BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10762
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 80/119 (67%)
Query: 3 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGE 62
HTGE P++C C K+F+++ +L H R HTGE P+ C C KSF++ H+ H+R HTGE
Sbjct: 72 HTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGE 131
Query: 63 TPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTVRRVN 121
P+ C C K+F+R+D+L H R HTGE P+KC C KSF+R++ L H R HT ++ +
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKTS 190
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 78/122 (63%)
Query: 3 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGE 62
HTGE P++C C K+F+ K+ L H R HTGE P+ C C KSF+++ ++ H+R HTGE
Sbjct: 44 HTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGE 103
Query: 63 TPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTVRRVND 122
P+ C C K+F++ HL H R HTGE P+KC C KSF+R+++L H R HT +
Sbjct: 104 KPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYK 163
Query: 123 LP 124
P
Sbjct: 164 CP 165
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 72/120 (60%)
Query: 5 GETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
GE P+ C C K+F+R +HL H R HTGE P+ C C KSF+ K + H+R HTGE P
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 65 FPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTVRRVNDLP 124
+ C C K+F+++ +L H R HTGE P+ C C KSF++ HL H R HT + P
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
Query: 8 PHRCDY--CAKTFTRKEHLVNHVRQHTGESPHHCNY--CAKSFTRKDHMVYHERQHTGET 63
P C Y C K + + HL H R+HTGE P+ C++ C + F+R D + H+R+HTG
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEHLTNH 111
PF C+ C + F+R DHL H R HTGE P C + C K F R + L H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 3 HTGETPHRCDY--CAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHT 60
HTGE P++CD+ C + F+R + L H R+HTG P C C + F+R DH+ H R HT
Sbjct: 31 HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHT 90
Query: 61 GETPFPCQY--CPKAFTRKDHLVNH 83
GE PF C++ C K F R D LV H
Sbjct: 91 GEKPFSCRWPSCQKKFARSDELVRH 115
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 36 PHHCNY--CAKSFTRKDHMVYHERQHTGETPFPCQY--CPKAFTRKDHLVNHVRRHTGES 91
P C Y C K + + H+ H R+HTGE P+ C + C + F+R D L H RRHTG
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 92 PHKCTYCMKSFTRKEHLTNHIRQHT 116
P +C C + F+R +HL H R HT
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTHT 90
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 3 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNY--CAKSFTRKDHMVYHERQH 59
HTG P +C C + F+R +HL H R HTGE P C + C K F R D +V H H
Sbjct: 61 HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 90
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Query: 9 HRCDY--CAKTFTRKEHLVNHVRQHTGESPHHCNY--CAKSFTRKDHMVYHERQHTGETP 64
H CDY C KT+T+ HL H+R HTGE P+HC++ C F R D + H R+HTG P
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 65 FPCQYCPKAFTRKDHLVNHVRRH 87
F CQ C +AF+R DHL H++RH
Sbjct: 67 FQCQKCDRAFSRSDHLALHMKRH 89
Score = 69.7 bits (169), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 35 SPHHCNY--CAKSFTRKDHMVYHERQHTGETPFPCQY--CPKAFTRKDHLVNHVRRHTGE 90
+ H C+Y C K++T+ H+ H R HTGE P+ C + C F R D L H R+HTG
Sbjct: 5 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 64
Query: 91 SPHKCTYCMKSFTRKEHLTNHIRQH 115
P +C C ++F+R +HL H+++H
Sbjct: 65 RPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 3 HTGETPHRCDY--CAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQH 59
HTGE P+ CD+ C F R + L H R+HTG P C C ++F+R DH+ H ++H
Sbjct: 31 HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 67 CQY--CPKAFTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEHLTNHIRQHTVRR 119
C Y C K +T+ HL H+R HTGE P+ C + C F R + LT H R+HT R
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR 65
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 91 SPHKCTY--CMKSFTRKEHLTNHIRQHT 116
+ H C Y C K++T+ HL H+R HT
Sbjct: 5 ATHTCDYAGCGKTYTKSSHLKAHLRTHT 32
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 89
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Query: 9 HRCDY--CAKTFTRKEHLVNHVRQHTGESPHHCNY--CAKSFTRKDHMVYHERQHTGETP 64
H CDY C KT+T+ HL H+R HTGE P+HC++ C F R D + H R+HTG P
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 65 FPCQYCPKAFTRKDHLVNHVRRH 87
F CQ C +AF+R DHL H++RH
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRH 88
Score = 69.7 bits (169), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 35 SPHHCNY--CAKSFTRKDHMVYHERQHTGETPFPCQY--CPKAFTRKDHLVNHVRRHTGE 90
+ H C+Y C K++T+ H+ H R HTGE P+ C + C F R D L H R+HTG
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 91 SPHKCTYCMKSFTRKEHLTNHIRQH 115
P +C C ++F+R +HL H+++H
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 3 HTGETPHRCDY--CAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQH 59
HTGE P+ CD+ C F R + L H R+HTG P C C ++F+R DH+ H ++H
Sbjct: 30 HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 67 CQY--CPKAFTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEHLTNHIRQHTVRR 119
C Y C K +T+ HL H+R HTGE P+ C + C F R + LT H R+HT R
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR 64
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 91 SPHKCTY--CMKSFTRKEHLTNHIRQHT 116
+ H C Y C K++T+ HL H+R HT
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHT 31
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 51/82 (62%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPF 65
E P++C C K+F++ +L H R HTGE P+ C C KSF++ + H+R HTGE P+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 66 PCQYCPKAFTRKDHLVNHVRRH 87
C C K+F+R DHL H R H
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTH 83
Score = 82.0 bits (201), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 54/86 (62%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPH 93
E P+ C C KSF++ ++ H+R HTGE P+ C C K+F++ L H R HTGE P+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 94 KCTYCMKSFTRKEHLTNHIRQHTVRR 119
KC C KSF+R +HL+ H R H ++
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 37/57 (64%)
Query: 3 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQH 59
HTGE P++C C K+F++ L H R HTGE P+ C C KSF+R DH+ H+R H
Sbjct: 27 HTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTH 83
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 9 HRCDY--CAKTFTRKEHLVNHVRQHTGESPHHCNY--CAKSFTRKDHMVYHERQHTGETP 64
H CDY C K +T+ HL H+R HTGE P+ C + C F R D + H R+HTG P
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP 75
Query: 65 FPCQYCPKAFTRKDHLVNHVRRH 87
F C C ++F+R DHL H++RH
Sbjct: 76 FQCGVCNRSFSRSDHLALHMKRH 98
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 37 HHCNY--CAKSFTRKDHMVYHERQHTGETPFPCQY--CPKAFTRKDHLVNHVRRHTGESP 92
H+C+Y C K +T+ H+ H R HTGE P+ C + C F R D L H R+HTG P
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP 75
Query: 93 HKCTYCMKSFTRKEHLTNHIRQH 115
+C C +SF+R +HL H+++H
Sbjct: 76 FQCGVCNRSFSRSDHLALHMKRH 98
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 3 HTGETPHRCDY--CAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQH 59
HTGE P++C + C F R + L H R+HTG P C C +SF+R DH+ H ++H
Sbjct: 40 HTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 67 CQY--CPKAFTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEHLTNHIRQHT 116
C Y C K +T+ HL H+R HTGE P+KCT+ C F R + LT H R+HT
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHT 71
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 4 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHT--- 60
+G + C C K F K +L H R+HTGE P C C K + RK++++ HE ++
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 61 GETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHI 112
E F C C + F R+ L H+ HTGE P+KC+ C + F +K+ L +H+
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 3 HTGETPHRCDYCAKTFTRKEHLVNHVRQHT---GESPHHCNYCAKSFTRKDHMVYHERQH 59
HTGE P C C K + RKE+L+ H ++ E C+ C ++F R+ + H H
Sbjct: 30 HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSH 89
Query: 60 TGETPFPCQYCPKAFTRKDHLVNH-VRRHTGES 91
TGE P+ C C + F +K L +H ++ H+G S
Sbjct: 90 TGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 60 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
+G + C C K F K +L H R+HTGE P +C C K + RKE+L H ++ + R
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 120 VNDL 123
+
Sbjct: 63 SEQV 66
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 6 ETPHRC--DYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGET 63
E P+ C + C + F+R + L H+R HTG+ P C C ++F+R DH+ H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRH 87
PF C C + F R D H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 34 ESPHHC--NYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 91
E P+ C C + F+R D + H R HTG+ PF C+ C + F+R DHL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 92 PHKCTYCMKSFT----RKEHLTNHIRQ 114
P C C + F RK H H+RQ
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 62 ETPFPC--QYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E P+ C + C + F+R D L H+R HTG+ P +C CM++F+R +HLT HIR HT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 2 WHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQH 59
HTG+ P +C C + F+R +HL H+R HTGE P C+ C + F R D H + H
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 6 ETPHRC--DYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGET 63
E P+ C + C + F+R + L H+R HTG+ P C C ++F+R DH+ H R HTGE
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRH 87
PF C C + F R D H + H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 34 ESPHHC--NYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 91
E P+ C C + F+R D + H R HTG+ PF C+ C + F+R DHL H+R HTGE
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 92 PHKCTYCMKSFT----RKEHLTNHIRQ 114
P C C + F RK H H+RQ
Sbjct: 61 PFACDICGRKFARSDERKRHTKIHLRQ 87
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 62 ETPFPC--QYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E P+ C + C + F+R D L H+R HTG+ P +C CM++F+R +HLT HIR HT
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 57
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 3 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQH 59
HTG+ P +C C + F+R +HL H+R HTGE P C+ C + F R D H + H
Sbjct: 28 HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 4 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGET 63
+G + C+ C K F HL H H+GE P+ C C F RKD M YH R H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 64 --PFPCQYCPKAFTRKDHLVNHVRR-HTGES 91
P+ CQ C K F+R DHL H+++ H+G S
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 32 TGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGE- 90
+G S C C K F H+ H+ H+GE P+ C C F RKD + HVR H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 91 -SPHKCTYCMKSFTRKEHLTNHIRQ 114
P+ C C K F+R +HL HI+Q
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQ 87
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 1 MWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGE--SPHHCNYCAKSFTRKDHMVYHERQ 58
+ H+GE P+ C C F RK+ + HVR H G P+ C C K F+R DH+ H +Q
Sbjct: 28 LSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQ 87
Query: 59 -HTGET 63
H+G +
Sbjct: 88 VHSGPS 93
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 60 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQH 115
+G + C+ C K F HL H H+GE P+ C C F RK+ ++ H+R H
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 6 ETPHRC--DYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGET 63
E P+ C + C + F+R + L H+R HTG+ P C C ++F+R DH+ H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRH 87
PF C C + F R D H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 34 ESPHHC--NYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 91
E P+ C C + F+R D + H R HTG+ PF C+ C + F+R DHL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 92 PHKCTYCMKSFTRKEHLTNHIRQH 115
P C C + F R + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 62 ETPFPC--QYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E P+ C + C + F+R D L H+R HTG+ P +C CM++F+R +HLT HIR HT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 3 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQH 59
HTG+ P +C C + F+R +HL H+R HTGE P C+ C + F R D H + H
Sbjct: 29 HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 6 ETPHRC--DYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGET 63
E P+ C + C + F+R L H+R HTG+ P C C ++F+R DH+ H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRH 87
PF C C + F R D H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 34 ESPHHC--NYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 91
E P+ C C + F+R + H R HTG+ PF C+ C + F+R DHL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 92 PHKCTYCMKSFT----RKEHLTNHIRQ 114
P C C + F RK H H+RQ
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 3 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQH 59
HTG+ P +C C + F+R +HL H+R HTGE P C+ C + F R D H + H
Sbjct: 29 HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 62 ETPFPC--QYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E P+ C + C + F+R L H+R HTG+ P +C CM++F+R +HLT HIR HT
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 6 ETPHRC--DYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGET 63
E P+ C + C + F+R L H+R HTG+ P C C ++F+R DH+ H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRH 87
PF C C + F R D H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 34 ESPHHC--NYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 91
E P+ C C + F+R + H R HTG+ PF C+ C + F+R DHL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 92 PHKCTYCMKSFT----RKEHLTNHIRQ 114
P C C + F RK H H+RQ
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 2 WHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQH 59
HTG+ P +C C + F+R +HL H+R HTGE P C+ C + F R D H + H
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 62 ETPFPC--QYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E P+ C + C + F+R L H+R HTG+ P +C CM++F+R +HLT HIR HT
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 46/84 (54%)
Query: 8 PHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPC 67
PH+C+ C K F+RK+ L H+R HTG P+ C C + + H R H+ E PF C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 68 QYCPKAFTRKDHLVNHVRRHTGES 91
Q CP A L H+R HTG+S
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDS 91
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 41/83 (49%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPH 93
PH C C K F+RKD + H R HTG P+ C+ C A L H+R H+ E P
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPF 65
Query: 94 KCTYCMKSFTRKEHLTNHIRQHT 116
KC C + LT H+R HT
Sbjct: 66 KCQICPYASRNSSQLTVHLRSHT 88
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%)
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
P C+ C K F+RKD L H+R HTG P+KC C + L H+R H+ R
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER 63
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%)
Query: 3 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGE 62
HTG P++C C L H+R H+ E P C C + + H R HTG+
Sbjct: 31 HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Query: 63 T 63
+
Sbjct: 91 S 91
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 6 ETPHRC--DYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGET 63
E P+ C + C + F+ +L H+R HTG+ P C C ++F+R DH+ H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRH 87
PF C C + F R D H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 34 ESPHHC--NYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 91
E P+ C C + F+ ++ H R HTG+ PF C+ C + F+R DHL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 92 PHKCTYCMKSFT----RKEHLTNHIRQ 114
P C C + F RK H H+RQ
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 2 WHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQH 59
HTG+ P +C C + F+R +HL H+R HTGE P C+ C + F R D H + H
Sbjct: 28 IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 62 ETPFPC--QYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E P+ C + C + F+ +L H+R HTG+ P +C CM++F+R +HLT HIR HT
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 6 ETPHRC--DYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGET 63
E P+ C + C + F++ L H+R HTG+ P C C ++F+R DH+ H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRH 87
PF C C + F R D H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 34 ESPHHC--NYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 91
E P+ C C + F++ + H R HTG+ PF C+ C + F+R DHL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 92 PHKCTYCMKSFT----RKEHLTNHIRQ 114
P C C + F RK H H+RQ
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 3 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQH 59
HTG+ P +C C + F+R +HL H+R HTGE P C+ C + F R D H + H
Sbjct: 29 HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 62 ETPFPC--QYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E P+ C + C + F++ L H+R HTG+ P +C CM++F+R +HLT HIR HT
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 44/78 (56%)
Query: 39 CNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYC 98
C C KSF R + H H+ P+PCQYC K F +K + H HTGE PHKC C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 99 MKSFTRKEHLTNHIRQHT 116
K+F++ +L H R+HT
Sbjct: 64 GKAFSQSSNLITHSRKHT 81
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 44/79 (55%)
Query: 11 CDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYC 70
C C K+F R L H+ H+ P+ C YC K F +K M H HTGE P CQ C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 71 PKAFTRKDHLVNHVRRHTG 89
KAF++ +L+ H R+HTG
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 1 MWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHT 60
+ H+ P+ C YC K F +K + H HTGE PH C C K+F++ +++ H R+HT
Sbjct: 22 LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHT 81
Query: 61 G 61
G
Sbjct: 82 G 82
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 65 FPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHT 116
F C+ C K+F R L H+ H+ P+ C YC K F +K + H HT
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHT 53
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 56/116 (48%), Gaps = 13/116 (11%)
Query: 14 CAKTFTRKEHLVNHV-RQHTGESPHHCNYC--------AKSFTRKDHMVYHERQHTGETP 64
C +TF+ LV HV +H G + + C KSF K +V H R HTGE P
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 65 FPCQY--CPKAFTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEHLTNHIRQHT 116
FPC + C K F R ++L H R HTGE P KC + C + F H+ HT
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 11 CDYCAKTFTRKEHLVNHVRQHTGESPHHCNY--CAKSFTRKDHMVYHERQHTGETPFPCQ 68
C K+F K LVNH+R HTGE P C + C K F R +++ H+R HTGE PF C+
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 69 Y--CPKAFTRKDHLVNHVRRHTGE 90
+ C + F H+ HT +
Sbjct: 125 FEGCDRRFANSSDRKKHMHVHTSD 148
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 39 CNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYC 98
C +C + FT+ +++ HER HT E P+ C C KAF R+DHL +H H+ E P KC C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 99 MKSFTRKEHLTNH 111
K F + L H
Sbjct: 80 GKGFCQSRTLAVH 92
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%)
Query: 11 CDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYC 70
C +C + FT+ +L+ H R HT E P+ C+ C K+F R+DH+ H H+ E PF CQ C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 71 PKAFTRKDHLVNHVRRHTGES 91
K F + L H H S
Sbjct: 80 GKGFCQSRTLAVHKTLHMQTS 100
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 3 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQH 59
HT E P+ CD C K F R++HL +H H+ E P C C K F + + H+ H
Sbjct: 40 HTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 65 FPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNH 111
F C++C + FT+ +L+ H R HT E P+ C C K+F R++HL +H
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 62.4 bits (150), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 14 CAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQY--CP 71
C K F + H+ H G H C C K+F + H+ HTGE PF C + C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 72 KAFTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEHLTNHIRQHTVRRVN 121
K F+ +L HVR HTG+ P+ C + C K F + +L +HI H + N
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 5 GETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNY--CAKSFTRKDHMVYHERQHTGE 62
G H C C K F L H HTGE P C + C K F+ ++ H R HTG+
Sbjct: 31 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 90
Query: 63 TPFPCQY--CPKAFTRKDHLVNHVRRHT 88
P+ C + C K F + +L +H+ H
Sbjct: 91 RPYVCPFDGCNKKFAQSTNLKSHILTHA 118
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 34 ESPHHC--NYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 91
E P+ C C + F++K ++ H R HTG+ PF C+ C + F+++ L H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 92 PHKCTYCMKSF----TRKEHLTNHIRQ 114
P C C + F TR H H+RQ
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHLRQ 88
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 6 ETPHRC--DYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGET 63
E P+ C + C + F++K +L H+R HTG+ P C C ++F+++ + H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 64 PFPCQYCPKAF----TRKDHLVNHVRR 86
PF C C + F TR H H+R+
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHLRQ 88
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 62 ETPFPC--QYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E P+ C + C + F++K +L H+R HTG+ P +C CM++F+++ L HIR HT
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHT 58
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 2 WHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSF----TRKDHMVYHER 57
HTG+ P +C C + F+++ L H+R HTGE P C+ C + F TR H H R
Sbjct: 28 IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLR 87
Query: 58 Q 58
Q
Sbjct: 88 Q 88
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHT 88
E P+ C C K+F+R +V H+R HTGE P+ C C KAF++ L+NH R HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 34/55 (61%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E P+ C C KAF+R LV H R HTGE P+KC C K+F++ L NH R HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHT 60
E P+ C C K F+R LV H R HTGE P+ C C K+F++ ++ H+R HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 7/90 (7%)
Query: 3 HTGETPHRCDY--CAKTFTRKEHLVNHVRQHTGESPHHCNY--CAKSFTRKDHMVYHE-R 57
HTGE PH+C + C K+++R E+L H+R HTGE P+ C + C+K+F+ H+ R
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNR 121
Query: 58 QHTGETPFPCQY--CPKAFTRKDHLVNHVR 85
H+ E P+ C+ C K +T L HV+
Sbjct: 122 THSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 12/118 (10%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVR-QHT-GESPH---HCNYCAKS---FTRKDHMVYHER 57
ET R D C++ F +E LV+H+ +H GE H C++ F + +V H R
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 58 QHTGETPFPCQY--CPKAFTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEHLTNH 111
+HTGE P C + C K+++R ++L H+R HTGE P+ C + C K+F+ H
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKH 118
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 10/85 (11%)
Query: 42 CAKSFTRKDHMVYH---ERQHTGETPFPCQYCP-----KAFTRKDHLVNHVRRHTGESPH 93
C++ F ++ +V+H E H F C + + F + LV H+RRHTGE PH
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 94 KCTY--CMKSFTRKEHLTNHIRQHT 116
KCT+ C KS++R E+L H+R HT
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHT 93
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 66 PCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHT 116
P + C + F+R D L H+R HTG+ P +C CM++F+R +HLT HIR HT
Sbjct: 23 PVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 42 CAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHT 88
C + F+R D + H R HTG+ PF C+ C + F+R DHL H+R HT
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 8 PHRC--DYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHT 60
P+ C + C + F+R + L H+R HTG+ P C C ++F+R DH+ H R HT
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 3 HTGETPHRCDYCAKTFTRKEHLVNHVRQHT 32
HTG+ P +C C + F+R +HL H+R HT
Sbjct: 44 HTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 34 ESPHHC--NYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 91
E P+ C C + F++K ++ H R HTG+ PF C+ C + F++ L H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 92 PHKCTYCMKSF----TRKEHLTNHIRQ 114
P C C + F TR H H+RQ
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHLRQ 88
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 6 ETPHRC--DYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGET 63
E P+ C + C + F++K +L H+R HTG+ P C C ++F++ + H R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 64 PFPCQYCPKAF----TRKDHLVNHVRR 86
PF C C + F TR H H+R+
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHLRQ 88
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 62 ETPFPC--QYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E P+ C + C + F++K +L H+R HTG+ P +C CM++F++ L HIR HT
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHT 58
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 2 WHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSF----TRKDHMVYHER 57
HTG+ P +C C + F++ L H+R HTGE P C+ C + F TR H H R
Sbjct: 28 IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLR 87
Query: 58 Q 58
Q
Sbjct: 88 Q 88
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 9 HRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
++CD C K+F+ L H R HTGE P+ C+ C K+F ++ H++ H R HTG P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%)
Query: 39 CNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
C+ C KSF+ + H R HTGE P+ C C KAF ++ HL+ H R HTG P
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%)
Query: 65 FPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHT 116
+ C C K+F+ L H R HTGE P+KC C K+F ++ HL H R HT
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 3 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
HTGE P++CD C K F ++ HL+ H R HTG P
Sbjct: 41 HTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 4 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGET 63
+G+ + C C K+FT K H+ H G P+ C C K F K H+V H + HTG
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 64 PFPCQYCPKAFTRKDHLVNHV 84
P+ C C K F +D HV
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%)
Query: 42 CAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKS 101
C KSFT K H H G P+ C C K F K HLV H++ HTG P++C C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 102 FTRKEHLTNHI 112
F ++ H+
Sbjct: 75 FMWRDSFHRHV 85
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 3 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKD 50
H G P+ C C K F K HLV H++ HTG P+ CN CAK F +D
Sbjct: 32 HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRD 79
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 3 HTGETPHRCDYCAKTFTRKEHLVNHV 28
HTG P+ C+ CAK F ++ HV
Sbjct: 60 HTGIKPYECNICAKRFMWRDSFHRHV 85
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
+ P++CD C +F K +L +H HTGE P+ CN C F R ++ H R H+GE P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
+ P+ C+ C SF K ++ H+ HTGE P+ C C F R +L H R H+GE P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHT 116
+ P+ C C +F K +L +H HTGE P++C C F R +L H R H+
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 3 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
HTGE P+RC+ C F R +L H R H+GE P
Sbjct: 40 HTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 39 CNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRR-HTG 89
C C ++F R++H+ H R HT E P+PC C +AFTR+D L+ H ++ H+G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 11 CDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYH-ERQHTG 61
C+ C + F R+EHL H R HT E P+ C C ++FTR+D ++ H ++ H+G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 65 FPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQ 114
F C+ C +AF R++HL H R HT E P+ C C ++FTR++ L H ++
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 3 HTGETPHRCDYCAKTFTRKEHLVNHVRQ-HTG 33
HT E P+ C C + FTR++ L+ H ++ H+G
Sbjct: 25 HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 95 CTYCMKSFTRKEHLTNHIRQHT 116
C C ++F R+EHL H R HT
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHT 26
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 8 PHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYH-ERQHTGETPFP 66
P +C C + F+R +HL H+R HTGE P C+ C + F R D H + QH P
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI--LPIL 60
Query: 67 CQYCPKAFTRKDHLVNHVRR 86
+ ++ HL N V R
Sbjct: 61 EDKVEELLSKNYHLENEVAR 80
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNH 111
PF C+ C + F+R DHL H+R HTGE P C C + F R + H
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 92 PHKCTYCMKSFTRKEHLTNHIRQHT 116
P +C CM++F+R +HLT HIR HT
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHT 27
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 3 HTGETPHRCDYCAKTFTRKE 22
HTGE P CD C + F R +
Sbjct: 26 HTGEKPFACDICGRKFARSD 45
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 33 GESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
G + C C +S+ + H H+ E +PC+YC K F ++ H HTGE
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 93 HKCTYCMKSFTRKEHLTNHIR 113
++C C KSF + +++HI+
Sbjct: 79 YQCLACGKSFINYQFMSSHIK 99
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%)
Query: 5 GETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
G + C C +++ L H H+ E + C YC K F ++ HE HTGE
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 65 FPCQYCPKAFTRKDHLVNHVRRHTGESP 92
+ C C K+F + +H++ + P
Sbjct: 79 YQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 27/62 (43%)
Query: 3 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGE 62
H+ E + C YC K F E+ H HTGE + C C KSF M H + +
Sbjct: 45 HSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQ 104
Query: 63 TP 64
P
Sbjct: 105 DP 106
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 25/59 (42%)
Query: 61 GETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
G + C C +++ L H H+ E + C YC K F E+ T H HT R
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER 77
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 33 GESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRH 87
G S C+YC K F ++ H R HTGE P+ C++C A +K L H+ RH
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 5 GETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQH 59
G + C YC K F +L H+R HTGE P+ C +C + +K + YH +H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 61 GETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQH 115
G + C YC K F +L H+R HTGE P+KC +C + +K L H+ +H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 3 HTGETPHRCDYCAKTFTRKEHLVNHVRQH 31
HTGE P++C++C +K L H+ +H
Sbjct: 27 HTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 89 GESPHKCTYCMKSFTRKEHLTNHIRQHT 116
G S +C+YC K F +L H+R HT
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHT 28
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 42 CAKSFTRKDHMVYHERQHTGETPFPC--QYCPKAFTRKDHLVNHVRRHTGESPHKCTY-- 97
C ++ + + H +HTGE PFPC + C K FT HL H HTGE C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 98 CMKSFTRKEHLTNHI-RQHTVR 118
C FT K ++ H R H ++
Sbjct: 71 CDLRFTTKANMKKHFNRFHNIK 92
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 14 CAKTFTRKEHLVNHVRQHTGESPHHC--NYCAKSFTRKDHMVYHERQHTGETPFPCQY-- 69
C + + L H+ +HTGE P C C K FT H+ H HTGE F C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 70 CPKAFTRKDHLVNHVRR 86
C FT K ++ H R
Sbjct: 71 CDLRFTTKANMKKHFNR 87
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 3 HTGETPHRC--DYCAKTFTRKEHLVNHVRQHTGESPHHCNY--CAKSFTRKDHMVYH 55
HTGE P C + C K FT HL H HTGE C+ C FT K +M H
Sbjct: 28 HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKH 84
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 60 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 91
+GE P+ C C KAF RKD L++H R H GES
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGES 37
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 32 TGESPHHCNYCAKSFTRKDHMVYHERQHTGET 63
+GE+P+ C+ C K+F RKD ++ H+R H GE+
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGES 37
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 4 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGES 35
+GE P+ C C K F RK+ L++H R H GES
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGES 37
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 88 TGESPHKCTYCMKSFTRKEHLTNHIRQHT 116
+GE+P++C+ C K+F RK+ L +H R H
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHA 34
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 57/124 (45%), Gaps = 10/124 (8%)
Query: 3 HTGETPHRC--DYCAKTFTRKEHLVNHVRQHTGESPHHCNY--CAKSFTRKDHMVYH-ER 57
HTGE P C + C K FT HL H HTGE C+ C FT K +M H R
Sbjct: 37 HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR 96
Query: 58 QHTGET-PFPCQY--CPKAFTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEHLTNHI 112
H + + C + C KAF + + L H HT + P++C + C K F+ L H
Sbjct: 97 FHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE 156
Query: 113 RQHT 116
+ H
Sbjct: 157 KVHA 160
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 49/121 (40%), Gaps = 12/121 (9%)
Query: 14 CAKTFTRKEHLVNHVRQHTGESPHHC--NYCAKSFTRKDHMVYHERQHTGETPFPCQY-- 69
C + + L H+ +HTGE P C C K FT H+ H HTGE F C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 70 CPKAFTRKDHLVNHVRRHTGESPHKCTY------CMKSFTRKEHLTNHIRQHTVRRVNDL 123
C FT K ++ H R + C Y C K+F + L H HT + +
Sbjct: 80 CDLRFTTKANMKKHFNRF--HNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC 137
Query: 124 P 124
P
Sbjct: 138 P 138
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domains From Human Krueppel-Like Factor 10
Length = 72
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 42 CAKSFTRKDHMVYHERQHTGETPFPCQY--CPKAFTRKDHLVNHVRRH 87
C K++ + H+ H R HTGE PF C + C + F R D L H R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 14 CAKTFTRKEHLVNHVRQHTGESPHHCNY--CAKSFTRKDHMVYHERQH 59
C KT+ + HL H R HTGE P C++ C + F R D + H R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 70 CPKAFTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEHLTNHIRQH 115
C K + + HL H R HTGE P C++ C + F R + L+ H R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P+RCD C K F++K L+ H+R HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C KAF++K L+ H+R HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ C+ C K+F++K ++ H R HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E P++C C K+F++K L HIR HT
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHT 35
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E PH CN C KSF + H++ H+R HTGE P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E PH+C+ C K+F + HL+ H R HTGE P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P C C K+F + HL+ H R HTGE P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E PHKC C KSF + HL H R HT +
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEK 39
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 32 TGESPHHCNYCAKSFTRKDHMVYHERQHTGET 63
+GE P+ C C K+F RK H + HER HTGE+
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGES 37
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 60 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 91
+GE P+ C C KAF RK H + H R HTGES
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGES 37
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 4 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGES 35
+GE P+ C C K F RK H + H R HTGES
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGES 37
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 88 TGESPHKCTYCMKSFTRKEHLTNHIRQHT 116
+GE P+ CT C K+F RK H H R HT
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHT 34
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P++C+ C K FT+ HL NH R HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C K FT+ HL NH R HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ CN C K FT+ H+ H R HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P+KC C K FT+ HLTNH R HT +
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEK 39
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 32 TGESPHHCNYCAKSFTRKDHMVYHERQHTGE 62
+GE P+ CN C K F+ K +++ H+R HTGE
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 4 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGE 34
+GE P+ C+ C K F+ K +L+ H R HTGE
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 60 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGE 90
+GE P+ C C K F+ K +L+ H R HTGE
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
Score = 32.0 bits (71), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 88 TGESPHKCTYCMKSFTRKEHLTNHIRQHTVRRVND 122
+GE P+ C C K F+ K +L H R HT +++
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEKLSG 40
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 32 TGESPHHCNYCAKSFTRKDHMVYHERQHTGET 63
+G+ P+ CN C K+F K ++ HER HTGE+
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGES 37
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 60 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 91
+G+ P+ C C KAF K L+ H R HTGES
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGES 37
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 4 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGES 35
+G+ P+ C+ C K F K L+ H R HTGES
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGES 37
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C+ C KAFT+K HL H + HTGE P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ C C+K+FT+K H+ H++ HTGE P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P+ C C+K FT+K HL H + HTGE P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 32.3 bits (72), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P++C C K+FT+K HL H + HT +
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 64 PFPCQYCPKAFTRKDHLVNHVRR-HTGESPHKC 95
P+ CQ C K F+R DHL H+++ HT E PHKC
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 8 PHRCDYCAKTFTRKEHLVNHVRQ-HTGESPHHC 39
P+ C C K F+R +HL H++Q HT E PH C
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 36 PHHCNYCAKSFTRKDHMVYHERQ-HTGETPFPCQ 68
P+ C C K F+R DH+ H +Q HT E P CQ
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 92 PHKCTYCMKSFTRKEHLTNHIRQ-HTVRR 119
P+ C C K F+R +HL HI+Q HT R
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSER 40
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 32 TGESPHHCNYCAKSFTRKDHMVYHERQHTGET 63
+GE H CN C K+F+ K ++ H+R HTGE+
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGES 37
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 4 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGES 35
+GE H C+ C K F+ K L+ H R HTGES
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGES 37
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 60 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 91
+GE C C KAF+ K L+ H R HTGES
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGES 37
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 88 TGESPHKCTYCMKSFTRKEHLTNHIRQHT 116
+GE H+C C K+F+ K L H R HT
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHT 34
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P+ CDYC K F LV H R HTGE P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ C+YC K+F +V H+R HTGE P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C YC KAF LV H R HTGE P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E P+ C YC K+F L H R HT
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHT 36
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P++C+ C K FT+ HL NH R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ CN C K FT+ H+ H+R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C K FT+ HL NH R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E P+KC C K FT+ HL NH R HT
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHT 36
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E PF C+ C KAF + HL +H+R HTGE P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P +C C K F + HL +H+R HTGE P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P C C K+F + H+ H R HTGE P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P KC C K+F + HL +H+R HT +
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEK 39
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 3 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHH------CNYCAKSFTRKDHMVYHE 56
HTGE P+ C +C KTF +K+ L H +++ P+ C+ C K+FTR++ M H
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRY--HDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 57 RQHTG 61
G
Sbjct: 68 DNCAG 72
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 57 RQHTGETPFPCQYCPKAFTRKDHLVNHVRRH----TGESPHKCTYCMKSFTRKEHLTNHI 112
R HTGE P+ C +C K F +K L H +R+ + C+ C K+FTR+ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 29 RQHTGESPHHCNYCAKSFTRKDHMVYH-ERQHTGE---TPFPCQYCPKAFTRKDHLVNHV 84
R HTGE P+ C++C K+F +K + H +R H F C C K FTR++ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 85 RRHTG 89
G
Sbjct: 68 DNCAG 72
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 85 RRHTGESPHKCTYCMKSFTRKEHLTNHIRQH 115
R HTGE P+ C++C K+F +K+ L H +++
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 38
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 32 TGESPHHCNYCAKSFTRKDHMVYHERQHTGET 63
+GE P+ C C K+F K ++ H+R HTGE+
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGES 37
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 60 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 91
+GE P+ C C KAF K L+ H R HTGES
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGES 37
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 4 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGES 35
+GE P+ C C K F K L+ H R HTGES
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGES 37
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 88 TGESPHKCTYCMKSFTRKEHLTNHIRQHT 116
+GE P++CT C K+F K L H R HT
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHT 34
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 32 TGESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
+GE P+ CN C K+FT K ++ H+ HTG P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 4 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
+GE P+ C+ C K FT K L+ H HTG P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 60 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
+GE P+ C C KAFT K L+ H HTG P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 88 TGESPHKCTYCMKSFTRKEHLTNHIRQHT 116
+GE P+ C C K+FT K L H HT
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHT 34
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ CN C KSF +K H+ H R HTGE P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P+ C+ C K+F +K HL H R HTGE P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C K+F +K HL H R HTGE P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E P+ C C KSF +K HL H R HT
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHT 36
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C KAF+ K +L+ H+R H+GE P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P+ C C K F+ K +L+ H+R H+GE P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ C+ C K+F+ K +++ H R H+GE P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P+ C+ C K+F+ K +L H+R H+ +
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C+ C KAF++ HL+ H R HTGE P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ C C K+F++ H++ H+R HTGE P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P+ C C K F++ HL+ H R HTGE P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P++C C K+F++ HL H R HT +
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEK 39
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P+RC C K F +K +L H R HTGE P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ C C K+F +K ++ H+R HTGE P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C KAF +K +L H R HTGE P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P++C C K+F +K +LT H R HT +
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEK 39
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 60 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
+G P+ C C KAF K +L+ H+R HTGE P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 4 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
+G P+ C C K F K +L+ H+R HTGE P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 32 TGESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
+G P+ C+ C K+F K +++ H R HTGE P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 88 TGESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
+G P+ C+ C K+F K +L H+R HT +
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E PH C C KSF+ ++ H+R HTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E PH C C K+F+ L+ H R HTGE+P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P C+ C K+F+ L+ H R HTGE+P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E PH+C C KSF+ L H R HT
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHT 36
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 32 TGESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
+GE P+ C C KSF+++ + HER HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 4 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
+GE P++C C K+F+++ L H R HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 60 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
+GE P+ C+ C K+F+++ L H R HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 30.0 bits (66), Expect = 0.31, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 88 TGESPHKCTYCMKSFTRKEHLTNHIRQHT 116
+GE P++C C KSF+++ L H R HT
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHT 34
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ CN C K+F++K + H+R HTGE P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P+ C+ C KTF++K L H R HTGE P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C K F++K L H R HTGE P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P+ C C K+F++K L+ H R HT +
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEK 39
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P++C+ C K FT+ HLV H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ CN C K FT+ H+V H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C K FT+ HLV H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P+KC C K FT+ HL H HT +
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEK 39
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E PF C C KAF K +L+ H R HTGE P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P C+ C K+F K +++ H+R HTGE P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P C C K F K +L+ H R HTGE P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P +C+ C K+F K +L H R HT +
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEK 39
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C KAF+RK L++H R H GE P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E+P+ C+ C K+F+RK ++ H+R H GE P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P+ C C K F+RK L++H R H GE P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E+P++C C K+F+RK L +H R H +
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEK 39
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 60 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 91
+GE P+ CQ C KAFT+ L H R HTGES
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 32 TGESPHHCNYCAKSFTRKDHMVYHERQHTGET 63
+GE P+ C C K+FT+ + H R HTGE+
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 4 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGES 35
+GE P+ C C K FT+ L H R HTGES
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 88 TGESPHKCTYCMKSFTRKEHLTNHIRQHT 116
+GE P+ C C K+FT+ L+ H R HT
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHT 34
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQH 115
E PF C +C K + L H R H G P C C K F + + H++ H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRH 87
E P CN+C K++ + H R H G P C C K F + + H++ H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQH 59
E P C++C KT+ L H R H G P C C K F + + H + H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ C+ C KSFT+K + H++ HTGE P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P+ C C K+FT+K L H + HTGE P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C K+FT+K L H + HTGE P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P++C+ C KSFT+K L H + HT +
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEK 39
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 8 PHRCDYCAKTFTRKEHLVNHVRQHTGE 34
P +C C K FT+ L+ HVRQHTGE
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRHTGE 90
P C C KAFT+ L+ HVR+HTGE
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 36 PHHCNYCAKSFTRKDHMVYHERQHTGE 62
P C C K+FT+ ++ H RQHTGE
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 92 PHKCTYCMKSFTRKEHLTNHIRQHT 116
P +C C K+FT+ L H+RQHT
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHT 26
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 36 PHHCNYCAKSFTRKDHMVYHERQHTGETP 64
P+ C+ CAK+F+ K ++ H+R HTG P
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 8 PHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
P+ C CAKTF+ K L+ H R HTG P
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
P+ C C K F+ K L+ H R HTG P
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 92 PHKCTYCMKSFTRKEHLTNHIRQHT 116
P+ C+ C K+F+ K L H R HT
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSHT 36
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGES 91
E P+ C C K F+RKD LV+H + H+G+S
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQS 39
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGET 63
E+P+ C C K F+RKD +V H++ H+G++
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQS 39
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGES 35
E P+ C C K F+RK+ LV+H + H+G+S
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQS 39
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E+P++C C K F+RK+ L +H + H+
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHS 36
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRHTGE 90
PF C+ C + F+R DHL H R HTGE
Sbjct: 2 PFQCKTCQRKFSRSDHLKTHTRTHTGE 28
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 36 PHHCNYCAKSFTRKDHMVYHERQHTGE 62
P C C + F+R DH+ H R HTGE
Sbjct: 2 PFQCKTCQRKFSRSDHLKTHTRTHTGE 28
Score = 32.0 bits (71), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 8 PHRCDYCAKTFTRKEHLVNHVRQHTGE 34
P +C C + F+R +HL H R HTGE
Sbjct: 2 PFQCKTCQRKFSRSDHLKTHTRTHTGE 28
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 92 PHKCTYCMKSFTRKEHLTNHIRQHT 116
P +C C + F+R +HL H R HT
Sbjct: 2 PFQCKTCQRKFSRSDHLKTHTRTHT 26
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ CN C K+F++ + H+R HTGE P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P++C+ C K F++ L H R HTGE P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C KAF++ L H R HTGE P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P+KC C K+F++ L H R HT +
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEK 39
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGET 63
E P+ C+ C K+F R ++ H+R H+GE+
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGES 39
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGES 91
E P+ C C KAF R L+ H R H+GES
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGES 39
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGES 35
E P+ C C K F R L+ H R H+GES
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGES 39
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E P++C+ C K+F R L H R H+
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHS 36
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGET 63
E P+ CN C K+F K +++ H+R HTGE+
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGES 39
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGES 91
E P+ C C KAF K +L+ H R HTGES
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGES 39
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGES 35
E P+ C+ C K F K +L+ H R HTGES
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGES 39
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E P++C C K+F K +L H R HT
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHT 36
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P++C+ C K FT+ HL H R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ CN C K FT+ H+ H R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C K FT+ HL H R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E P+KC C K FT+ HL H R HT
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHT 36
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ C+ C KSF +K + H+R HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P+ C C K+F +K L H R HTGE+P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C K+F +K L H R HTGE+P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E P++C+ C KSF +K L H R HT
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHT 36
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 37 HHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRR 86
H C C +SF K H R FPC+YCP F L H+ +
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK 78
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 67 CQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQ 114
C C ++F K H+R C YC +F LT HI +
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK 78
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E PF C+ C K FT+ HL +H R HTGE P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P +C+ C K FT+ HL +H R HTGE P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P C C K FT+ H+ H+R HTGE P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P +C C K FT+ HL +H R HT +
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P++C+ C K FT+ HL H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ CN C K FT+ H+ H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C K FT+ HL H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P+KC C K FT+ HL H HT +
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEK 39
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ C C K+FT + +++ H++ HTGE P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C KAFT + +L+ H + HTGE P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P+ C C K FT + +L+ H + HTGE P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E P+ CT C K+FT + +L H + HT
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHT 36
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 45
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 32 TGESPHHCNYCAKSFTRKDHMVYHERQHTGET 63
+GE P+ C C F RKD M YH R H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 37
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 60 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGE 90
+GE P+ C C F RKD + HVR H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 4 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGE 34
+GE P+ C C F RK+ + HVR H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 88 TGESPHKCTYCMKSFTRKEHLTNHIRQH 115
+GE P+ C C F RK+ ++ H+R H
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P+RC C K FT + +L H + HTGE P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ C C K+FT + ++ H++ HTGE P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C KAFT + +L H + HTGE P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P++C C K+FT + +L H + HT +
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 36 PHHCNYCAKSFTRKDHMVYHERQHTGETP 64
P+ CN C K+F++ + H+R HTGE P
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 8 PHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
P++C+ C K F++ L H R HTGE P
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
P+ C C KAF++ L H R HTGE P
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 92 PHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
P++C C K+F++ L H R HT +
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEK 39
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 65 FPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQ 114
+ C+ C + L H+R HT P+ CTYC SF K +LT H++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 11 CDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQ 58
C+ C + L H+R HT P+HC YC SF K ++ H +
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 39 CNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVR 85
C C + + H R HT P+ C YC +F K +L H++
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTG 61
E P+ CN C K+F K ++ HER H G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGES 35
E P+ C+ C K F K L+ H R H G S
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAGVS 39
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGES 91
E P+ C C KAF K L+ H R H G S
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAGVS 39
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E P++C C K+F K L H R H
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHA 36
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETPFP 66
+ P C +C KSF K ++V H+R HTGE P
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGP 42
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGE 90
+ PF C +C K+F K +LV H R HTGE
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGE 38
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGE 34
+ P C +C K+F K +LV H R HTGE
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGE 38
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
+ P +CT+C KSF K +L H R HT +
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 37 HHCNYCAKSFTRKDHMVYHERQHTGETP 64
+ C+ C K+F RK ++ H+R HTGE P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 65 FPCQYCPKAFTRKDHLVNHVRRHTGESP 92
+ C C KAF RK L+ H R HTGE P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 9 HRCDYCAKTFTRKEHLVNHVRQHTGESP 36
+ C C K F RK L+ H R HTGE P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 93 HKCTYCMKSFTRKEHLTNHIRQHT 116
++C+ C K+F RK L H R HT
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHT 36
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E PF C C K FT K +L+ H + HTGE P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E+P C+ C K FT K +++ H++ HTGE P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P C C K FT K +L+ H + HTGE P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E+P C+ C K FT K +L H + HT R
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGER 39
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 36 PHHCNYCAKSFTRKDHMVYHERQHTGET 63
P+ CN C K+F K +++ H R HTGE+
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTHTGES 39
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRHTGES 91
P+ C C KAF K +L+ H R HTGES
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTHTGES 39
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 8 PHRCDYCAKTFTRKEHLVNHVRQHTGES 35
P+ C+ C K F K +L+ H R HTGES
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTHTGES 39
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 92 PHKCTYCMKSFTRKEHLTNHIRQHT 116
P+ C C K+F K +L H R HT
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTHT 36
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 78
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 32 TGESPHHCNYCAKSFTRKDHMVYHERQHT---GETPFPCQYCPKAFTRKDHLVNH 83
+G S C C + +K + +H+R+H FPC++C K F + D + H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 4 TGETPHRCDYCAKTFTRKEHLVNHVRQHT---GESPHHCNYCAKSFTRKDHMVYH 55
+G + +C+ C T +K L H R+H C +C K F + D + H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E ++CD C K F++ HL H R HTGE P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 39 CNYCAKSFTRKDHMVYHERQHTGETP 64
C+ C K F++ H+ H+R HTGE P
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E + C C K F++ HL H R HTGE P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 93 HKCTYCMKSFTRKEHLTNHIRQHTVRR 119
+KC C K F++ HL H R HT +
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEK 39
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 32 TGESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
+GE H C+ C K+F+ +V H+R HTGE P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 4 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
+GE H C C KTF+ LV H R HTGE+P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 60 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
+GE C C K F+ LV H R HTGE+P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 88 TGESPHKCTYCMKSFTRKEHLTNHIRQHT 116
+GE H+C+ C K+F+ L H R HT
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHT 34
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 8 PHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
P++C+ C K FT+ HL H HTGE P
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 36 PHHCNYCAKSFTRKDHMVYHERQHTGETP 64
P+ CN C K FT+ H+ H HTGE P
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
P+ C C K FT+ HL H HTGE P
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 92 PHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
P+KC C K FT+ HL H HT +
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEK 39
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 32 TGESPHHCNYCAKSFTRKDHMVYHERQHTG 61
+GE P+ C+ C K+FT K ++ H+ HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 60 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGES 91
+GE P+ C C KAFT K L+ H HTG S
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGVS 37
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 4 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGES 35
+GE P+ C C K FT K L+ H HTG S
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGVS 37
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 88 TGESPHKCTYCMKSFTRKEHLTNHIRQHT 116
+GE P+ C+ C K+FT K L H HT
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHT 34
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGE 90
E PF C C K F R+ HL H+R H+ E
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGE 34
E P +C+ C K F R+ HL H+R H+ E
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E P KC C K F R+ HL H+R H+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGE 62
E P CN C K F R+ H+ H R H+ E
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ CQ C KAF HLV H H+GE P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P++C C K F HLV H H+GE P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ C C K+F H+V H H+GE P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P+KC C K+F HL H H+ R
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGER 39
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P +C C K++ ++ HL H R HTGE P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P C C KS+ ++ H+ H+R HTGE P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E PF C C K++ ++ HL H R HTGE P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P KC C KS+ ++ HLT H R HT +
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEK 39
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 4 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
T E P RCD C K+F ++ L +H HTGE P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 60 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
T E PF C C K+F ++ L +H HTGE P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 32 TGESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
T E P C+ C KSF ++ + H HTGE P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 88 TGESPHKCTYCMKSFTRKEHLTNHIRQHT 116
T E P +C C KSF ++ L +H HT
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHT 36
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 57 RQHTGETPFPCQYCPKAFTRKDHLVNHVRRH 87
R TG PF C C ++F+R DHL H +RH
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 26 NHVRQHTGESPHHCNYCAKSFTRKDHMVYHERQH 59
R TG P C C +SF+R DH+ H ++H
Sbjct: 1 GSTRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 82 NHVRRHTGESPHKCTYCMKSFTRKEHLTNHIRQHTV 117
R TG P +C C +SF+R +HL H ++H +
Sbjct: 1 GSTRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 4 TGETPHRCDYCAKTFTRKEHLVNHVRQH 31
TG P +C C ++F+R +HL H ++H
Sbjct: 7 TGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E PF C C K+F+ L H R HTGE P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P C C KSF+ + H+R HTGE P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P C C K+F+ L H R HTGE P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P +C C KSF+ L H R HT +
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEK 39
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 60 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
+GE PF C C KAF+ K +L+ H + H E P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 32 TGESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
+GE P C+ C K+F+ K +++ H++ H E P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 4 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
+GE P C C K F+ K +L+ H + H E P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 88 TGESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
+GE P C+ C K+F+ K +L H + H +
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEK 37
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E PF C+ C K FT+ L +H R HTGE P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P +C+ C K FT+ L +H R HTGE P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 32.0 bits (71), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P C C K FT+ + H+R HTGE P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P KC C K FT+ L +H R HT +
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEK 39
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 65 FPCQYCPKAFTRKDHLVNHVRRHTGESP 92
F C C KAFTRK L H + HTGE P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 39 CNYCAKSFTRKDHMVYHERQHTGETP 64
C C K+FTRK + H++ HTGE P
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 10 RCDYCAKTFTRKEHLVNHVRQHTGESP 36
C C K FTRK L H + HTGE P
Sbjct: 14 ECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 94 KCTYCMKSFTRKEHLTNHIRQHTVRR 119
+CT C K+FTRK L+ H + HT +
Sbjct: 14 ECTECGKAFTRKSTLSMHQKIHTGEK 39
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 29 RQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGE--TPFPCQYCPKAFTRKDHLVNHVRR 86
R H+GE P+ C C FT+ M H Q E F C +C RK L H+R+
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 57 RQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGESPHK--CTYCMKSFTRKEHLTNHIRQ 114
R H+GE P+ C C FT+ + H+ + E+ K C +C RK L H+R+
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 3 HTGETPHRCDYCAKTFTRKEHLVNHVRQHTGE--SPHHCNYCAKSFTRKDHMVYHER-QH 59
H+GE P+ C C FT+ + H+ Q E + HC +C RK + H R QH
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Query: 60 TGETP 64
+ P
Sbjct: 70 SYSGP 74
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGE 62
E P+ C+ C K+FTRK + H++ HTGE
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGE 90
E P+ C C KAFTRK L H + HTGE
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGE 34
E P++C C K FTRK L H + HTGE
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P+KC+ C K+FTRK L H + HT R
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P++C C K F R HL H HTGE P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ C+ C K F R H+ H+ HTGE P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C K F R HL H HTGE P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E P+KC C K F R HL H HT
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHT 36
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 37 HHCNYCAKSFTRKDHMVYHERQHTGETP 64
H C+ C + FT K H+ H+R HTGE P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 9 HRCDYCAKTFTRKEHLVNHVRQHTGESP 36
H+C C + FT K HL H R HTGE P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 67 CQYCPKAFTRKDHLVNHVRRHTGESP 92
C C + FT K HL H R HTGE P
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 93 HKCTYCMKSFTRKEHLTNHIRQHTVRR 119
H+C C + FT K HL H R HT +
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEK 39
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 39 CNYCAKSFTRKDHMVYHERQHTGETP 64
CN C K+FT+ + H+R HTGE P
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 10 RCDYCAKTFTRKEHLVNHVRQHTGESP 36
+C+ C KTFT+ L H R HTGE P
Sbjct: 14 KCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 65 FPCQYCPKAFTRKDHLVNHVRRHTGESP 92
F C C K FT+ L H R HTGE P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 94 KCTYCMKSFTRKEHLTNHIRQHTVRR 119
KC C K+FT+ LT H R HT +
Sbjct: 14 KCNECKKTFTQSSSLTVHQRIHTGEK 39
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ CN C K+F + + H+ H+GE P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P++C+ C K F + L H H+GE P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C KAF + L H H+GE P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E ++C C KSF+R ++ HER H+GE P
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E + C C K+F+R L+ H R H+GE P
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E + C+ C K+F+R L+ H R H+GE P
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 36 PHHCNYCAKSFTRKDHMVYHERQHTGETP 64
P+ C C K+F K ++ H R HTGE P
Sbjct: 12 PYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
P+ C C KAF K L+ H R HTGE P
Sbjct: 12 PYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 8 PHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
P+ C C K F K L+ H R HTGE P
Sbjct: 12 PYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P++CD C K+F L H R HTGE P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ C+ C KSF + H+R HTGE P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C K+F L H R HTGE P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P+KC C KSF LT H R HT +
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ CN C K+F+ + + H+ HTG+ P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P+ C+ C K F+ + L H HTG+ P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C KAF+ + L H HTG+ P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P++C C K+F+ + LT H HT ++
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P++C+ C K F +L H R HTGE P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ CN C K F ++ H+R HTGE P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C K F +L H R HTGE P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E P+KC C K F +L+ H R HT
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHT 36
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C+ C KAF L H R HTGE P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P+ C+ C K F L H R HTGE P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P++C C K+F + H+R HTGE P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P+ C C K+F L H R HT +
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E HRC C K F + + + H R HTGE P
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E H C+ C K F + + + H R HTGE P
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 67 CQYCPKAFTRKDHLVNHVRRHTGESP 92
C C K F + + + H R HTGE P
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 33.1 bits (74), Expect = 0.044, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 32 TGESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
+G+ + C C KSF +K + HER HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 30.4 bits (67), Expect = 0.23, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 60 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
+G+ + CQ C K+F +K L H R HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 29.3 bits (64), Expect = 0.61, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 4 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
+G+ + C C K+F +K L H R HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 88 TGESPHKCTYCMKSFTRKEHLTNHIRQHT 116
+G+ ++C C KSF +K LT H R HT
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHT 34
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 2)
Length = 31
Score = 32.7 bits (73), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 64 PFPC--QYCPKAFTRKDHLVNHVRRHTGE 90
PF C YC K FTR D L H R HTGE
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 36 PHHC--NYCAKSFTRKDHMVYHERQHTGE 62
P C +YC K FTR D + H+R HTGE
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 12 DYCAKTFTRKEHLVNHVRQHTGE 34
YC K FTR + L H R HTGE
Sbjct: 8 SYCGKRFTRSDELQRHKRTHTGE 30
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 92 PHKCT--YCMKSFTRKEHLTNHIRQHT 116
P CT YC K FTR + L H R HT
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTHT 28
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 4 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
T E P +C+ C KTF+ HL H H GE+P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 32 TGESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
T E P CN C K+F+ H+ H+ H GE P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 60 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
T E PF C C K F+ HL H H GE+P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E ++C+ C K F+R L H + HTGE P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E + CN C K F+R + H++ HTGE P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E + C C K F+R L H + HTGE P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P+ CD C K F+ L H R H+GE P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C KAF+ L H R H+GE P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ C+ C K+F+ + H+R H+GE P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P++C C K+F+ LT H R H+ +
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEK 39
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRHTGE 90
F C+ C +AF R++HL H R HT E
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 11 CDYCAKTFTRKEHLVNHVRQHTGE 34
C+ C + F R+EHL H R HT E
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNE 28
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 95 CTYCMKSFTRKEHLTNHIRQHT 116
C C ++F R+EHL H R HT
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHT 26
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 39 CNYCAKSFTRKDHMVYHERQHTGE 62
C C ++F R++H+ H R HT E
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNE 28
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGET 63
E P+ CN C K+F H+ H R HT ET
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 32.3 bits (72), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGES 91
E P+ C C KAF HL H+R HT E+
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGES 35
E P+ C+ C K F HL H+R HT E+
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E P+ C C K+F HL H+R HT
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHT 36
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E PF C C K F+R+ L H + HTGE P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P C C K F+R+ + H + HTGE P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P +C C K F+R+ L H + HTGE P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P KC C K F+R+ L H + HT +
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEK 39
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
Length = 66
Score = 32.3 bits (72), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 33 GESPHHCNYCAKSFTRKDHMV--YHERQHTGETPFPCQYCPKAFTRKDHLVNHVR 85
GE + C C++ +T + Y +PC +C K FTRKD++ HV+
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 61 GETPFPCQYCPKAFTRKDHLVNHV----RRHTGESPHKCTYCMKSFTRKEHLTNHIR 113
GE + C+ C + +T + H +R+ P C +C K FTRK+++T H++
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYP--CPFCFKEFTRKDNMTAHVK 61
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 5 GETPHRCDYCAKTFTRKEHLVNHVRQHTGE-----SPHHCNYCAKSFTRKDHMVYHER 57
GE +RC C++ +T H+ N R + + C +C K FTRKD+M H +
Sbjct: 7 GEHTYRCKVCSRVYT---HISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGE 62
E P+ C+ C KSFT K + H++ HTGE
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGE 34
E P++C C K+FT K L H + HTGE
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGE 90
E P+ C C K+FT K L H + HTGE
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P+KC+ C KSFT K L H + HT R
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P++C+ C F + HL HV HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C+ C F + HL HV HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ C C F + H+ H HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E P+KC C F + HL H+ HT
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHT 35
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P++C C KSF ++ H+R H+GE P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P+ C C K+F L+ H R H+GE P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C+ C K+F L+ H R H+GE P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ C+ C K+F+ + + H+R H+G+ P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P+ C C K F+ ++ L H R H+G+ P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C KAF+ + L H R H+G+ P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P++C+ C K+F+ ++ L+ H R H+ ++
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 36 PHHCNYCAKSFTRKDHMVYHERQHTGETP 64
P+ C+ C KSF+ K ++ H+R HT E P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 8 PHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
P++C C K+F+ K L+ H R HT E P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
P+ C C K+F+ K L+ H R HT E P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 92 PHKCTYCMKSFTRKEHLTNHIRQHT 116
P+KC+ C KSF+ K L H R HT
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHT 36
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 32.0 bits (71), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 32 TGESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
+G+ P CN C K+F + + H+R H+GE P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 2 WHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
+G+ P C+ C KTF + L H R H+GE P
Sbjct: 4 GSSGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 60 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
+G+ P C C K F + L H R H+GE P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 32.0 bits (71), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 60 TGETPFPCQYCPKAFTRKDHLVNHVRRH 87
TG PF C C +F+R DHL H +RH
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRH 30
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 32 TGESPHHCNYCAKSFTRKDHMVYHERQH 59
TG P C C SF+R DH+ H ++H
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRH 30
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 88 TGESPHKCTYCMKSFTRKEHLTNHIRQHTV 117
TG P +C C SF+R +HL H ++H +
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRHML 32
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 4 TGETPHRCDYCAKTFTRKEHLVNHVRQH 31
TG P +C C +F+R +HL H ++H
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRH 30
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRH 87
E P+ C C K F R HL+ H++RH
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQH 31
E P+ C+ C K F R HL+ H+++H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQH 59
E P+ CN C K+F R H++ H ++H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQH 115
E P+ C C K+F R HL H+++H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGES 91
E PF C C + FT++++LV H R H +S
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHT 60
E+P C+ C + FT+++++V HER H
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGES 35
E P +C C + FT++ +LV H R H +S
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E+P KC+ C + FT++ +L H R H
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHA 36
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C KAFT + +L+ H + HT + P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ C C K+FT + +++ H++ HT + P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P+ C C K FT + +L+ H + HT + P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P+ C C K+FT + +L H + HT ++
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQK 39
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ CN C K+F ++ H+ HTGE P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P++C+ C K F +L H HTGE P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C KAF +L H HTGE P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 42 CAKSFTRKDHMVYHERQHTGETPFPC--QYCPKAFTRKDHLVNHVRRHTG---ESPHKCT 96
C K+F + + + H+ HT + P+ C + C K F+ L H + H G + C+
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 97 YCMKSFT 103
+ K++T
Sbjct: 69 FVGKTWT 75
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 14 CAKTFTRKEHLVNHVRQHTGESPHHC--NYCAKSFTRKDHMVYHERQHTGETPFPCQ 68
C K F + L H HT + P+ C C K F+ + HE+ H G +PC+
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCK 62
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P++C C K F R HL H R HTG P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C KAF R HL H R HTG P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P+KC+ C K+F R HL H R HT R
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ C+ C K+F R H+ H R HTG P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E PF C C KAF+ L H R HTGE P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P C C K+F+ + H R HTGE P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P C C K F+ L H R HTGE P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGE 62
E P+ C C K + R+ + +H+R HTGE
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGE 38
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGE 34
E P++C C K + R+ L H R HTGE
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGE 38
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRRVN 121
E P+KC C K + R+ L H R HT +++
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEKLS 41
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGE 90
E P+ C C K + R+ L H R HTGE
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGE 38
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 36 PHHCNYCAKSFTRKDHMVYHERQHTGETP 64
P+ CN C K+F+ + H+ HTGE P
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 8 PHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
P+ C+ C K F+ L H HTGE P
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
P+ C C KAF+ L H HTGE P
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 42 CAKSFTRKDHMVYHERQHTGETPFPC--QYCPKAFTRKDHLVNHVRRHTG---ESPHKCT 96
C K+F + + + H+ HT + P+ C + C K F+ L H + H G + C+
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 97 YCMKSFT 103
+ K++T
Sbjct: 69 FVGKTWT 75
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 14 CAKTFTRKEHLVNHVRQHTGESPHHC--NYCAKSFTRKDHMVYHERQHTGETPFPCQ 68
C K F + L H HT + P+ C C K F+ + HE+ H G +PC+
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCK 62
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P++C+ C K + K +L H + HTGE P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ C C K + K ++ H++ HTGE P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C+ C K + K +L H + HTGE P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P+KC C K + K +L H + HT R
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGER 39
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P +CD C K+F + L H HT E P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E PF C C K+F + L H HT E P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P C+ C KSF + + H HT E P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P KC C KSF + L H HT +
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEK 39
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRHTGE 90
F C+ C +AF R+++L H R HT E
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNE 28
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 11 CDYCAKTFTRKEHLVNHVRQHTGE 34
C+ C + F R+E+L H R HT E
Sbjct: 5 CEVCTRAFARQEYLKRHYRSHTNE 28
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 95 CTYCMKSFTRKEHLTNHIRQHT 116
C C ++F R+E+L H R HT
Sbjct: 5 CEVCTRAFARQEYLKRHYRSHT 26
>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
Bklf
Length = 35
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 60 TGETPFPCQY--CPKAFTRKDHLVNHVRRH 87
TG PF C + C ++F+R DHL H +RH
Sbjct: 3 TGIKPFQCTWPDCDRSFSRSDHLALHRKRH 32
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 32 TGESPHHCNY--CAKSFTRKDHMVYHERQH 59
TG P C + C +SF+R DH+ H ++H
Sbjct: 3 TGIKPFQCTWPDCDRSFSRSDHLALHRKRH 32
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 88 TGESPHKCTY--CMKSFTRKEHLTNHIRQHTV 117
TG P +CT+ C +SF+R +HL H ++H +
Sbjct: 3 TGIKPFQCTWPDCDRSFSRSDHLALHRKRHML 34
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 4 TGETPHRCDY--CAKTFTRKEHLVNHVRQH 31
TG P +C + C ++F+R +HL H ++H
Sbjct: 3 TGIKPFQCTWPDCDRSFSRSDHLALHRKRH 32
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E PF C+ C K F +H R H+GE P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P +C+ C K F +H R H+GE P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P C C K F H+R H+GE P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc
Finger Protein 32
Length = 42
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E+P+ C C KSFT++ + H+R + P
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
ETP+ C C K+FT++ L H R + P
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
ETP+ C C K+FT++ L H R + P
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIR 113
E+P+ C C KSFT++ L H R
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQR 32
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+PC+ C F L +H+R HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P+ C+ C F + L +H+R HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|1VA3|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 3)
pdb|1SP1|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f3, Minimized Average Structure
Length = 29
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 65 FPCQYCPKAFTRKDHLVNHVRRHTGE 90
F C CPK F R DHL H++ H +
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNK 28
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 32 TGESPHHCNY--CAKSFTRKDHMVYHER-QHTGETPFPCQ--YCPKAFTRKDHLVNHVRR 86
+G S C++ C + F+ + ++ +H++ QH + F C C K+F K HL H++
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 87 HTGESPHKCTY 97
H+ + C +
Sbjct: 63 HSDTRDYICEF 73
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 60 TGETPFPCQY--CPKAFTRKDHLVNHVR-RHTGESPHKCT--YCMKSFTRKEHLTNHIRQ 114
+G + PC + C + F+ + +L +H + +H + C C KSF K+HL H++
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 115 HTVRR 119
H+ R
Sbjct: 63 HSDTR 67
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 21/78 (26%)
Query: 14 CAKTFTRKEHLVNHV-RQHTGESPHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQYCPK 72
C +TF+ LV HV +H G P N H+ Y E C K
Sbjct: 31 CDRTFSTMHELVTHVTMEHVG-GPEQNN----------HVCYWEE---------CPREGK 70
Query: 73 AFTRKDHLVNHVRRHTGE 90
+F K LVNH+R HTGE
Sbjct: 71 SFKAKYKLVNHIRVHTGE 88
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 11 CDYCAKTFTRKEHLVNHVRQHTGE 34
C K+F K LVNH+R HTGE
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGE 88
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 66 PCQYCPKAFTRKDHLVNHV-RRHTG---ESPHKCTY--C---MKSFTRKEHLTNHIRQHT 116
P + C + F+ LV HV H G ++ H C + C KSF K L NHIR HT
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 117 VRR 119
+
Sbjct: 87 GEK 89
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 4 TGETPHRCDYCAKTFTRKEHLVNHVRQHT 32
+GE P+ C C +TF+ LV H + HT
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 88 TGESPHKCTYCMKSFTRKEHLTNHIRQHTVR 118
+GE P+ C C ++F+ L H + HTV+
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHTVK 36
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 60 TGETPFPCQYCPKAFTRKDHLVNHVRRHT 88
+GE P+ C C + F+ + LV H + HT
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 32 TGESPHHCNYCAKSFTRKDHMVYHERQHT 60
+GE P+ C C ++F+ + +V H++ HT
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 8 PHRCDYCAKTFTRKEHLVNHVRQHTGE 34
P+ C C KTF + HL H R HTGE
Sbjct: 12 PYECKECRKTFIQIGHLNQHKRVHTGE 38
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRHTGE 90
P+ C+ C K F + HL H R HTGE
Sbjct: 12 PYECKECRKTFIQIGHLNQHKRVHTGE 38
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 36 PHHCNYCAKSFTRKDHMVYHERQHTGE 62
P+ C C K+F + H+ H+R HTGE
Sbjct: 12 PYECKECRKTFIQIGHLNQHKRVHTGE 38
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 92 PHKCTYCMKSFTRKEHLTNHIRQHTVRRVND 122
P++C C K+F + HL H R HT R +
Sbjct: 12 PYECKECRKTFIQIGHLNQHKRVHTGERSSG 42
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRHTGE 90
F C+ C +AF R++ L H R HT E
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNE 28
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 11 CDYCAKTFTRKEHLVNHVRQHTGE 34
C+ C + F R+E L H R HT E
Sbjct: 5 CEVCTRAFARQEALKRHYRSHTNE 28
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 95 CTYCMKSFTRKEHLTNHIRQHT 116
C C ++F R+E L H R HT
Sbjct: 5 CEVCTRAFARQEALKRHYRSHT 26
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGE 34
E P++C+ C K + R+ +L H R H GE
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGE 62
E P+ C C K + R+ ++ H+R H GE
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGE 90
E P+ C+ C K + R+ +L H R H GE
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQH 115
E P+KC C K + R+ +L H R H
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVH 35
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 60 TGETPFPCQYCPKAFTRKDHLVNHVRRHT 88
+G+ PF C+ C AFT K + H++ HT
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 88 TGESPHKCTYCMKSFTRKEHLTNHIRQHT 116
+G+ P C C+ +FT K + H++ HT
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHT 31
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 37 HHCNYCAKSFTRKDHMVYHERQHTGETP 64
+ C+ C K+F +K + H+R H GE P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 65 FPCQYCPKAFTRKDHLVNHVRRHTGESP 92
+ C C KAF +K L H R H GE P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 9 HRCDYCAKTFTRKEHLVNHVRQHTGESP 36
+ C C K F +K L H R H GE P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|1RIM|A Chain A, E6-Binding Zinc Finger (E6apc2)
Length = 33
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 65 FPCQYCPKAFTRKDHLVNHVRRH 87
F C CPK F R DHL H+ H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLH 25
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C C KAF H R HTG+ P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ C C K+F H+R HTG+ P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P++C C K F H R HTG+ P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
E P+KC C K+F T H R HT +R
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQR 39
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
E P++C+ C K F + L H HTGE P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGESP 92
E P+ C+ C K F + L H HTGE P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGETP 64
E P+ C C K F + + H HTGE P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRHTGE 90
P C+ C K FT +L H+R H+GE
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGE 28
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 8 PHRCDYCAKTFTRKEHLVNHVRQHTGE 34
P +C C K FT +L H+R H+GE
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGE 28
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 35 SPHHCNYCAKSFTRKDHMVYHERQHTGE 62
P C C K FT ++ H R H+GE
Sbjct: 1 GPLKCRECGKQFTTSGNLKRHLRIHSGE 28
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 91 SPHKCTYCMKSFTRKEHLTNHIRQHT 116
P KC C K FT +L H+R H+
Sbjct: 1 GPLKCRECGKQFTTSGNLKRHLRIHS 26
>pdb|1RIK|A Chain A, E6-Binding Zinc Finger (E6apc1)
Length = 29
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 65 FPCQYCPKAFTRKDHLVNHVRRHTGE 90
F C CPK F R DHL H+ H +
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENK 28
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 65 FPCQYCPKAFTRKDHLVNHVRRHTGE 90
F C+YC K F K L H+R HT E
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNE 35
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 11 CDYCAKTFTRKEHLVNHVRQHTGE 34
C+YC K F K L H+R HT E
Sbjct: 12 CEYCNKVFKFKHSLQAHLRIHTNE 35
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 60 TGETPFPCQYCPKAFTRKDHLVNHVRRHTGE 90
T E P+ C C KAF + +L H HTGE
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGE 38
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 4 TGETPHRCDYCAKTFTRKEHLVNHVRQHTGE 34
T E P++C C K F + +L H HTGE
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGE 38
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 32 TGESPHHCNYCAKSFTRKDHMVYHERQHTGE 62
T E P+ C C K+F + ++ H+ HTGE
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGE 38
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 88 TGESPHKCTYCMKSFTRKEHLTNHIRQHTVRR 119
T E P+KC C K+F + +LT H HT +
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 64 PFPCQYCPKAFTRKDHLVNHVR-RHTGESP 92
P+ C C KAF + L+ H R HTGE P
Sbjct: 12 PYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 8 PHRCDYCAKTFTRKEHLVNHVR-QHTGESP 36
P+ C C K F + L+ H R HTGE P
Sbjct: 12 PYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 36 PHHCNYCAKSFTRKDHMVYHER-QHTGETP 64
P+ C C K+F + ++ H R HTGE P
Sbjct: 12 PYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 62 ETPFPCQY--CPKAFTRKDHLVNHVRRHTGESP 92
E PF C + C F+R D L H R H+G P
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 34 ESPHHCNY--CAKSFTRKDHMVYHERQHTGETP 64
E P C + C F+R D + H R H+G P
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 6 ETPHRCDY--CAKTFTRKEHLVNHVRQHTGESP 36
E P C + C F+R + L H R H+G P
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
315- 345) Of Human Zinc Finger Protein 473
Length = 44
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 37 HHCNYCAKSFTRKDHMVYHERQHT 60
++CN C K+FTR H+ H++ HT
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHT 36
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 65 FPCQYCPKAFTRKDHLVNHVRRHTGES 91
+ C C KAFTR HL H + HT +S
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHTRKS 39
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 9 HRCDYCAKTFTRKEHLVNHVRQHTGES 35
+ C+ C K FTR HL H + HT +S
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHTRKS 39
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 93 HKCTYCMKSFTRKEHLTNHIRQHT 116
+ C C K+FTR HLT H + HT
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHT 36
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 8 PHRCDYCAKTFTRKEHLVNHVRQH 31
P+ C+ C K F + L NH+R H
Sbjct: 2 PYVCERCGKRFVQSSQLANHIRHH 25
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRH 87
P+ C+ C K F + L NH+R H
Sbjct: 2 PYVCERCGKRFVQSSQLANHIRHH 25
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 92 PHKCTYCMKSFTRKEHLTNHIRQH 115
P+ C C K F + L NHIR H
Sbjct: 2 PYVCERCGKRFVQSSQLANHIRHH 25
>pdb|2KFQ|A Chain A, Nmr Structure Of Fp1
Length = 32
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 65 FPCQYCPKAFTRKDHLVNHVR 85
F C CPK F R D L H++
Sbjct: 3 FACPACPKRFMRSDALSKHIK 23
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGE 62
E P C C K+F K ++ H+R H +
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDD 38
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 90 ESPHKCTYCMKSFTRKEHLTNHIRQHT 116
E P KCT C K+F K L H R H
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHV 36
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGE 34
E P +C C K F K L+ H R H +
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDD 38
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 62 ETPFPCQYCPKAFTRKDHLVNHVRRHTGE 90
E P C C KAF K L+ H R H +
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDD 38
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 36 PHHCNYCAKSFTRKDHMVYHERQHTG 61
P+ C+ C K F+ K M H R HTG
Sbjct: 3 PYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 8 PHRCDYCAKTFTRKEHLVNHVRQHTG 33
P+ C C K F+ K + H R HTG
Sbjct: 3 PYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRHTG 89
P+ C C K F+ K + H R HTG
Sbjct: 3 PYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
Of Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 49 KDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRRHTGE 90
K + HER H + PF C YC + +L H+++ G+
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRHTGE 90
P+ C +C + F L HVR HTGE
Sbjct: 3 PYVCIHCQRQFADPGALQRHVRIHTGE 29
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 8 PHRCDYCAKTFTRKEHLVNHVRQHTGE 34
P+ C +C + F L HVR HTGE
Sbjct: 3 PYVCIHCQRQFADPGALQRHVRIHTGE 29
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 8 PHRCDYCAKTFTRKEHLVNHVRQHTGESP 36
P++C C K+F+ L H HT E P
Sbjct: 12 PYQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 92 PHKCTYCMKSFTRKEHLTNHIRQHT 116
P++C+ C KSF+ LT H HT
Sbjct: 12 PYQCSECGKSFSGSYRLTQHWITHT 36
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 1)
Length = 37
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 68 QYCPKAFTRKDHLVNHVRRHTGE 90
Q C K + + HL H+R HTGE
Sbjct: 14 QGCGKVYGKTSHLRAHLRWHTGE 36
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 14 CAKTFTRKEHLVNHVRQHTGE 34
C K + + HL H+R HTGE
Sbjct: 16 CGKVYGKTSHLRAHLRWHTGE 36
>pdb|2LVH|A Chain A, Solution Structure Of The Zinc Finger Afv1p06 Protein
From The Hyperthermophilic Archaeal Virus Afv1
Length = 59
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNYCAKSFT 47
E ++C C TF K+ L+ H+ +P +Y +SF+
Sbjct: 8 ERVYQCLRCGLTFRTKKQLIRHLVNTEKVNPLSIDYYYQSFS 49
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 11 CDYCAKTFTRKEHLVNHVRQHTGESPH 37
C+ C K F HL H H+GE P+
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 13/29 (44%)
Query: 6 ETPHRCDYCAKTFTRKEHLVNHVRQHTGE 34
E H CD C K F L H R H GE
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGE 38
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 34 ESPHHCNYCAKSFTRKDHMVYHERQHTGE 62
E H C+ C K+F + H+R H GE
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGE 38
>pdb|1PAA|A Chain A, Structure Of A Histidine-X4-Histidine Zinc Finger
Domain: Insights Into Adr1-Uas1 Protein-Dna Recognition
Length = 30
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 65 FPCQYCPKAFTRKDHLVNHVRR-HTG 89
+ C C +AFTR+D L+ H ++ H+G
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIHSG 28
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 8 PHRCDYCAKTFTRKEHLVNHVRQH 31
P++CDYC ++F+ + H+ H
Sbjct: 3 PYQCDYCGRSFSDPTSKMRHLETH 26
>pdb|2EOU|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
370- 400) Of Human Zinc Finger Protein 473
Length = 44
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 63 TPFPCQYCPKAFTRKDHLVNHVRRHTGES 91
T CQ C K F L+ H H GES
Sbjct: 11 TTSECQECGKIFRHSSLLIEHQALHAGES 39
>pdb|2ELX|A Chain A, Solution Structure Of The 8th C2h2 Zinc Finger Of Mouse
Zinc Finger Protein 406
Length = 35
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 88 TGESPHKCTYCMKSFTRKEHLTNHIRQ 114
+G S + C C+K F L +HIR+
Sbjct: 3 SGSSGYVCALCLKKFVSSIRLRSHIRE 29
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 64 PFPCQYCPKAFTRKDHLVNHVRRHTGE 90
PF C C A K +L H+ RH+ E
Sbjct: 9 PFKCSLCEYATRSKSNLKAHMNRHSTE 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.134 0.470
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,257,350
Number of Sequences: 62578
Number of extensions: 156369
Number of successful extensions: 1373
Number of sequences better than 100.0: 200
Number of HSP's better than 100.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 482
Number of HSP's gapped (non-prelim): 778
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)