RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10762
(126 letters)
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 37.4 bits (86), Expect = 0.001
Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 7 TPHRCDYCAKTFTRKEHLVNHVRQHTGESPHHCNY--CAKSFTRKDHMVYHERQHT 60
P C C +F+R EHL H+R HTGE P C+Y C KSF+R + H R H
Sbjct: 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHH 87
Score = 37.0 bits (85), Expect = 0.001
Identities = 27/116 (23%), Positives = 38/116 (32%), Gaps = 9/116 (7%)
Query: 1 MWHTGETPHRCDYCAKTFTRKEHLVNHVRQHTGES-PHHCNYCAKSFTRKDHMVYHERQ- 58
+ R + + G S P C SF+R + H R
Sbjct: 253 SSSSASESPRSSLPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSV 312
Query: 59 -HTGETPFPCQ----YCPKAFTRKDHLVNHVRRHTGESPHKCTY--CMKSFTRKEH 107
H+GE+ P C K F+R D L H+ HT SP K F+ +
Sbjct: 313 NHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLN 368
Score = 36.6 bits (84), Expect = 0.002
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 63 TPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCM--KSFTRKEHLTNHIRQHTVRRV 120
P C C +F+R +HL H+R HTGE P +C+Y KSF+R L+ H+R H
Sbjct: 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPS 91
Query: 121 NDL 123
+
Sbjct: 92 DLN 94
Score = 35.4 bits (81), Expect = 0.003
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 36 PHHCNYCAKSFTRKDHMVYHERQHTGETPFPCQY--CPKAFTRKDHLVNHVRRHTGESPH 93
P C C SF+R +H+ H R HTGE P C Y C K+F+R L H+R H
Sbjct: 33 PDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPSD 92
Score = 30.4 bits (68), Expect = 0.21
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 63 TPFPCQYCPKAFTRKDHLVNHVR--RHTGES--PHKCTY--CMKSFTRKEHLTNHIRQHT 116
P + C +F+R L H+R H+GES P C Y C K F+R + L HI HT
Sbjct: 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHT 347
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 30.4 bits (69), Expect = 0.022
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 79 HLVNHVRRHTGESPHKCTYCMKSFTR 104
+L H+R HTGE P+KC C KSF+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 29.7 bits (67), Expect = 0.044
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 23 HLVNHVRQHTGESPHHCNYCAKSFTR 48
+L H+R HTGE P+ C C KSF+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 29.3 bits (66), Expect = 0.063
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 51 HMVYHERQHTGETPFPCQYCPKAFTR 76
++ H R HTGE P+ C C K+F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 28.3 bits (63), Expect = 0.67
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 63 TPFPCQYCPKAFTRKDHLVNHVRRHTGESPHKCTYCMKSFTRKEHLTNHI 112
+P+ C C F+ L H+R E C C K F + +H+
Sbjct: 72 SPYVCPLCLMPFSSSVSLKQHIR--YTEHSKVCPVCGKEFRNTDSTLDHV 119
Score = 27.1 bits (60), Expect = 1.7
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 10/54 (18%)
Query: 35 SPHHCNYCAKSFTR----KDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHV 84
SP+ C C F+ K H+ Y E C C K F D ++HV
Sbjct: 72 SPYVCPLCLMPFSSSVSLKQHIRYTEHSKV------CPVCGKEFRNTDSTLDHV 119
>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional.
Length = 321
Score = 28.5 bits (64), Expect = 0.86
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Query: 68 QYCPKAF----TRK-DHLVNHVRRHTGESPHK 94
+YCP AF T D +V ++ H+G +K
Sbjct: 117 KYCPNAFVIVITNPLDVMVKLLQEHSGLPKNK 148
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys.
The C2H2 zinc finger is composed of two short beta
strands followed by an alpha helix. The amino terminal
part of the helix binds the major groove in DNA binding
zinc fingers. The accepted consensus binding sequence
for Sp1 is usually defined by the asymmetric
hexanucleotide core GGGCGG but this sequence does not
include, among others, the GAG (=CTC) repeat that
constitutes a high-affinity site for Sp1 binding to the
wt1 promoter.
Length = 22
Score = 26.2 bits (58), Expect = 0.90
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 67 CQYCPKAFTRKDHLVNHVRRH 87
C C K+F+RK +L H+R H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
Score = 24.6 bits (54), Expect = 3.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 10 RCDYCAKTFTRKEHLVNHVRQH 31
+C C K+F+RK +L H+R H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 23.5 bits (51), Expect = 7.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 94 KCTYCMKSFTRKEHLTNHIRQH 115
KC C KSF+RK +L H+R H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 25.5 bits (56), Expect = 1.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 93 HKCTYCMKSFTRKEHLTNHIRQH 115
++C C K F K L H+R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.1 bits (55), Expect = 2.0
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 9 HRCDYCAKTFTRKEHLVNHVRQH 31
+RC C K F K L H+R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 24.3 bits (53), Expect = 3.4
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 65 FPCQYCPKAFTRKDHLVNHVRRH 87
+ C C K F K L H+R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 24.0 bits (52), Expect = 6.3
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 37 HHCNYCAKSFTRKDHMVYHERQH 59
+ C C K F K + H R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|173271 PRK14810, PRK14810, formamidopyrimidine-DNA glycosylase;
Provisional.
Length = 272
Score = 26.4 bits (58), Expect = 5.1
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 18/57 (31%)
Query: 46 FTRKDHMVYHERQHTGETPFPCQYCPKAFTRKDHLVNHVRR--HTGESPHKCTYCMK 100
F + H VY Q TGE PC C +RR G S H C +C K
Sbjct: 232 FFQLSHRVY---QRTGE---PCLNCKTP----------IRRVVVAGRSSHYCPHCQK 272
>gnl|CDD|212564 cd11674, lambda-1, inner capsid protein lambda-1 or VP3. The
reovirus inner capsid protein lambda-1 displays
nucleoside triphosphate phosphohydrolase (NTPase),
RNA-5'-triphosphatase (RTPase), and RNA helicase
activity and may play a role in the transcription of the
virus genome, the unwinding or reannealing of
double-stranded RNA during RNA synthesis. The RTPase
activity constitutes the first step in the capping of
RNA, resulting in a 5'-diphosphorylated RNA plus-strand.
lambda1 is an Orthoreovirus core protein, VP3 is the
homologous core protein in Aquareoviruses.
Length = 1166
Score = 25.9 bits (57), Expect = 7.0
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 91 SPHKCTYCMKSFTRKEHLTNHIR 113
S + C CM F+ + L H R
Sbjct: 72 SSYVCNVCMAEFSSMDQLAEHQR 94
>gnl|CDD|234859 PRK00893, PRK00893, aspartate carbamoyltransferase regulatory
subunit; Reviewed.
Length = 152
Score = 25.5 bits (57), Expect = 7.7
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 10 RCDYCAKTFTRKE 22
RC YC K F+
Sbjct: 136 RCKYCEKEFSEDI 148
>gnl|CDD|188024 TIGR00107, deoD, purine-nucleoside phosphorylase, family 1
(deoD). Purine nucleoside phosphorylase (also called
inosine phosphorylase) is a purine salvage enzyme.
Purine nucleosides, such as guanosine, inosine, or
xanthosine, plus orthophosphate, can be converted to
their respective purine bases (guanine, hypoxanthine,
or xanthine) plus ribose-1-phosphate. This family of
purine nucleoside phosphorylase is restricted to the
bacteria [Purines, pyrimidines, nucleosides, and
nucleotides, Salvage of nucleosides and nucleotides].
Length = 232
Score = 25.5 bits (56), Expect = 7.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 8 PHRCDYCAKTFTRKEHLVNHVR 29
P R Y A+TF VN+VR
Sbjct: 19 PLRAKYIAETFLEDAREVNNVR 40
>gnl|CDD|215056 PLN00104, PLN00104, MYST -like histone acetyltransferase;
Provisional.
Length = 450
Score = 25.9 bits (57), Expect = 8.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 11 CDYCAKTFTRKEHLVNHVR 29
C++C K RKE L H++
Sbjct: 201 CEFCLKFMKRKEQLQRHMK 219
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 25.6 bits (56), Expect = 8.8
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 13/41 (31%)
Query: 20 RKEHLVNHVRQHTGESPHHCNYCAKSFTRKD---HM-VYHE 56
R E NHV HC C ++F + + HM V+HE
Sbjct: 446 RVEEAKNHV---------HCEKCGQAFQQGEMEKHMKVFHE 477
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.134 0.470
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,039,469
Number of extensions: 469598
Number of successful extensions: 796
Number of sequences better than 10.0: 1
Number of HSP's gapped: 784
Number of HSP's successfully gapped: 64
Length of query: 126
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 41
Effective length of database: 7,167,512
Effective search space: 293867992
Effective search space used: 293867992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.3 bits)