RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10763
         (90 letters)



>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 146

 Score = 49.4 bits (117), Expect = 1e-09
 Identities = 41/58 (70%), Positives = 48/58 (82%), Gaps = 4/58 (6%)

Query: 5   QKSQRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEQNPLILVVKTEISF 62
            +SQRAYRFVQGKDWGFKKFIRRDFLLDE NGLLP+DKLT+FCE    + VV+  ++ 
Sbjct: 90  MESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCE----VSVVQDSVNI 143


>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 155

 Score = 34.4 bits (78), Expect = 6e-04
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 4   LQKSQRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCE 48
           L   QR       K +G+  F+  + L       + +D L + CE
Sbjct: 110 LLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCE 152


>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3
           (TRAF3) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 155

 Score = 31.7 bits (71), Expect = 0.006
 Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 2/38 (5%)

Query: 18  DWGFKKFIRRDFLLDELNGLLPEDKLTIFCEQNPLILV 55
             G   F+ +  L +     + +D + I    +   L 
Sbjct: 118 ASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTSDLP 153


>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2
           (TRAF2) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 152

 Score = 30.9 bits (69), Expect = 0.010
 Identities = 5/30 (16%), Positives = 10/30 (33%), Gaps = 1/30 (3%)

Query: 19  WGFKKFIRRDFLLDELNGLLPEDKLTIFCE 48
            G   F      ++  N  + +D + I   
Sbjct: 118 SGCPLFCPVS-KMEAKNSYVRDDAIFIKAI 146


>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia
           coli [TaxId: 562]}
          Length = 177

 Score = 24.1 bits (51), Expect = 2.7
 Identities = 10/31 (32%), Positives = 11/31 (35%)

Query: 14  VQGKDWGFKKFIRRDFLLDELNGLLPEDKLT 44
           +QG D       RR      L   LPE   T
Sbjct: 147 LQGVDSVMTPPERRAQAWQRLVADLPESFYT 177


>d2d0ta1 a.266.1.2 (A:12-403) Indoleamine 2,3-dioxygenase {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 392

 Score = 23.4 bits (50), Expect = 5.0
 Identities = 3/18 (16%), Positives = 8/18 (44%)

Query: 27 RDFLLDELNGLLPEDKLT 44
          +++ +DE  G    +   
Sbjct: 2  KEYHIDEEVGFALPNPQE 19


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.143    0.454 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 352,205
Number of extensions: 13920
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 9
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.1 bits)