q psy10761 92 KFKFSILNAKREETKA---ME-SQRAYRFV------QGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEVS 153 (365)
Q Consensus 92 ~~~~~l~~~~~~~~~~---~~-~~~~~~f~------~~~~~G~~~fi~~~~l~~~~~~~l~dd~l~i~~~v~ 153 (365)
+++|+|+||++..... .. ......|. ++..|||..|+++++| +.++|+.||+++|+|+|.
T Consensus 78 ~~~~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~L--e~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 78 TITLTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDL--LQRGFVKNDTLLIKIEVN 147 (147)
T ss_pred eeEEEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHh--hhCCCccCCEEEEEEEEC
Confidence 9999999998643211 00 11112343 2457999999999999 557999999999999873
No 14
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.85 E-value=4.9e-21 Score=156.45 Aligned_cols=128 Identities=17% Similarity=0.256 Sum_probs=100.0
Q ss_pred EEEEEEEcccccccc---c-CCCeeeccccccCCCCCccEEEEEecCCCCCCCCCeEEEEEEeecC-----CCceEEEEE
Q psy10761 23 FSYMWTINNFSFCRE---E-MGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC-----NKTEVRAKF 93 (365)
Q Consensus 23 ~~~~w~I~nfs~~~~---~-~~~~~~S~~F~~~g~~~~~W~l~l~p~g~~~~~~~~lsl~L~~~~~-----~~~~~~~~~ 93 (365)
++|.|+|.||+.++. . .|.++.|++|.+|++ |+.|+|++||||..++.++|+|+||++... ..|++.+++
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~-Gy~w~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~ 79 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRY-GYKLQVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLEWPFSHRI 79 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCC-CEEEEEEEECCCCCCCCCCEEEEEEEEecCCcccccCCceeeEE
Confidence 579999999999864 2 468999999999933 259999999999887788999999999874 267899999
Q ss_pred EEEEEeccCC--cc-ccc-cc----cceeeec---------cCCCcccceeeecccccccccCCCCCCeEEEEEEeE
Q psy10761 94 KFSILNAKRE--ET-KAM-ES----QRAYRFV---------QGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEVS 153 (365)
Q Consensus 94 ~~~l~~~~~~--~~-~~~-~~----~~~~~f~---------~~~~~G~~~fi~~~~l~~~~~~~l~dd~l~i~~~v~ 153 (365)
+|+|+||.+. .. ... .. .....|. ++..|||..|+++++| +.++|+.||+++|+|+|+
T Consensus 80 ~~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~L--e~~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 80 TFTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDL--KKRNYIKDDAIFLRASVE 154 (154)
T ss_pred EEEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHH--hhCCcccCCEEEEEEEeC
Confidence 9999999864 11 011 00 0012233 2346999999999999 568999999999999874
No 15
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.84 E-value=2e-20 Score=149.65 Aligned_cols=119 Identities=28% Similarity=0.448 Sum_probs=95.8
Q ss_pred EEEEEEcccccccccCCCeeeccccccCCCCCccEEEEEecCCCCCCCCCeEEEEEEeecC--------CCceEEEEEEE
Q psy10761 24 SYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC--------NKTEVRAKFKF 95 (365)
Q Consensus 24 ~~~w~I~nfs~~~~~~~~~~~S~~F~~~g~~~~~W~l~l~p~g~~~~~~~~lsl~L~~~~~--------~~~~~~~~~~~ 95 (365)
+++|+|+|||.+ ++.+.|++|.+||+ +|+|.+||+|... .+++|+||.+.+. +.|.+.|+|+|
T Consensus 2 ~f~w~I~~fS~~----~~~~~S~~F~vGG~---~W~l~~yP~G~~~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~ 72 (134)
T cd03775 2 SFTWRIKNWSEL----EKKVHSPKFKCGGF---EWRILLFPQGNSQ--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFAL 72 (134)
T ss_pred cEEEEECCcccC----CcceeCCCEEECCe---eEEEEEeCCCCCC--CCeEEEEEEecCcccccccCCCCCeEEEEEEE
Confidence 689999999995 46899999999997 8999999999654 7899999998642 35679999999
Q ss_pred EEEeccCCccccccccceeeecc-CCCcccceeeeccccccc----ccCCCCCCeEEEEEEe
Q psy10761 96 SILNAKREETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDE----LNGLLPEDKLTIFCEV 152 (365)
Q Consensus 96 ~l~~~~~~~~~~~~~~~~~~f~~-~~~~G~~~fi~~~~l~~~----~~~~l~dd~l~i~~~v 152 (365)
+|+|+.+... .......+.|.. ..+|||.+|+++++|.++ ++||+.||+++|++.|
T Consensus 73 ~l~n~~~~~~-~~~~~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~ 133 (134)
T cd03775 73 VISNPGDPSI-QLSNVAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYV 133 (134)
T ss_pred EEEcCCCCcc-ceEccceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEE
Confidence 9999964331 122223456653 478999999999999743 5899999999999876
No 16
>KOG2075|consensus
Probab=99.84 E-value=5.6e-20 Score=166.79 Aligned_cols=177 Identities=25% Similarity=0.352 Sum_probs=158.9
Q ss_pred cccccCchhHHHHHHHhhhcCCCccEEEEecC-----eEEehhHHHHhccCHHHHHhccccccccCCCeEEEccCCHHHH
Q psy10761 168 AQFKVPDCRLADNLGALFEIQKFSDVTLYSAG-----QEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVL 242 (365)
Q Consensus 168 ~~~~~p~~~l~~~l~~l~~~~~~~Dv~i~~~~-----~~~~~hk~iL~~~S~~F~~l~~~~~~e~~~~~i~l~~~~~~~f 242 (365)
+.++.+.+++......+++++..+|+.|++++ +.++|||.+|+..|.+|.+||.+++.+....+|.++|+++.+|
T Consensus 92 ~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaF 171 (521)
T KOG2075|consen 92 PNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAF 171 (521)
T ss_pred cccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHh
Confidence 34567777888899999999999999999974 6899999999999999999999999999899999999999999
Q ss_pred HHHhHhhccCCCCCcHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCChHHHHHHHHH-HHHcCcHHHHHHHHHHHHHcHH
Q psy10761 243 REMLRFIYTGRSTSLDKMADDLLAAADKYALERLKVMCEEALCTNLSIENAAEILIL-ADLHSADQLKTQAIEFINTHAT 321 (365)
Q Consensus 243 ~~~L~~iY~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~~~l~~-a~~~~~~~L~~~~~~~i~~~~~ 321 (365)
..+|+|||++.+.+..+++..++.+|++|.++.|.+.|.++|...+...+.+..+-. |..++-++|...|++-|..+++
T Consensus 172 l~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~ 251 (521)
T KOG2075|consen 172 LAFLRFLYSDEVKLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFE 251 (521)
T ss_pred HHHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHH
Confidence 999999999999999999999999999999999999999999988777776665555 9999999999999999999999
Q ss_pred HHHCCccHHHHHhhChHHHHHHHH
Q psy10761 322 EVMDTVGWKQMILSHPHLIAEAFR 345 (365)
Q Consensus 322 ~v~~~~~~~~l~~~~~~~~~~l~~ 345 (365)
..+..++|.+.... -..+.++++
T Consensus 252 ~al~~EGf~did~~-~dt~~evl~ 274 (521)
T KOG2075|consen 252 DALTPEGFCDIDST-RDTYEEVLR 274 (521)
T ss_pred hhhCccceeehhhH-HHHHHHHHh
Confidence 99999999888643 344555554
No 17
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.82 E-value=4.9e-20 Score=142.83 Aligned_cols=107 Identities=36% Similarity=0.616 Sum_probs=96.0
Q ss_pred HHHhhhcCCCccEEEEec-CeEEehhHHHHhccCHHHHHhcccc-ccccCCCeEEEccCCHHHHHHHhHhhccCCCCCc-
Q psy10761 181 LGALFEIQKFSDVTLYSA-GQEFRAHKAILAAQSPVFMAMFEHE-MEERKHNRVDIADVDADVLREMLRFIYTGRSTSL- 257 (365)
Q Consensus 181 l~~l~~~~~~~Dv~i~~~-~~~~~~hk~iL~~~S~~F~~l~~~~-~~e~~~~~i~l~~~~~~~f~~~L~~iY~~~~~~~- 257 (365)
|+++++++.++|++|.++ +.+|+|||.+|+++|+||+.||.++ +.+.....|.++++++++|+.+|+|+|++.+.+.
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~ 80 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINS 80 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCH
Confidence 467888999999999999 8999999999999999999999987 5666666899999999999999999999999888
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHhc
Q psy10761 258 DKMADDLLAAADKYALERLKVMCEEALCTN 287 (365)
Q Consensus 258 ~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 287 (365)
.+++.+++.+|++|+++.|+..|+++|.+.
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 999999999999999999999999999763
No 18
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.81 E-value=1.5e-19 Score=146.03 Aligned_cols=135 Identities=18% Similarity=0.221 Sum_probs=104.6
Q ss_pred EEEEEEEEEEEEEEcccccccc--cC--CCeeeccccccCCCCCccEEEEEecCCCCCCCCCeEEEEEEeecC-----CC
Q psy10761 16 LQVKVVKFSYMWTINNFSFCRE--EM--GEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC-----NK 86 (365)
Q Consensus 16 ~~~~~~~~~~~w~I~nfs~~~~--~~--~~~~~S~~F~~~g~~~~~W~l~l~p~g~~~~~~~~lsl~L~~~~~-----~~ 86 (365)
.++....++++|+|.||+++.+ .. ...+.||+|+.+.+ ||+|+|++||||.+.+.+.|+|+|+++.++ -.
T Consensus 12 l~~~~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~-GYk~~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~ 90 (164)
T cd03778 12 XEASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRY-GYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLR 90 (164)
T ss_pred ccccccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCC-CeEEEEEEEeCCCCCCCCCEEEEEEEEecCCcCcccC
Confidence 3455667999999999999865 12 34899999998875 689999999999888788999999999876 37
Q ss_pred ceEEEEEEEEEEeccCCcccccccc---ceeeec-----cCCCcccceeeecccccccccCCCCCCeEEEEEEe
Q psy10761 87 TEVRAKFKFSILNAKREETKAMESQ---RAYRFV-----QGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEV 152 (365)
Q Consensus 87 ~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~f~-----~~~~~G~~~fi~~~~l~~~~~~~l~dd~l~i~~~v 152 (365)
|++..+++|+|+||++.++...... ....|. .+..|||..|++.++|.. .++|+.||++.|+|.|
T Consensus 91 WPf~~~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~-~~~Yv~dDtlfIk~~V 163 (164)
T cd03778 91 WPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEA-KNSYVRDDAIFIKAIV 163 (164)
T ss_pred CceeeEEEEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHccc-cCCcccCCeEEEEEEE
Confidence 8999999999999975432211110 000122 234699999999999963 3699999999999876
No 19
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.81 E-value=2.2e-19 Score=146.25 Aligned_cols=125 Identities=24% Similarity=0.418 Sum_probs=95.3
Q ss_pred EEEEEEEcccccccc--cCCCeeecccc-ccCCCCCccEEEEEecCCCCCCCCCeEEEEEEeecCC-----Cce-EEEEE
Q psy10761 23 FSYMWTINNFSFCRE--EMGEVLKSSTF-SAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCN-----KTE-VRAKF 93 (365)
Q Consensus 23 ~~~~w~I~nfs~~~~--~~~~~~~S~~F-~~~g~~~~~W~l~l~p~g~~~~~~~~lsl~L~~~~~~-----~~~-~~~~~ 93 (365)
.+|+|+|.|||++++ ..|..+.|++| .+||| +|+|++||||.++ .++|+|+||++..+. .|+ +.+++
T Consensus 2 p~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy---~w~I~~YPnG~~~-~~~~lSlyL~L~~g~~d~~L~WP~v~a~~ 77 (167)
T cd03771 2 PEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGY---AFQVGLYPNGTES-YPGYTGLYFHLCSGENDDVLEWPCPNRQA 77 (167)
T ss_pred CeEEEEEcCchhhhhcCCCCCEEECCCCCccCCe---EEEEEEEeCCCCC-CCCcceEEEEEecCCccccccCcceeEEE
Confidence 479999999999863 56789999999 77765 9999999999887 789999999998652 466 68999
Q ss_pred EEEEEeccCCccccccccc--------------eeeec------------------cCCCcccceeeecccccccccCCC
Q psy10761 94 KFSILNAKREETKAMESQR--------------AYRFV------------------QGKDWGFKKFIRRDFLLDELNGLL 141 (365)
Q Consensus 94 ~~~l~~~~~~~~~~~~~~~--------------~~~f~------------------~~~~~G~~~fi~~~~l~~~~~~~l 141 (365)
+|+|+||+.........+. .+.|. ++.+|||..|++.++| ...+|+
T Consensus 78 t~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L--~~r~yl 155 (167)
T cd03771 78 TMTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRL--RRRDFL 155 (167)
T ss_pred EEEEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHh--ccCCCC
Confidence 9999999741110000000 00111 2347999999999999 457799
Q ss_pred CCCeEEEEEEeE
Q psy10761 142 PEDKLTIFCEVS 153 (365)
Q Consensus 142 ~dd~l~i~~~v~ 153 (365)
.||++.|+++++
T Consensus 156 k~dtl~i~~~~~ 167 (167)
T cd03771 156 KGDDLIILLDFE 167 (167)
T ss_pred cCCEEEEEEEeC
Confidence 999999998763
No 20
>KOG4591|consensus
Probab=99.80 E-value=5.7e-19 Score=142.40 Aligned_cols=163 Identities=28% Similarity=0.371 Sum_probs=138.1
Q ss_pred hHHHHHHHhhhcCCCccEEEEec---CeEEehhHHHHhccCHHHHHhccccccccCCCeEEEccCCHHHHHHHhHhhccC
Q psy10761 176 RLADNLGALFEIQKFSDVTLYSA---GQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTG 252 (365)
Q Consensus 176 ~l~~~l~~l~~~~~~~Dv~i~~~---~~~~~~hk~iL~~~S~~F~~l~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY~~ 252 (365)
.+..-..++++.+.++|++|.++ ++.++|||.||++||.+.+-.-.| .....+..++|.++++|..+|+||||+
T Consensus 52 RLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~WkfaN~~---dekse~~~~dDad~Ea~~t~iRWIYTD 128 (280)
T KOG4591|consen 52 RLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKFANGG---DEKSEELDLDDADFEAFHTAIRWIYTD 128 (280)
T ss_pred HHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhhhccCC---CcchhhhcccccCHHHHHHhheeeecc
Confidence 44555578889999999999998 478999999999999987632211 223456788999999999999999999
Q ss_pred CCCC--cHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCcHHHHHHHHHHHHHcHHHHHCCccHH
Q psy10761 253 RSTS--LDKMADDLLAAADKYALERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINTHATEVMDTVGWK 330 (365)
Q Consensus 253 ~~~~--~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~~~ 330 (365)
++.. .++.+.++.++|++|+++-|++.|+..+...++.+||+.++++|+..++..|...|.+.|..++..+-+ .+|.
T Consensus 129 Eidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~~-a~Fa 207 (280)
T KOG4591|consen 129 EIDFKEDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLGK-ADFA 207 (280)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccCh-HHHH
Confidence 8864 567889999999999999999999999999999999999999999999999999999999999888764 4666
Q ss_pred HHHhhChHHHHHHHH
Q psy10761 331 QMILSHPHLIAEAFR 345 (365)
Q Consensus 331 ~l~~~~~~~~~~l~~ 345 (365)
+++ |.++..++.
T Consensus 208 qMs---~aLLYklId 219 (280)
T KOG4591|consen 208 QMS---AALLYKLID 219 (280)
T ss_pred hcc---HHHHHHHHc
Confidence 665 577766664
No 21
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.76 E-value=6.5e-18 Score=133.59 Aligned_cols=122 Identities=39% Similarity=0.569 Sum_probs=96.3
Q ss_pred EEEEEEEcccccccccCCCeeeccccccCCCCCccEEEEEecCCCCCCCCCeEEEEEEeecCC----CceEEEEEEEEEE
Q psy10761 23 FSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCN----KTEVRAKFKFSIL 98 (365)
Q Consensus 23 ~~~~w~I~nfs~~~~~~~~~~~S~~F~~~g~~~~~W~l~l~p~g~~~~~~~~lsl~L~~~~~~----~~~~~~~~~~~l~ 98 (365)
++|+|+|.+|+. ..++.+.|+.|..+|+ +|+|.+||+|... +.+++|+||.|.+.. .|++.++++|+|+
T Consensus 1 ~~~~~~i~~~~~---~~~~~~~S~~f~~~g~---~W~l~~~p~~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~ 73 (126)
T cd00121 1 GKHTWKIVNFSE---LEGESIYSPPFEVGGY---KWRIRIYPNGDGE-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLV 73 (126)
T ss_pred CEEEEEECCCCC---CCCcEEECCCEEEcCE---eEEEEEEcCCCCC-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEE
Confidence 379999999998 2467999999999985 9999999998655 578999999998764 5899999999999
Q ss_pred eccCCccccccccceeeeccCCCcccceeeecccccccccCCCCCCeEEEEEEeE
Q psy10761 99 NAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEVS 153 (365)
Q Consensus 99 ~~~~~~~~~~~~~~~~~f~~~~~~G~~~fi~~~~l~~~~~~~l~dd~l~i~~~v~ 153 (365)
++++.+.........+......+|||.+|++|++|.+ ..++.||+++|+|+|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~--~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 74 NQNGGKSLSKSFTHVFFSEKGSGWGFPKFISWDDLED--SYYLVDDSLTIEVEVK 126 (126)
T ss_pred CCCCCccceEeccCCcCCCCCCCCChHHeeEHHHhcc--CCcEECCEEEEEEEEC
Confidence 9984443323222211114567899999999999954 3348999999999873
No 22
>KOG4682|consensus
Probab=99.75 E-value=1e-17 Score=148.75 Aligned_cols=162 Identities=23% Similarity=0.262 Sum_probs=146.9
Q ss_pred HHHhhhcCCCccEEEEecCeEEehhHHHHhccCHHHHHhccccccccCCCeEEEc----cCCHHHHHHHhHhhccCCCCC
Q psy10761 181 LGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIA----DVDADVLREMLRFIYTGRSTS 256 (365)
Q Consensus 181 l~~l~~~~~~~Dv~i~~~~~~~~~hk~iL~~~S~~F~~l~~~~~~e~~~~~i~l~----~~~~~~f~~~L~~iY~~~~~~ 256 (365)
.+.++.+++.+||++.+-|.+.+.||..|. +|+||.+||.|-+.|+..+.|.++ .++..+|..++.=+|.+++.+
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI 138 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEI 138 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheec
Confidence 467888999999999999999999999998 999999999999999999988874 688999999999999999999
Q ss_pred cHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCcHHHHHHHHHHHHHcHHHHHCCccHHHHHhhC
Q psy10761 257 LDKMADDLLAAADKYALERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINTHATEVMDTVGWKQMILSH 336 (365)
Q Consensus 257 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~~~~l~~~~ 336 (365)
..+.+..++++|..+++++|.+.|.+.+++.+++++++..++.|.+|+...+++.|++++..|+-.+....-+.+++
T Consensus 139 ~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~--- 215 (488)
T KOG4682|consen 139 KLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEIS--- 215 (488)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcC---
Confidence 99999999999999999999999999999999999999999999999999999999999999988888766444443
Q ss_pred hHHHHHHHHHHhhc
Q psy10761 337 PHLIAEAFRALATQ 350 (365)
Q Consensus 337 ~~~~~~l~~~~~~~ 350 (365)
.+|+..++.+
T Consensus 216 ----~~Lm~~ll~S 225 (488)
T KOG4682|consen 216 ----INLMKQLLGS 225 (488)
T ss_pred ----HHHHHHHhCC
Confidence 5555555554
No 23
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.73 E-value=2.3e-17 Score=129.37 Aligned_cols=114 Identities=35% Similarity=0.505 Sum_probs=93.0
Q ss_pred EcccccccccCCCeeeccccccCCCCCccEEEEEecCCCCCCCCCeEEEEEEeecC-----CCceEEEEEEEEEEeccCC
Q psy10761 29 INNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC-----NKTEVRAKFKFSILNAKRE 103 (365)
Q Consensus 29 I~nfs~~~~~~~~~~~S~~F~~~g~~~~~W~l~l~p~g~~~~~~~~lsl~L~~~~~-----~~~~~~~~~~~~l~~~~~~ 103 (365)
|.|||++. ..+.+..|+.|..+|+ +|+|.+||+|. ++++++||.|..+ ..|++.+++++.++++.+.
T Consensus 1 i~nfs~l~-~~~~~~~s~~~~~~g~---~W~l~~~~~~~----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 72 (119)
T PF00917_consen 1 IKNFSKLK-EGEEYSSSFVFSHGGY---PWRLKVYPKGN----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGK 72 (119)
T ss_dssp ETTGGGHH-TSEEEEEEEESSTTSE---EEEEEEETTES----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSC
T ss_pred CcccceEe-CCCcEECCCeEEECCE---EEEEEEEeCCC----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCC
Confidence 78999987 3445566689988885 99999999984 7899999999976 3799999999999999887
Q ss_pred ccccccccceeeeccCCCcccceeeecccccccccCCCCCCeEEEEEEeEe
Q psy10761 104 ETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEVSV 154 (365)
Q Consensus 104 ~~~~~~~~~~~~f~~~~~~G~~~fi~~~~l~~~~~~~l~dd~l~i~~~v~v 154 (365)
....... ...|....+|||.+|++|++|.++ .|+.||+++|+|+|.|
T Consensus 73 ~~~~~~~--~~~F~~~~~~g~~~fi~~~~l~~~--~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 73 SISKRIK--SHSFNNPSSWGWSSFISWEDLEDP--YFLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEEEEEE--CEEECTTSEEEEEEEEEHHHHTTC--TTSBTTEEEEEEEEEE
T ss_pred cceeeee--eeEEeeecccchhheeEHHHhCcc--CCeECCEEEEEEEEEC
Confidence 6322212 467888889999999999999643 3899999999999976
No 24
>KOG0783|consensus
Probab=99.72 E-value=1.7e-17 Score=158.81 Aligned_cols=162 Identities=20% Similarity=0.365 Sum_probs=136.7
Q ss_pred CCCccEEEEe-cCeEEehhHHHHhccCHHHHHhccccccccCCCeEEEccCCHHHHHHHhHhhccC-CCC-----CcHHH
Q psy10761 188 QKFSDVTLYS-AGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTG-RST-----SLDKM 260 (365)
Q Consensus 188 ~~~~Dv~i~~-~~~~~~~hk~iL~~~S~~F~~l~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY~~-~~~-----~~~~~ 260 (365)
++.-|+.|.+ +|+.++|||++|++|++||..||..-|.|+..-.+.+..+..+.+..+|+|+|+. +.. -..+.
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF 787 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDF 787 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhh
Confidence 3445777766 7778999999999999999999999999988877777777799999999999954 322 13467
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCcHHHHHHHHHHHHHcHHHHHCCccHHHHHhhChHHH
Q psy10761 261 ADDLLAAADKYALERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINTHATEVMDTVGWKQMILSHPHLI 340 (365)
Q Consensus 261 ~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~~~~l~~~~~~~~ 340 (365)
+.+++.+||.|-+.+|+..||..|.+.++..++..++++|..|++..|+..|++||+.|+..++......++....-.-+
T Consensus 788 ~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi~~~dg~~LK~l 867 (1267)
T KOG0783|consen 788 MFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSISEWDGFHLKKL 867 (1267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccHhhhcchHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999998777666665444445
Q ss_pred HHHHHHHhh
Q psy10761 341 AEAFRALAT 349 (365)
Q Consensus 341 ~~l~~~~~~ 349 (365)
.+..+++++
T Consensus 868 ~~~yrkm~~ 876 (1267)
T KOG0783|consen 868 AQRYRKMLS 876 (1267)
T ss_pred HHHHHHHhh
Confidence 555666665
No 25
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.71 E-value=5.9e-17 Score=119.94 Aligned_cols=90 Identities=39% Similarity=0.672 Sum_probs=85.4
Q ss_pred cEEEEecCeEEehhHHHHhccCHHHHHhccccccccCCCeEEEccCCHHHHHHHhHhhccCCCCCcHHHHHHHHHHHHhc
Q psy10761 192 DVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTGRSTSLDKMADDLLAAADKY 271 (365)
Q Consensus 192 Dv~i~~~~~~~~~hk~iL~~~S~~F~~l~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~~~ll~~A~~~ 271 (365)
|+++.++|+.|+|||.+|+++|+||++||.+++.+.....+.+++.++.+|+.+|+|+|++.+.+...++.+++.+|++|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~ 80 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYL 80 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999988887788999999999999999999999999998888999999999999
Q ss_pred ChHHHHHHHH
Q psy10761 272 ALERLKVMCE 281 (365)
Q Consensus 272 ~~~~l~~~c~ 281 (365)
+++.|.+.|+
T Consensus 81 ~~~~l~~~c~ 90 (90)
T smart00225 81 QIPGLVELCE 90 (90)
T ss_pred CcHHHHhhhC
Confidence 9999999884
No 26
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.63 E-value=2.6e-15 Score=119.98 Aligned_cols=125 Identities=17% Similarity=0.275 Sum_probs=96.3
Q ss_pred EEEEEEEcccccccc--cCCCeeeccccccCCCCCccEEEEEecCCCCCCCCCeEEEEEEeecCC-----CceEE-EEEE
Q psy10761 23 FSYMWTINNFSFCRE--EMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCN-----KTEVR-AKFK 94 (365)
Q Consensus 23 ~~~~w~I~nfs~~~~--~~~~~~~S~~F~~~g~~~~~W~l~l~p~g~~~~~~~~lsl~L~~~~~~-----~~~~~-~~~~ 94 (365)
..+.|+|.||+++++ ..+..+.||+|+.+ + ||+.++++||||.+.+ ++|+|+|+++.++. .|++. -+++
T Consensus 2 p~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~-~-GYkl~l~~ylnG~g~~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit 78 (167)
T cd03782 2 PEHIWHIRNFTQLLATTPPNGKIYSPPFLSS-T-GYSFQVGLYLNGTDDY-PGNLAIYLHLTSGPNDDQLQWPCPWQQAT 78 (167)
T ss_pred CcEEEEeCcHHHHHHhcCCCceEECCCCcCc-c-CceeEEEEEecCCCCC-CCEEEEEEEEeccCCCccccCCCcCCeEE
Confidence 358999999999876 35678999999986 3 7999999999998765 78999999999863 68888 8999
Q ss_pred EEEEeccC---Ccccccc--cc------c---eeeec------------------cCCCcccceeeecccccccccCCCC
Q psy10761 95 FSILNAKR---EETKAME--SQ------R---AYRFV------------------QGKDWGFKKFIRRDFLLDELNGLLP 142 (365)
Q Consensus 95 ~~l~~~~~---~~~~~~~--~~------~---~~~f~------------------~~~~~G~~~fi~~~~l~~~~~~~l~ 142 (365)
|+|+||++ .+..... .. . .+.+. ++.++||+.|++.+.| ..+.|+.
T Consensus 79 ~~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L--~~r~yik 156 (167)
T cd03782 79 MMLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRL--RSRDFIK 156 (167)
T ss_pred EEEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHH--hhcCccc
Confidence 99999974 2111111 00 0 11111 1467999999999999 5699999
Q ss_pred CCeEEEEEEe
Q psy10761 143 EDKLTIFCEV 152 (365)
Q Consensus 143 dd~l~i~~~v 152 (365)
||.+.|-.++
T Consensus 157 dD~ifi~~~~ 166 (167)
T cd03782 157 GDDVIFLLTM 166 (167)
T ss_pred CCeEEEEEec
Confidence 9999887765
No 27
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.62 E-value=3.6e-15 Score=119.98 Aligned_cols=127 Identities=24% Similarity=0.433 Sum_probs=95.4
Q ss_pred EEEEEEEcccccccc--cCCCeeeccccccCCCCCccEEEEEecCCCCC-CCCCeEEEEEEeecCC-----CceE-EEEE
Q psy10761 23 FSYMWTINNFSFCRE--EMGEVLKSSTFSAGANDKLKWCLRVNPKGLDE-ESKDYLSLYLLLVSCN-----KTEV-RAKF 93 (365)
Q Consensus 23 ~~~~w~I~nfs~~~~--~~~~~~~S~~F~~~g~~~~~W~l~l~p~g~~~-~~~~~lsl~L~~~~~~-----~~~~-~~~~ 93 (365)
..++|+|.||+++++ ..+..+.||+|+.+ + ||+.+|++||||.+. +.++|+|||+++.++. .|++ .-++
T Consensus 2 p~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~-~-GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~i 79 (167)
T cd03783 2 PNAVWRVRNFSQILENTTKGDVLQSPRFYSP-E-GYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQA 79 (167)
T ss_pred CceeEEECcHHHHHHhCcCCCeEECCCCccC-C-CceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEE
Confidence 358999999999875 35779999999985 2 479999999999764 5688999999999863 6885 5699
Q ss_pred EEEEEeccCC---cccc---c------c-cc--ceeeec---------------cCCCcccceeeecccccccccCCCCC
Q psy10761 94 KFSILNAKRE---ETKA---M------E-SQ--RAYRFV---------------QGKDWGFKKFIRRDFLLDELNGLLPE 143 (365)
Q Consensus 94 ~~~l~~~~~~---~~~~---~------~-~~--~~~~f~---------------~~~~~G~~~fi~~~~l~~~~~~~l~d 143 (365)
+|+|+||++. +... . . .. ....|. ++.++||+.|++.+.| ...+|+.|
T Consensus 80 tl~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L--~~r~yikd 157 (167)
T cd03783 80 IITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQL--RRRSFLKN 157 (167)
T ss_pred EEEEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHH--hhCCcccC
Confidence 9999999741 1100 0 0 00 001122 3457999999999999 56999999
Q ss_pred CeEEEEEEeE
Q psy10761 144 DKLTIFCEVS 153 (365)
Q Consensus 144 d~l~i~~~v~ 153 (365)
|.+.|.++++
T Consensus 158 DtlfI~~~~~ 167 (167)
T cd03783 158 DDLIIFVDFE 167 (167)
T ss_pred CeEEEEEecC
Confidence 9999988763
No 28
>smart00061 MATH meprin and TRAF homology.
Probab=99.48 E-value=2.8e-13 Score=101.51 Aligned_cols=90 Identities=27% Similarity=0.399 Sum_probs=73.7
Q ss_pred EEEEEcccccccccCCCeeeccccccCCCCCccEEEEEecCCCCCCCCCeEEEEEEeecCC----CceEEEEEEEEEEec
Q psy10761 25 YMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCN----KTEVRAKFKFSILNA 100 (365)
Q Consensus 25 ~~w~I~nfs~~~~~~~~~~~S~~F~~~g~~~~~W~l~l~p~g~~~~~~~~lsl~L~~~~~~----~~~~~~~~~~~l~~~ 100 (365)
++|+|+||+.+. .|+.+.|++|.++|+ +|+|.+||+ ++++|+||.|.... .|++.|+++++|+|+
T Consensus 2 ~~~~~~~~~~~~--~~~~~~S~~f~~~g~---~W~i~~~p~------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~ 70 (95)
T smart00061 2 LSHTFKNVSRLE--EGESYFSPSEEHFNI---PWRLKIYRK------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQ 70 (95)
T ss_pred ceeEEEchhhcc--cCceEeCChhEEcCc---eeEEEEEEc------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeC
Confidence 579999999873 467899999999986 899999998 57999999997652 578999999999999
Q ss_pred cCCccccccccceeeeccCCCcccceee
Q psy10761 101 KREETKAMESQRAYRFVQGKDWGFKKFI 128 (365)
Q Consensus 101 ~~~~~~~~~~~~~~~f~~~~~~G~~~fi 128 (365)
++... .......|....+|||.+|+
T Consensus 71 ~~~~~---~~~~~~~F~~~~~~G~~~fi 95 (95)
T smart00061 71 NGKSL---SKKDKHVFEKPSGWGFSKFI 95 (95)
T ss_pred CCCEE---eeeeeEEEcCCCccceeeEC
Confidence 98654 22234567667789998875
No 29
>KOG1987|consensus
Probab=99.48 E-value=5.7e-13 Score=121.55 Aligned_cols=233 Identities=28% Similarity=0.339 Sum_probs=174.1
Q ss_pred EEEcccccccccCCCeeeccccccCCCCCccEEEEEecCCCCCCCCCeEEEEEEeecCCCceEEEEEEEEEEeccCCcc-
Q psy10761 27 WTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNKTEVRAKFKFSILNAKREET- 105 (365)
Q Consensus 27 w~I~nfs~~~~~~~~~~~S~~F~~~g~~~~~W~l~l~p~g~~~~~~~~lsl~L~~~~~~~~~~~~~~~~~l~~~~~~~~- 105 (365)
|.|.||+... ..++|..|..++. .|++.+||.|. +.+.|+.+...+.|.+.+.+.|.+.|+.....
T Consensus 8 ~~~~~~~~~~----l~~ys~~~~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~v~n~~~~~~~ 74 (297)
T KOG1987|consen 8 WVISNFSSVG----LVIYSNGFVKGGC---KWRLSAYPKGN------YLSLTLSVSDSPGWERYAKLRLTVVNQKSEKYL 74 (297)
T ss_pred eeeccCcchh----hhccccceeecCc---eEEEEEecCCC------EEEEEEEeccCCCcceeEEEEEEEccCCCccee
Confidence 9999999864 5678888888775 89999999973 78888877765689999999999999977642
Q ss_pred cccc-ccceeeec-cCCCcccceeeecccccccccCCCCCCeEEEEEEeEeeeccccccCCCCccccccCchhHHHHHHH
Q psy10761 106 KAME-SQRAYRFV-QGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEVSVVADSVNISGQSNAAQFKVPDCRLADNLGA 183 (365)
Q Consensus 106 ~~~~-~~~~~~f~-~~~~~G~~~fi~~~~l~~~~~~~l~dd~l~i~~~v~v~~~~~~~~~~~~~~~~~~p~~~l~~~l~~ 183 (365)
.... ....+.+. -...||+..+++...+.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------------------------------------------- 107 (297)
T KOG1987|consen 75 STVEEGFSWFRFNKVLKEWGFGKMLPLTLLIDC----------------------------------------------- 107 (297)
T ss_pred eeeeeeEEeccccccccccCcccccChHHhhcc-----------------------------------------------
Confidence 1110 11111110 0234444443333322111
Q ss_pred hhhcCCCccEEEEecCeEEehhHHHHhccCHHHHHhccccccccCCCeEEEccCCHHHHHHHhHhhccCCCCCcHHHHH-
Q psy10761 184 LFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTGRSTSLDKMAD- 262 (365)
Q Consensus 184 l~~~~~~~Dv~i~~~~~~~~~hk~iL~~~S~~F~~l~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~~- 262 (365)
.+..+.+|+.++++++++|+.|+..+..+.....+.+.+.++..++.+..|.|...-....+...
T Consensus 108 --------------~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~ 173 (297)
T KOG1987|consen 108 --------------SNGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFE 173 (297)
T ss_pred --------------cCcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhc
Confidence 14448889999999999999999887666666677888999999999999999976554455544
Q ss_pred --HHHHHHHhcChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCcHHHHHHHHHHHHH--cHHHHHCCccHHHHH
Q psy10761 263 --DLLAAADKYALERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINT--HATEVMDTVGWKQMI 333 (365)
Q Consensus 263 --~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~--~~~~v~~~~~~~~l~ 333 (365)
.++..|.+++.+.++..|+..+...+...++...+..+..+++..+...|..++.. ++..+....++....
T Consensus 174 ~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~~~~k 248 (297)
T KOG1987|consen 174 KHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNEVKEK 248 (297)
T ss_pred CChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHHHHHh
Confidence 78889999999999999999999988888888999999999999999999999986 666666545544433
No 30
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1e-09 Score=105.39 Aligned_cols=125 Identities=29% Similarity=0.516 Sum_probs=96.8
Q ss_pred EEEEEEEEcccccccccCCCeeeccccccCCCCCccEEEEEecCCCCCCCCCeEEEEEEeecC-------CCceEEEEEE
Q psy10761 22 KFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC-------NKTEVRAKFK 94 (365)
Q Consensus 22 ~~~~~w~I~nfs~~~~~~~~~~~S~~F~~~g~~~~~W~l~l~p~g~~~~~~~~lsl~L~~~~~-------~~~~~~~~~~ 94 (365)
.-+++|+|.+|+.+. ....||+|.+||+ .|+|.++|.|+. ...+++||..... ..|.|-|+|-
T Consensus 38 ~~sftW~vk~wsel~----~k~~Sp~F~vg~~---twki~lfPqG~n---q~~~sVyLe~~pqe~e~~~gk~~~ccaqFa 107 (1089)
T COG5077 38 EMSFTWKVKRWSELA----KKVESPPFSVGGH---TWKIILFPQGNN---QCNVSVYLEYEPQELEETGGKYYDCCAQFA 107 (1089)
T ss_pred hcccceecCChhhhh----hhccCCcccccCe---eEEEEEecccCC---ccccEEEEEeccchhhhhcCcchhhhhhee
Confidence 457899999999986 3688999999997 999999999954 3339999988753 3478999999
Q ss_pred EEEEeccCCccccccccceeeecc-CCCcccceeeecccccccccC---CCCCCeEEEEEEeEeeec
Q psy10761 95 FSILNAKREETKAMESQRAYRFVQ-GKDWGFKKFIRRDFLLDELNG---LLPEDKLTIFCEVSVVAD 157 (365)
Q Consensus 95 ~~l~~~~~~~~~~~~~~~~~~f~~-~~~~G~~~fi~~~~l~~~~~~---~l~dd~l~i~~~v~v~~~ 157 (365)
|.|-+..........+ ..++|+. ..+|||.+|+....+..+..| |+.+|.+.|.+.|.|.++
T Consensus 108 f~Is~p~~pti~~iN~-sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkd 173 (1089)
T COG5077 108 FDISNPKYPTIEYINK-SHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD 173 (1089)
T ss_pred eecCCCCCCchhhhhc-ccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeC
Confidence 9998875532222222 2456663 678999999999888776554 678999999999999875
No 31
>KOG0783|consensus
Probab=98.83 E-value=5.6e-09 Score=101.31 Aligned_cols=111 Identities=21% Similarity=0.354 Sum_probs=79.9
Q ss_pred ccCchhHHHHHHHhhhc----CCCccEEEEecCeEEehhHHHHhccCHHHHHhccccccccCC------------CeEEE
Q psy10761 171 KVPDCRLADNLGALFEI----QKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKH------------NRVDI 234 (365)
Q Consensus 171 ~~p~~~l~~~l~~l~~~----~~~~Dv~i~~~~~~~~~hk~iL~~~S~~F~~l~~~~~~e~~~------------~~i~l 234 (365)
.+|++++...+..++.. ..+.||+|.||++.|+|||.||++||++|+++|....+.+.. ..|.+
T Consensus 535 ~~~ss~fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~v 614 (1267)
T KOG0783|consen 535 RAASSNFEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRV 614 (1267)
T ss_pred ccccccchhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeee
Confidence 34456677777777753 457899999999999999999999999999998654332222 24457
Q ss_pred ccCCHHHHHHHhHhhccCCC--C--Cc----------HH-------HHHHHHHHHHhcChHHHHHHHH
Q psy10761 235 ADVDADVLREMLRFIYTGRS--T--SL----------DK-------MADDLLAAADKYALERLKVMCE 281 (365)
Q Consensus 235 ~~~~~~~f~~~L~~iY~~~~--~--~~----------~~-------~~~~ll~~A~~~~~~~l~~~c~ 281 (365)
+++.+..|+.+|+|||++.. + .+ .+ +...+...+.+|++.+|.....
T Consensus 615 e~i~p~mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~ 682 (1267)
T KOG0783|consen 615 EDIPPLMFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSV 682 (1267)
T ss_pred ccCCHHHHHHHHHHHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhh
Confidence 78999999999999999843 1 10 11 2334667788888777765443
No 32
>KOG0511|consensus
Probab=98.76 E-value=5.6e-08 Score=86.71 Aligned_cols=134 Identities=21% Similarity=0.210 Sum_probs=111.1
Q ss_pred eEEehhHHHHhccCHHHHHhccccccccCC----CeEEEccCCHHHHHHHhHhhccCCCCCcHHHHHHHHHHHHhcChH-
Q psy10761 200 QEFRAHKAILAAQSPVFMAMFEHEMEERKH----NRVDIADVDADVLREMLRFIYTGRSTSLDKMADDLLAAADKYALE- 274 (365)
Q Consensus 200 ~~~~~hk~iL~~~S~~F~~l~~~~~~e~~~----~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~~~ll~~A~~~~~~- 274 (365)
.+++||+.+++ |.+||..||.|++.|+.. ....++.....+.+..|+|+|+++..+..+-+.+++..|+++.+.
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~ 379 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALAD 379 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhh
Confidence 46999999998 999999999999999542 234567778899999999999999999999999999999998664
Q ss_pred -H-HHHHHHHHHHh---cCChHHHHHHHHHHHHcCcHHHHHHHHHHHHHcHHHHHCCccHHHHHh
Q psy10761 275 -R-LKVMCEEALCT---NLSIENAAEILILADLHSADQLKTQAIEFINTHATEVMDTVGWKQMIL 334 (365)
Q Consensus 275 -~-l~~~c~~~l~~---~l~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~~~~l~~ 334 (365)
. |+..+...|.+ .++.-++..++..+-......|...+..|+..|+..+...|++.....
T Consensus 380 dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~ 444 (516)
T KOG0511|consen 380 DRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLR 444 (516)
T ss_pred hhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 2 45555555543 345567889999999999999999999999999999999998877655
No 33
>KOG2838|consensus
Probab=98.40 E-value=5.3e-07 Score=77.21 Aligned_cols=118 Identities=25% Similarity=0.379 Sum_probs=78.4
Q ss_pred hHHHHHHHhhhcCC-CccEEEEe-cC--------------eEEehhHHHHhccCHHHHHhccccccccC---------CC
Q psy10761 176 RLADNLGALFEIQK-FSDVTLYS-AG--------------QEFRAHKAILAAQSPVFMAMFEHEMEERK---------HN 230 (365)
Q Consensus 176 ~l~~~l~~l~~~~~-~~Dv~i~~-~~--------------~~~~~hk~iL~~~S~~F~~l~~~~~~e~~---------~~ 230 (365)
.+..+++.+++..- +.|+.+.+ +| .++.||+.|.++||++|+.++.....+.. ..
T Consensus 221 kLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~Pk 300 (401)
T KOG2838|consen 221 KLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPK 300 (401)
T ss_pred hhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCc
Confidence 56677888887554 44555443 32 47999999999999999999865433321 23
Q ss_pred eEEEcc-CCHHHH-HHHhHhhccCCCCCcH----------------------------HHHHHHHHHHHhcChHHHHHHH
Q psy10761 231 RVDIAD-VDADVL-REMLRFIYTGRSTSLD----------------------------KMADDLLAAADKYALERLKVMC 280 (365)
Q Consensus 231 ~i~l~~-~~~~~f-~~~L~~iY~~~~~~~~----------------------------~~~~~ll~~A~~~~~~~l~~~c 280 (365)
.|.+++ +=|.+| ..+|+++||+.+..+. ..+.+++.+|-.|.+.-|.+.|
T Consensus 301 RIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~ 380 (401)
T KOG2838|consen 301 RIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQAC 380 (401)
T ss_pred eeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566654 334554 4788999998764321 2455677777778888888888
Q ss_pred HHHHHhcCChHHH
Q psy10761 281 EEALCTNLSIENA 293 (365)
Q Consensus 281 ~~~l~~~l~~~~~ 293 (365)
+..+......++.
T Consensus 381 e~Vir~acaadls 393 (401)
T KOG2838|consen 381 EDVIRKACAADLS 393 (401)
T ss_pred HHHHHhhhhhhcc
Confidence 7777665544443
No 34
>KOG2838|consensus
Probab=98.30 E-value=1.8e-06 Score=74.07 Aligned_cols=107 Identities=20% Similarity=0.273 Sum_probs=80.0
Q ss_pred ccCchhHHHHHHHhhhcCCCccEEEEecCeEEehhHHHHhccCHHHHHhccccccccCC--CeEEEccCCHHHHHHHhHh
Q psy10761 171 KVPDCRLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKH--NRVDIADVDADVLREMLRF 248 (365)
Q Consensus 171 ~~p~~~l~~~l~~l~~~~~~~Dv~i~~~~~~~~~hk~iL~~~S~~F~~l~~~~~~e~~~--~~i~l~~~~~~~f~~~L~~ 248 (365)
..|..++.+++.+.++..-..|+-|......|+|||++|++|||+|+.+...+...... -.|..-.++..+|+++|++
T Consensus 111 R~ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~ 190 (401)
T KOG2838|consen 111 RKEANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHS 190 (401)
T ss_pred CcchhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHH
Confidence 34556789999999888888999999999999999999999999999988664222211 2455568899999999999
Q ss_pred hccCCCCCcH---HHHHHHHHHHHhcChHHHH
Q psy10761 249 IYTGRSTSLD---KMADDLLAAADKYALERLK 277 (365)
Q Consensus 249 iY~~~~~~~~---~~~~~ll~~A~~~~~~~l~ 277 (365)
+|+|+.-..+ .++.-+-.++.-|+...-.
T Consensus 191 l~tgEfgmEd~~fqn~diL~QL~edFG~~kkL 222 (401)
T KOG2838|consen 191 LITGEFGMEDLGFQNSDILEQLCEDFGCFKKL 222 (401)
T ss_pred HHhcccchhhcCCchHHHHHHHHHhhCCchhh
Confidence 9999764322 3444455566667664433
No 35
>KOG2716|consensus
Probab=98.13 E-value=1.7e-05 Score=67.86 Aligned_cols=94 Identities=24% Similarity=0.423 Sum_probs=77.6
Q ss_pred EEEEecCeEEehhHHHHhccCHHHHHhcccccc-ccCCCeEEEccCCHHHHHHHhHhhccCCC--CCcHHHHHHHHHHHH
Q psy10761 193 VTLYSAGQEFRAHKAILAAQSPVFMAMFEHEME-ERKHNRVDIADVDADVLREMLRFIYTGRS--TSLDKMADDLLAAAD 269 (365)
Q Consensus 193 v~i~~~~~~~~~hk~iL~~~S~~F~~l~~~~~~-e~~~~~i~l~~~~~~~f~~~L~~iY~~~~--~~~~~~~~~ll~~A~ 269 (365)
+.+.|||..|..++.-|.....+|++|+..+.. +.....-.+-|=+|..|+.+|+|+-.|.+ +.+...+.+|++=|.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~ 86 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDGDVDLPESEKELKELLREAE 86 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcccccCccchHHHHHHHHHHH
Confidence 457899999999999999999999999988753 22222223346789999999999997665 456678899999999
Q ss_pred hcChHHHHHHHHHHHHh
Q psy10761 270 KYALERLKVMCEEALCT 286 (365)
Q Consensus 270 ~~~~~~l~~~c~~~l~~ 286 (365)
+|.++.|.+.|...|..
T Consensus 87 fYlL~~Lv~~C~~~i~~ 103 (230)
T KOG2716|consen 87 FYLLDGLVELCQSAIAR 103 (230)
T ss_pred HhhHHHHHHHHHHHhhh
Confidence 99999999999998764
No 36
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.94 E-value=1.7e-05 Score=58.97 Aligned_cols=87 Identities=23% Similarity=0.395 Sum_probs=66.1
Q ss_pred EEEEecCeEEehhHHHHh-ccCHHHHHhcccc---ccccCCCeEEEccCCHHHHHHHhHhhcc-CCCCCc-HHHHHHHHH
Q psy10761 193 VTLYSAGQEFRAHKAILA-AQSPVFMAMFEHE---MEERKHNRVDIADVDADVLREMLRFIYT-GRSTSL-DKMADDLLA 266 (365)
Q Consensus 193 v~i~~~~~~~~~hk~iL~-~~S~~F~~l~~~~---~~e~~~~~i~l~~~~~~~f~~~L~~iY~-~~~~~~-~~~~~~ll~ 266 (365)
|.|.|||+.|.+-+..|. ....+|..|+.++ ........+-+ |-+|..|+.+|+|+.+ +.++.. ......++.
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~ 79 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICLEELLE 79 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence 578999999999999998 5567899999864 34455566666 6799999999999999 666653 456788999
Q ss_pred HHHhcChHHH-HHHH
Q psy10761 267 AADKYALERL-KVMC 280 (365)
Q Consensus 267 ~A~~~~~~~l-~~~c 280 (365)
-|++|+++.+ ++.|
T Consensus 80 Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 80 EAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHT-HHHHBHHC
T ss_pred HHHHcCCCccccCCC
Confidence 9999999998 6655
No 37
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.53 E-value=0.00017 Score=64.40 Aligned_cols=88 Identities=13% Similarity=0.307 Sum_probs=74.0
Q ss_pred eEEehhHHHHhccCHHHHHhccccc-cccCCCeEEEc-cCCHHHHHHHhHhhccCCCCCcHHHHHHHHHHHHhcChHHHH
Q psy10761 200 QEFRAHKAILAAQSPVFMAMFEHEM-EERKHNRVDIA-DVDADVLREMLRFIYTGRSTSLDKMADDLLAAADKYALERLK 277 (365)
Q Consensus 200 ~~~~~hk~iL~~~S~~F~~l~~~~~-~e~~~~~i~l~-~~~~~~f~~~L~~iY~~~~~~~~~~~~~ll~~A~~~~~~~l~ 277 (365)
+.|.|.+.+|...=.||+..+.... ......+|+|. .-|..+|+-+++|+.+..-.++.+++..||.-|++++|+.|.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lv 93 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESLV 93 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHHH
Confidence 6799999999999999999996521 12223456664 578899999999999988888999999999999999999999
Q ss_pred HHHHHHHHhc
Q psy10761 278 VMCEEALCTN 287 (365)
Q Consensus 278 ~~c~~~l~~~ 287 (365)
+.|..|+..+
T Consensus 94 e~cl~y~~~~ 103 (317)
T PF11822_consen 94 EECLQYCHDH 103 (317)
T ss_pred HHHHHHHHHh
Confidence 9999998654
No 38
>KOG3473|consensus
Probab=97.47 E-value=0.0006 Score=49.07 Aligned_cols=74 Identities=26% Similarity=0.352 Sum_probs=60.7
Q ss_pred cCeEEehhHHHHhccCHHHHHhcccc--ccccCCCeEEEccCCHHHHHHHhHhh-c----cC------CCCCcHHHHHHH
Q psy10761 198 AGQEFRAHKAILAAQSPVFMAMFEHE--MEERKHNRVDIADVDADVLREMLRFI-Y----TG------RSTSLDKMADDL 264 (365)
Q Consensus 198 ~~~~~~~hk~iL~~~S~~F~~l~~~~--~~e~~~~~i~l~~~~~~~f~~~L~~i-Y----~~------~~~~~~~~~~~l 264 (365)
+|.+|-..|.+ |.-|+-.++|+.|+ +.+...+++.+++++...++.+.+|+ | ++ ++++..+.+.+|
T Consensus 25 Ddhefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleL 103 (112)
T KOG3473|consen 25 DDHEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALEL 103 (112)
T ss_pred CCcEEEEeehh-hhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHH
Confidence 56777777765 44899999999986 56777899999999999999999998 3 33 245778999999
Q ss_pred HHHHHhcC
Q psy10761 265 LAAADKYA 272 (365)
Q Consensus 265 l~~A~~~~ 272 (365)
|.+|+++.
T Consensus 104 L~aAn~Le 111 (112)
T KOG3473|consen 104 LMAANYLE 111 (112)
T ss_pred HHHhhhhc
Confidence 99999875
No 39
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.17 E-value=0.002 Score=48.82 Aligned_cols=58 Identities=21% Similarity=0.392 Sum_probs=45.7
Q ss_pred EEEE-ecCeEEehhHHHHhccCHHHHHhcccccccc-CCCeEEEccCCHHHHHHHhHhhcc
Q psy10761 193 VTLY-SAGQEFRAHKAILAAQSPVFMAMFEHEMEER-KHNRVDIADVDADVLREMLRFIYT 251 (365)
Q Consensus 193 v~i~-~~~~~~~~hk~iL~~~S~~F~~l~~~~~~e~-~~~~i~l~~~~~~~f~~~L~~iY~ 251 (365)
++++ .+|.+|.+.+.+.. +|..++.|+.+...+. ....|.+++++..+++.+++|++.
T Consensus 4 v~L~S~Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~ 63 (104)
T smart00512 4 IKLISSDGEVFEVEREVAR-QSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEH 63 (104)
T ss_pred EEEEeCCCCEEEecHHHHH-HHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHH
Confidence 4444 47889999999875 9999999996532222 225899999999999999999965
No 40
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=97.16 E-value=0.00094 Score=50.28 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcHHHHHCCccHHHHHhhChHHHHHHHH
Q psy10761 293 AAEILILADLHSADQLKTQAIEFINTHATEVMDTVGWKQMILSHPHLIAEAFR 345 (365)
Q Consensus 293 ~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~~~~l~~~~~~~~~~l~~ 345 (365)
|+.++.+|..|++..|.+.|.+||..|+.++..+++|.+|+. +.+..++.
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~---~~l~~iL~ 50 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPF---DQLIEILS 50 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-H---HHHHHHHH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCH---HHHHHHHh
Confidence 678999999999999999999999999999999999999873 55555554
No 41
>KOG1863|consensus
Probab=96.82 E-value=0.0013 Score=69.92 Aligned_cols=131 Identities=20% Similarity=0.140 Sum_probs=98.4
Q ss_pred EEEEEEEEEEEEEEcccccccccCCCeeeccccccCCCCCccEEEEEecCCCCCCCCCeEEEEEEeecCCC---ceEEEE
Q psy10761 16 LQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNK---TEVRAK 92 (365)
Q Consensus 16 ~~~~~~~~~~~w~I~nfs~~~~~~~~~~~S~~F~~~g~~~~~W~l~l~p~g~~~~~~~~lsl~L~~~~~~~---~~~~~~ 92 (365)
+..+....+.+|.+.+...... ...|+.|..|+ .+|++.+.|++. ....++.|+.|..... |.+.+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~ 89 (1093)
T KOG1863|consen 20 DQQTSLNQSTTIDGIDDKSLLY----RALSSNFGAGA---TKWKILIAPKVN---SLQSTRKKLEVMPSQSLKSWSCGAQ 89 (1093)
T ss_pred cccchhcccccccCcCcchhhh----HhcCccccccc---cceeeeeccccC---cccceeEEeeeccCCCCcceEecch
Confidence 4445555566687777776552 56788998887 499999999985 4677999999987643 899999
Q ss_pred EEEEEEeccCCccccccccceeeec-cCCCcccceeeecccccccccCCCCCCeEEEEEEeEeeec
Q psy10761 93 FKFSILNAKREETKAMESQRAYRFV-QGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEVSVVAD 157 (365)
Q Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~f~-~~~~~G~~~fi~~~~l~~~~~~~l~dd~l~i~~~v~v~~~ 157 (365)
+.+.+.|. ............+.|. ...+||+..|..++++.++..+|+.+|.+.+++.+.+...
T Consensus 90 ~~~~v~~~-~~~~~~~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~ 154 (1093)
T KOG1863|consen 90 AVLRVKNT-IDNLPDPEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQP 154 (1093)
T ss_pred hhhccccC-CCCchhhhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecC
Confidence 99999993 3322222211223343 4678999999999999999999999999999999988653
No 42
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.77 E-value=0.0066 Score=41.09 Aligned_cols=56 Identities=25% Similarity=0.420 Sum_probs=44.3
Q ss_pred EEEE-ecCeEEehhHHHHhccCHHHHHhccccccccCCCeEEEccCCHHHHHHHhHhhcc
Q psy10761 193 VTLY-SAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYT 251 (365)
Q Consensus 193 v~i~-~~~~~~~~hk~iL~~~S~~F~~l~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY~ 251 (365)
++++ .+|+.|.+.+.++. .|..++.|+.+...+.. .|.+++++...++.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccCccCHHHHHHHHHHHHh
Confidence 3444 48899999999877 99999999975433322 899999999999999999963
No 43
>KOG0511|consensus
Probab=96.68 E-value=0.005 Score=55.81 Aligned_cols=102 Identities=18% Similarity=0.267 Sum_probs=73.7
Q ss_pred HHHHHHhhhcCCC---ccEEEEe-cCeEEehhHHHHhccCHHHHHhccccccccCCCeEEEccCCHHHHHHHhHhhccCC
Q psy10761 178 ADNLGALFEIQKF---SDVTLYS-AGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTGR 253 (365)
Q Consensus 178 ~~~l~~l~~~~~~---~Dv~i~~-~~~~~~~hk~iL~~~S~~F~~l~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY~~~ 253 (365)
...+..++.+..+ .|+++.. .|..|.|||.+|++||.+|..-+..-+ ....+|+-..+-+.+|..+|+|+|-..
T Consensus 134 aahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~~v~~~~f~~flk~lyl~~ 211 (516)
T KOG0511|consen 134 AAHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAHRVILSAFSPFLKQLYLNT 211 (516)
T ss_pred chHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhhhhhHhhhhHHHHHHHHhh
Confidence 4566666665543 5777765 677899999999999998765332111 123456556677899999999999875
Q ss_pred CCCcHHHHHHHHHHHHhcChHHHHHHHH
Q psy10761 254 STSLDKMADDLLAAADKYALERLKVMCE 281 (365)
Q Consensus 254 ~~~~~~~~~~ll~~A~~~~~~~l~~~c~ 281 (365)
-.+..+....++.+..+|+++.+....+
T Consensus 212 na~~~~qynallsi~~kF~~e~l~~~~~ 239 (516)
T KOG0511|consen 212 NAEWKDQYNALLSIEVKFSKEKLSLEIS 239 (516)
T ss_pred hhhhhhHHHHHHhhhhhccHHHhHHHHh
Confidence 5555666788999999999988775443
No 44
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=96.38 E-value=0.0054 Score=45.72 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcHHHHHCCccHHHHHhhChHHHHHHH
Q psy10761 293 AAEILILADLHSADQLKTQAIEFINTHATEVMDTVGWKQMILSHPHLIAEAF 344 (365)
Q Consensus 293 ~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~~~~l~~~~~~~~~~l~ 344 (365)
|+.++.+|..|++..|.+.|.+|+..|+..+.++++|.+|+. +.+.+++
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~---~~l~~iL 49 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSL---EQLLSLL 49 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCH---HHHHHHh
Confidence 356788899999999999999999999999999999988863 4444444
No 45
>KOG1724|consensus
Probab=96.37 E-value=0.025 Score=46.07 Aligned_cols=91 Identities=14% Similarity=0.232 Sum_probs=66.9
Q ss_pred ecCeEEehhHHHHhccCHHHHHhccccccccCCCeEEEccCCHHHHHHHhHhhccCCCC---------------------
Q psy10761 197 SAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTGRST--------------------- 255 (365)
Q Consensus 197 ~~~~~~~~hk~iL~~~S~~F~~l~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY~~~~~--------------------- 255 (365)
.+|+.|.+-..++. .|..+.+++...--......|.|+.++...|..+|+|++.-.-.
T Consensus 12 sDG~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~ 90 (162)
T KOG1724|consen 12 SDGEIFEVEEEVAR-QSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDA 90 (162)
T ss_pred cCCceeehhHHHHH-HhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHH
Confidence 47888998888765 88888887753211111158999999999999999999873211
Q ss_pred ----CcHHHHHHHHHHHHhcChHHHHHHHHHHHHhcC
Q psy10761 256 ----SLDKMADDLLAAADKYALERLKVMCEEALCTNL 288 (365)
Q Consensus 256 ----~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l 288 (365)
+...++.+++.+|++++++.|.++|...+...+
T Consensus 91 ~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mi 127 (162)
T KOG1724|consen 91 EFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMI 127 (162)
T ss_pred HHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 112467888889999999999998888776544
No 46
>KOG0297|consensus
Probab=95.98 E-value=0.0041 Score=58.64 Aligned_cols=84 Identities=20% Similarity=0.323 Sum_probs=69.4
Q ss_pred EEEEEEEEEEEEEEcccccccc----cCCCeeeccccccCCCCCccEEEEEecCCCCCCCCCeEEEEEEeecC-----CC
Q psy10761 16 LQVKVVKFSYMWTINNFSFCRE----EMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSC-----NK 86 (365)
Q Consensus 16 ~~~~~~~~~~~w~I~nfs~~~~----~~~~~~~S~~F~~~g~~~~~W~l~l~p~g~~~~~~~~lsl~L~~~~~-----~~ 86 (365)
++.....++..|+|.++...+. ..+..+.|+.|+..-+ |++-+..+|-||.+.+.+.++|+|++...+ -.
T Consensus 273 ~~~~~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~-Gyk~~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~ 351 (391)
T KOG0297|consen 273 MEVRSYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKY-GYKLCARIYLNGDGTGKGTHLSLYFVVMRGEYDALLP 351 (391)
T ss_pred hhhhccCCEEEEEecchhhhhHHHHhccCccccccccccccc-cHHHHhHhhhcCCCCCCcceeeeeeeecccCcccccc
Confidence 3445678899999999965443 3466899999988765 589999999999888889999999998876 36
Q ss_pred ceEEEEEEEEEEec
Q psy10761 87 TEVRAKFKFSILNA 100 (365)
Q Consensus 87 ~~~~~~~~~~l~~~ 100 (365)
|+..-+++|.++++
T Consensus 352 wpf~~~v~~~l~dq 365 (391)
T KOG0297|consen 352 WPFRQKVTLMLLDQ 365 (391)
T ss_pred cCCCCceEEEEecc
Confidence 88899999999999
No 47
>KOG2714|consensus
Probab=95.66 E-value=0.043 Score=50.84 Aligned_cols=86 Identities=23% Similarity=0.302 Sum_probs=67.1
Q ss_pred EEEEecCeEEehhHHHHhccC--HHHHHhccccccccCCC-eEEEccCCHHHHHHHhHhhccCCCCCcHHHHHHHHH-HH
Q psy10761 193 VTLYSAGQEFRAHKAILAAQS--PVFMAMFEHEMEERKHN-RVDIADVDADVLREMLRFIYTGRSTSLDKMADDLLA-AA 268 (365)
Q Consensus 193 v~i~~~~~~~~~hk~iL~~~S--~~F~~l~~~~~~e~~~~-~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~~~ll~-~A 268 (365)
|.|.|+|+.|...+..|+... .+|.+++.+.+.-.... -..+-|=+|+.|..+|+|+-|++++........++. =|
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~~~~llhdEA 92 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVFPERLLHDEA 92 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCchhhhhhhhh
Confidence 558999999999999997544 78999998765433322 234447789999999999999999986555555555 89
Q ss_pred HhcChHHHHH
Q psy10761 269 DKYALERLKV 278 (365)
Q Consensus 269 ~~~~~~~l~~ 278 (365)
.+|++..|.+
T Consensus 93 ~fYGl~~llr 102 (465)
T KOG2714|consen 93 MFYGLTPLLR 102 (465)
T ss_pred hhcCcHHHHH
Confidence 9999988876
No 48
>KOG1778|consensus
Probab=95.39 E-value=0.011 Score=53.52 Aligned_cols=145 Identities=19% Similarity=0.201 Sum_probs=115.4
Q ss_pred cEEEEecCeEEehhHHHHhccCHHHHHhccccccccCCCeEEEccCCHHHHHHHhHhhccCCCCCc--HHHHHHHHHHHH
Q psy10761 192 DVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTGRSTSL--DKMADDLLAAAD 269 (365)
Q Consensus 192 Dv~i~~~~~~~~~hk~iL~~~S~~F~~l~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY~~~~~~~--~~~~~~ll~~A~ 269 (365)
|.++...+..+.+|+.+|+..|+.|..+....-..+....+.+..+....+..+..++|.. +..- ......++.+..
T Consensus 28 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~ 106 (319)
T KOG1778|consen 28 VEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSH 106 (319)
T ss_pred hhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhhhh
Confidence 3444556678999999999999999987755433334456777788889999999999987 3321 234566777778
Q ss_pred hcChHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCcHHHHHHHHHHHHHcHHHHHCCccHHHHHhhCh
Q psy10761 270 KYALERLKVMCEEALCT-NLSIENAAEILILADLHSADQLKTQAIEFINTHATEVMDTVGWKQMILSHP 337 (365)
Q Consensus 270 ~~~~~~l~~~c~~~l~~-~l~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~~~~l~~~~~ 337 (365)
.|.++..+..|...+.. .++..++...+..+..+....|...+...+...+.....++.+..+....+
T Consensus 107 ~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~~c~~c 175 (319)
T KOG1778|consen 107 VYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAYTCPIC 175 (319)
T ss_pred hhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceeeecCcc
Confidence 99999999999888765 568889999999999999999999999999999999999888877765544
No 49
>KOG1665|consensus
Probab=95.26 E-value=0.057 Score=45.61 Aligned_cols=91 Identities=21% Similarity=0.277 Sum_probs=69.8
Q ss_pred cEEEEecCeEEehhHHHHhccC--HHHHHhcccc--ccccCCCeEEEccCCHHHHHHHhHhhccCCCCC-cHHHHHHHHH
Q psy10761 192 DVTLYSAGQEFRAHKAILAAQS--PVFMAMFEHE--MEERKHNRVDIADVDADVLREMLRFIYTGRSTS-LDKMADDLLA 266 (365)
Q Consensus 192 Dv~i~~~~~~~~~hk~iL~~~S--~~F~~l~~~~--~~e~~~~~i~l~~~~~~~f~~~L~~iY~~~~~~-~~~~~~~ll~ 266 (365)
=|.+.++|+.|..-...|..|- ..+..||.+. +.+....-..+-|-+|..|+-+|.|+-.|.++. +.-.+..+|+
T Consensus 10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLe 89 (302)
T KOG1665|consen 10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLE 89 (302)
T ss_pred hheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHHHHH
Confidence 3557788988887776666654 4678888764 333333445566789999999999999998864 4567899999
Q ss_pred HHHhcChHHHHHHHHH
Q psy10761 267 AADKYALERLKVMCEE 282 (365)
Q Consensus 267 ~A~~~~~~~l~~~c~~ 282 (365)
.|++|++-.|++-.++
T Consensus 90 eArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 90 EARFFQILSLKDHLED 105 (302)
T ss_pred HhhHHhhHhHHhHHhh
Confidence 9999999999987777
No 50
>KOG2715|consensus
Probab=94.56 E-value=0.2 Score=40.33 Aligned_cols=95 Identities=18% Similarity=0.268 Sum_probs=72.1
Q ss_pred EEEEecCeEEehhHHHHhccCHHHHH-hccccc---cccCCCeEEEccCCHHHHHHHhHhhccCCCCCcHHHHHHHHHHH
Q psy10761 193 VTLYSAGQEFRAHKAILAAQSPVFMA-MFEHEM---EERKHNRVDIADVDADVLREMLRFIYTGRSTSLDKMADDLLAAA 268 (365)
Q Consensus 193 v~i~~~~~~~~~hk~iL~~~S~~F~~-l~~~~~---~e~~~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~~~~~~ll~~A 268 (365)
|.+.|+|..|..-|..|+.-+.-|-. +.+... ......--.+-|-+|.-|..+|+|+-.|++.++.-.-..+|.-|
T Consensus 23 VRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~eeGvL~EA 102 (210)
T KOG2715|consen 23 VRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLSEEGVLEEA 102 (210)
T ss_pred EEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhhhhccchhh
Confidence 45678999999999999988855544 444431 11222334556778999999999999999987764456789999
Q ss_pred HhcChHHHHHHHHHHHHhc
Q psy10761 269 DKYALERLKVMCEEALCTN 287 (365)
Q Consensus 269 ~~~~~~~l~~~c~~~l~~~ 287 (365)
+.|.++.|..+..+.|...
T Consensus 103 efyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 103 EFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred hccCChHHHHHHHHHHHHH
Confidence 9999999999988888654
No 51
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.53 E-value=1.2 Score=34.21 Aligned_cols=95 Identities=17% Similarity=0.187 Sum_probs=63.7
Q ss_pred cEEEE-ecCeEEehhHHHHhccCHHHHHhccccccccCCCeEEEccCCHHHHHHHhHhhccCCCCC--------------
Q psy10761 192 DVTLY-SAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTGRSTS-------------- 256 (365)
Q Consensus 192 Dv~i~-~~~~~~~~hk~iL~~~S~~F~~l~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY~~~~~~-------------- 256 (365)
-+.++ .+|+.|.+.+.+ |-+|-..+.|+... ....-.+.++.+...+|..+++|+-...-..
T Consensus 3 ~i~l~s~dge~F~vd~~i-AerSiLikN~l~d~--~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p 79 (158)
T COG5201 3 MIELESIDGEIFRVDENI-AERSILIKNMLCDS--TACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKP 79 (158)
T ss_pred ceEEEecCCcEEEehHHH-HHHHHHHHHHhccc--cccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCC
Confidence 34444 477888877765 55888888876431 1112346778999999999999995432110
Q ss_pred -----------cHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCC
Q psy10761 257 -----------LDKMADDLLAAADKYALERLKVMCEEALCTNLS 289 (365)
Q Consensus 257 -----------~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~ 289 (365)
+.+.+.++..+|+++.++.|.+.|...+...+.
T Consensus 80 ~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemir 123 (158)
T COG5201 80 SDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIR 123 (158)
T ss_pred ccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHc
Confidence 114567777888999999999888877654443
No 52
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=90.59 E-value=0.64 Score=32.93 Aligned_cols=47 Identities=17% Similarity=0.161 Sum_probs=31.4
Q ss_pred cHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHc
Q psy10761 257 LDKMADDLLAAADKYALERLKVMCEEALCTNLS---IENAAEILILADLH 303 (365)
Q Consensus 257 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~---~~~~~~~l~~a~~~ 303 (365)
+.+.+.+|+.+|++++++.|.+.|...+...+. ++-+..++.+...+
T Consensus 12 ~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~ 61 (78)
T PF01466_consen 12 DNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDL 61 (78)
T ss_dssp -HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TS
T ss_pred CHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCC
Confidence 567889999999999999999999998875544 34444444444433
No 53
>KOG2075|consensus
Probab=85.39 E-value=2.1 Score=40.65 Aligned_cols=58 Identities=17% Similarity=0.332 Sum_probs=45.7
Q ss_pred CChHHHHHHHHHHHHcCcHHHHHHHHHHHHHcHHHHHCCccHHHHHh-----hChHHHHHHHHHHh
Q psy10761 288 LSIENAAEILILADLHSADQLKTQAIEFINTHATEVMDTVGWKQMIL-----SHPHLIAEAFRALA 348 (365)
Q Consensus 288 l~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~~~~l~~-----~~~~~~~~l~~~~~ 348 (365)
+..+|++.++..|.+|....|...|++||..+ ++.-.+|..|.+ +.|+++..+++.+.
T Consensus 185 ~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~---l~~~naf~~L~q~A~lf~ep~Li~~c~e~id 247 (521)
T KOG2075|consen 185 LAADTVITTLYAAKKYLVPALERQCVKFLRKN---LMADNAFLELFQRAKLFDEPSLISICLEVID 247 (521)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---cCChHHHHHHHHHHHhhcCHHHHHHHHHHhh
Confidence 57899999999999999999999999999865 445556777776 36777666665543
No 54
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=78.48 E-value=1.2 Score=40.30 Aligned_cols=42 Identities=19% Similarity=0.423 Sum_probs=38.2
Q ss_pred hcCChHHHHHHHHHHHHcCcHHHHHHHHHHHHHcHHHHHCCc
Q psy10761 286 TNLSIENAAEILILADLHSADQLKTQAIEFINTHATEVMDTV 327 (365)
Q Consensus 286 ~~l~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~ 327 (365)
..+++.|++.++.-++-..++.|.+.|+.|+..|+.+|+.++
T Consensus 70 p~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~ 111 (317)
T PF11822_consen 70 PSLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASP 111 (317)
T ss_pred CcCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCC
Confidence 357899999999999999999999999999999999988754
No 55
>KOG2723|consensus
Probab=76.04 E-value=7.2 Score=33.56 Aligned_cols=94 Identities=20% Similarity=0.273 Sum_probs=60.5
Q ss_pred CCccEE-EEecCeEEehhHHHHh-ccCHHHHHhccccc--cccCCCeEEEccCCHHHHHHHhHhhccCCCCCcH--HHHH
Q psy10761 189 KFSDVT-LYSAGQEFRAHKAILA-AQSPVFMAMFEHEM--EERKHNRVDIADVDADVLREMLRFIYTGRSTSLD--KMAD 262 (365)
Q Consensus 189 ~~~Dv~-i~~~~~~~~~hk~iL~-~~S~~F~~l~~~~~--~e~~~~~i~l~~~~~~~f~~~L~~iY~~~~~~~~--~~~~ 262 (365)
.+.|++ +-++|..|..-..-|. -.-....+||++.. ....+....| |=+-..|+.+|+|+-+....+.+ .++.
T Consensus 6 ~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~f~e~~ 84 (221)
T KOG2723|consen 6 EYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPEDFAEVE 84 (221)
T ss_pred ccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccchhhhhHH
Confidence 455655 5567766654444343 33445667776522 1222233333 45678999999999995555544 6788
Q ss_pred HHHHHHHhcChHHHHHHHHHH
Q psy10761 263 DLLAAADKYALERLKVMCEEA 283 (365)
Q Consensus 263 ~ll~~A~~~~~~~l~~~c~~~ 283 (365)
.+...|+.|+++.+..+..+.
T Consensus 85 ~L~rEA~f~~l~~~~~~l~~~ 105 (221)
T KOG2723|consen 85 RLVREAEFFQLEAPVTYLLNS 105 (221)
T ss_pred HHHHHHHHHccccHHHHHhcc
Confidence 999999999999877765543
No 56
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=74.21 E-value=8.8 Score=28.20 Aligned_cols=59 Identities=25% Similarity=0.428 Sum_probs=38.1
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHhcC------------ChHHHHHHHHHHHH--cCcHHHHHHHHHHHHHcH
Q psy10761 262 DDLLAAADKYALERLKVMCEEALCTNL------------SIENAAEILILADL--HSADQLKTQAIEFINTHA 320 (365)
Q Consensus 262 ~~ll~~A~~~~~~~l~~~c~~~l~~~l------------~~~~~~~~l~~a~~--~~~~~L~~~~~~~i~~~~ 320 (365)
.+++.+|..|+++.|...|.+++..+. +.+.+..++.--.. .+-..+.+.+++|+..+.
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~ 74 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNP 74 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCH
Confidence 478899999999999999999997542 22223333331111 233468888888887553
No 57
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=69.48 E-value=7.6 Score=28.91 Aligned_cols=30 Identities=33% Similarity=0.392 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHcCcHHHHHHHHHHHHHc
Q psy10761 290 IENAAEILILADLHSADQLKTQAIEFINTH 319 (365)
Q Consensus 290 ~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~ 319 (365)
.+++..++.+|..|+++.|...|.+++.++
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 788999999999999999999999999865
No 58
>KOG4350|consensus
Probab=62.86 E-value=23 Score=33.21 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=46.2
Q ss_pred CHHHHHhccccccccCCCeEEEccCCHHHHHHHhHhhccCCCCC-------------cHHHHHHHHHHHHhcChHHHHHH
Q psy10761 213 SPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTGRSTS-------------LDKMADDLLAAADKYALERLKVM 279 (365)
Q Consensus 213 S~~F~~l~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY~~~~~~-------------~~~~~~~ll~~A~~~~~~~l~~~ 279 (365)
+.-|+.++.- --.+.+.+.+++-+.+-.+|...+.-.+.. ..+++..++.+|..|++++|.+.
T Consensus 93 ~eAF~~lLrY----iYtg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~ 168 (620)
T KOG4350|consen 93 SEAFRALLRY----IYTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDY 168 (620)
T ss_pred HHHHHHHHHH----HhhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHH
Confidence 4555555421 224567888888777777776654433321 11455567789999999999999
Q ss_pred HHHHHHh
Q psy10761 280 CEEALCT 286 (365)
Q Consensus 280 c~~~l~~ 286 (365)
|..|+-+
T Consensus 169 C~mfmDr 175 (620)
T KOG4350|consen 169 CMMFMDR 175 (620)
T ss_pred HHHHHhc
Confidence 9998754
No 59
>KOG3840|consensus
Probab=57.89 E-value=13 Score=33.33 Aligned_cols=84 Identities=14% Similarity=0.276 Sum_probs=56.0
Q ss_pred CccEEEEecCeEEehhHHHHhccC-HHHHHhcccccc---ccCCCeEEE-ccCCHHHHHHHhHhhccCCCCCc-HHHHHH
Q psy10761 190 FSDVTLYSAGQEFRAHKAILAAQS-PVFMAMFEHEME---ERKHNRVDI-ADVDADVLREMLRFIYTGRSTSL-DKMADD 263 (365)
Q Consensus 190 ~~Dv~i~~~~~~~~~hk~iL~~~S-~~F~~l~~~~~~---e~~~~~i~l-~~~~~~~f~~~L~~iY~~~~~~~-~~~~~~ 263 (365)
.--++..+++..|.+.+.+|.++- ...-.||.+++. .....+.++ +++...+|+++|+|--+|-+.-. .-.+.+
T Consensus 95 ~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvpE 174 (438)
T KOG3840|consen 95 GDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVSE 174 (438)
T ss_pred CcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCchHH
Confidence 345677889999999998887553 334556665432 223455655 57899999999999999876432 234455
Q ss_pred HHHHHHhcCh
Q psy10761 264 LLAAADKYAL 273 (365)
Q Consensus 264 ll~~A~~~~~ 273 (365)
|-+++|++.+
T Consensus 175 LrEACDYLli 184 (438)
T KOG3840|consen 175 LREACDYLLV 184 (438)
T ss_pred HHhhcceEEe
Confidence 6666665544
No 60
>PHA03098 kelch-like protein; Provisional
Probab=56.96 E-value=29 Score=34.36 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=30.1
Q ss_pred cCChHHHHHHHHHHHHcCcHHHHHHHHHHHHHc
Q psy10761 287 NLSIENAAEILILADLHSADQLKTQAIEFINTH 319 (365)
Q Consensus 287 ~l~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~ 319 (365)
.++.+++.+++..|+.++.+.|++.|.+|+..+
T Consensus 72 ~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~ 104 (534)
T PHA03098 72 NITSNNVKDILSIANYLIIDFLINLCINYIIKI 104 (534)
T ss_pred EEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 368889999999999999999999999999863
No 61
>PHA02713 hypothetical protein; Provisional
Probab=44.24 E-value=44 Score=33.46 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=33.5
Q ss_pred HHHHHHH-hcCChHHHHHHHHHHHHcCcHHHHHHHHHHHHHc
Q psy10761 279 MCEEALC-TNLSIENAAEILILADLHSADQLKTQAIEFINTH 319 (365)
Q Consensus 279 ~c~~~l~-~~l~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~ 319 (365)
...+|+- ..++.+|+..++..|..++.+.|++.|.+|+..+
T Consensus 81 ~ll~y~Yt~~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~ 122 (557)
T PHA02713 81 NIVQYLYNRHISSMNVIDVLKCADYLLIDDLVTDCESYIKDY 122 (557)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhh
Confidence 3334443 2478899999999999999999999999999853
No 62
>KOG4682|consensus
Probab=36.31 E-value=35 Score=32.08 Aligned_cols=32 Identities=41% Similarity=0.365 Sum_probs=28.8
Q ss_pred CcHHHHHHHHHHHHhcChHHHHHHHHHHHHhc
Q psy10761 256 SLDKMADDLLAAADKYALERLKVMCEEALCTN 287 (365)
Q Consensus 256 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 287 (365)
++++++...+.+|.+|+++.++..|.++|..+
T Consensus 170 lspkta~~yYea~ckYgle~vk~kc~ewl~~n 201 (488)
T KOG4682|consen 170 LSPKTACGYYEAACKYGLESVKKKCLEWLLNN 201 (488)
T ss_pred cChhhhhHhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 56789999999999999999999999998753
No 63
>PHA02790 Kelch-like protein; Provisional
Probab=32.62 E-value=85 Score=30.72 Aligned_cols=43 Identities=19% Similarity=0.102 Sum_probs=34.3
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHHcCcHHHHHHHHHHHHHc
Q psy10761 277 KVMCEEALCT---NLSIENAAEILILADLHSADQLKTQAIEFINTH 319 (365)
Q Consensus 277 ~~~c~~~l~~---~l~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~ 319 (365)
.+...+|+-. .++.+|+..++..|..++.+.+.+.|.+|+.++
T Consensus 74 l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~ 119 (480)
T PHA02790 74 LTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEFIIYTCINFILRD 119 (480)
T ss_pred HHHHHHhheeeeEEEecccHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence 3344455532 368899999999999999999999999999853
No 64
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=31.90 E-value=61 Score=23.23 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=21.8
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHhc
Q psy10761 262 DDLLAAADKYALERLKVMCEEALCTN 287 (365)
Q Consensus 262 ~~ll~~A~~~~~~~l~~~c~~~l~~~ 287 (365)
.+++.+|+.|+.+.|.+.|.+++..+
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~n 27 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILKN 27 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 35778899999999999999998654
No 65
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=30.08 E-value=1.6e+02 Score=20.55 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=29.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCcHHHHHHHHHHHHHcH
Q psy10761 281 EEALCTNLSIENAAEILILADLHSADQLKTQAIEFINTHA 320 (365)
Q Consensus 281 ~~~l~~~l~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~~ 320 (365)
.+|+ .++...++.++..|.-.+...|.+.|.++++..+
T Consensus 6 ~~F~--~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i 43 (78)
T PF01466_consen 6 QEFL--DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMI 43 (78)
T ss_dssp HHHT---S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH
T ss_pred HHHH--HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHh
Confidence 3455 5688889999999999999999999999998543
No 66
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=28.69 E-value=4.7e+02 Score=24.16 Aligned_cols=42 Identities=10% Similarity=0.231 Sum_probs=26.1
Q ss_pred cCcHHHHHHHHHHHHHcHHHHHCCccHHHHHhhChHHHHHHHHHH
Q psy10761 303 HSADQLKTQAIEFINTHATEVMDTVGWKQMILSHPHLIAEAFRAL 347 (365)
Q Consensus 303 ~~~~~L~~~~~~~i~~~~~~v~~~~~~~~l~~~~~~~~~~l~~~~ 347 (365)
.+..+++..+.+.+.+.+..+.+ .+.++.+ ++..+.++++.-
T Consensus 268 ~~~~~lK~~la~~i~~~l~pire--~~~~~~~-~~~~~~~il~~G 309 (333)
T PRK00927 268 KGYGDFKKDLAEAVVEFLAPIRE--RYEELLA-DPAYLDEILAEG 309 (333)
T ss_pred CChHHHHHHHHHHHHHHHHHHHH--HHHHHHc-CHHHHHHHHHHH
Confidence 34567777777777776666643 5555654 556666666543
No 67
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=28.34 E-value=2e+02 Score=25.63 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=49.3
Q ss_pred cCCHHHHHHHhHhhccCCCCCcHHHHHHHHHHHHhcChH-HHHHHHHHHHHhcCChHHHHHHHHHH
Q psy10761 236 DVDADVLREMLRFIYTGRSTSLDKMADDLLAAADKYALE-RLKVMCEEALCTNLSIENAAEILILA 300 (365)
Q Consensus 236 ~~~~~~f~~~L~~iY~~~~~~~~~~~~~ll~~A~~~~~~-~l~~~c~~~l~~~l~~~~~~~~l~~a 300 (365)
......++.++.-+-.++-.++...+..+|.+|..++.. ..+...|+.+...++..++-.++.-+
T Consensus 67 ~~~r~llEtiV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~ 132 (258)
T PF03000_consen 67 NEQRELLETIVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS 132 (258)
T ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC
Confidence 344677888888888887778889999999999999884 44556666666666766776666655
No 68
>PF06887 DUF1265: Protein of unknown function (DUF1265); InterPro: IPR009676 This family represents a conserved region approximately 50 residues long within a number of proteins of unknown function that seem to be restricted to Caenorhabditis elegans.
Probab=23.07 E-value=1.1e+02 Score=19.11 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHH-cHHHHH
Q psy10761 291 ENAAEILILADLHSADQLKTQAIEFINT-HATEVM 324 (365)
Q Consensus 291 ~~~~~~l~~a~~~~~~~L~~~~~~~i~~-~~~~v~ 324 (365)
.-+..++..|+......+++.|..-|.. |+.+..
T Consensus 11 ~YV~nmLivA~d~~f~~v~~~C~Atii~yHf~DF~ 45 (48)
T PF06887_consen 11 MYVCNMLIVAHDARFGNVQNCCIATIISYHFHDFI 45 (48)
T ss_pred HHHHhHheeeccccchHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888999999888773 665543
No 69
>KOG4441|consensus
Probab=22.04 E-value=1.6e+02 Score=29.61 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=29.8
Q ss_pred cCChHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Q psy10761 287 NLSIENAAEILILADLHSADQLKTQAIEFINT 318 (365)
Q Consensus 287 ~l~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~ 318 (365)
.++.+|+.+++..|..+++..+.+.|.+|+..
T Consensus 101 ~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~ 132 (571)
T KOG4441|consen 101 EISEDNVQELLEAASLLQIPEVVDACCEFLES 132 (571)
T ss_pred EechHhHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 46888999999999999999999999999985
No 70
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=21.04 E-value=1.3e+02 Score=23.02 Aligned_cols=38 Identities=11% Similarity=0.153 Sum_probs=30.5
Q ss_pred cHHHHHhhChHHHHHHHHHHhhcCCCCCCCCCcCCCCC
Q psy10761 328 GWKQMILSHPHLIAEAFRALATQQIPPIGPPRKRVKQS 365 (365)
Q Consensus 328 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~ 365 (365)
++.++....+.-+..+++++.+.++-...|++.|.+.|
T Consensus 24 elA~~l~cS~Rn~r~lLkkm~~~gWi~W~pg~GRG~~S 61 (115)
T PF12793_consen 24 ELAELLFCSRRNARTLLKKMQEEGWITWQPGRGRGNRS 61 (115)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCeeeeCCCCCCCCC
Confidence 33444445678889999999999999999999998876
No 71
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=20.72 E-value=3.6e+02 Score=20.00 Aligned_cols=54 Identities=19% Similarity=0.399 Sum_probs=36.4
Q ss_pred EEEEecC--eEEehhHHHHhccCHHHHHhcccccc---ccCCCeEEEccCCHHHHHHHhHhh
Q psy10761 193 VTLYSAG--QEFRAHKAILAAQSPVFMAMFEHEME---ERKHNRVDIADVDADVLREMLRFI 249 (365)
Q Consensus 193 v~i~~~~--~~~~~hk~iL~~~S~~F~~l~~~~~~---e~~~~~i~l~~~~~~~f~~~L~~i 249 (365)
+.+.|++ +.|-+....| ..|.|+.++...-. -...+.|.|+ .+...|+.+|..|
T Consensus 41 ~~VyVG~~~~Rfvvp~~~L--~hp~f~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 41 FAVYVGEERRRFVVPVSYL--NHPLFQELLEQAEEEFGFDQDGPLTIP-CDVVLFEHLLWLL 99 (100)
T ss_pred EEEEeCccceEEEechHHc--CchhHHHHHHHHhhhcCcCCCCcEEee-CCHHHHHHHHHHh
Confidence 4455544 6788888887 47899999854322 2234567776 7788888888764
No 72
>TIGR02425 decarb_PcaC 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus.
Probab=20.16 E-value=4.1e+02 Score=20.47 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=48.9
Q ss_pred EEccCCHHHHHHHhHhhccCCCC-----CcHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCc
Q psy10761 233 DIADVDADVLREMLRFIYTGRST-----SLDKMADDLLAAADKYALERLKVMCEEALCTNLSIENAAEILILADLHSA 305 (365)
Q Consensus 233 ~l~~~~~~~f~~~L~~iY~~~~~-----~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~~~l~~a~~~~~ 305 (365)
.+.+++|+-.+.+.+|+|++-.. .-...+..+-.+|-.=+.+.+......-|...++++.+.+++..+..|.-
T Consensus 27 ~~~~~~p~~~~~~~~~~fgdv~~r~~Ld~k~R~Litla~laa~g~~~~l~~h~~~Al~~G~T~~ei~Evl~q~~~y~G 104 (123)
T TIGR02425 27 ATTDFDQPFQELITEYAWGTVWTRPGLTKRERSLVTIALLAALGRDEELAMHVRATANTGVTEDDIKEVLLHVAIYAG 104 (123)
T ss_pred cccccCHHHHHHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 35678899888889999885432 22233344444444445567777777777777888888888777777643
Done!