RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10761
(365 letters)
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 146
Score = 164 bits (416), Expect = 1e-50
Identities = 137/146 (93%), Positives = 142/146 (97%)
Query: 19 KVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLY 78
KVVKFSYMWTINNFSFCREEMGEV+KSSTFS+GANDKLKWCLRVNPKGLDEESKDYLSLY
Sbjct: 1 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLY 60
Query: 79 LLLVSCNKTEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELN 138
LLLVSC K+EVRAKFKFSILNAK EETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDE N
Sbjct: 61 LLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEAN 120
Query: 139 GLLPEDKLTIFCEVSVVADSVNISGQ 164
GLLP+DKLT+FCEVSVV DSVNISGQ
Sbjct: 121 GLLPDDKLTLFCEVSVVQDSVNISGQ 146
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2
(TRAF2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 152
Score = 93.3 bits (231), Expect = 1e-23
Identities = 24/149 (16%), Positives = 47/149 (31%), Gaps = 19/149 (12%)
Query: 24 SYMWTINNFSFCREEM----GEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYL 79
++W I++F R+E + S F K CLR+ G +LSL+
Sbjct: 4 VFIWKISDFPRKRQEAVAGRIPAIFSPAFYTS-RYGYKMCLRIYLNGDGTGRGTHLSLFF 62
Query: 80 LLV-----SCNKTEVRAKFKFSILNAKREETKAMESQRAYR--------FVQGKDWGFKK 126
+++ + + K +L+ E + G
Sbjct: 63 VVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPL 122
Query: 127 FIRRDFLLDELNGLLPEDKLTIFCEVSVV 155
F ++ N + +D + I V +
Sbjct: 123 FCPVS-KMEAKNSYVRDDAIFIKAIVDLT 150
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 91.3 bits (226), Expect = 3e-23
Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 168 AQFKVPD--CRLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEME 225
+Q + + NL L +DV + + ++FRAHK +L A S +F ++F +++
Sbjct: 1 SQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLK 60
Query: 226 ERKHNRVDIADVDADVLREMLRFIYTGRSTSLDKMADDLLAAADKYALERLKVMCEEALC 285
+++ + +L F+YT R + ++A A +E + C + +
Sbjct: 61 RNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIK 120
Query: 286 TN 287
+
Sbjct: 121 AS 122
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3
(TRAF3) {Human (Homo sapiens) [TaxId: 9606]}
Length = 155
Score = 91.8 bits (227), Expect = 6e-23
Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 21/149 (14%)
Query: 24 SYMWTINNFSFCREEM----GEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYL 79
+W I ++ ++E L S F G K C RV G +LSL+
Sbjct: 4 VLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTG-YFGYKMCARVYLNGDGMGKGTHLSLFF 62
Query: 80 LLVSCNKTE-----VRAKFKFSILNAKREETKAMESQRAYRFVQGKD---------WGFK 125
+++ + K +++ ++ + G
Sbjct: 63 VIMRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCP 122
Query: 126 KFIRRDFLLDELNGLLPEDKLTIFCEVSV 154
F+ + L + + +D + I V
Sbjct: 123 VFVAQTVLEN--GTYIKDDTIFIKVIVDT 149
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 155
Score = 88.7 bits (219), Expect = 7e-22
Identities = 29/152 (19%), Positives = 54/152 (35%), Gaps = 25/152 (16%)
Query: 24 SYMWTINNFSFCREEM----GEVLKSSTFSAGANDKLKWCLRVNPKGLD-EESKDYLSLY 78
Y+W I NF + V+ S F G K C+R++ + + +Y+SL+
Sbjct: 6 IYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTG-KPGYKLCMRLHLQLPTAQRCANYISLF 64
Query: 79 LLLVSCN-----KTEVRAKFKFSILNAKREETKAMES------------QRAYRFVQGKD 121
+ + + + +IL+ + QR K
Sbjct: 65 VHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKG 124
Query: 122 WGFKKFIRRDFLLDELNGLLPEDKLTIFCEVS 153
+G+ F+ + L + +D L + CEVS
Sbjct: 125 FGYVTFMHLEALRQ--RTFIKDDTLLVRCEVS 154
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 87.0 bits (215), Expect = 1e-21
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 169 QFKVPD--CRLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEE 226
Q + P L + DV + QEF AH+ +LA S +F +F
Sbjct: 5 QLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHR---- 60
Query: 227 RKHNRVDIADVDADVLREMLRFIYTGRSTSLDKMADDLLAAADKYALERLKVMCEEAL 284
+ + +++L + YT + + DDLL AA+ +E L+ C + L
Sbjct: 61 -NSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKML 117
>d2ef1a1 c.23.14.3 (A:45-291) ADP ribosyl cyclase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 247
Score = 27.5 bits (61), Expect = 2.2
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 9/60 (15%)
Query: 12 VLFWLQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEES 71
+L W ++K + + + F E+ T D L WC N ++ +S
Sbjct: 78 ILLWSRIKDLAHQFTQVQRDM-FTLED--------TLLGYLADDLTWCGEFNTSKINYQS 128
>d1isia_ c.23.14.3 (A:) Bone marror stromal cell antigen 1,
BST-1/CD157 (ADP ribosyl cyclase-2) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 250
Score = 27.5 bits (61), Expect = 2.6
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 9/59 (15%)
Query: 13 LFWLQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEES 71
LFW ++ S+ F L S D L WC + GLD +S
Sbjct: 74 LFWENSHLLVNSFADNTRRF--------MPL-SDVLYGRVADFLSWCRQKADSGLDYQS 123
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]}
Length = 263
Score = 27.2 bits (59), Expect = 2.7
Identities = 10/78 (12%), Positives = 22/78 (28%)
Query: 173 PDCRLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRV 232
D + N+ LFE ++ S F + + + + E+ +
Sbjct: 103 ADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGG 162
Query: 233 DIADVDADVLREMLRFIY 250
D ++ I
Sbjct: 163 DQGLLNTFFNSWATTDIR 180
>d1oaoa_ e.26.1.2 (A:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 673
Score = 26.7 bits (59), Expect = 4.8
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 10/59 (16%)
Query: 235 ADVDADVLREMLRFIYTGRSTSLD---KMADDLLAAADKYAL-------ERLKVMCEEA 283
A V R + I TG + + +A L+ A+ A +LK +C
Sbjct: 91 ASAWTIVARNVGLMILTGAAAHCEHGNHIAHALVEMAEGKAPDYSVKDEAKLKEVCRRV 149
>d2de6a2 d.129.3.3 (A:143-384) Terminal oxygenase component of
carbazole CarAa {Janthinobacterium sp. j3 [TaxId:
213804]}
Length = 242
Score = 25.9 bits (57), Expect = 6.6
Identities = 13/49 (26%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 319 HATEVM-----DTVGWKQMILSHPHLIAEAFRALATQQIPPIGPPRKRV 362
A E M D GW IL A+R LA++ I
Sbjct: 193 WAREAMVDFYADDKGWVNEILFESDEAIVAWRKLASEHNQGIQTQAHVS 241
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.134 0.393
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,313,099
Number of extensions: 58683
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 14
Length of query: 365
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 278
Effective length of database: 1,213,086
Effective search space: 337237908
Effective search space used: 337237908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.4 bits)