BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10763
(90 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CR2|A Chain A, Solution Structure Of N-Terminal Domain Of Speckle-Type
Poz Protein
Length = 159
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 42/43 (97%)
Query: 6 KSQRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCE 48
+SQRAYRFVQGKDWGFKKFIRRDFLLDE NGLLP+DKLT+FCE
Sbjct: 98 ESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCE 140
>pdb|3IVB|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopmath-
Macroh2asbcpep1
pdb|3IVQ|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVQ|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Pucsbc1_pep1
Length = 145
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 42/43 (97%)
Query: 6 KSQRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCE 48
+SQRAYRFVQGKDWGFKKFIRRDFLLDE NGLLP+DKLT+FCE
Sbjct: 97 ESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCE 139
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 6 KSQRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCE 48
+SQRAYRFVQGKDWGFKKFIRR FLLDE NGLLP+DKLT+FCE
Sbjct: 93 ESQRAYRFVQGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCE 135
>pdb|3HQH|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep1
pdb|3HQL|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQL|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HQM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HSV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
pdb|3HSV|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
Length = 145
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/43 (88%), Positives = 41/43 (95%)
Query: 6 KSQRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCE 48
+SQRAYRFVQGKDWGFKKFIRR FLLDE NGLLP+DKLT+FCE
Sbjct: 97 ESQRAYRFVQGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCE 139
>pdb|2F1X|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
pdb|2F1X|B Chain B, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
Length = 161
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 13 FVQGKDWGFKKFIRRDFLLDELNGLLPEDKLT 44
F + DWGF F+ + D G + +DK+T
Sbjct: 111 FHKENDWGFSNFMAWSEVTDPEKGFIDDDKVT 142
>pdb|2XXN|A Chain A, Structure Of The Virf4-Hausp Traf Domain Complex
Length = 143
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 13 FVQGKDWGFKKFIRRDFLLDELNGLLPEDKLT 44
F + DWGF F+ + D G + +DK+T
Sbjct: 97 FHKENDWGFSNFMAWSEVTDPEKGFIDDDKVT 128
>pdb|1YY6|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With An Ebna1 Peptide
pdb|1YZE|A Chain A, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|B Chain B, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|C Chain C, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|2FOJ|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 364-367
pdb|2FOO|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 359-362
pdb|2FOP|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With Mdm2 Peptide 147-150
pdb|3MQR|A Chain A, Crystal Structure Of The Usp7:hdmx(Ahss) Complex
pdb|3MQS|C Chain C, Crystal Structure Of The Usp7:hdm2(Psts) Complex
Length = 155
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 13 FVQGKDWGFKKFIRRDFLLDELNGLLPEDKLT 44
F + DWGF F+ + D G + +DK+T
Sbjct: 109 FHKENDWGFSNFMAWSEVTDPEKGFIDDDKVT 140
>pdb|2F1W|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Length = 158
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 13 FVQGKDWGFKKFIRRDFLLDELNGLLPEDKLT 44
F + DWGF F+ + D G + +DK+T
Sbjct: 111 FHKENDWGFSNFMAWSEVTDPEKGFIDDDKVT 142
>pdb|2F1Y|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A Mdm2 Peptide
Length = 159
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 13 FVQGKDWGFKKFIRRDFLLDELNGLLPEDKLT 44
F + DWGF F+ + D G + +DK+T
Sbjct: 111 FHKENDWGFSNFMAWSEVTDPEKGFIDDDKVT 142
>pdb|3HR5|L Chain L, M1prime Peptide From Ige Bound By Humanized Antibody
47h4 Fab
pdb|3HR5|A Chain A, M1prime Peptide From Ige Bound By Humanized Antibody
47h4 Fab
pdb|3HR5|P Chain P, M1prime Peptide From Ige Bound By Humanized Antibody
47h4 Fab
pdb|3HR5|Q Chain Q, M1prime Peptide From Ige Bound By Humanized Antibody
47h4 Fab
Length = 219
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 28 DFLLDELNGLLPEDKLTIFCEQNPLI 53
DF L ++ L PED T +C QN L+
Sbjct: 75 DFTL-TISSLQPEDFATYYCSQNTLV 99
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp
pdb|2F1Z|B Chain B, Crystal Structure Of Hausp
Length = 522
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 13 FVQGKDWGFKKFIRRDFLLDELNGLLPEDKLT 44
F + DWGF F+ + D G + +DK+T
Sbjct: 121 FHKENDWGFSNFMAWSEVTDPEKGFIDDDKVT 152
>pdb|1IV8|A Chain A, Crystal Structure Of Maltooligosyl Trehalose Synthase
Length = 720
Score = 25.4 bits (54), Expect = 7.6, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 21 FKKFIRRDFLLDELNGLLPEDKLTIFCEQNPLILVVKTEIS 61
+K + DFL E GL E+ L F N +++++KT+ S
Sbjct: 642 LRKQLAEDFLKGEYKGLDLEEGLCGFIRFNKILVIIKTKGS 682
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.143 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,628,240
Number of Sequences: 62578
Number of extensions: 90226
Number of successful extensions: 345
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 334
Number of HSP's gapped (non-prelim): 14
length of query: 90
length of database: 14,973,337
effective HSP length: 57
effective length of query: 33
effective length of database: 11,406,391
effective search space: 376410903
effective search space used: 376410903
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)