RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10761
(365 letters)
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 405 bits (1043), Expect = e-142
Identities = 254/310 (81%), Positives = 282/310 (90%)
Query: 19 KVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLY 78
KVVKFSYMWTINNFSFCREEMGEV+KSSTFS+GANDKLKWCLRVNPKGLDEESKDYLSLY
Sbjct: 3 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLY 62
Query: 79 LLLVSCNKTEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELN 138
LLLVSC K+EVRAKFKFSILNAK EETKAMESQRAYRFVQGKDWGFKKFIRR FLLDE N
Sbjct: 63 LLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEAN 122
Query: 139 GLLPEDKLTIFCEVSVVADSVNISGQSNAAQFKVPDCRLADNLGALFEIQKFSDVTLYSA 198
GLLP+DKLT+FCEVSVV DSVNISGQ+ KVP+CRLAD LG L+E +F+D L A
Sbjct: 123 GLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVA 182
Query: 199 GQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTGRSTSLD 258
GQEF+AHKAILAA+SPVF AMFEHEMEE K NRV+I DV+ +V +EM+ FIYTG++ +LD
Sbjct: 183 GQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLD 242
Query: 259 KMADDLLAAADKYALERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINT 318
KMADDLLAAADKYALERLKVMCE+ALC+NLS+ENAAEILILADLHSADQLKTQA++FIN
Sbjct: 243 KMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINY 302
Query: 319 HATEVMDTVG 328
HAT+V++T G
Sbjct: 303 HATDVLETSG 312
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 242 bits (620), Expect = 2e-80
Identities = 121/171 (70%), Positives = 144/171 (84%)
Query: 158 SVNISGQSNAAQFKVPDCRLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFM 217
S GQ+ KVP+CRLAD LG L+E +F+D L AGQEF+AHKAILAA+SPVF
Sbjct: 2 SGGSGGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFS 61
Query: 218 AMFEHEMEERKHNRVDIADVDADVLREMLRFIYTGRSTSLDKMADDLLAAADKYALERLK 277
AMFEHEMEE K NRV+I DV+ +V +EM+ FIYTG++ +LDKMADDLLAAADKYALERLK
Sbjct: 62 AMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLK 121
Query: 278 VMCEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINTHATEVMDTVG 328
VMCE+ALC+NLS+ENAAEILILADLHSADQLKTQA++FIN HAT+V++T G
Sbjct: 122 VMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 172
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 216 bits (553), Expect = 1e-70
Identities = 107/141 (75%), Positives = 124/141 (87%)
Query: 170 FKVPDCRLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKH 229
KVP+CRLAD LG L+E +F+D L AGQEF+AHKAILAA+SPVF AMFEHEMEE K
Sbjct: 5 VKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKK 64
Query: 230 NRVDIADVDADVLREMLRFIYTGRSTSLDKMADDLLAAADKYALERLKVMCEEALCTNLS 289
NRV+I DV+ +V +EM+ FIYTG++ +LDKMADDLLAAADKYALERLKVMCE+ALC+NLS
Sbjct: 65 NRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLS 124
Query: 290 IENAAEILILADLHSADQLKT 310
+ENAAEILILADLHSADQLKT
Sbjct: 125 VENAAEILILADLHSADQLKT 145
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation
pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A
3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Length = 145
Score = 170 bits (431), Expect = 1e-52
Identities = 130/141 (92%), Positives = 135/141 (95%)
Query: 17 QVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLS 76
KVVKFSYMWTINNFSFCREEMGEV+KSSTFS+GANDKLKWCLRVNPKGLDEESKDYLS
Sbjct: 5 SGKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLS 64
Query: 77 LYLLLVSCNKTEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDE 136
LYLLLVSC K+EVRAKFKFSILNAK EETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDE
Sbjct: 65 LYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDE 124
Query: 137 LNGLLPEDKLTIFCEVSVVAD 157
NGLLP+DKLT+FCEVSVV D
Sbjct: 125 ANGLLPDDKLTLFCEVSVVQD 145
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 140 bits (356), Expect = 9e-42
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 183 ALFEIQKFSDVTL----YSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVD 238
++F + +DV A + AHK +LA S VF AMF ++ E K + + I DV+
Sbjct: 1 SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVE 59
Query: 239 ADVLREMLRFIYTGRSTSLDKMADDLLAAADKYALERLKVMCEEALCTNL 288
+L+++Y+ L AA KY + L C L T+L
Sbjct: 60 PAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKACVNFLETSL 109
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase;
1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A
3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Length = 155
Score = 122 bits (308), Expect = 4e-34
Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 11/140 (7%)
Query: 21 VKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEES-KDYLSLYL 79
+ ++ +T+ FS + E + S L W + V P+ + + + +L
Sbjct: 17 SEATFQFTVERFS----RLSESVLSPPCFVR---NLPWKIMVMPRFYPDRPHQKSVGFFL 69
Query: 80 LLVSCNKTE---VRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDE 136
+ + + A+ I+N + +E F + DWGF F+ + D
Sbjct: 70 QCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDP 129
Query: 137 LNGLLPEDKLTIFCEVSVVA 156
G + +DK+T V A
Sbjct: 130 EKGFIDDDKVTFEVFVQADA 149
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 121 bits (305), Expect = 2e-32
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 2/153 (1%)
Query: 176 RLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMF--EHEMEERKHNRVD 233
RL L + E +F D L G+E K ILAA SP ++ +++
Sbjct: 17 RLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIE 76
Query: 234 IADVDADVLREMLRFIYTGRSTSLDKMADDLLAAADKYALERLKVMCEEALCTNLSIENA 293
+ + V+RE+L +I++G+ + D++ AAD L LK +C E L ++ EN
Sbjct: 77 LEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENC 136
Query: 294 AEILILADLHSADQLKTQAIEFINTHATEVMDT 326
I A + + A E++ TH +V T
Sbjct: 137 IGIRDFALHYCLHHVHYLATEYLETHFRDVSST 169
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 118 bits (297), Expect = 4e-31
Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 9/157 (5%)
Query: 179 DNLGALFEIQKFSDVTLYSA---GQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIA 235
F D+TL G+EFRAH+++LAA + F + + E + RV++
Sbjct: 21 WRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMR 80
Query: 236 D------VDADVLREMLRFIYTGRSTSLDKMADDLLAAADKYALERLKVMCEEALCTNLS 289
+ D + ++ ++YTGR ++L AD++ L RLK C E L L
Sbjct: 81 KWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLH 140
Query: 290 IENAAEILILADLHSADQLKTQAIEFINTHATEVMDT 326
+ N I LA +++ QL +A + I + +V+
Sbjct: 141 LSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQD 177
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 88.8 bits (221), Expect = 6e-22
Identities = 26/95 (27%), Positives = 43/95 (45%)
Query: 188 QKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLR 247
DV + G+EF H+++LAA S F +F + N +I V A+ L ++
Sbjct: 23 GLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMD 82
Query: 248 FIYTGRSTSLDKMADDLLAAADKYALERLKVMCEE 282
F YT T D+L+AA + + +C +
Sbjct: 83 FAYTATLTVSTANVGDILSAARLLEIPAVSHVCAD 117
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 87.7 bits (218), Expect = 2e-21
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 165 SNAAQFKVPD--CRLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEH 222
S +Q + + NL L +DV + + ++FRAHK +L A S +F ++F
Sbjct: 2 SADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTD 61
Query: 223 EMEERKHNRVDIADVDADVLREMLRFIYTGRSTSLDKMADDLLAAADKYALERLKVMCEE 282
+++ +++ + +L F+YT R + ++A A +E + C +
Sbjct: 62 QLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRK 121
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 86.9 bits (216), Expect = 5e-21
Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 4/115 (3%)
Query: 189 KFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRF 248
++ D TL G F+AH ++LA S F ++ V + A++ +L F
Sbjct: 24 QYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGTGG----SVVLPAGFAEIFGLLLDF 79
Query: 249 IYTGRSTSLDKMADDLLAAADKYALERLKVMCEEALCTNLSIENAAEILILADLH 303
YTG D +L AA + + +C+ + + +
Sbjct: 80 FYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQAQSGLGQSGPSS 134
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 87.0 bits (216), Expect = 5e-21
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Query: 175 CRLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEH--EMEERKHNRV 232
RL L + E +F D L G+E K ILAA SP + ++ ++
Sbjct: 32 ARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKI 91
Query: 233 DIADVDADVLREMLRFIYTGRSTSLDKMADDLLAAADKYALERLKVMCEE 282
++ + V+RE+L +I++G+ + D++ AAD L LK +C E
Sbjct: 92 ELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCE 141
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling
protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A
1lb4_A
Length = 160
Score = 86.5 bits (214), Expect = 1e-20
Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 25/156 (16%)
Query: 24 SYMWTINNFSFCREEM----GEVLKSSTFSAGANDKLKWCLRVNPKGLD-EESKDYLSLY 78
Y+W I NF + V+ S F G K C+R++ + + +Y+SL+
Sbjct: 6 IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPG-YKLCMRLHLQLPTAQRCANYISLF 64
Query: 79 LLLVSCN-----KTEVRAKFKFSILN-----AKREETKAMES-------QRAYRFVQGKD 121
+ + + + +IL+ ++ + M++ QR K
Sbjct: 65 VHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKG 124
Query: 122 WGFKKFIRRDFLLDELNGLLPEDKLTIFCEVSVVAD 157
+G+ F+ + L + +D L + CEVS D
Sbjct: 125 FGYVTFMHLEAL--RQRTFIKDDTLLVRCEVSTRFD 158
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 84.2 bits (209), Expect = 4e-20
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 7/120 (5%)
Query: 169 QFKVPD--CRLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEE 226
Q + P L + DV + QEF AH+ +LA S +F +F +
Sbjct: 5 QLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQH 64
Query: 227 RKHNRVDIADVDADVLREMLRFIYTGRSTSLDKMADDLLAAADKYALERLKVMCEEALCT 286
+ + +++L + YT + + DDLL AA+ +E L+ C + L T
Sbjct: 65 -----YTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLET 119
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 83.4 bits (207), Expect = 8e-20
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 189 KFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRF 248
DVT++ GQ FRAH+++LAA S F + + + N +V +++F
Sbjct: 28 VLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVG-QADGELNITLPEEVTVKGFEPLIQF 86
Query: 249 IYTGRSTSLDKMADDLLAAADKYALERLKVMCEEAL 284
YT + + D++ + ++ ++ C + L
Sbjct: 87 AYTAKLILSKENVDEVCKCVEFLSVHNIEESCFQFL 122
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 82.7 bits (205), Expect = 1e-19
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 189 KFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRF 248
DVTL +EFRAH+A+LAA S F + + +V A +L+F
Sbjct: 31 ILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN-DLVVSLPEEVTARGFGPLLQF 89
Query: 249 IYTGRSTSLDKMADDLLAAADKYALERLKVMCEE 282
YT + + +++ A+ + L+ C
Sbjct: 90 AYTAKLLLSRENIREVIRCAEFLRMHNLEDSCFS 123
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 81.9 bits (203), Expect = 2e-19
Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 5/129 (3%)
Query: 163 GQSNAAQFKVPD--CRLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMF 220
G + Q ++P+ + + L + DV++ G F+AH+A+LAA S F +F
Sbjct: 4 GSAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLF 63
Query: 221 EHEMEERKHNRVDIADVDADVLREMLRFIYTGRSTSLDKMADDLLAAADKYALERLKVMC 280
+ A V +++L F YTGR + D L+ A ++ +
Sbjct: 64 NNSRSAVVE---LPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKG 120
Query: 281 EEALCTNLS 289
E S
Sbjct: 121 TEFFLKVSS 129
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 82.3 bits (204), Expect = 3e-19
Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 3/129 (2%)
Query: 162 SGQSNAAQFKVPD--CRLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAM 219
+S ++ + +L + DVT+ GQ FRAH+++LAA S F +
Sbjct: 6 VSESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSR 65
Query: 220 FEHEMEERKHNRVDIADVDADVLREMLRFIYTGRSTSLDKMADDLLAAADKYALERLKVM 279
+ + +V +++F YT + D++ + ++ ++
Sbjct: 66 IVG-QTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEES 124
Query: 280 CEEALCTNL 288
C + L
Sbjct: 125 CFQFLKFKF 133
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 80.7 bits (200), Expect = 6e-19
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 189 KFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRF 248
++ D TL G F+AH ++LA S F +++ V + A++ +L F
Sbjct: 23 QYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGSGG----SVVLPAGFAEIFGLLLDF 78
Query: 249 IYTGRSTSLDKMADDLLAAADKYALERLKVMCEE 282
YTG D +L AA + + +C+
Sbjct: 79 FYTGHLALTSGNRDQVLLAARELRVPEAVELCQS 112
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 79.9 bits (198), Expect = 1e-18
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 189 KFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRF 248
D T+ +F+AH+ +LA+ S F A++ E +D + V AD +++L F
Sbjct: 21 FLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVF--LDQSQVKADGFQKLLEF 78
Query: 249 IYTGRSTSLDKMADDLLAAADKYALERLKVMCEE 282
IYTG ++ AAD +E + C+
Sbjct: 79 IYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKI 112
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 78.9 bits (195), Expect = 2e-18
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 189 KFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRF 248
F DVT+ ++FRAHK IL+A S F +F + V+++ + A++ E+L +
Sbjct: 30 LFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVAGQV-----VELSFIRAEIFAEILNY 84
Query: 249 IYTGRSTSLDK-MADDLLAAAD 269
IY+ + + + D+L+ +
Sbjct: 85 IYSSKIVRVRSDLLDELIKSGQ 106
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 75.7 bits (187), Expect = 3e-17
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 189 KFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRF 248
D T G F+AHKA+LAA S F +F + + V + +A L ++L F
Sbjct: 26 LLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQKDV-----VHLDISNAAGLGQVLEF 80
Query: 249 IYTGRSTSLDKMADDLLAAADKYALERLKVMCEE 282
+YT + + + DD+LA A ++ + C
Sbjct: 81 MYTAKLSLSPENVDDVLAVATFLQMQDIITACHA 114
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 75.4 bits (186), Expect = 6e-17
Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 11/97 (11%)
Query: 189 KFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRF 248
D + QEF AH +LA S + + E + ++L F
Sbjct: 29 ALCDTLITVGSQEFPAHSLVLAGVSQQLGRRGQWALGE---------GISPSTFAQLLNF 79
Query: 249 IYTGR-STSLDKMADDLLAAADKYALERLKVMCEEAL 284
+Y + L AA ++ L+ C A
Sbjct: 80 VYGESVELQPGE-LRPLQEAARALGVQSLEEACWRAR 115
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich,
protein-peptide complex, apoptosis; 2.00A {Homo sapiens}
SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A
1d01_A 1d0a_A
Length = 168
Score = 73.9 bits (181), Expect = 5e-16
Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 19/148 (12%)
Query: 24 SYMWTINNFSFCREEM----GEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYL 79
++W I++F+ R+E + S F K CLR+ G +LSL+
Sbjct: 20 VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYG-YKMCLRIYLNGDGTGRGTHLSLFF 78
Query: 80 LLVSCNKTE-----VRAKFKFSILN--AKREETKAMESQRAYRFVQ------GKDWGFKK 126
+++ K +L+ + A Q G
Sbjct: 79 VVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPL 138
Query: 127 FIRRDFLLDELNGLLPEDKLTIFCEVSV 154
F ++ N + +D + I V +
Sbjct: 139 FCPVS-KMEAKNSYVRDDAIFIKAIVDL 165
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling,
TRAF, adapter protein, cell surviVal; 2.30A {Homo
sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Length = 192
Score = 72.3 bits (177), Expect = 3e-15
Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 19/148 (12%)
Query: 24 SYMWTINNFSFCREEM----GEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYL 79
++W I++F+ R+E + S F K CLR+ G +LSL+
Sbjct: 44 VFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYG-YKMCLRIYLNGDGTGRGTHLSLFF 102
Query: 80 LLVSCNKTE-----VRAKFKFSILN--AKREETKAMESQRAYRFVQ------GKDWGFKK 126
+++ K +L+ + A Q G
Sbjct: 103 VVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPL 162
Query: 127 FIRRDFLLDELNGLLPEDKLTIFCEVSV 154
F + + N + +D + I V +
Sbjct: 163 FCPVSKMEAK-NSYVRDDAIFIKAIVDL 189
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF
receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB:
1kzz_A 1l0a_A 1zms_A 1rf3_A
Length = 192
Score = 67.3 bits (164), Expect = 2e-13
Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 21/149 (14%)
Query: 24 SYMWTINNFSFCREEM----GEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYL 79
+W I ++ ++E L S F G K C RV G +LSL+
Sbjct: 41 VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFG-YKMCARVYLNGDGMGKGTHLSLFF 99
Query: 80 LLVS-----CNKTEVRAKFKFSILNAKREETKAMESQRAYRFVQ---------GKDWGFK 125
+++ + K +++ ++ + G
Sbjct: 100 VIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCP 159
Query: 126 KFIRRDFLLDELNGLLPEDKLTIFCEVSV 154
F+ + L E + +D + I V
Sbjct: 160 VFVAQTVL--ENGTYIKDDTIFIKVIVDT 186
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3,
CD40-binding protein, apoptosis; 2.80A {Homo sapiens}
SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Length = 228
Score = 64.7 bits (157), Expect = 2e-12
Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 21/149 (14%)
Query: 24 SYMWTINNFSFCREEM----GEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYL 79
+W I ++ ++E L S F G K C RV G +LSL+
Sbjct: 77 VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFG-YKMCARVYLNGDGMGKGTHLSLFF 135
Query: 80 LLV-----SCNKTEVRAKFKFSILN---AKREETKAMESQRAYRFVQ------GKDWGFK 125
+++ + + K +++ ++R A + + G
Sbjct: 136 VIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCP 195
Query: 126 KFIRRDFLLDELNGLLPEDKLTIFCEVSV 154
F+ + L E + +D + I V
Sbjct: 196 VFVAQTVL--ENGTYIKDDTIFIKVIVDT 222
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.2 bits (150), Expect = 1e-10
Identities = 53/389 (13%), Positives = 102/389 (26%), Gaps = 124/389 (31%)
Query: 27 WTINNFSF-CREEMGEVL-----KSSTFSAGANDKLKWCLRVNPKGLDE-ESKDYLSLYL 79
N F+ C+ +L K T A L + L E K L YL
Sbjct: 257 KAWNAFNLSCK-----ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 80 LLVSCNKTEVRAK------FKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFL 133
C ++ + + SI+ + A + I
Sbjct: 312 ---DCRPQDLPREVLTTNPRRLSIIAESIRDGLA----TWDNWKHVNCDKLTTIIESS-- 362
Query: 134 LDELNGLLPEDKLTIFCEVSVVADSVNISGQ----------SNAAQFKVPDCRLADNLGA 183
LN L P + +F +SV S +I + V
Sbjct: 363 ---LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH---KYSL 416
Query: 184 LFEIQKFSDVTLYSAGQEFRA--------HKAILAA-------------QSPVFMAMFEH 222
+ + K S +++ S E + H++I+ + + H
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 223 --------EMEERKHNRVDIADVDADVLREM---LRFI-----YTGRSTSLDKMADDLLA 266
E ER + R + RF+ + + + + L
Sbjct: 477 IGHHLKNIEHPER-----------MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 267 AADKYALERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINTHATEV--- 323
Y + +C N + E L+ + ++F+ +
Sbjct: 526 QLKFY---------KPYICDN---DPKYERLV-NAI----------LDFLPKIEENLICS 562
Query: 324 --MDTVGWKQMILSHPH--LIAEAFRALA 348
D + ++ L + EA + +
Sbjct: 563 KYTDLL---RIALMAEDEAIFEEAHKQVQ 588
Score = 45.6 bits (107), Expect = 2e-05
Identities = 62/381 (16%), Positives = 116/381 (30%), Gaps = 101/381 (26%)
Query: 13 LFWL----QVKVVK-F-------SYMWTINNFSF-CRE-EMGEVLKSSTFSAGAND---- 54
LFW Q ++V+ F +Y + ++ R+ M + ND
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 55 --------KLKWCLRVNPKGLDE-ESKDYLSLY---------LLLVSCNKTEVRAKFKFS 96
+ LR + L E + + + L C +V+ K F
Sbjct: 127 AKYNVSRLQPYLKLR---QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 97 I--LNAKREET--------KAMESQRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKL 146
I LN K + + + Q + D +R + EL LL K
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL---KS 240
Query: 147 TIFCEVSVVADSVNISGQSNAAQFKVPDCR---------LADNLGALFEIQKFSDVTLYS 197
+ +V +V + NA F + C+ + D L A D +S
Sbjct: 241 KPYENCLLVLLNVQNAKAWNA--FNL-SCKILLTTRFKQVTDFLSAATTTHISLD--HHS 295
Query: 198 AGQEFRAHKAILA---------------AQSPVFMAMFEHEMEERKHNRVD-IADVDADV 241
K++L +P +++ + + D V+ D
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL-ATWDNWKHVNCDK 354
Query: 242 LREMLRFIYTGRSTSLDKMADDLLAAADKYALERLKVMCEEALCTN--LSI-----ENAA 294
L ++ +SL+ + + +RL V A LS+ +
Sbjct: 355 LTTII-------ESSLNVLEPAEY----RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 295 EILILADLHSADQLKTQAIEF 315
++++ LH ++ Q E
Sbjct: 404 VMVVVNKLHKYSLVEKQPKES 424
Score = 29.1 bits (64), Expect = 2.8
Identities = 21/155 (13%), Positives = 50/155 (32%), Gaps = 34/155 (21%)
Query: 221 EHEMEERKHNRVDI---------ADVDADVLREMLRFIYTGRSTSLDKMADDLLAAADKY 271
+ E E ++ DI + D +++M + I + + D ++ + D
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS------KEEIDHIIMSKD-- 59
Query: 272 ALERLKVMCEEALCTNLSIENAAEILILADLHS-----ADQLKTQAIE-------FINTH 319
A+ + L + E + + L +KT+ + +I
Sbjct: 60 AVSGTLRLF-WTLLSKQ--EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 320 ATEVMDTVGWKQMILSHPHLIAEAFRALATQQIPP 354
D + + +S + +AL ++ P
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQAL--LELRP 149
Score = 27.5 bits (60), Expect = 8.9
Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 10/74 (13%)
Query: 15 WLQVKVVKFSYMW--------TINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKG 66
+L+ K+ S W T+ F + + + + N L + ++
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD--NDPKYERLVNAILDFLPKIEENL 559
Query: 67 LDEESKDYLSLYLL 80
+ + D L + L+
Sbjct: 560 ICSKYTDLLRIALM 573
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
deubiquitinating enzyme, substrate recognition; 3.20A
{Homo sapiens}
Length = 522
Score = 53.4 bits (128), Expect = 5e-08
Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 13/139 (9%)
Query: 24 SYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDE-ESKDYLSLYLLLV 82
++ +T+ FS + E + S L W + V P+ + + + +L
Sbjct: 32 TFQFTVERFS----RLSESVLSPPCFVR---NLPWKIMVMPRFYPDRPHQKSVGFFLQCN 84
Query: 83 SCNKTE---VRAKFKFSILNAKREETKAMESQRAYRF-VQGKDWGFKKFIRRDFLLDELN 138
+ + + A+ I+N + ++ K+ + ++ F + DWGF F+ + D
Sbjct: 85 AESDSTSWSCHAQAVLKIINYR-DDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEK 143
Query: 139 GLLPEDKLTIFCEVSVVAD 157
G + +DK+T V A
Sbjct: 144 GFIDDDKVTFEVFVQADAP 162
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 3e-06
Identities = 44/309 (14%), Positives = 86/309 (27%), Gaps = 130/309 (42%)
Query: 90 RAKFKFSILNAKREETKAM-------ESQR------AYRFVQGKDWGFKKFIRRDFLLDE 136
+ + FSIL+ + + +R A F D ++ + + E
Sbjct: 1654 KDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVD----GKLKTEKIFKE 1709
Query: 137 LNGLL-------PEDKL--TIFCEVSVVADSVNISGQSNAAQFKV--------PDCRLAD 179
+N + L T F + ++ A F+ D A
Sbjct: 1710 INEHSTSYTFRSEKGLLSATQFTQPALTLMEK--------AAFEDLKSKGLIPADATFA- 1760
Query: 180 N---LGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIAD 236
LG E Y+A LA+ + V I
Sbjct: 1761 -GHSLG---E---------YAA----------LASLADVM----------------SIES 1781
Query: 237 VDADVLREMLR--FIYT-------GRSTSLDKMADDLLAAADKYALERLKVMCEEA---- 283
+ +V+ R + GRS + +A + A ++ E L+ + E
Sbjct: 1782 L-VEVVF--YRGMTMQVAVPRDELGRS-NYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 284 --LCT----NLS------------IENAAEILILADLHSADQLKTQAIEFINTHATEVMD 325
L N+ ++ +L + +K Q I+ I + ++
Sbjct: 1838 GWLVEIVNYNVENQQYVAAGDLRALDTVTNVL--------NFIKLQKIDIIELQKSLSLE 1889
Query: 326 TVGWKQMIL 334
V + +
Sbjct: 1890 EV--EGHLF 1896
Score = 43.1 bits (101), Expect = 1e-04
Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 53/168 (31%)
Query: 164 QSNAAQ--FKVPDCRLADNLGALFEIQKF-----SDVTLYSAGQEFRAHKAILAAQSPVF 216
S AAQ + D D G F I ++T++ G++ + + +
Sbjct: 1638 TSKAAQDVWNRADNHFKDTYG--FSILDIVINNPVNLTIHFGGEKGKRIREN-------Y 1688
Query: 217 MAM-FEHEMEERKHNRVDIADVDADVLREMLRFIYTGRSTSLDKM-----ADDLLAAADK 270
AM FE ++ + + ++ + + L A L
Sbjct: 1689 SAMIFETIVDGKLKTE----KIFKEINEHSTSYTFRSEKGLLSATQFTQPA--LTLME-- 1740
Query: 271 YALERLKVMCEE------------------ALCTN---LSIENAAEIL 297
A + + + AL + +SIE+ E++
Sbjct: 1741 KAA--FEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV 1786
Score = 39.3 bits (91), Expect = 0.002
Identities = 53/342 (15%), Positives = 102/342 (29%), Gaps = 128/342 (37%)
Query: 25 YMWTINNFSFCREEMGEVLKSST----------FSAGANDKLKWCLRVNPKGLDEESKDY 74
Y+ T F E+ LK +T A + W + +
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS---W------ESFFVSVRKA 299
Query: 75 LSLYLLL-VSCNKTEVRAKFKFSIL--NAKREETKA--MESQRAYRFVQGKDWGFKKFIR 129
+++ + V C + SIL + + E M S + +
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS------ISN--------LT 345
Query: 130 RDFL---LDELNGLLPEDKLTIFCEVSVV--ADSVNISG--QSNAAQFKVPDCRLADNLG 182
++ + +++ N LP K + E+S+V A ++ +SG QS
Sbjct: 346 QEQVQDYVNKTNSHLPAGK-QV--EISLVNGAKNLVVSGPPQS----------------- 385
Query: 183 ALFEIQKFSDVTLYSAGQEFRAHKAILAA-QSPVFMAMFEHEMEERKHNRVDIADVDADV 241
LY R KA QS + ERK
Sbjct: 386 ------------LYGLNLTLRKAKAPSGLDQSRI-------PFSERK------------- 413
Query: 242 LREMLRFI---------YTGRSTSLDKMADDLLAAADKYALERLK--VMCEEALCT---- 286
L+ RF+ ++ D + DL+ + + ++ V T
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPAS--DLINKDLVKNNVSFNAKDIQIPV-----YDTFDGS 466
Query: 287 NLSIENAAEILILADLHSADQLKTQAIEF---INTHATEVMD 325
+L + + + I + D + +++ AT ++D
Sbjct: 467 DLRVLSGS---ISERI--VDCIIRLPVKWETTTQFKATHILD 503
Score = 34.3 bits (78), Expect = 0.066
Identities = 36/222 (16%), Positives = 71/222 (31%), Gaps = 80/222 (36%)
Query: 2 FLLTYALIHHVLFW-------------LQVKVVKFSYMWTINNFSFCREEMGEVLKSSTF 48
F ++ VLF+ L +++ S E E + S
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS------------LENNEGVPSPML 339
Query: 49 S-AGANDK--LKWCLRVNPKGLDEESKDYLSLY------------LLLVSCNKTEVRAKF 93
S + + + + N L + +SL L N +R K
Sbjct: 340 SISNLTQEQVQDYVNKTN-SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN-LTLR-KA 396
Query: 94 KFSILNAKREETKAMESQRAYRFVQGKDWGFKKF--IRRDF---LLDELNGLLPEDKLTI 148
K + ++++ S+R +F +F + F LL + L+ +D
Sbjct: 397 KAP---SGLDQSRIPFSERKLKFS-------NRFLPVASPFHSHLLVPASDLINKD---- 442
Query: 149 FCEVSVVADSVNISGQSNAAQFKVP--------DCR-LADNL 181
+V ++V+ NA ++P D R L+ ++
Sbjct: 443 -----LVKNNVSF----NAKDIQIPVYDTFDGSDLRVLSGSI 475
Score = 28.5 bits (63), Expect = 5.1
Identities = 19/136 (13%), Positives = 36/136 (26%), Gaps = 38/136 (27%)
Query: 239 ADVLREMLRFIYTGRSTSLDKMADD--------LLA-----AADKYALERLKVMCEEALC 285
A L+E +F + A D L+ + ++ ++ L
Sbjct: 30 ASQLQE--QFNKI-LPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQF-DQVLN 85
Query: 286 TNLSIENAAEILILA--DLHSADQLKTQAIEFINTHATEVMDTVGWKQMILSHPHLIAEA 343
L E L D+H+ A + + + T ++ LI
Sbjct: 86 LCL---TEFENCYLEGNDIHAL------AAKLLQENDTT----------LVKTKELIKNY 126
Query: 344 FRALATQQIPPIGPPR 359
A + P
Sbjct: 127 ITARIMAKRPFDKKSN 142
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 105
Score = 35.7 bits (83), Expect = 0.004
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 286 TNLSIENAAEILILADLHSADQLKTQAIEFINTHATEVMDT 326
+ + + N +++ LAD HS +L T A TH ++ +T
Sbjct: 6 SGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNT 46
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 32.9 bits (75), Expect = 0.19
Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 28/128 (21%)
Query: 253 RSTSLDKM-ADDLLAAADKYALERLKV-------MCEE--ALCTNLSIENAAEILILADL 302
R T L M A++++A +E++ V M L T +E + ++ADL
Sbjct: 674 RGTGL--MSANNIIAEG----IEKMGVRTFSQKEMAFNLLGLLTPEVVELCQKSPVMADL 727
Query: 303 ----HSADQLKTQAIEFINTHATEVMDTVGWKQMI---LSHPHLIAEAFRALATQQIPPI 355
+LK EF E+++T ++ + + H + A A I
Sbjct: 728 NGGLQFVPELK----EFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEI 783
Query: 356 GPPRKRVK 363
PR ++
Sbjct: 784 -QPRANIQ 790
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.1
Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 4/23 (17%)
Query: 273 LE-RLKVMCEE---ALCTNLSIE 291
L+ LK+ ++ AL ++E
Sbjct: 25 LQASLKLYADDSAPALAIKATME 47
>3iz5_I 60S ribosomal protein L10 (L10E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_I 1s1i_I 3jyw_I
Length = 224
Score = 29.3 bits (65), Expect = 1.6
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 15/44 (34%)
Query: 90 RAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFL 133
RAKFKF + + + WGF KF R +++
Sbjct: 154 RAKFKFPG---------------RQKIIHSRKWGFTKFTREEYV 182
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle,
tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB:
3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I
Length = 219
Score = 29.3 bits (65), Expect = 1.8
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 15/44 (34%)
Query: 90 RAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFL 133
RA++KF + + K WGF R ++L
Sbjct: 152 RARYKFPG---------------QQKIILSKKWGFTNLDRPEYL 180
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 214
Score = 28.9 bits (64), Expect = 2.0
Identities = 13/44 (29%), Positives = 15/44 (34%), Gaps = 15/44 (34%)
Query: 90 RAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFL 133
RAKFKF + K WGF KF +F
Sbjct: 154 RAKFKFPG---------------RQKIHISKKWGFTKFNADEFE 182
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1
Length = 151
Score = 28.1 bits (62), Expect = 2.6
Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 15/43 (34%)
Query: 90 RAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDF 132
RAKFKF + K WGF KF +F
Sbjct: 123 RAKFKFPG---------------RQKIHISKKWGFTKFNADEF 150
>3n5w_A Nitric oxide synthase; heme enzyme, substrate inhibitor, Zn
oxidoreductase, oxidoreductase-oxidoreductase inhibitor
COM; HET: HEM XFJ; 1.73A {Rattus norvegicus} PDB:
2hx3_A* 2hx4_A* 3b3m_A* 3b3n_A* 3b3o_A* 3b3p_A* 3hsn_A*
3hso_A* 3hsp_A* 3jt3_A* 3jt4_A* 3jt5_A* 3jt6_A* 3jt7_A*
3jt8_A* 3jt9_A* 3jta_A* 3n2r_A* 3n5v_A* 1om4_A* ...
Length = 422
Score = 28.7 bits (64), Expect = 3.3
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 280 CEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINTHATE 322
C E +C + + D+ + DQL A EF++ + +
Sbjct: 30 CTEHICMGSIMLPSQHTRKPEDVRTKDQLFPLAKEFLDQYYSS 72
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A
{Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1
PDB: 1ord_A*
Length = 730
Score = 28.5 bits (63), Expect = 3.8
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 12/58 (20%)
Query: 214 PVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTGRSTSLDKMADDLLAAADKY 271
PVF + + + AD L+++ I A ++ A + Y
Sbjct: 57 PVFAVTKDAQ------------AISADELKKIFHIIDLENKFDATVNAREIETAVNNY 102
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation,
nucleotide-binding, hydrolase, RNA-binding, ATP-binding,
DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Length = 185
Score = 27.9 bits (63), Expect = 4.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 129 RRDFLLDELNGLLPEDKLTIFCEVSVVADSV 159
+R FLLD LN + +F E ADS+
Sbjct: 32 KRSFLLDLLNATGKDSLTLVFVETKKGADSL 62
>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_H 4a1c_H 4a1e_H
Length = 215
Score = 27.7 bits (61), Expect = 5.4
Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 15/44 (34%)
Query: 90 RAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFL 133
RAK KF + V + WGF K R +
Sbjct: 154 RAKAKFPG---------------RQKVVTSQKWGFTKLTRAQYS 182
>1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase,
polyketide, tailoring enzyme, structural proteomics in
europe, spine; HET: AKT 1PE; 1.45A {Streptomyces
purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A*
Length = 298
Score = 27.9 bits (62), Expect = 5.8
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 9/34 (26%)
Query: 251 TGRST---------SLDKMADDLLAAADKYALER 275
TGRST ++A D +A D + ++R
Sbjct: 62 TGRSTTRDFAAHPYGFGELAADAVAVLDGWGVDR 95
>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM
barrel, riken S genomics/proteomics initiative, RSGI,
structural genomics,; 2.00A {Aeropyrum pernix} SCOP:
c.1.10.1
Length = 234
Score = 27.6 bits (62), Expect = 5.8
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 258 DKMADDLLAAADKYALERLKVMCEEALCTNLSIENAAEILILADLHSADQLKT 310
+++ + A A+ +KV+ E L + ++ + A AD +KT
Sbjct: 120 REVSGIVKLAKSYGAV--VKVILEAPLWDDKTLSLLVDSSRRAG---ADIVKT 167
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC,
structural GE consortium, hydrolase; HET: AMP; 2.20A
{Homo sapiens}
Length = 417
Score = 27.5 bits (62), Expect = 8.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 130 RDFLLDELNGLLPEDKLTIFCEVSVVADSV 159
R FLLD LN + +F E ADS+
Sbjct: 263 RSFLLDLLNATGKDSLTLVFVETKKGADSL 292
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.134 0.393
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,564,678
Number of extensions: 332067
Number of successful extensions: 942
Number of sequences better than 10.0: 1
Number of HSP's gapped: 892
Number of HSP's successfully gapped: 55
Length of query: 365
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 270
Effective length of database: 4,049,298
Effective search space: 1093310460
Effective search space used: 1093310460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.0 bits)