Query psy10763
Match_columns 90
No_of_seqs 100 out of 184
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 17:54:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10763.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10763hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hqi_A Speckle-type POZ protei 99.6 8E-16 2.7E-20 113.3 6.1 80 8-89 95-174 (312)
2 3ivv_A Speckle-type POZ protei 99.3 5.8E-13 2E-17 89.2 2.7 47 8-54 99-145 (145)
3 1lb6_A TNF receptor-associated 99.1 4.2E-11 1.4E-15 81.4 3.1 35 18-54 124-158 (160)
4 2foj_A Ubiquitin carboxyl-term 99.0 3.3E-10 1.1E-14 76.3 3.2 44 10-53 105-149 (155)
5 4ghu_A TNF receptor-associated 98.9 3.1E-10 1.1E-14 80.8 1.2 37 16-54 153-189 (198)
6 4gjh_A TNF receptor-associated 98.9 4.4E-10 1.5E-14 78.1 1.5 38 16-53 137-174 (178)
7 2gkw_A TNF receptor-associated 98.8 8.8E-10 3E-14 77.6 1.6 35 17-53 154-188 (192)
8 1d00_A Tumor necrosis factor r 98.8 1.4E-09 4.6E-14 74.1 2.4 37 16-53 131-167 (168)
9 1ca9_A TRAF2, protein (TNF rec 98.8 1.8E-09 6.1E-14 75.6 1.6 37 16-53 155-191 (192)
10 1flk_A TNF receptor associated 98.7 3E-09 1E-13 76.8 1.6 36 16-53 189-224 (228)
11 2f1z_A Ubiquitin carboxyl-term 98.3 2.1E-07 7.2E-12 73.1 3.3 44 9-52 116-160 (522)
12 4gwm_A Meprin A subunit beta; 89.3 0.17 5.8E-06 41.3 2.2 37 16-54 532-568 (592)
13 3htm_A Speckle-type POZ protei 79.0 1.3 4.4E-05 28.7 2.5 20 70-89 15-34 (172)
14 1oey_A P67-PHOX, neutrophil cy 47.7 5.5 0.00019 24.7 0.7 25 24-49 58-82 (83)
15 3pqk_A Biofilm growth-associat 37.1 18 0.00063 21.4 1.9 18 70-87 47-64 (102)
16 1rdt_E LXXLL motif coactivator 34.3 19 0.00064 17.8 1.3 12 76-87 9-20 (26)
17 2ka4_B P113, signal transducer 30.8 12 0.00042 21.7 0.3 13 71-83 5-17 (57)
18 1xau_A B- and T-lymphocyte att 23.8 46 0.0016 22.0 2.2 24 24-51 17-40 (122)
19 3jth_A Transcription activator 23.6 22 0.00074 20.8 0.5 18 70-87 47-64 (98)
20 3f6o_A Probable transcriptiona 20.8 28 0.00096 21.3 0.6 18 70-87 42-59 (118)
21 2ihc_A Transcription regulator 20.7 20 0.0007 22.0 -0.1 18 72-89 12-29 (124)
No 1
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.60 E-value=8e-16 Score=113.30 Aligned_cols=80 Identities=51% Similarity=0.853 Sum_probs=62.9
Q ss_pred cceeeeecCCccccccceecccccccccCCCCCCeEEEEEEEEEeeeeeeceeeeEeeeeecCCCCCcHHHHHHHhhhcC
Q psy10763 8 QRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEQNPLILVVKTEISFECFVTCVGSWNGKMPHQLKLVFQEN 87 (90)
Q Consensus 8 ~~~~~F~~~~~wG~~~Fi~R~~Le~e~s~~L~dD~ltI~C~VtVv~e~~~~~~~~~v~v~~~~vPPSdL~~hLg~LL~~~ 87 (90)
...++|..+.+|||.+||+|++|+++.++||+||+|+|+|+|+|+++..... .......+.+||++|.+||++|++++
T Consensus 95 ~~~~~F~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~--~~~~~~~~~~p~~~l~~~l~~l~~~~ 172 (312)
T 3hqi_A 95 QRAYRFVQGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNIS--GQNTMNMVKVPECRLADELGGLWENS 172 (312)
T ss_dssp SSCEEECTTCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEE--CCCCCSSCCCCCCCHHHHHHHHHHTT
T ss_pred CCceeCCCCCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEecccccc--ccccccccCCCCchHHHHHHHHHhCC
Confidence 4567887767899999999999987788999999999999999998743210 00011223459999999999999998
Q ss_pred CC
Q psy10763 88 KF 89 (90)
Q Consensus 88 ~~ 89 (90)
+|
T Consensus 173 ~~ 174 (312)
T 3hqi_A 173 RF 174 (312)
T ss_dssp CS
T ss_pred CC
Confidence 76
No 2
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.31 E-value=5.8e-13 Score=89.20 Aligned_cols=47 Identities=81% Similarity=1.365 Sum_probs=40.6
Q ss_pred cceeeeecCCccccccceecccccccccCCCCCCeEEEEEEEEEeee
Q psy10763 8 QRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEQNPLIL 54 (90)
Q Consensus 8 ~~~~~F~~~~~wG~~~Fi~R~~Le~e~s~~L~dD~ltI~C~VtVv~e 54 (90)
...++|.....|||.+||+|++|+++.++||+||+|+|+|+|+|+++
T Consensus 99 ~~~~~F~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d 145 (145)
T 3ivv_A 99 QRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 145 (145)
T ss_dssp SSCEEEETTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred cceEEecCCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence 35677876677999999999999767789999999999999999974
No 3
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.09 E-value=4.2e-11 Score=81.37 Aligned_cols=35 Identities=20% Similarity=0.431 Sum_probs=30.3
Q ss_pred ccccccceecccccccccCCCCCCeEEEEEEEEEeee
Q psy10763 18 DWGFKKFIRRDFLLDELNGLLPEDKLTIFCEQNPLIL 54 (90)
Q Consensus 18 ~wG~~~Fi~R~~Le~e~s~~L~dD~ltI~C~VtVv~e 54 (90)
+|||.+||++++|+ .++||+||+|+|+|+|+|+++
T Consensus 124 ~~G~~~Fi~~~~L~--~~~yl~dD~l~I~~~V~v~~~ 158 (160)
T 1lb6_A 124 GFGYVTFMHLEALR--QRTFIKDDTLLVRCEVSTRFD 158 (160)
T ss_dssp EEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEEC---
T ss_pred CcCEeeEeEHHHhh--hCCCccCCEEEEEEEEEEeec
Confidence 69999999999994 678999999999999999976
No 4
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=98.95 E-value=3.3e-10 Score=76.29 Aligned_cols=44 Identities=25% Similarity=0.444 Sum_probs=37.7
Q ss_pred eeeeec-CCccccccceecccccccccCCCCCCeEEEEEEEEEee
Q psy10763 10 AYRFVQ-GKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEQNPLI 53 (90)
Q Consensus 10 ~~~F~~-~~~wG~~~Fi~R~~Le~e~s~~L~dD~ltI~C~VtVv~ 53 (90)
.+.|.. ..+|||.+||++++|+++.++||.||+|+|+|+|+|.+
T Consensus 105 ~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~ 149 (155)
T 2foj_A 105 SHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADA 149 (155)
T ss_dssp EEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECC
T ss_pred EEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeC
Confidence 456765 46799999999999976578899999999999999953
No 5
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=98.89 E-value=3.1e-10 Score=80.82 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=33.4
Q ss_pred CCccccccceecccccccccCCCCCCeEEEEEEEEEeee
Q psy10763 16 GKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEQNPLIL 54 (90)
Q Consensus 16 ~~~wG~~~Fi~R~~Le~e~s~~L~dD~ltI~C~VtVv~e 54 (90)
+.+|||.+||++++|+ .++||+||+|+|+|+|+|+..
T Consensus 153 ~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~~ 189 (198)
T 4ghu_A 153 NIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDL 189 (198)
T ss_dssp CCCEEEEEEEEHHHHH--HTTSCBTTBEEEEEEECCTTC
T ss_pred cCCcCchhEeEHHHhh--hcCCeeCCEEEEEEEEEeccC
Confidence 4569999999999994 688999999999999999965
No 6
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=98.87 E-value=4.4e-10 Score=78.10 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=32.9
Q ss_pred CCccccccceecccccccccCCCCCCeEEEEEEEEEee
Q psy10763 16 GKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEQNPLI 53 (90)
Q Consensus 16 ~~~wG~~~Fi~R~~Le~e~s~~L~dD~ltI~C~VtVv~ 53 (90)
+..|||.+||++++|++..++||+||+|+|+|+|+|.+
T Consensus 137 ~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~ 174 (178)
T 4gjh_A 137 NIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTD 174 (178)
T ss_dssp CCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTT
T ss_pred cCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecC
Confidence 35699999999999964448999999999999998764
No 7
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=98.82 E-value=8.8e-10 Score=77.61 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=31.4
Q ss_pred CccccccceecccccccccCCCCCCeEEEEEEEEEee
Q psy10763 17 KDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEQNPLI 53 (90)
Q Consensus 17 ~~wG~~~Fi~R~~Le~e~s~~L~dD~ltI~C~VtVv~ 53 (90)
.+|||.+||++++|+ .++||+||+|+|+|+|+|.+
T Consensus 154 ~~wG~~~Fi~~~~L~--~~gyl~dD~l~I~~~V~v~~ 188 (192)
T 2gkw_A 154 IASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSD 188 (192)
T ss_dssp CCEEEEEEEEHHHHH--HTTSCBTTEEEEEEEECCTT
T ss_pred CCCChHHEeEHHHhC--cCCCeeCCEEEEEEEEEcCC
Confidence 569999999999995 57899999999999998864
No 8
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=98.81 E-value=1.4e-09 Score=74.10 Aligned_cols=37 Identities=14% Similarity=0.027 Sum_probs=31.6
Q ss_pred CCccccccceecccccccccCCCCCCeEEEEEEEEEee
Q psy10763 16 GKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEQNPLI 53 (90)
Q Consensus 16 ~~~wG~~~Fi~R~~Le~e~s~~L~dD~ltI~C~VtVv~ 53 (90)
+.+|||.+||++++|++. ++||+||+|+|+|+|+|.+
T Consensus 131 ~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~~ 167 (168)
T 1d00_A 131 NIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLTG 167 (168)
T ss_dssp CCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCTT
T ss_pred CCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEecC
Confidence 456999999999999632 3899999999999999864
No 9
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=98.76 E-value=1.8e-09 Score=75.56 Aligned_cols=37 Identities=14% Similarity=-0.003 Sum_probs=32.5
Q ss_pred CCccccccceecccccccccCCCCCCeEEEEEEEEEee
Q psy10763 16 GKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEQNPLI 53 (90)
Q Consensus 16 ~~~wG~~~Fi~R~~Le~e~s~~L~dD~ltI~C~VtVv~ 53 (90)
+.+|||.+||++++|++ .++||+||+|+|+|+|+|.+
T Consensus 155 ~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~ 191 (192)
T 1ca9_A 155 NIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG 191 (192)
T ss_dssp CCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred CCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence 34699999999999952 67899999999999999864
No 10
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=98.71 E-value=3e-09 Score=76.78 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=32.2
Q ss_pred CCccccccceecccccccccCCCCCCeEEEEEEEEEee
Q psy10763 16 GKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEQNPLI 53 (90)
Q Consensus 16 ~~~wG~~~Fi~R~~Le~e~s~~L~dD~ltI~C~VtVv~ 53 (90)
+.+|||.+||++++|+ .++||+||+|+|+|+|+|.+
T Consensus 189 ~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~ 224 (228)
T 1flk_A 189 NIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSD 224 (228)
T ss_dssp CCCCSEEEEEEHHHHS--SSTTCCSSEEEEEEECCCTT
T ss_pred CCCcCHHHeeEHHHHc--cCCCccCCEEEEEEEEEccc
Confidence 3569999999999995 57899999999999999864
No 11
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=98.34 E-value=2.1e-07 Score=73.09 Aligned_cols=44 Identities=25% Similarity=0.432 Sum_probs=38.0
Q ss_pred ceeeeec-CCccccccceecccccccccCCCCCCeEEEEEEEEEe
Q psy10763 9 RAYRFVQ-GKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEQNPL 52 (90)
Q Consensus 9 ~~~~F~~-~~~wG~~~Fi~R~~Le~e~s~~L~dD~ltI~C~VtVv 52 (90)
..+.|.. ..+|||.+||++++|.++.++||.||+++|+|+|+|.
T Consensus 116 ~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~ 160 (522)
T 2f1z_A 116 ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQAD 160 (522)
T ss_dssp CCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEEC
T ss_pred ceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeecc
Confidence 3466765 4679999999999997678899999999999999996
No 12
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=89.27 E-value=0.17 Score=41.32 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=30.0
Q ss_pred CCccccccceecccccccccCCCCCCeEEEEEEEEEeee
Q psy10763 16 GKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEQNPLIL 54 (90)
Q Consensus 16 ~~~wG~~~Fi~R~~Le~e~s~~L~dD~ltI~C~VtVv~e 54 (90)
+..||+..||.-+.|. ...||+||.+.|.++|.=+..
T Consensus 532 ~~~~G~~~fish~~l~--~r~fiK~d~~~i~~~~eD~~~ 568 (592)
T 4gwm_A 532 GGGYGTSAFITHERLK--SRDFIKGDDVYILLTVEDISH 568 (592)
T ss_dssp EEEEEEEEEEEHHHHT--STTSSBTTBEEEEEEEEECGG
T ss_pred cCCcCccccccHHHHh--hcCcccCCeEEEEEEEEeCcc
Confidence 4458999999999994 556999999999998755533
No 13
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=79.00 E-value=1.3 Score=28.72 Aligned_cols=20 Identities=10% Similarity=0.282 Sum_probs=17.9
Q ss_pred CCCCCcHHHHHHHhhhcCCC
Q psy10763 70 GSWNGKMPHQLKLVFQENKF 89 (90)
Q Consensus 70 ~vPPSdL~~hLg~LL~~~~~ 89 (90)
.+||+.|.++|.+|+++++|
T Consensus 15 ~~p~~~l~~~l~~l~~~~~~ 34 (172)
T 3htm_A 15 KVPECRLADELGGLWENSRF 34 (172)
T ss_dssp CCCCCCHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHhCCCC
Confidence 35999999999999999876
No 14
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=47.75 E-value=5.5 Score=24.66 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=17.7
Q ss_pred ceecccccccccCCCCCCeEEEEEEE
Q psy10763 24 FIRRDFLLDELNGLLPEDKLTIFCEQ 49 (90)
Q Consensus 24 Fi~R~~Le~e~s~~L~dD~ltI~C~V 49 (90)
-+.=++|+ ......+|.|||++|.-
T Consensus 58 i~~d~dl~-~aw~~~~n~~LtL~C~~ 82 (83)
T 1oey_A 58 PLSEDSMK-DAWGQVKNYCLTLWCEN 82 (83)
T ss_dssp ECCTTTHH-HHHTTCBTTEEEEEECC
T ss_pred ccChHHHH-HHHHhccCCcEEEEEec
Confidence 34445564 56667789999999974
No 15
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=37.13 E-value=18 Score=21.36 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=15.4
Q ss_pred CCCCCcHHHHHHHhhhcC
Q psy10763 70 GSWNGKMPHQLKLVFQEN 87 (90)
Q Consensus 70 ~vPPSdL~~hLg~LL~~~ 87 (90)
+++++.+++||..|-+.|
T Consensus 47 ~is~~tvs~~L~~L~~~G 64 (102)
T 3pqk_A 47 GIGQPTLSQQLGVLRESG 64 (102)
T ss_dssp TCCTTHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 359999999999998765
No 16
>1rdt_E LXXLL motif coactivator, peroxisome proliferator activated receptor gamma; hormone, polymorphism, hormone/growth factor complex; HET: L79 570; 2.40A {Homo sapiens}
Probab=34.34 E-value=19 Score=17.75 Aligned_cols=12 Identities=17% Similarity=0.196 Sum_probs=10.0
Q ss_pred HHHHHHHhhhcC
Q psy10763 76 MPHQLKLVFQEN 87 (90)
Q Consensus 76 L~~hLg~LL~~~ 87 (90)
=|+||.+||..+
T Consensus 9 khkqLSeLLR~g 20 (26)
T 1rdt_E 9 KHKQLSELLRGG 20 (26)
T ss_pred HHHHHHHHHcCC
Confidence 478999999876
No 17
>2ka4_B P113, signal transducer and activator of transcription 2; CBP/P300, STAT2, TAZ1, transactivation domain, bromodomain, alternative splicing; NMR {Homo sapiens}
Probab=30.76 E-value=12 Score=21.69 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=11.4
Q ss_pred CCCCcHHHHHHHh
Q psy10763 71 SWNGKMPHQLKLV 83 (90)
Q Consensus 71 vPPSdL~~hLg~L 83 (90)
||.+||.++|..|
T Consensus 5 ~~EpDLP~DL~~l 17 (57)
T 2ka4_B 5 VPEPDLPHDLRHL 17 (57)
T ss_dssp CCCCCCCHHHHTS
T ss_pred CCCCCccHHHHHh
Confidence 4899999999876
No 18
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4
Probab=23.79 E-value=46 Score=22.04 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=17.7
Q ss_pred ceecccccccccCCCCCCeEEEEEEEEE
Q psy10763 24 FIRRDFLLDELNGLLPEDKLTIFCEQNP 51 (90)
Q Consensus 24 Fi~R~~Le~e~s~~L~dD~ltI~C~VtV 51 (90)
+|+|... .. ....|+|+|+|-++=
T Consensus 17 ~ikR~S~--~t--v~~G~~~~LeCpv~y 40 (122)
T 1xau_A 17 NIKRNSK--HS--AWTGELFKIECPVKY 40 (122)
T ss_dssp CCCTTEE--EE--ECTTSCEEEEEEEEC
T ss_pred EEEeecc--EE--EecCCeEEEEeEecC
Confidence 6788766 22 456899999998854
No 19
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=23.64 E-value=22 Score=20.81 Aligned_cols=18 Identities=6% Similarity=0.113 Sum_probs=15.2
Q ss_pred CCCCCcHHHHHHHhhhcC
Q psy10763 70 GSWNGKMPHQLKLVFQEN 87 (90)
Q Consensus 70 ~vPPSdL~~hLg~LL~~~ 87 (90)
+++++.+++||..|-+.|
T Consensus 47 ~is~~tvs~~L~~L~~~G 64 (98)
T 3jth_A 47 QLSQSALSQHLAWLRRDG 64 (98)
T ss_dssp TCCHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 358999999999998765
No 20
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=20.78 E-value=28 Score=21.31 Aligned_cols=18 Identities=0% Similarity=-0.064 Sum_probs=15.3
Q ss_pred CCCCCcHHHHHHHhhhcC
Q psy10763 70 GSWNGKMPHQLKLVFQEN 87 (90)
Q Consensus 70 ~vPPSdL~~hLg~LL~~~ 87 (90)
+++++.+++||..|-+.|
T Consensus 42 ~is~~tvs~hL~~L~~~G 59 (118)
T 3f6o_A 42 DMALPSFMKHIHFLEDSG 59 (118)
T ss_dssp CSCHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 359999999999998765
No 21
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=20.68 E-value=20 Score=22.01 Aligned_cols=18 Identities=6% Similarity=-0.021 Sum_probs=16.4
Q ss_pred CCCcHHHHHHHhhhcCCC
Q psy10763 72 WNGKMPHQLKLVFQENKF 89 (90)
Q Consensus 72 PPSdL~~hLg~LL~~~~~ 89 (90)
++++|.++|.+|+.+++|
T Consensus 12 ~~~~l~~~l~~l~~~~~~ 29 (124)
T 2ihc_A 12 HSTNVLLSLNDQRKKDVL 29 (124)
T ss_dssp HHHHHHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHhcCCC
Confidence 788999999999999876
Done!